Query 030046
Match_columns 183
No_of_seqs 171 out of 1055
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jke_A O145, D-Tyr-trnaTyr dea 100.0 2.3E-48 7.8E-53 312.3 13.3 111 37-149 1-136 (145)
2 1j7g_A D-tyrosyl-tRNA(Tyr) dea 100.0 3.4E-48 1.2E-52 311.0 13.0 110 37-149 1-135 (144)
3 2dbo_A D-tyrosyl-tRNA(Tyr) dea 100.0 4.1E-48 1.4E-52 311.7 13.2 112 37-150 1-137 (148)
4 3ko5_A D-tyrosyl-tRNA(Tyr) dea 100.0 2.9E-47 1E-51 310.8 13.3 113 37-149 1-148 (164)
5 2okv_A Probable D-tyrosyl-tRNA 100.0 1.1E-46 3.7E-51 317.2 13.9 121 37-157 1-147 (209)
6 1tc5_A Probable eukaryotic D-a 100.0 1.5E-42 5.2E-47 289.4 9.1 119 32-150 6-186 (194)
7 2hl0_A Threonyl-tRNA synthetas 77.1 4.3 0.00015 32.3 5.5 88 56-153 32-134 (143)
8 2lbb_A Acyl COA binding protei 61.0 4.8 0.00017 29.7 2.4 38 93-131 43-94 (96)
9 3epy_A Acyl-COA-binding domain 60.5 3.7 0.00013 29.7 1.7 35 98-132 40-88 (89)
10 1hbk_A ACBP, acyl-COA binding 47.1 8.9 0.0003 27.4 1.8 34 98-131 40-87 (89)
11 2cqu_A Peroxisomal D3,D2-enoyl 37.3 24 0.00084 26.7 3.0 39 93-132 48-100 (116)
12 2cb8_A Acyl-COA-binding protei 36.3 20 0.00069 25.5 2.3 34 98-131 38-85 (87)
13 3flv_A Acyl-COA-binding domain 34.4 21 0.00072 27.3 2.3 35 98-132 64-112 (119)
14 1st7_A ACBP, acyl-COA-binding 33.5 17 0.00058 25.8 1.5 34 98-131 37-84 (86)
15 3fp5_A Acyl-COA binding protei 31.6 23 0.00077 26.4 2.0 34 98-131 44-91 (106)
16 2cop_A Acyl-coenzyme A binding 30.1 21 0.00072 26.6 1.6 35 98-132 44-92 (109)
17 2gia_B MRP1, mitochondrial RNA 28.1 25 0.00084 28.7 1.8 58 84-141 32-95 (187)
18 3eik_A Tata-box-binding protei 26.0 29 0.00099 29.0 1.9 69 102-173 96-167 (218)
19 2p1w_A 27.5 kDa virulence prot 21.5 22 0.00074 30.6 0.2 63 85-154 155-219 (250)
20 3bo6_A Hydrophilic protein, VI 20.6 23 0.00079 30.0 0.2 60 88-154 128-189 (220)
No 1
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=100.00 E-value=2.3e-48 Score=312.32 Aligned_cols=111 Identities=40% Similarity=0.567 Sum_probs=106.1
Q ss_pred ceEEEEeeceeEEEECCEEEeeECCeeEEEEecccCCCHHHHHH---------------------HHHcCCceEeecccc
Q 030046 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADY---------------------VMQKKYGVLLVSQFT 95 (183)
Q Consensus 37 MRaVIQRV~~AsV~Vdgevvg~Ig~GLLvLVGI~k~DTeed~~~---------------------v~Dv~GeILvVSQFT 95 (183)
||+|||||++|||+|||+++++|++|+|+||||+++||++|++| ++|++|+||+|||||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Ki~~lRif~de~gkmn~Sv~d~~g~iL~VSQFT 80 (145)
T 1jke_A 1 MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFT 80 (145)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEECTTSCEEECTTTTTCEEEEEECGG
T ss_pred CEEEEEEECeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCCCCCccCCHHHcCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999 567899999999999
Q ss_pred ccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccc---eeEEEEec
Q 030046 96 LYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLR 149 (183)
Q Consensus 96 L~ad~-KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~F---mqv~lv~~ 149 (183)
||||+ ||||||||.||+||+|++||++|+++|++.+ .+|++|+| |+|+|+|+
T Consensus 81 L~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~--~~V~tG~FGA~M~V~l~ND 136 (145)
T 1jke_A 81 LAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQE--MNTQTGRFAADMQVSLVND 136 (145)
T ss_dssp GGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTT--CCEEECCTTSCEEEEEEEE
