Query 030047
Match_columns 183
No_of_seqs 189 out of 833
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 6.7E-46 1.5E-50 300.1 15.2 104 27-132 17-120 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 5.1E-34 1.1E-38 207.8 2.7 82 41-123 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.8 1.7E-07 3.6E-12 71.8 12.1 88 29-130 29-119 (119)
4 PF00127 Copper-bind: Copper b 98.3 1.5E-06 3.2E-11 64.1 6.1 75 52-130 17-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.3 6E-06 1.3E-10 61.0 9.2 89 32-130 2-99 (99)
6 COG3794 PetE Plastocyanin [Ene 98.2 1.5E-05 3.2E-10 62.5 10.1 70 52-130 54-127 (128)
7 TIGR03102 halo_cynanin halocya 98.2 1.3E-05 2.7E-10 61.7 9.2 89 28-130 21-115 (115)
8 TIGR02375 pseudoazurin pseudoa 98.0 4.8E-05 1E-09 58.5 8.4 75 52-132 15-89 (116)
9 TIGR02657 amicyanin amicyanin. 97.1 0.0041 8.8E-08 44.4 8.2 71 52-130 11-83 (83)
10 TIGR03095 rusti_cyanin rusticy 96.9 0.0052 1.1E-07 49.0 7.5 73 54-130 54-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.4 0.022 4.7E-07 47.7 8.1 86 46-132 77-188 (196)
12 KOG3858 Ephrin, ligand for Eph 96.0 0.11 2.3E-06 44.7 10.7 78 56-134 47-164 (233)
13 COG4454 Uncharacterized copper 95.5 0.43 9.4E-06 38.8 11.8 126 4-131 2-158 (158)
14 PF13473 Cupredoxin_1: Cupredo 94.7 0.024 5.2E-07 41.7 2.4 64 52-129 35-104 (104)
15 TIGR03094 sulfo_cyanin sulfocy 94.4 0.21 4.6E-06 41.6 7.5 29 104-132 159-187 (195)
16 PF00812 Ephrin: Ephrin; Inte 94.1 0.033 7.2E-07 44.5 2.1 75 55-130 25-144 (145)
17 TIGR03096 nitroso_cyanin nitro 93.0 0.38 8.2E-06 38.1 6.4 58 51-120 60-123 (135)
18 TIGR02376 Cu_nitrite_red nitri 87.9 1.8 3.8E-05 38.3 6.6 76 54-133 61-148 (311)
19 TIGR02695 azurin azurin. Azuri 86.9 4.8 0.0001 31.6 7.8 29 99-128 91-124 (125)
20 PRK10378 inactive ferrous ion 83.8 9.6 0.00021 35.0 9.4 71 52-131 44-117 (375)
21 PRK02888 nitrous-oxide reducta 82.7 3.8 8.2E-05 40.0 6.6 67 53-131 556-634 (635)
22 PLN02354 copper ion binding / 80.7 16 0.00035 34.9 10.1 79 54-133 60-148 (552)
23 PF07732 Cu-oxidase_3: Multico 80.6 2.2 4.7E-05 32.4 3.4 78 54-132 28-116 (117)
24 PLN00044 multi-copper oxidase- 79.6 22 0.00047 34.6 10.6 75 54-133 62-150 (596)
25 PF00116 COX2: Cytochrome C ox 76.9 4 8.8E-05 31.1 4.0 65 52-129 46-119 (120)
26 cd06555 ASCH_PF0470_like ASC-1 74.1 2.9 6.2E-05 31.9 2.5 31 54-84 30-61 (109)
27 PLN02604 oxidoreductase 72.9 22 0.00048 34.0 8.7 80 52-133 55-146 (566)
28 TIGR01480 copper_res_A copper- 72.1 28 0.00062 33.6 9.2 77 53-132 77-163 (587)
29 TIGR02866 CoxB cytochrome c ox 71.4 7.4 0.00016 32.0 4.5 31 100-132 160-193 (201)
30 COG1622 CyoA Heme/copper-type 70.9 12 0.00026 32.3 5.8 88 33-133 116-214 (247)
31 PF02839 CBM_5_12: Carbohydrat 69.0 3 6.5E-05 25.5 1.3 18 47-64 1-18 (41)
32 TIGR03388 ascorbase L-ascorbat 68.1 17 0.00037 34.5 6.7 76 53-133 33-123 (541)
33 MTH00047 COX2 cytochrome c oxi 66.4 8.3 0.00018 32.1 3.8 32 100-133 159-193 (194)
34 TIGR02228 sigpep_I_arch signal 64.3 27 0.00058 28.0 6.3 23 54-76 59-85 (158)
35 PF07172 GRP: Glycine rich pro 62.8 7.4 0.00016 28.9 2.6 12 1-12 1-12 (95)
36 PF12961 DUF3850: Domain of Un 60.1 5.4 0.00012 28.4 1.4 14 52-65 25-38 (72)
37 PLN02191 L-ascorbate oxidase 57.7 44 0.00095 32.1 7.5 78 54-132 56-144 (574)
38 PF10377 ATG11: Autophagy-rela 49.7 27 0.00058 27.1 3.9 18 54-71 41-58 (129)
39 PLN02835 oxidoreductase 48.6 2.5E+02 0.0054 26.8 12.5 78 54-132 62-149 (539)
40 KOG3342 Signal peptidase I [In 46.3 59 0.0013 26.7 5.4 22 55-76 77-102 (180)
41 PRK13838 conjugal transfer pil 45.1 18 0.00039 29.5 2.4 16 53-68 48-63 (176)
42 MTH00140 COX2 cytochrome c oxi 44.9 29 0.00062 29.3 3.6 31 100-132 183-216 (228)
43 TIGR01480 copper_res_A copper- 44.2 66 0.0014 31.2 6.4 85 41-129 488-586 (587)
44 PLN00044 multi-copper oxidase- 40.6 72 0.0016 31.0 6.0 41 94-134 496-538 (596)
45 PLN02168 copper ion binding / 40.5 1.3E+02 0.0029 28.8 7.8 79 54-133 59-147 (545)
46 PF02362 B3: B3 DNA binding do 39.8 30 0.00066 24.3 2.6 19 52-70 70-88 (100)
47 MTH00154 COX2 cytochrome c oxi 39.0 39 0.00084 28.6 3.6 30 100-131 183-215 (227)
48 PTZ00047 cytochrome c oxidase 39.0 43 0.00093 27.4 3.6 30 100-131 116-148 (162)
49 MTH00168 COX2 cytochrome c oxi 37.8 44 0.00095 28.2 3.7 31 100-132 183-216 (225)
