BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030047
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 56 FRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVSSK 115
F GD +L Y+ ++ ++ +E+++SCN S+P YT G D IPL G YF+
Sbjct: 30 FHVGDSLLFNYNNKFHNVLQVD-QEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGI 88
Query: 116 YDNCKNGLKLHVNVLP 131
+C+ G K+ + V P
Sbjct: 89 PGHCQLGQKVEIKVDP 104
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 54 RVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIP-LDGEGIHYFV 112
+ FR GD + + ++ E+++K+ +++CN N VI LD G+HYFV
Sbjct: 30 KTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFV 89
Query: 113 SSKYDNCKNGLKLHVNVL 130
+ +C NG KL +NV+
Sbjct: 90 CTVGTHCSNGQKLSINVV 107
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 54 RVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVS 113
+ FRAGD +L Y+P+ ++ + ++ + +CN ++YT G D I L +G YF+
Sbjct: 22 KRFRAGDILLFNYNPSMHNVVVV-NQGGFSTCNTPAGAKVYTSGRDQIKLP-KGQSYFIC 79
Query: 114 SKYDNCKNGLKLHVNVL 130
+ +C++G+K+ VN L
Sbjct: 80 NFPGHCQSGMKIAVNAL 96
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 54 RVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVS 113
+ FRAGD ++ Y Q ++ + + Y SC+ R Y+ G D I L G +YF+
Sbjct: 17 KSFRAGDVLVFKYIKGQHNVVAVNGRG-YASCSAPRGARTYSSGQDRIKLT-RGQNYFIC 74
Query: 114 SKYDNCKNGLKLHVNV 129
S +C G+K+ +N
Sbjct: 75 SFPGHCGGGMKIAINA 90
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 54 RVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVS 113
+ FR GD++ ++ +A + +K+ +++C NPI T I L+ G Y++
Sbjct: 28 KTFRVGDELEFDFAAGMHDVA-VVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYIC 86
Query: 114 SKYDNCKNGLKLHVNVL 130
+ D+C+ G KL +NV+
Sbjct: 87 TVGDHCRVGQKLSINVV 103
>pdb|4E8O|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
pdb|4E8O|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
Length = 167
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 63 LLAYSPAQESIAELQSKEEYESCN--VSNPIRMYTDGLDVIP 102
LLAY+ Q++IA L++ YE N ++P+ + +G+ V+P
Sbjct: 66 LLAYTDTQQAIAMLEASIRYEYVNGTQTSPV-AFLEGIFVLP 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,766,138
Number of Sequences: 62578
Number of extensions: 166041
Number of successful extensions: 377
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 7
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)