T ss_pred cccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CcceeCccCCCcEEEEEeC
Confidence 99995 9999999999999999999999999999875 47999999 99999987
No 2
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase, structural genomics, hypothetical structure 2 function project, S2F; 1.64A {Haemophilus influenzae rd KW20} SCOP: c.110.1.1
Probab=100.00 E-value=3.4e-48 Score=311.00 Aligned_cols=110 Identities=35% Similarity=0.516 Sum_probs=105.4
Q ss_pred ceEEEEeeceeEEEECCEEEeeECCeeEEEEecccCCCHHHHHH---------------------HHHcCCceEeecccc
Q 030046 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADY---------------------VMQKKYGVLLVSQFT 95 (183)
Q Consensus 37 MRaVIQRV~~AsV~Vdgevvg~Ig~GLLvLVGI~k~DTeed~~~---------------------v~Dv~GeILvVSQFT 95 (183)
||+|||||++|||+|||+++++|++|+|+||||+++||++|++| ++|++|+||+|||||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Kil~lRif~de~gkmn~Sv~d~~g~iL~VSQFT 80 (144)
T 1j7g_A 1 MIALIQRVSQAKVDVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFT 80 (144)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEECTTSCEEECTTTTTCEEEEEECGG
T ss_pred CEEEEEEECeEEEEECCEEEEEECCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCcCCCccCCHHHcCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999 567899999999999
Q ss_pred ccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccc---eeEEEEec
Q 030046 96 LYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLR 149 (183)
Q Consensus 96 L~ad~-KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~F---mqv~lv~~ 149 (183)
||||+ ||||||||.||+||+|++||++|+++|++. .+|++|+| |+|+++|+
T Consensus 81 L~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~---~~V~tG~FGA~M~V~l~ND 135 (144)
T 1j7g_A 81 LAADTQKGLRPSFSKGASPALANELYEYFIQKCAEK---LPVSTGQFAADMQVSLTND 135 (144)
T ss_dssp GGCBCSSTTSCBCTTBCCHHHHHHHHHHHHHHHHTT---SCEEECCTTSCCEEEEEEE
T ss_pred cccccCCCCCCCccccCCHHHHHHHHHHHHHHHhcC---CCeeeCccCCCeEEEEEEC
Confidence 99995 999999999999999999999999999976 57999999 99999987
No 3
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=100.00 E-value=4.1e-48 Score=311.71 Aligned_cols=112 Identities=38% Similarity=0.600 Sum_probs=106.4
Q ss_pred ceEEEEeeceeEEEECCEEEeeECCeeEEEEecccCCCHHHHHH---------------------HHHcCCceEeecccc
Q 030046 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADY---------------------VMQKKYGVLLVSQFT 95 (183)
Q Consensus 37 MRaVIQRV~~AsV~Vdgevvg~Ig~GLLvLVGI~k~DTeed~~~---------------------v~Dv~GeILvVSQFT 95 (183)
||+|||||++|||+|||+++++|++|+|+||||+++||+++++| ++|++|+||+|||||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Kil~lRif~De~gkmn~Sv~d~~g~iL~VSQFT 80 (148)
T 2dbo_A 1 MRAVIQRVKKSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQFT 80 (148)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCBCCSSCSSCBCTTTTTCEEEEEECGG
T ss_pred CEEEEEEECeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhcEEeccCCCCCcccCHHHcCCCEEEEEeee
Confidence 99999999999999999999999999999999999999999999 567899999999999
Q ss_pred ccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccc---eeEEEEecc
Q 030046 96 LYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRS 150 (183)
Q Consensus 96 L~ad~-KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~F---mqv~lv~~~ 150 (183)
||||+ ||||||||.||+||+|++||++|+++|++.+ .+|++|+| |+|+|+|+=
T Consensus 81 L~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g--~~V~tG~FGA~M~V~l~NDG 137 (148)