50 MTH00139 COX2 cytochrome c oxi 36.4 45 0.00098 28.1 3.6 30 100-131 183-215 (226)
51 MTH00129 COX2 cytochrome c oxi 36.0 42 0.00092 28.5 3.3 30 100-131 183-215 (230)
52 KOG1263 Multicopper oxidases [ 35.9 1.9E+02 0.0042 28.0 8.1 77 54-136 61-152 (563)
53 MTH00117 COX2 cytochrome c oxi 35.6 49 0.0011 28.0 3.7 30 100-131 183-215 (227)
54 PLN02792 oxidoreductase 35.6 1.6E+02 0.0034 28.2 7.4 78 54-132 49-136 (536)
55 MTH00098 COX2 cytochrome c oxi 35.4 50 0.0011 28.0 3.7 30 100-131 183-215 (227)
56 PF14326 DUF4384: Domain of un 34.8 31 0.00067 24.2 2.0 17 55-71 2-18 (83)
57 MTH00038 COX2 cytochrome c oxi 34.4 55 0.0012 27.7 3.8 30 100-131 183-215 (229)
58 PF07172 GRP: Glycine rich pro 34.0 30 0.00064 25.7 1.8 15 8-22 4-18 (95)
59 TIGR03389 laccase laccase, pla 33.1 1.7E+02 0.0038 27.7 7.3 82 55-138 37-129 (539)
60 TIGR01433 CyoA cytochrome o ub 32.8 52 0.0011 27.9 3.4 30 100-131 182-214 (226)
61 smart00495 ChtBD3 Chitin-bindi 31.7 33 0.00072 20.8 1.5 18 47-64 1-18 (41)
62 TIGR01653 lactococcin_972 bact 31.0 57 0.0012 24.2 2.9 8 30-37 27-34 (92)
63 PLN02991 oxidoreductase 30.6 2.2E+02 0.0049 27.3 7.6 82 55-138 62-154 (543)
64 MTH00023 COX2 cytochrome c oxi 30.4 66 0.0014 27.5 3.6 31 100-132 194-227 (240)
65 TIGR01432 QOXA cytochrome aa3 30.2 52 0.0011 27.5 2.9 31 100-132 173-206 (217)
66 COG3627 PhnJ Uncharacterized e 29.3 32 0.00068 29.7 1.4 24 99-122 257-280 (291)
67 KOG2315 Predicted translation 29.1 1.1E+02 0.0023 29.7 5.1 62 51-113 210-277 (566)
68 MTH00008 COX2 cytochrome c oxi 28.7 70 0.0015 27.1 3.5 30 100-131 183-215 (228)
69 KOG1263 Multicopper oxidases [ 28.2 97 0.0021 30.0 4.7 45 93-137 497-543 (563)
70 MTH00076 COX2 cytochrome c oxi 27.2 76 0.0016 26.9 3.4 30 100-131 183-215 (228)
71 MTH00051 COX2 cytochrome c oxi 27.2 70 0.0015 27.2 3.2 30 100-131 187-219 (234)
72 PRK09723 putative fimbrial-lik 25.0 5.8E+02 0.013 24.0 9.8 36 5-41 3-38 (421)
73 PF05382 Amidase_5: Bacterioph 24.8 1.7E+02 0.0037 23.3 4.8 35 54-89 74-113 (145)
74 PF00686 CBM_20: Starch bindin 24.2 87 0.0019 22.2 2.8 39 29-67 15-67 (96)
75 PF10731 Anophelin: Thrombin i 23.8 82 0.0018 21.8 2.4 15 28-42 20-34 (65)
76 MTH00027 COX2 cytochrome c oxi 23.5 1.1E+02 0.0023 26.7 3.7 31 100-132 217-250 (262)
77 PF12071 DUF3551: Protein of u 23.5 1E+02 0.0022 22.2 3.0 27 25-51 22-51 (82)
78 PF11766 Candida_ALS_N: Cell-w 22.9 25 0.00055 30.5 -0.3 36 53-88 6-47 (249)
79 PLN02792 oxidoreductase 22.4 1.2E+02 0.0027 28.9 4.2 42 94-135 466-509 (536)
80 PRK10883 FtsI repressor; Provi 22.1 4.2E+02 0.009 24.8 7.6 73 54-133 79-167 (471)
81 PRK11372 lysozyme inhibitor; P 21.9 3.5E+02 0.0076 20.3 7.0 38 59-100 50-89 (109)
82 PF09792 But2: Ubiquitin 3 bin 21.8 1.2E+02 0.0026 23.9 3.4 32 100-134 100-131 (143)
83 PF02933 CDC48_2: Cell divisio 21.2 74 0.0016 21.1 1.8 17 52-68 15-31 (64)
84 PRK10861 signal peptidase I; P 20.8 2.3E+02 0.0049 25.6 5.3 16 53-68 123-138 (324)
85 cd05808 CBM20_alpha_amylase Al 20.7 1.1E+02 0.0024 21.4 2.7 38 30-67 15-62 (95)
86 MTH00185 COX2 cytochrome c oxi 20.6 1.3E+02 0.0027 25.6 3.5 30 100-131 183-215 (230)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=6.7e-46 Score=300.08 Aligned_cols=104 Identities=29% Similarity=0.643 Sum_probs=99.5
Q ss_pred cccceEEEecCCCCCCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCc
Q 030047 27 AAAQVHHVVGGDRGWDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGE 106 (183)
Q Consensus 27 ~a~a~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~ 106 (183)
.+.+++|+|||+.||+++.||++|+++|+|++||+|+|+|++++|||+|| +|++|++|+.++|+..|++|++.|+|+++
T Consensus 17 ~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V-~~~~Y~~C~~~~pi~~~tsG~d~v~L~~~ 95 (167)
T PLN03148 17 ATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEV-NQTGYDNCTTEGAAGNWTSGKDFIPLNKA 95 (167)
T ss_pred hccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEE-ChHHcCcccCCCCcceecCCCcEEEecCC
Confidence 45789999999999999899999999999999999999999999999997 99999999999999999999999999999
Q ss_pred cceEEEcCCCCCcCCCCeEEEEecCC
Q 030047 107 GIHYFVSSKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 107 G~~YFic~v~~HC~~GmKl~I~V~~~ 132 (183)
|+|||||+ .+||++||||+|+|.+.
