BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030046
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OKV|A Chain A, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|B Chain B, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|C Chain C, C-Myc Dna Unwinding Element Binding Protein
pdb|2OKV|D Chain D, C-Myc Dna Unwinding Element Binding Protein
Length = 209
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 22/107 (20%)
Query: 53 GRLVSEIGPGLLVLVGLHEFDTDADADY----------------------VMQKKYGVLL 90
G +S IG G+ VL+G+ DT + ++ VM K+Y +L
Sbjct: 17 GEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEILC 76
Query: 91 VSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIK 137
VSQFTL +LKGNKPDFH+AMP ++A+ FY+S +++ RK+Y P+ IK
Sbjct: 77 VSQFTLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIK 123
>pdb|3KNF|A Chain A, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|B Chain B, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|C Chain C, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|D Chain D, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|E Chain E, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KNF|F Chain F, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum
pdb|3KO4|A Chain A, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|B Chain B, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|C Chain C, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|D Chain D, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|E Chain E, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO4|F Chain F, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Plasmodium Falciparum In Complex With Adp
pdb|3KO5|A Chain A, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|B Chain B, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|C Chain C, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|D Chain D, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|E Chain E, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO5|F Chain F, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Adp
pdb|3KO7|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO7|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Lysine
pdb|3KO9|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KO9|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Arginine
pdb|3KNP|A Chain A, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|B Chain B, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|C Chain C, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|D Chain D, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|E Chain E, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KNP|F Chain F, Crystal Structure Of Dtd From Plasmodium Falciparum
pdb|3KO3|A Chain A, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|B Chain B, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|C Chain C, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|D Chain D, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|E Chain E, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KO3|F Chain F, D-Tyrosyl-Trna(Tyr) Deacylase From Plasmodium Falciparum
Incomplex With Adp, Obtained Through Soaking Native
Enzyme Crystal With The Atp
pdb|3KOB|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOB|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Glutamic
Acid
pdb|3KOC|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOC|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Histidine
pdb|3KOD|A Chain A, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|B Chain B, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|C Chain C, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|D Chain D, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|E Chain E, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3KOD|F Chain F, Dtd From Plasmodium Falciparum In Complex With D-Serine
pdb|3LMT|A Chain A, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|B Chain B, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|C Chain C, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|D Chain D, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|E Chain E, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMT|F Chain F, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|A Chain A, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|B Chain B, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|C Chain C, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|D Chain D, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|E Chain E, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|F Chain F, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|G Chain G, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMU|H Chain H, Crystal Strucutre Of Dtd From Plasmodium Falciparum
pdb|3LMV|A Chain A, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|B Chain B, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|C Chain C, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|D Chain D, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|E Chain E, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
pdb|3LMV|F Chain F, D-Tyr-Trna(Tyr) Deacylase From Plasmodium Falciparum In
Complex With Hepes
Length = 164
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 22/106 (20%)
Query: 54 RLVSEIGPGLLVLVGLHEFDTDADADYVMQK---------------------KYGVLLVS 92
++SEI GL+ +G+H+ DT DA Y+++K Y +L+VS
Sbjct: 28 EIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVS 87
Query: 93 QFTLYG-ILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIK 137
QFTL+G KGNKPDFH+A P +A FY+ ++D+F+K YN D IK
Sbjct: 88 QFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIK 133
>pdb|2DBO|A Chain A, Crystal Structure Of D-Tyr-Trna(Tyr) Deacylase From
Aquifex Aeolicus
Length = 148
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 22/100 (22%)
Query: 53 GRLVSEIGPGLLVLVGLHEFDTDADADYVMQK---------------------KYGVLLV 91
G++V I GL V +G+ + DT+ D + ++ K K +L+V
Sbjct: 17 GKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVV 76
Query: 92 SQFTLYG-ILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKS 130
SQFTLY + KG +P F A P++AK Y+ VDK ++S
Sbjct: 77 SQFTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKES 116
>pdb|1JKE|A Chain A, D-Tyr Trnatyr Deacylase From Escherichia Coli
pdb|1JKE|B Chain B, D-Tyr Trnatyr Deacylase From Escherichia Coli
pdb|1JKE|C Chain C, D-Tyr Trnatyr Deacylase From Escherichia Coli
pdb|1JKE|D Chain D, D-Tyr Trnatyr Deacylase From Escherichia Coli
Length = 145
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 22/99 (22%)
Query: 53 GRLVSEIGPGLLVLVGLHEFDTDADADYVMQKKYG---------------------VLLV 91
G + EIG GLLVL+G+ + D + A+ + ++ G VL+V
Sbjct: 17 GEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVV 76
Query: 92 SQFTLYG-ILKGNKPDFHVAMPPQKAKPFYDSLVDKFRK 129
SQFTL +G +P F P +A+ YD V++ R+
Sbjct: 77 SQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQ 115
>pdb|1J7G|A Chain A, Structure Of Yihz From Haemophilus Influenzae (Hi0670), A
D-Tyr- Trna(Tyr) Deacylase
Length = 144
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 53 GRLVSEIGPGLLVLVGLHEFDTDADAD---------------------YVMQKKYGVLLV 91
G + +IG GLLVL+G+ + D AD V Q + +L+V
Sbjct: 17 GETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIV 76
Query: 92 SQFTLYG-ILKGNKPDFHVAMPPQKAKPFYDSLVDK 126
SQFTL KG +P F P A Y+ + K
Sbjct: 77 SQFTLAADTQKGLRPSFSKGASPALANELYEYFIQK 112
>pdb|3BBO|Q Chain Q, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 161
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 7 LPSFPINLARSRSRKLNKTQLHNRKRQ 33
LPSFPI A++++R+ ++T H R R+
Sbjct: 31 LPSFPIIEAKAKTRREDRTARHVRIRK 57
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 97 YGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSY 131
YG L N+P + P+K P Y+ +++ K+Y
Sbjct: 700 YGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAY 734
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 64 LVLVGLHEFDTDADADYVMQKKYGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSL 123
++L+ FD A ++ + Q+ +V + IL G K DFH A + F S
Sbjct: 66 ILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYAN--DSSTYFTQST 123
Query: 124 VDK 126
VDK
Sbjct: 124 VDK 126
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 64 LVLVGLHEFDTDADADYVMQKKYGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSL 123
++L+ FD A ++ + Q+ +V + IL G K DFH A + F S
Sbjct: 66 ILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYAN--DSSTYFTQST 123
Query: 124 VDK 126
VDK
Sbjct: 124 VDK 126
>pdb|1XO3|A Chain A, Solution Structure Of Ubiquitin Like Protein From Mus
Musculus
Length = 101
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 61 PGLLVLVGLHEFDTDADADYVMQKKYGVLLVSQFTLYG 98
PG+LVL+ +++ + DY +Q + +L +S TL+G
Sbjct: 65 PGILVLINDADWELLGELDYQLQDQDSILFIS--TLHG 100
>pdb|1WGK|A Chain A, Solution Structure Of Mouse Hypothetical Protein
2900073h19rik
Length = 114
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 61 PGLLVLVGLHEFDTDADADYVMQKKYGVLLVSQFTLYG 98
PG+LVL+ +++ + DY +Q + +L +S TL+G
Sbjct: 72 PGILVLINDADWELLGELDYQLQDQDSILFIS--TLHG 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,756,161
Number of Sequences: 62578
Number of extensions: 167648
Number of successful extensions: 451
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 22
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)