T 2dbo_A 81 LYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESG--LKVETGIFGAMMDVFIENWG 137 (148)
T ss_dssp GGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTC--SCEEECCSSSCCEEEEEEEE
T ss_pred cccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CcceECccCCCcEEEEEECC
Confidence 99995 9999999999999999999999999999874 57999999 999999873
No 4
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A 3lmu_A 3lmv_A*
Probab=100.00 E-value=2.9e-47 Score=310.84 Aligned_cols=113 Identities=46% Similarity=0.737 Sum_probs=106.0
Q ss_pred ceEEEEeeceeEEEE----CC------EEEeeECCeeEEEEecccCCCHHHHHH---------------------HHHcC
Q 030046 37 MRAVVQRVASASVEV----EG------RLVSEIGPGLLVLVGLHEFDTDADADY---------------------VMQKK 85 (183)
Q Consensus 37 MRaVIQRV~~AsV~V----dg------evvg~Ig~GLLvLVGI~k~DTeed~~~---------------------v~Dv~ 85 (183)
||+|||||++|||+| || +++++||+|||+||||+++||+++++| ++|++
T Consensus 1 MraviQRV~~AsV~V~~~~dg~s~~~~~~vg~Ig~GllvlvGv~~~Dt~~~~~~l~~Kil~lRiF~de~gkmn~Sv~d~~ 80 (164)
T 3ko5_A 1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLN 80 (164)
T ss_dssp CEEEEEEEEEEEEEEECC--------EEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEEETTEEEEECTTTTT
T ss_pred CEEEEEEeCeEEEEEeecCCCCccccceEEEEeCCceEEEEEEcCCCCHHHHHHHHHHHhcEEeecCCCcccccCHHHcC
Confidence 999999999999999 99 899999999999999999999999999 46789
Q ss_pred CceEeeccccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccc---eeEEEEec
Q 030046 86 YGVLLVSQFTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLR 149 (183)
Q Consensus 86 GeILvVSQFTL~ad~-KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~F---mqv~lv~~ 149 (183)
|+||+|||||||||+ ||||||||.||+||+|++||++|+++|++.+.+.+|++|+| |+|+|+|+
T Consensus 81 G~iL~VSQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~fv~~lr~~~~~~~V~tG~FGA~M~V~l~ND 148 (164)
T 3ko5_A 81 YELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTND 148 (164)
T ss_dssp CEEEEEECGGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHHHSCTTSEEECCTTSCEEEEEEEE
T ss_pred CCEEEEEccccccccCCCCCCcccccCCHHHHHHHHHHHHHHHHhhCCCCceEecccCCceEEEEEEC
Confidence 999999999999995 99999999999999999999999999998876578999999 99999986
No 5
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE, ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=317.24 Aligned_cols=121 Identities=47% Similarity=0.751 Sum_probs=112.0
Q ss_pred ceEEEEeeceeEEEECCEEEeeECCeeEEEEecccCCCHHHHHH----------------------HHHcCCceEeeccc
Q 030046 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADY----------------------VMQKKYGVLLVSQF 94 (183)
Q Consensus 37 MRaVIQRV~~AsV~Vdgevvg~Ig~GLLvLVGI~k~DTeed~~~----------------------v~Dv~GeILvVSQF 94 (183)
||+|||||++|+|+|||+++++|++|||+||||+++||++|++| |.|++|+||+||||
T Consensus 1 MRaViQRV~~AsV~Vdg~vvg~Ig~GllvLvGv~~~Dt~~d~~~la~Kil~LRIF~De~GK~mn~Sv~Dv~GeiLvVSQF 80 (209)
T 2okv_A 1 MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEILCVSQF 80 (209)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCBCCTTCCTTCBCHHHHTCEEEEEECG
T ss_pred CEEEEEEeCeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCCCCCcccCCHHHcCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999 67889999999999
Q ss_pred cccccCcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccc---eeEEEEecc-cceeehh
Q 030046 95 TLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRS-FSFLYKS 157 (183)