T Consensus 96 G~~YFIcg-~ghC~~GmKl~I~V~~~ 120 (167)
T PLN03148 96 KRYYFICG-NGQCFNGMKVTILVHPL 120 (167)
T ss_pred ccEEEEcC-CCccccCCEEEEEEcCC
Confidence 99999999 69999999999999764
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.98 E-value=5.1e-34 Score=207.77 Aligned_cols=82 Identities=38% Similarity=0.868 Sum_probs=68.7
Q ss_pred CCCCC---CCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCccceEEEcCCCC
Q 030047 41 WDSSS---DVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVSSKYD 117 (183)
Q Consensus 41 W~~~~---~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~YFic~v~~ 117 (183)
|+++. +|++||++++|+|||+|+|+|++++|+|+|| +|++|++|+.++|+..+++|++.|+|+++|++||||++++
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEV-SKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEE-SHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEec-ChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 88876 9999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 030047 118 NCKNGL 123 (183)
Q Consensus 118 HC~~Gm 123 (183)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.78 E-value=1.7e-07 Score=71.76 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=58.2
Q ss_pred cceEEEecCCCCC-CCCCCCcccCCCCeEEeCCEEEEEEc-CCCCceEEecccccCCCCCCCCCcccccCCC-eEEEcCC
Q 030047 29 AQVHHVVGGDRGW-DSSSDVASWSAGRVFRAGDKILLAYS-PAQESIAELQSKEEYESCNVSNPIRMYTDGL-DVIPLDG 105 (183)
Q Consensus 29 ~a~~~~VGg~~GW-~~~~~Y~~Wa~~~~F~vGD~LvF~y~-~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~-~~v~L~~ 105 (183)
...+..+|.+.|+ .+. .+..++++||++.|... ...||++ .... +....+ . .....|. ..++++.
T Consensus 29 ~~~~V~~~~~~~~~~F~------P~~i~v~~Gd~V~~~N~~~~~H~v~-~~~~---~~~~~~-~-~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 29 ETVEVKMGSDAGMLAFE------PSTLTIKAGDTVKWVNNKLAPHNAV-FDGA---KELSHK-D-LAFAPGESWEETFSE 96 (119)
T ss_pred ceEEEEEccCCCeeEEe------CCEEEEcCCCEEEEEECCCCCceEE-ecCC---cccccc-c-cccCCCCEEEEEecC
Confidence 3344456655544 233 26679999999999874 4679987 3211 111111 1 1233443 4788899
Q ss_pred ccceEEEcCCCCCcCCCCeEEEEec
Q 030047 106 EGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 106 ~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+|.|-|+|. .|=+.|||..|.|.
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999998 79999999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.32 E-value=1.5e-06 Score=64.12 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCCeEEeCCEEEEEE-cCCCCceEEecccccC---CCCCCCCC---cccccCCC-eEEEcCCccceEEEcCCCCCcCCCC
Q 030047 52 AGRVFRAGDKILLAY-SPAQESIAELQSKEEY---ESCNVSNP---IRMYTDGL-DVIPLDGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y-~~~~h~V~ev~~k~~Y---~~C~~s~~---~~~~~~G~-~~v~L~~~G~~YFic~v~~HC~~Gm 123 (183)
+..++++||++.|.. +...||++.. + ... ..++...+ ......|. ..++++++|.|.|+|. + |...||
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~-~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM 92 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFV-A-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGM 92 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEE-T-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTS
T ss_pred CEEEECCCCEEEEEECCCCCceEEEe-c-ccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCC
Confidence 456899999999999 5678999954 2 111 11211111 11233454 3678889999999999 8 999999
Q ss_pred eEEEEec
Q 030047 124 KLHVNVL 130 (183)
Q Consensus 124 Kl~I~V~ 130 (183)
+-.|.|.
T Consensus 93 ~G~i~V~ 99 (99)
T PF00127_consen 93 VGTIIVE 99 (99)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.31 E-value=6e-06 Score=60.97 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=57.4
Q ss_pred EEEecCCCC-CCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEecccccCCC------CCCCCCcccccCCC-eEEE
Q 030047 32 HHVVGGDRG-WDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEEYES------CNVSNPIRMYTDGL-DVIP 102 (183)
Q Consensus 32 ~~~VGg~~G-W~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~Y~~------C~~s~~~~~~~~G~-~~v~ 102 (183)
+..+|.+.| -.+.+ +..++++||++.|.... ..|+++ ..+. .... ....+.......|. ..++
T Consensus 2 ~v~~g~~~g~~~F~P------~~i~v~~G~~V~~~N~~~~~H~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~pG~t~~~t 73 (99)
T TIGR02656 2 TVKMGADKGALVFEP------AKISIAAGDTVEWVNNKGGPHNVV-FDED-AVPAGVKELAKSLSHKDLLNSPGESYEVT 73 (99)
T ss_pred EEEEecCCCceeEeC------CEEEECCCCEEEEEECCCCCceEE-ECCC-CCccchhhhcccccccccccCCCCEEEEE
Confidence 445665333 44443 56799999999999653 679998 3222 1110 11100011223344 4688
Q ss_pred cCCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 103 LDGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 103 L~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
++.+|.|-|+|. +|++.||+..|.|.
T Consensus 74 F~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 74 FSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred eCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 889999999998 89999999999984
No 6
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.22 E-value=1.5e-05 Score=62.49 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCCeEEeCCEEEEEEcCC-CCceEEecccccCCCCCCCCCcccccCC--C-eEEEcCCccceEEEcCCCCCcCCCCeEEE
Q 030047 52 AGRVFRAGDKILLAYSPA-QESIAELQSKEEYESCNVSNPIRMYTDG--L-DVIPLDGEGIHYFVSSKYDNCKNGLKLHV 127 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~~Y~~C~~s~~~~~~~~G--~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I 127 (183)
+..+..+||++.|.+... .|||.-. ... +. .....+..+ . .+.+++++|.|.|+|.- |=..|||-.|
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~-~~~-----~~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~I 124 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAV-GGM-----DP-EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKI 124 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEe-CCC-----Cc-ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEE
Confidence 668999999999999987 9999954 322 11 111222222 2 47889999999999986 9999999999
Q ss_pred Eec
Q 030047 128 NVL 130 (183)
Q Consensus 128 ~V~ 130 (183)
.|.
T Consensus 125 vV~ 127 (128)
T COG3794 125 VVG 127 (128)
T ss_pred EeC
Confidence 986
No 7
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.21 E-value=1.3e-05 Score=61.68 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=61.8
Q ss_pred ccceEEEec--CCC-CCCCCCCCcccCCCCeEEeCCEEEEEEcC--CCCceEEecccccCCCCCCCCCcccccCC-CeEE
Q 030047 28 AAQVHHVVG--GDR-GWDSSSDVASWSAGRVFRAGDKILLAYSP--AQESIAELQSKEEYESCNVSNPIRMYTDG-LDVI 101 (183)
Q Consensus 28 a~a~~~~VG--g~~-GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~--~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G-~~~v 101 (183)
+...+..|| ++. +..+.+ +..++++||++.|+++. ..|+|.- .+...|++ .. .....| .-.+
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s-~~~~~f~s----~~-~~~~~G~t~s~ 88 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVS-DGDGDLDE----SE-RVSEEGTTYEH 88 (115)
T ss_pred CceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEE-CCCCCccc----cc-cccCCCCEEEE
Confidence 355678888 322 344443 55799999999999864 5799983 23334441 11 122334 3578
Q ss_pred EcCCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 102 PLDGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 102 ~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+++++|.|-|+|.. |=..|||-.|.|.
T Consensus 89 Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 89 TFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 99999999999985 8778999999984
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.97 E-value=4.8e-05 Score=58.51 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCccceEEEcCCCCCcCCCCeEEEEecC
Q 030047 52 AGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLP 131 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 131 (183)
+..++++||++.|.+....|+|.... ...-+. .+....-.+..-.++++++|.|-|.|. .|=..||+-.|+|..
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~-~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIK-GMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEcc-CCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 55789999999999988789998431 111111 111111112224788999999999998 699999999999987
Q ss_pred C
Q 030047 132 Q 132 (183)
Q Consensus 132 ~ 132 (183)
+
T Consensus 89 ~ 89 (116)
T TIGR02375 89 P 89 (116)
T ss_pred C
Confidence 3
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.12 E-value=0.0041 Score=44.36 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCCeEEeCCEEEEEEcCC-CCceEEecccccCCCCCCCCCcccccCCC-eEEEcCCccceEEEcCCCCCcCCCCeEEEEe
Q 030047 52 AGRVFRAGDKILLAYSPA-QESIAELQSKEEYESCNVSNPIRMYTDGL-DVIPLDGEGIHYFVSSKYDNCKNGLKLHVNV 129 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V 129 (183)
+..+.++||+|.|+.+.. .|||.-. +. ....=+...+ ....|. ..++++++|+|-|.|.... +||-.|.|
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~-~g-~~~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V 82 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFV-AG-VLGEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVV 82 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEec-CC-CCcccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEE
Confidence 346889999999998854 7999832 22 1111011111 223344 4789999999999999844 49999987
Q ss_pred c
Q 030047 130 L 130 (183)
Q Consensus 130 ~ 130 (183)
.
T Consensus 83 ~ 83 (83)
T TIGR02657 83 E 83 (83)
T ss_pred C
Confidence 4
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.86 E-value=0.0052 Score=48.96 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=48.0
Q ss_pred CeEEeCCEEEEEEcCC----CCceEEecccc-cCC------------CCCCCCCcccccCC-----CeEEEcCCccceEE
Q 030047 54 RVFRAGDKILLAYSPA----QESIAELQSKE-EYE------------SCNVSNPIRMYTDG-----LDVIPLDGEGIHYF 111 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~----~h~V~ev~~k~-~Y~------------~C~~s~~~~~~~~G-----~~~v~L~~~G~~YF 111 (183)
.+++.||++.|...+. .|+.... ++. .+. .|....+ -.+| .-+++.+++|+|||
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~-~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywy 129 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDIS-KRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWY 129 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEee-cCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEE
Confidence 3578899999998764 5666632 211 110 1211111 1122 23677789999999
Q ss_pred EcCCCCCcCCCCeEEEEec
Q 030047 112 VSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 112 ic~v~~HC~~GmKl~I~V~ 130 (183)
.|.+++|=+.||+-.|.|.
T Consensus 130 hC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 130 LCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EcCChhHHHCCCEEEEEEC
Confidence 9999999999999888873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.35 E-value=0.022 Score=47.74 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCcccCCCC---eEEeCCEEEEEEcCC---CCceEEecccccCCCCCCC---CCcccc-------------cCCCeE---
Q 030047 46 DVASWSAGR---VFRAGDKILLAYSPA---QESIAELQSKEEYESCNVS---NPIRMY-------------TDGLDV--- 100 (183)
Q Consensus 46 ~Y~~Wa~~~---~F~vGD~LvF~y~~~---~h~V~ev~~k~~Y~~C~~s---~~~~~~-------------~~G~~~--- 100 (183)
||+.-+.++ -.-.|-++.|+|.+. .|++.-+.+...+.++..- +.+..+ ..|...
T Consensus 77 nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~ 156 (196)
T PF06525_consen 77 NFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGV 156 (196)
T ss_pred eeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEE
Confidence 444444443 233788888888763 5998866555555555321 111110 123321
Q ss_pred E-EcCCccceEEEcCCCCCcCCCCeEEEEecCC
Q 030047 101 I-PLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 101 v-~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 132 (183)
+ .| .+|.||++|+++||=+.||-..+.|.+.
T Consensus 157 ~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 157 YNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EccC-CCceEEEEccCCChhhcCCEEEEEEecC
Confidence 2 23 4999999999999999999999998865
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.98 E-value=0.11 Score=44.69 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=46.2
Q ss_pred EEeCCEEEEE---EcCC-C----CceEEecccccCCCCCC-CCCccccc------------------CCCeEEEcCCcc-
Q 030047 56 FRAGDKILLA---YSPA-Q----ESIAELQSKEEYESCNV-SNPIRMYT------------------DGLDVIPLDGEG- 107 (183)
Q Consensus 56 F~vGD~LvF~---y~~~-~----h~V~ev~~k~~Y~~C~~-s~~~~~~~------------------~G~~~v~L~~~G- 107 (183)
.++||.|-+- |+.+ . +.++=.|++++|+.|+. +.+...+. .-...+... +|
T Consensus 47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~-pG~ 125 (233)
T KOG3858|consen 47 VQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQ-PGH 125 (233)
T ss_pred eccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCcccc-CCC
Confidence 4468888774 3332 1 23343569999999996 44433331 111122333 67
Q ss_pred ceEEEcC-----------CCCCcCC-CCeEEEEecCCCC
Q 030047 108 IHYFVSS-----------KYDNCKN-GLKLHVNVLPQPH 134 (183)
Q Consensus 108 ~~YFic~-----------v~~HC~~-GmKl~I~V~~~~~ 134 (183)
+|||||+ .++-|.. .||+.+.|...+.
T Consensus 126 ~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 126 TYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred eEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 5888887 2355665 6999999987544
No 13
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.43 Score=38.75 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccceEEEecCCCC---CCC-------CCCCcc---cCCCCeEEeCCEEEEEEcCC-
Q 030047 4 VRMVKALVMIMAVALSLGLGGQWAAAQVHHVVGGDRG---WDS-------SSDVAS---WSAGRVFRAGDKILLAYSPA- 69 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~VGg~~G---W~~-------~~~Y~~---Wa~~~~F~vGD~LvF~y~~~- 69 (183)
.|+...|+..+++...++.+...+.......||+..- =+. +.+|-+ =.+...++.|-+.+|.-.+.