Q Consensus 95 TL~ad~KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~F---mqv~lv~~~-~~~~~~~ 157 (183)
|||||+||||||||.||+||.|++||++|++.|++.+.+.+|++|+| |+|+|+|+= +.+++.|
T Consensus 81 TL~ad~KG~RPsF~~Aa~pe~A~~LYe~Fv~~lr~~~~~~~V~tG~FGA~M~V~LvNDGPVTi~lds 147 (209)
T 2okv_A 81 TLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGPVTIELES 147 (209)
T ss_dssp GGSCCCSSSSCCCTTBCCHHHHHHHHHHHHHHHHHHSCGGGEEECCTTSCEEEEEEEEEEEEEEEEC
T ss_pred eccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCCccEeCcccCCcEEEEEeCCCEEEEEEC
Confidence 99999999999999999999999999999999998875457999999 999999874 4455443
No 6
>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI; 1.93A {Leishmania major} SCOP: c.110.1.1
Probab=100.00 E-value=1.5e-42 Score=289.36 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=108.8
Q ss_pred cccccceEEEEeeceeEEEECCEE-EeeECCeeEEEEecccC-----CCHHHHHHH------------------------
Q 030046 32 RQINAMRAVVQRVASASVEVEGRL-VSEIGPGLLVLVGLHEF-----DTDADADYV------------------------ 81 (183)
Q Consensus 32 ~~~~~MRaVIQRV~~AsV~Vdgev-vg~Ig~GLLvLVGI~k~-----DTeed~~~v------------------------ 81 (183)
-|-++.|+|||||++|+|+|||++ +++||+|+|+||||+++ ||+++++|+
T Consensus 6 ~~~~~~r~viQRV~~AsV~Vdg~~~vg~Ig~Gllvlvgi~~~~~~~~Dt~~~~~~l~~Kil~lRIF~~~de~gkmn~~~S 85 (194)
T 1tc5_A 6 HHHMTIRVMLQAMDQGHLLVNNVDKYVRAGRGVMVYIAFLSDRDSAPITDEALRHAVGVLLHTKIFTHFSPEKMINQPQS 85 (194)
T ss_dssp --CCEEEEEEEEESEEEEECSSSSCEEEECSEEEEEEEEECCTTCCCCCHHHHHHHHHHHHHSCCBSCSCTTCSSCCCBC
T ss_pred ccceeEEEEEEEECeeEEEECCeEEEEEECCeEEEEEEEecCCCCCCCCHHHHHHHHHHhhcEEeccccCcccCcccCCC
Confidence 356789999999999999999999 99999999999999999 999999993
Q ss_pred -HHcCC-ceEeeccccccccCcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCC---------------------------
Q 030046 82 -MQKKY-GVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYN--------------------------- 132 (183)
Q Consensus 82 -~Dv~G-eILvVSQFTL~ad~KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~--------------------------- 132 (183)
.|++| +||+||||||||++||||||||.||+||+|++||++||+.|++.++
T Consensus 86 v~D~~g~eiLvVSQFTL~g~~KGrrPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
T 1tc5_A 86 LEECPEMDILIVPQASLGGKVKGRSVQFHQLVAKDVGAALYDRFCHFVRVARGVDESRVDANGAPRSEGDAPKAEGWIKY 165 (194)
T ss_dssp STTCTTCEEEEEECGGGGCEEETTEEECTTBCCHHHHHHHHHHHHHHHHHHTTCCTTSBCTTSSBSSGGGSCCSSSCCCC
T ss_pred hhhcCCCeEEEEEccccccccCCCCCCcccCCCHHHHHHHHHHHHHHHHHhhCccccccccccccccccccccccccccc
Confidence 24678 9999999999999999999999999999999999999999998852
Q ss_pred CCceecccc---eeEEEEecc
Q 030046 133 PDAIKGKCA---FQLHLVLRS 150 (183)
Q Consensus 133 ~~~Vk~G~F---mqv~lv~~~ 150 (183)
+.+|++|.| |+++|+|+=
T Consensus 166 ~~~V~tG~FGa~M~V~l~NDG 186 (194)
T 1tc5_A 166 NSRVISGTFGNRQGLRFESEG 186 (194)
T ss_dssp CSCEEECCTTSCCCEEEEESC
T ss_pred CCceeECcccCCeEEEEEeCC
Confidence 468999999 999999873
No 7
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=77.08 E-value=4.3 Score=32.29 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=57.1
Q ss_pred EeeECCeeEEEEecccCCC---HHHHHHH--------HHcCC-ceEeeccccccccCcCCCCCCCCCCCCCchHHHHHHH
Q 030046 56 VSEIGPGLLVLVGLHEFDT---DADADYV--------MQKKY-GVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSL 123 (183)
Q Consensus 56 vg~Ig~GLLvLVGI~k~DT---eed~~~v--------~Dv~G-eILvVSQFTL~ad~KGnRPsF~~Aa~Pe~A~~LYe~F 123 (183)
-+....-+++|+.|+++|+ +..+++. .+++- .|++=|=.-|.. +-++|+.|.++-...