T Consensus 2 ~~~~~~~l~a~~~~~a~~~~~v~~~~~~~~~vg~~~~v~a~~~ti~~~~~~~~lg~m~f~p~~~~v~aG~tv~~v~~n~~ 81 (158)
T COG4454 2 FRMIRAILLAALASPALAAGSVQAGSLVVMAVGKTGAVIAATQTITVAMKGTDLGKMSFKPSSFEVKAGETVRFVLKNEG 81 (158)
T ss_pred hhhHHHHHHHHHhhhhhhceeeeccceEEEeecCchhhheeeeeeeeecccccccccccCCCcccccCCcEEeeeecCcc
Confidence 3566666665544444444443344445556665311 000 123333 23556888999998876553
Q ss_pred --CCceEEecccccCC-----CC----CC--CCCc-ccccCCC---eEEEcCCccceEEEcCCCCCcCCCCeEEEEecC
Q 030047 70 --QESIAELQSKEEYE-----SC----NV--SNPI-RMYTDGL---DVIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLP 131 (183)
Q Consensus 70 --~h~V~ev~~k~~Y~-----~C----~~--s~~~-~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 131 (183)
.|... + .+++.. .= |. .++. .....|. -.+.++++|.|=|+|.++||-+.||.-.|+|.+
T Consensus 82 el~hef~-~-~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 82 ELKHEFT-M-DAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cceEEEe-c-cCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeCC
Confidence 35444 2 111111 00 00 1111 1233343 367788899999999999999999999999863
No 14
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.70 E-value=0.024 Score=41.70 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCCeEEeCC--EEEEEEcC-CCCceEEecccccCCCCCCCCCcccccCCCe-EEEc--CCccceEEEcCCCCCcCCCCeE
Q 030047 52 AGRVFRAGD--KILLAYSP-AQESIAELQSKEEYESCNVSNPIRMYTDGLD-VIPL--DGEGIHYFVSSKYDNCKNGLKL 125 (183)
Q Consensus 52 ~~~~F~vGD--~LvF~y~~-~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~-~v~L--~~~G~~YFic~v~~HC~~GmKl 125 (183)
+..+.+.|+ +|+|+... ..|++. + .+ .+-......|.+ ++++ +++|.|=|.|+...+ ||-
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~-i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G 100 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFV-I-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKG 100 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEE-E-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEE-E-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence 457899999 55555442 456665 3 21 111123444543 4555 889999999997553 665
Q ss_pred EEEe
Q 030047 126 HVNV 129 (183)
Q Consensus 126 ~I~V 129 (183)
.|.|
T Consensus 101 ~liV 104 (104)
T PF13473_consen 101 TLIV 104 (104)
T ss_dssp ----
T ss_pred cccC
Confidence 5544
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.40 E-value=0.21 Score=41.65 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.9
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEecCC
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 132 (183)
.++|.||++|+++||-+.||=..+.|.+.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 36999999999999999999888888765
No 16
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=94.05 E-value=0.033 Score=44.48 Aligned_cols=75 Identities=24% Similarity=0.425 Sum_probs=44.2
Q ss_pred eEEeCCEEEEEEcC---C--------CCceEEecccccCCCCCCC-CCccccc-------CCCeEEEcC-----------
Q 030047 55 VFRAGDKILLAYSP---A--------QESIAELQSKEEYESCNVS-NPIRMYT-------DGLDVIPLD----------- 104 (183)
Q Consensus 55 ~F~vGD~LvF~y~~---~--------~h~V~ev~~k~~Y~~C~~s-~~~~~~~-------~G~~~v~L~----------- 104 (183)
..++||.|-+-=.. . ...+.+| ++++|++|+.. ++...+. .|+.++++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMV-SEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE--HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEE-cHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 56789999986443 2 2346655 99999999963 3333331 234443320
Q ss_pred --Ccc-ceEEEcCC-----------CCCcCC-CCeEEEEec
Q 030047 105 --GEG-IHYFVSSK-----------YDNCKN-GLKLHVNVL 130 (183)
Q Consensus 105 --~~G-~~YFic~v-----------~~HC~~-GmKl~I~V~ 130 (183)
++| .||||++= +|-|.. .|||.+.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 266 58888871 233876 799999885
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=92.97 E-value=0.38 Score=38.11 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCCCeEEeCCEEEEEEcCC---CCceEEecccccCCCCCCCCCcccccCCCe---EEEcCCccceEEEcCCCCCcC
Q 030047 51 SAGRVFRAGDKILLAYSPA---QESIAELQSKEEYESCNVSNPIRMYTDGLD---VIPLDGEGIHYFVSSKYDNCK 120 (183)
Q Consensus 51 a~~~~F~vGD~LvF~y~~~---~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFic~v~~HC~ 120 (183)
.+..+.+.||.+.+.+.+. .|++. . .+|+ .+ .....|.+ +++.+++|.|.|.|+. ||.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~-i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFS-I---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceE-E---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 4556889999998877542 35555 2 2232 11 22333443 5777999999999987 664
No 18
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.88 E-value=1.8 Score=38.25 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=49.6
Q ss_pred CeEEeCCEEEEEEcCC-----CCceEEecccccCCCCCCCCCcccccCCCe---EEEcCCccceEEEcCC----CCCcCC
Q 030047 54 RVFRAGDKILLAYSPA-----QESIAELQSKEEYESCNVSNPIRMYTDGLD---VIPLDGEGIHYFVSSK----YDNCKN 121 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~-----~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFic~v----~~HC~~ 121 (183)
.+++.||+++.++.+. .|++. +--.... +..........|.+ .|+++.+|+|||-|.. ..|=..
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h-~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVD-FHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeee-ecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 5788999999888764 46665 2111100 10111222344543 6788999999999995 457788
Q ss_pred CCeEEEEecCCC
Q 030047 122 GLKLHVNVLPQP 133 (183)
Q Consensus 122 GmKl~I~V~~~~ 133 (183)
||.-.+.|.+..
T Consensus 137 Gl~G~liV~~~~ 148 (311)
T TIGR02376 137 GMNGAIMVLPRE 148 (311)
T ss_pred CcceEEEeeccC
Confidence 999999998653
No 19
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=86.89 E-value=4.8 Score=31.56 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=21.3
Q ss_pred eEEEcC----Cccc-eEEEcCCCCCcCCCCeEEEE
Q 030047 99 DVIPLD----GEGI-HYFVSSKYDNCKNGLKLHVN 128 (183)
Q Consensus 99 ~~v~L~----~~G~-~YFic~v~~HC~~GmKl~I~ 128 (183)
+.|+++ ++|. |=|+|++|||=. .||-.++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 455554 4676 669999999986 6887654
No 20
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=83.83 E-value=9.6 Score=34.98 Aligned_cols=71 Identities=14% Similarity=-0.004 Sum_probs=36.7
Q ss_pred CCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCC---CeEEEcCCccceEEEcCCCCCcCCCCeEEEE
Q 030047 52 AGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDG---LDVIPLDGEGIHYFVSSKYDNCKNGLKLHVN 128 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G---~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~ 128 (183)
+..++..|+ ++|.-.+..-.+.|. +.|+.=-.-........| .-.++| ++|+|-|+|+. | ..||-.|+
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Ef---e~~~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C~~--~--~~~~g~l~ 114 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEW---EILKGVMVVEERENIAPGFSQKMTANL-QPGEYDMTCGL--L--TNPKGKLI 114 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceE---EeeccccccccccccCCCCceEEEEec-CCceEEeecCc--C--CCCCceEE
Confidence 456899997 555543322233332 112100000001122233 335667 59999999976 5 33577788
Q ss_pred ecC
Q 030047 129 VLP 131 (183)
Q Consensus 129 V~~ 131 (183)
|..