T Consensus 32 ~~~~e~aLVvF~~VE~~De~~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAHLSs----------~La~P~~A~~iL~~l 101 (143)
T 2hl0_A 32 RGRMEEVLVAFISVEKVDEKNPEEVSLKAIEEISKVAEQVKAENVFVYPFAHLSS----------ELAKPSVAMDILNRV 101 (143)
T ss_dssp EEEEEEEEEEEEECBGGGGGCHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGCS----------SBCCHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEEccCCcCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccC----------ccCChHHHHHHHHHH
Confidence 5677889999999999998 5666662 22444 444445444443 337899999999999
Q ss_pred HHHHHhhC-CCCceecccc--eeEEEEecccce
Q 030046 124 VDKFRKSY-NPDAIKGKCA--FQLHLVLRSFSF 153 (183)
Q Consensus 124 ve~lr~~~-~~~~Vk~G~F--mqv~lv~~~~~~ 153 (183)
.+.|++.. .-.+..+|-| |..+-.=...|-
T Consensus 102 e~~L~~~g~eV~raPFGwyK~F~i~ckGHPLsE 134 (143)
T 2hl0_A 102 YQGLKERGFNVGKAPFGYYKAFKISCKGHPLAE 134 (143)
T ss_dssp HHHHHHTTCEEEECCSSEEEEEEEEECCCTTSE
T ss_pred HHHHHhCCCeEEEeCCccceeEEEEecCccHHH
Confidence 99998753 1122366766 444433333333
No 8
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=61.00 E-value=4.8 Score=29.66 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=29.8
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 030046 93 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 131 (183)
Q Consensus 93 QFTL~ad~KGnRPsF~--------------~Aa~Pe~A~~LYe~Fve~lr~~~ 131 (183)
|-| .||+.+.||++- ..+++|+|.+.|-..++++...+
T Consensus 43 QAt-~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~~~~ 94 (96)
T 2lbb_A 43 QAT-VGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLAPSW 94 (96)
T ss_dssp HTT-TSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCGGG
T ss_pred HHh-cCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchh
Confidence 444 467888999863 57999999999999998887654
No 9
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=60.50 E-value=3.7 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.1
Q ss_pred ccCcCCCCCCCC--------------CCCCCchHHHHHHHHHHHHhhCC
Q 030046 98 GILKGNKPDFHV--------------AMPPQKAKPFYDSLVDKFRKSYN 132 (183)
Q Consensus 98 ad~KGnRPsF~~--------------Aa~Pe~A~~LYe~Fve~lr~~~~ 132 (183)
||+.+.||++.+ .+++++|...|-..++++...|+
T Consensus 40 Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l~~ky~ 88 (89)
T 3epy_A 40 GDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYG 88 (89)
T ss_dssp CSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhhc
Confidence 566778888653 68999999999999999876653
No 10
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=47.08 E-value=8.9 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=27.1
Q ss_pred ccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 030046 98 GILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 131 (183)
Q Consensus 98 ad~KGnRPsF~--------------~Aa~Pe~A~~LYe~Fve~lr~~~ 131 (183)
||+.+.||++- ..|++|+|...|-..++++...+
T Consensus 40 Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 87 (89)
T 1hbk_A 40 GNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYW 87 (89)
T ss_dssp CSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccc
Confidence 67778889863 56899999999999988886554
No 11
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.33 E-value=24 Score=26.66 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.9
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhCC
Q 030046 93 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSYN 132 (183)
Q Consensus 93 QFTL~ad~KGnRPsF~--------------~Aa~Pe~A~~LYe~Fve~lr~~~~ 132 (183)
|-| .||+.+.||++- ..+++|+|...|-..++++...+.
T Consensus 48 QAt-~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm~~YI~lv~~l~~~~~ 100 (116)
T 2cqu_A 48 QAT-EGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLE 100 (116)
T ss_dssp TTT-TCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHCSCCC
T ss_pred HHh-cCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccccc
Confidence 444 367778999874 589999999999999999976654
No 12
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=36.30 E-value=20 Score=25.50 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=27.4
Q ss_pred ccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 030046 98 GILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 131 (183)
Q Consensus 98 ad~KGnRPsF~--------------~Aa~Pe~A~~LYe~Fve~lr~~~ 131 (183)
||+.+.||++- ..+++++|...|-..++++...+
T Consensus 38 Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~~~~ 85 (87)
T 2cb8_A 38 GDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85 (87)
T ss_dssp CSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56777888753 56899999999999999887654
No 13
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=34.40 E-value=21 Score=27.29 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=28.9
Q ss_pred ccCcCCCCCCCC--------------CCCCCchHHHHHHHHHHHHhhCC
Q 030046 98 GILKGNKPDFHV--------------AMPPQKAKPFYDSLVDKFRKSYN 132 (183)
Q Consensus 98 ad~KGnRPsF~~--------------Aa~Pe~A~~LYe~Fve~lr~~~~ 132 (183)
||+...||++-+ .+++++|+..|-..++++.+.++
T Consensus 64 Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~~v~~l~~~~~ 112 (119)
T 3flv_A 64 GPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112 (119)
T ss_dssp CSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhhCC
Confidence 566788998754 58999999999999999987764
No 14
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=33.48 E-value=17 Score=25.76 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=27.3
Q ss_pred ccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 030046 98 GILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 131 (183)
Q Consensus 98 ad~KGnRPsF~--------------~Aa~Pe~A~~LYe~Fve~lr~~~ 131 (183)
||+.+.||++- ..|++++|...|-..++++...+
T Consensus 37 Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 84 (86)
T 1st7_A 37 GDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKY 84 (86)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 67778888863 57899999999999999887654
No 15
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=31.55 E-value=23 Score=26.41 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=27.2
Q ss_pred ccCcCCCCCCCC--------------CCCCCchHHHHHHHHHHHHhhC
Q 030046 98 GILKGNKPDFHV--------------AMPPQKAKPFYDSLVDKFRKSY 131 (183)
Q Consensus 98 ad~KGnRPsF~~--------------Aa~Pe~A~~LYe~Fve~lr~~~ 131 (183)
||+.+.||+|.+ .+++++|...|-..++.+...+
T Consensus 44 Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~~v~~l~~~~ 91 (106)
T 3fp5_A 44 GDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKLLEILKKA 91 (106)
T ss_dssp CSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhccc
Confidence 567778898743 6889999999999999886554
No 16
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.11 E-value=21 Score=26.56 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=28.7
Q ss_pred ccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhCC
Q 030046 98 GILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSYN 132 (183)
Q Consensus 98 ad~KGnRPsF~--------------~Aa~Pe~A~~LYe~Fve~lr~~~~ 132 (183)
||+.+.||++- ..|++|+|...|-..++++...+.