T Consensus 115 Vtg 117 (375)
T PRK10378 115 VKG 117 (375)
T ss_pred EeC
Confidence 864
No 21
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.68 E-value=3.8 Score=40.00 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCeEEeCCEEEEEEcCC------CCceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCCCCcCC--
Q 030047 53 GRVFRAGDKILLAYSPA------QESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYDNCKN-- 121 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~------~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~-- 121 (183)
..++++||.+.|...+- .|+.. + ..|+ .......|. -.++.++||.|||+|+. .|-.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~-I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H 623 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFA-I---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALH 623 (635)
T ss_pred eEEecCCCEEEEEEEeCCccccccccee-e---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCc
Confidence 46789999999999772 34444 2 1121 111222343 25778999999999996 4554
Q ss_pred -CCeEEEEecC
Q 030047 122 -GLKLHVNVLP 131 (183)
Q Consensus 122 -GmKl~I~V~~ 131 (183)
+|+-.|.|.+
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 6888888874
No 22
>PLN02354 copper ion binding / oxidoreductase
Probab=80.68 E-value=16 Score=34.92 Aligned_cols=79 Identities=13% Similarity=-0.005 Sum_probs=49.6
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCCCC-CCCCCcccccCCCeEEEc-CCccceEEEcCCCCCcCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYESC-NVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~C-~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 123 (183)
.+++.||+|+.+..+.- |.+.|- .....|.= ...-||.--.+=.-.|++ +.+|++||=+-...+-..|+
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~-~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl 138 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQR-KNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG 138 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCC-CCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence 47889999998876542 566642 22223320 000122221111236777 57999999998888888899
Q ss_pred eEEEEecCCC
Q 030047 124 KLHVNVLPQP 133 (183)
Q Consensus 124 Kl~I~V~~~~ 133 (183)
.-.|.|....
T Consensus 139 ~G~lII~~~~ 148 (552)
T PLN02354 139 FGGLRVNSRL 148 (552)
T ss_pred cceEEEcCCc
Confidence 9999998653
No 23
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=80.59 E-value=2.2 Score=32.36 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=45.9
Q ss_pred CeEEeCCEEEEEEcCC---CCceEE----ecccccCCCCCCCCCcccccCCC---eEEEcCC-ccceEEEcCCCCCcCCC
Q 030047 54 RVFRAGDKILLAYSPA---QESIAE----LQSKEEYESCNVSNPIRMYTDGL---DVIPLDG-EGIHYFVSSKYDNCKNG 122 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~---~h~V~e----v~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~-~G~~YFic~v~~HC~~G 122 (183)
.+.+.||+|..++.+. .+++.- +......|. ....+......|. -.++++. +|++||-|...+|=..|
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG-~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDG-VPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSG-GTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCC-cccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 5788999999999753 233320 111101111 0000111122233 3688888 99999999988854489
Q ss_pred CeEEEEecCC
Q 030047 123 LKLHVNVLPQ 132 (183)
Q Consensus 123 mKl~I~V~~~ 132 (183)
|--.+.|.+.
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9988888754
No 24
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=79.63 E-value=22 Score=34.56 Aligned_cols=75 Identities=9% Similarity=0.046 Sum_probs=50.3
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCC-----CCCCCCCcccccCCCeEEEc-CCccceEEEcCCCCCc
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYE-----SCNVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNC 119 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~-----~C~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC 119 (183)
.+++.||+|+.+..+.. |.+.|. .....| .| ||.--.+=.-+|++ +.+|++||=+....+-
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~-~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~ 136 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQR-KSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHR 136 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCC-CCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhh
Confidence 47889999998876532 666643 222222 34 22222222246788 5899999999988888
Q ss_pred CCCCeEEEEecCCC
Q 030047 120 KNGLKLHVNVLPQP 133 (183)
Q Consensus 120 ~~GmKl~I~V~~~~ 133 (183)
..|+.-.|.|....
T Consensus 137 ~~Gl~GalII~~~~ 150 (596)
T PLN00044 137 AAGGYGAITINNRD 150 (596)
T ss_pred hCcCeeEEEEcCcc
Confidence 88999999998754
No 25
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=76.92 E-value=4 Score=31.12 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=41.2
Q ss_pred CCCeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCCccc-ccCCC---eEEEcCCccceEEEcCCCCCcCCC---
Q 030047 52 AGRVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNPIRM-YTDGL---DVIPLDGEGIHYFVSSKYDNCKNG--- 122 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~~~~-~~~G~---~~v~L~~~G~~YFic~v~~HC~~G--- 122 (183)
+......|+.+.|.-.+. .|+-. +.. + .++. --.|. -.++.+++|.|++.|+. .|-.|
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~-ip~---~-------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~ 112 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFW-IPE---L-------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSF 112 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEE-ETT---C-------TEEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG
T ss_pred ceecccccceEeEEEEcCCcccccc-ccc---c-------CcccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCC
Confidence 334677899999888753 46666 421 1 1111 12343 35778999999999986 89887
Q ss_pred CeEEEEe
Q 030047 123 LKLHVNV 129 (183)
Q Consensus 123 mKl~I~V 129 (183)
|+..|.|
T Consensus 113 M~~~v~V 119 (120)
T PF00116_consen 113 MPGKVIV 119 (120)
T ss_dssp -EEEEEE
T ss_pred CeEEEEE
Confidence 8887776
No 26
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=74.11 E-value=2.9 Score=31.91 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=20.7
Q ss_pred CeEEeCCEEEEEEc-CCCCceEEecccccCCC
Q 030047 54 RVFRAGDKILLAYS-PAQESIAELQSKEEYES 84 (183)
Q Consensus 54 ~~F~vGD~LvF~y~-~~~h~V~ev~~k~~Y~~ 84 (183)
+.|++||.|+|+=- .++-=+++|..-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 58999999999553 33333555655566765
No 27
>PLN02604 oxidoreductase
Probab=72.94 E-value=22 Score=33.99 Aligned_cols=80 Identities=11% Similarity=0.095 Sum_probs=49.9
Q ss_pred CCCeEEeCCEEEEEEcCCC---------CceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCCCCc
Q 030047 52 AGRVFRAGDKILLAYSPAQ---------ESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYDNC 119 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~---------h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~HC 119 (183)
...+++.||+++++..+.. |.+.+. ....+|. ...-.......|. -.|+++.+|++||=|-...|-
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~-~~~~~DG-~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~ 132 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQI-GTPWFDG-TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQR 132 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCC-CCccccC-CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHH
Confidence 3468999999999887642 233211 1111111 0000000122343 367889999999999999999
Q ss_pred CCCCeEEEEecCCC
Q 030047 120 KNGLKLHVNVLPQP 133 (183)
Q Consensus 120 ~~GmKl~I~V~~~~ 133 (183)
..||.-.|.|....
T Consensus 133 ~~Gl~G~liV~~~~ 146 (566)
T PLN02604 133 EAGLYGSIRVSLPR 146 (566)
T ss_pred hCCCeEEEEEEecC
Confidence 99999999998653
No 28
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=72.14 E-value=28 Score=33.62 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCeEEeCCEEEEEEcCCC--------CceEEecccccCCC-CCCC-CCcccccCCCeEEEcCCccceEEEcCCCCCcCCC
Q 030047 53 GRVFRAGDKILLAYSPAQ--------ESIAELQSKEEYES-CNVS-NPIRMYTDGLDVIPLDGEGIHYFVSSKYDNCKNG 122 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~-C~~s-~~~~~~~~G~~~v~L~~~G~~YFic~v~~HC~~G 122 (183)
..+++.||.++.++.+.- |.+. +.+ ..|. ...+ .+|.-..+-...|++..+|+|||=|-...+=+.|
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~-~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~G 153 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGIL-LPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAG 153 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCc-CCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhcc
Confidence 358899999999887642 3333 211 1111 1111 1121111112468889999999999877777779
Q ss_pred CeEEEEecCC
Q 030047 123 LKLHVNVLPQ 132 (183)
Q Consensus 123 mKl~I~V~~~ 132 (183)
+--.|.|.+.
T Consensus 154 L~G~lIV~~~ 163 (587)
T TIGR01480 154 LYGPLIIDPA 163 (587)
T ss_pred ceEEEEECCC
Confidence 9988888754
No 29
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=71.45 E-value=7.4 Score=32.05 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=25.2
Q ss_pred EEEcCCccceEEEcCCCCCcCC---CCeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKN---GLKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 132 (183)
.++.+++|.|++.|+. .|-. .|++.|.|.++
T Consensus 160 ~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 160 WFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVER 193 (201)
T ss_pred EEEeCCCEEEEEEehh--hCCcCccCCeEEEEEECH
Confidence 5678999999999997 5554 59999998853
No 30
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=70.86 E-value=12 Score=32.32 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=55.5
Q ss_pred EEecCCCCCCCC-CCCcccCCC-CeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCCcccc-cCCC---eEEEcC
Q 030047 33 HVVGGDRGWDSS-SDVASWSAG-RVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNPIRMY-TDGL---DVIPLD 104 (183)
Q Consensus 33 ~~VGg~~GW~~~-~~Y~~Wa~~-~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~~~~~-~~G~---~~v~L~ 104 (183)
.++|-.-.|.+. ++|.-+..+ ..+.+|..+.|+-++. .|+-. +++ -. .+.+ -.|. -.++.+
T Consensus 116 ~v~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~-IP~-l~---------~k~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 116 EVTAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFW-IPQ-LG---------GKIDAIPGMTTELWLTAN 184 (247)
T ss_pred EEEEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEE-ecC-CC---------ceeeecCCceEEEEEecC
Confidence 344444456542 344555554 4888999999998874 24433 311 11 1111 1222 357889
Q ss_pred CccceEEEcCCCCCcCCC---CeEEEEecCCC
Q 030047 105 GEGIHYFVSSKYDNCKNG---LKLHVNVLPQP 133 (183)
Q Consensus 105 ~~G~~YFic~v~~HC~~G---mKl~I~V~~~~ 133 (183)
++|.|+.+|.. .|-.| |++.|.|.+..
T Consensus 185 ~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 185 KPGTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCeEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 99999999985 88875 99999999764
No 31
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=69.04 E-value=3 Score=25.54 Aligned_cols=18 Identities=28% Similarity=0.824 Sum_probs=10.9
Q ss_pred CcccCCCCeEEeCCEEEE
Q 030047 47 VASWSAGRVFRAGDKILL 64 (183)
Q Consensus 47 Y~~Wa~~~~F~vGD~LvF 64 (183)
|..|..+++...||.+.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 568999999999999975
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=68.11 E-value=17 Score=34.49 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=49.6
Q ss_pred CCeEEeCCEEEEEEcCCC---------CceEEeccccc-CCC-CC-CCCCcccccCCC---eEEEcCCccceEEEcCCCC
Q 030047 53 GRVFRAGDKILLAYSPAQ---------ESIAELQSKEE-YES-CN-VSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYD 117 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~~---------h~V~ev~~k~~-Y~~-C~-~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~ 117 (183)
..+++.||.|+++..+.. |.+.+. ... .|. -. ..-++ ..|. ..|+++.+|++||=|-...
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~--~~~~~DG~~~vtq~~I---~PG~s~~y~f~~~~~Gt~wyH~H~~~ 107 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQI--GTPWADGTAGVTQCAI---NPGETFIYNFVVDRPGTYFYHGHYGM 107 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCc--CCcccCCCCccccCCc---CCCCEEEEEEEcCCCEEEEEEecchH
Confidence 358899999999887642 233221 111 111 00 00112 2333 3688899999999999999
Q ss_pred CcCCCCeEEEEecCCC
Q 030047 118 NCKNGLKLHVNVLPQP 133 (183)
Q Consensus 118 HC~~GmKl~I~V~~~~ 133 (183)
|-..||.-.|.|....
T Consensus 108 q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 108 QRSAGLYGSLIVDVPD 123 (541)
T ss_pred HhhccceEEEEEecCC
Confidence 9999999999998653
No 33
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=66.35 E-value=8.3 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecCCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLPQP 133 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~~ 133 (183)
.++.+++|.|+..|+. .|-.| |++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4567899999999985 88875 99999998653
No 34
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=64.25 E-value=27 Score=27.99 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=16.3
Q ss_pred CeEEeCCEEEEEEcCC-C---CceEEe
Q 030047 54 RVFRAGDKILLAYSPA-Q---ESIAEL 76 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~-~---h~V~ev 76 (183)
..++.||.++|+.+.+ . |.|.++
T Consensus 59 ~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 59 NDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred CCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 5788999999998764 2 555544
No 35
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.81 E-value=7.4 Score=28.88 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=6.4
Q ss_pred CchhhHHHHHHH
Q 030047 1 MVGVRMVKALVM 12 (183)
Q Consensus 1 m~~~~~~~~~~~ 12 (183)
||++..|.+.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 887554444333
No 36
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=60.12 E-value=5.4 Score=28.38 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.4
Q ss_pred CCCeEEeCCEEEEE
Q 030047 52 AGRVFRAGDKILLA 65 (183)
Q Consensus 52 ~~~~F~vGD~LvF~ 65 (183)
+++.|+|||.|.++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 45789999999763
No 37
>PLN02191 L-ascorbate oxidase
Probab=57.69 E-value=44 Score=32.14 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=48.6
Q ss_pred CeEEeCCEEEEEEcCCC---------CceEEecccccCCCC-CCC-CCcccccCCCeEEEcCCccceEEEcCCCCCcCCC
Q 030047 54 RVFRAGDKILLAYSPAQ---------ESIAELQSKEEYESC-NVS-NPIRMYTDGLDVIPLDGEGIHYFVSSKYDNCKNG 122 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~---------h~V~ev~~k~~Y~~C-~~s-~~~~~~~~G~~~v~L~~~G~~YFic~v~~HC~~G 122 (183)
.+++.||+|+.+..+.. |.+.+ .....+|.= ..+ -||.-..+=.-.|+++.+|++||=|-...+-..|
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~-~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQ-KGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCC-CCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 58899999988886531 44442 121112210 000 1221111112368889999999999998888999
Q ss_pred CeEEEEecCC
Q 030047 123 LKLHVNVLPQ 132 (183)
Q Consensus 123 mKl~I~V~~~ 132 (183)
|--.|.|...