T Consensus 44 Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~YI~lv~~l~~~~~ 92 (109)
T 2cop_A 44 GNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWN 92 (109)
T ss_dssp CSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 56777888763 578999999999999999976664
No 17
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=28.10 E-value=25 Score=28.74 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=34.3
Q ss_pred cCCceEeeccccccccC----cCCCCCCCCCCCCCc--hHHHHHHHHHHHHhhCCCCceecccc
Q 030046 84 KKYGVLLVSQFTLYGIL----KGNKPDFHVAMPPQK--AKPFYDSLVDKFRKSYNPDAIKGKCA 141 (183)
Q Consensus 84 v~GeILvVSQFTL~ad~----KGnRPsF~~Aa~Pe~--A~~LYe~Fve~lr~~~~~~~Vk~G~F 141 (183)
++|..|+||||--.|-+ +-.-|+|...-.-.. -.-=.-.|+.-|+...+.-.+++-.|
T Consensus 32 VDGK~LLvSQ~PQLGPRk~DPND~tPQFD~dRRiS~R~RHvDLA~lV~V~e~r~p~h~m~n~ay 95 (187)
T 2gia_B 32 VDGKLLLISQYPQLGPRKVDPNDLSPQFDADRRISVRLRHVDLAYLVGVCKERVPRHRMETKAY 95 (187)
T ss_dssp EETTEEEEEEEEBCSSCCCCTTCCSCSBCGGGCEEEECCHHHHHHHHHHHTTSSSEEEEECSSC
T ss_pred ecceeeeehhCcccCCCcCCCCcCCccccccceeeEEeeecchhhheeehhccCchhhhcccce
Confidence 68999999999999863 567788864322111 01112457766765544333444444
No 18
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=25.98 E-value=29 Score=29.02 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccceeEEEEecccceeehhhHHHHHHH---Hhhhcccc
Q 030046 102 GNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCAFQLHLVLRSFSFLYKSRLFILSRL---FSMYKPWL 173 (183)
Q Consensus 102 GnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~Fmqv~lv~~~~~~~~~~~~~~~~~~---~~~~~~~~ 173 (183)
..+---+.|-+.|+|+.-.+++.+.|++.. .+++.-. +.+..++.|++.=++-+|--|+.. +.+|.|=+
T Consensus 96 SGKiV~TGAkS~e~a~~A~~ki~~~L~~lG--~~v~~~~-fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~ 167 (218)
T 3eik_A 96 SGKMVITGAKSEKSSRMAAQRYAKIIHKLG--FNATFDD-FKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPEL 167 (218)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHHHHTT--CCCCCEE-EEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTT
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHHHcC--CCccccc-ceEEEEEEEEECCCcCcHHHHHHhccCCcEECCcc
Confidence 334455677889999999999999998763 3565544 699999999999999888777753 57888854
No 19
>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis}
Probab=21.52 E-value=22 Score=30.65 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=34.3
Q ss_pred CCceEeecccccccc--CcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccceeEEEEeccccee
Q 030046 85 KYGVLLVSQFTLYGI--LKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCAFQLHLVLRSFSFL 154 (183)
Q Consensus 85 ~GeILvVSQFTL~ad--~KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~Fmqv~lv~~~~~~~ 154 (183)
+-.|=+=-|||||.+ ++-+ +| +|+.. .-...|++.|+......-|..|..=+-+.--++.+|+
T Consensus 155 qsRV~~GAQfTLY~Kpd~eds--qY----s~~~l-~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~~W~ya 219 (250)
T 2p1w_A 155 QARVSLGAQFTLYIKPDQENS--QY----SASFL-HKTRQFIECLESRLSENGVISGQCPESDVHPENWKYL 219 (250)
T ss_dssp TTCCCSSCCEEEECCCSSTTS--CC----CHHHH-HHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCTTCSSE
T ss_pred hhhhcccceEEEEecCccccc--cC----CHHHH-HHHHHHHHHHHHHHHHcCCCCCCCCccccCcccccee
Confidence 344444569999984 3211 22 22223 3347888888765433336677764444445555543
No 20
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=20.61 E-value=23 Score=29.96 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=31.7
Q ss_pred eEeecccccccc--CcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCceecccceeEEEEeccccee
Q 030046 88 VLLVSQFTLYGI--LKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCAFQLHLVLRSFSFL 154 (183)
Q Consensus 88 ILvVSQFTL~ad--~KGnRPsF~~Aa~Pe~A~~LYe~Fve~lr~~~~~~~Vk~G~Fmqv~lv~~~~~~~ 154 (183)
|=+=-|||||.+ +.-+ +| +|+.. .-...|++.|+......-|..|..=+-+.--++.+|+
T Consensus 128 V~~GAQfTLY~Kpd~eds--qY----s~~~l-~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~~W~ya 189 (220)
T 3bo6_A 128 VAVGAQFTLYVKPDQENS--QY----SASSL-HNTRQFIECLESRLSESGLMPGQYPESDVHPENWKYV 189 (220)
T ss_dssp TTSSCCEEEECCCSSTTS--CC----CHHHH-HHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCTTCSSE
T ss_pred hcccceEEEEecCccccc--cC----CHHHH-HHHHHHHHHHHHHHHHcCCCCCCCCccccCcccccee
Confidence 333459999984 2211 22 22323 3347788888665433335677764444444554443
Done!