T Consensus 135 l~G~liV~~~ 144 (574)
T PLN02191 135 LYGSLIVDVA 144 (574)
T ss_pred CEEEEEEccC
Confidence 9999999753
No 38
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=49.73 E-value=27 Score=27.14 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.8
Q ss_pred CeEEeCCEEEEEEcCCCC
Q 030047 54 RVFRAGDKILLAYSPAQE 71 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~h 71 (183)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 489999999999998665
No 39
>PLN02835 oxidoreductase
Probab=48.61 E-value=2.5e+02 Score=26.83 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=49.1
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCCCC-CCCCCcccccCCCeEEEc-CCccceEEEcCCCCCcCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYESC-NVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~C-~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 123 (183)
.+++.||+|+.+..+.- |.+.+. .....|.= ...-||.-..+=...|++ +.+|+|||=|-...+-..|+
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~-~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQR-KNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccC-CCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 58899999998887642 556632 22223320 011123222222236766 57999999998888888899
Q ss_pred eEEEEecCC
Q 030047 124 KLHVNVLPQ 132 (183)
Q Consensus 124 Kl~I~V~~~ 132 (183)
.-.+.|...
T Consensus 141 ~G~lIV~~~ 149 (539)
T PLN02835 141 FGAINVYER 149 (539)
T ss_pred cceeEEeCC
Confidence 999888643
No 40
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.28 E-value=59 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=17.5
Q ss_pred eEEeCCEEEEEEcCC----CCceEEe
Q 030047 55 VFRAGDKILLAYSPA----QESIAEL 76 (183)
Q Consensus 55 ~F~vGD~LvF~y~~~----~h~V~ev 76 (183)
.+++||.++|+.+.. .|.|.++
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 589999999999853 3777755
No 41
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=45.13 E-value=18 Score=29.47 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=13.1
Q ss_pred CCeEEeCCEEEEEEcC
Q 030047 53 GRVFRAGDKILLAYSP 68 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~ 68 (183)
.++.+.||.++|+-..
T Consensus 48 ~~~~~rGDiVvf~~P~ 63 (176)
T PRK13838 48 DRPVAVGDLVFICPPE 63 (176)
T ss_pred CCCCCCCcEEEEECCc
Confidence 4689999999998653
No 42
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.93 E-value=29 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=25.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 132 (183)
.++.+++|.||..|+. .|-.| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 4567899999999986 88876 8999888753
No 43
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=44.19 E-value=66 Score=31.17 Aligned_cols=85 Identities=13% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCCCC-CCcccCCCCeEEeCCEEEEEEcCCC--------Cce-EEeccccc-CCCCCCCCCcccccCCC---eEEEcCCc
Q 030047 41 WDSSS-DVASWSAGRVFRAGDKILLAYSPAQ--------ESI-AELQSKEE-YESCNVSNPIRMYTDGL---DVIPLDGE 106 (183)
Q Consensus 41 W~~~~-~Y~~Wa~~~~F~vGD~LvF~y~~~~--------h~V-~ev~~k~~-Y~~C~~s~~~~~~~~G~---~~v~L~~~ 106 (183)
|+++- .|.. ....+++.||.+.+.+.+.. |.. .++.+... |.. ..+.+ ....|. -.|..+.+
T Consensus 488 wtiNG~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv-~V~Pg~t~~~~f~ad~p 563 (587)
T TIGR01480 488 WSFDGEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTV-DVPPGGKRSFRVTADAL 563 (587)
T ss_pred EEECCccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCce-eeCCCCEEEEEEECCCC
Confidence 88753 2222 23568999999999998743 332 23322111 110 00111 122333 25778999
Q ss_pred cceEEEcCCCCCcCCCCeEEEEe
Q 030047 107 GIHYFVSSKYDNCKNGLKLHVNV 129 (183)
Q Consensus 107 G~~YFic~v~~HC~~GmKl~I~V 129 (183)
|.++|=|-+..|=+.||--.+.|
T Consensus 564 G~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 564 GRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred eEEEEcCCCHHHHhCcCcEEEEe
Confidence 99999999999999999887776
No 44
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=40.65 E-value=72 Score=31.03 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=32.1
Q ss_pred ccCCCe--EEEcCCccceEEEcCCCCCcCCCCeEEEEecCCCC
Q 030047 94 YTDGLD--VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 94 ~~~G~~--~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 134 (183)
...|-. +|..|.||..+|=|-...|=..||.+.+.|.+...
T Consensus 496 p~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~ 538 (596)
T PLN00044 496 FPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPED 538 (596)
T ss_pred CCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCC
Confidence 344544 57789999999989877887779999999886653
No 45
>PLN02168 copper ion binding / pectinesterase
Probab=40.51 E-value=1.3e+02 Score=28.79 Aligned_cols=79 Identities=13% Similarity=-0.010 Sum_probs=50.1
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCCC-CCCCCCcccccCCCeEEEc-CCccceEEEcCCCCCcCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYES-CNVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~-C~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 123 (183)
.+++.||+|+.+..+.- |.+.+. .....|. -...-||.-..+=.-.|++ +.+|++||=|-...+=..|+
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~-~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLR-KNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCC-CCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 58999999999987642 666632 2222232 0111133222222247888 47999999997776667799
Q ss_pred eEEEEecCCC
Q 030047 124 KLHVNVLPQP 133 (183)
Q Consensus 124 Kl~I~V~~~~ 133 (183)
.-.+.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999998654
No 46
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=39.75 E-value=30 Score=24.29 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=11.9
Q ss_pred CCCeEEeCCEEEEEEcCCC
Q 030047 52 AGRVFRAGDKILLAYSPAQ 70 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~ 70 (183)
..+..++||.++|.+....
T Consensus 70 ~~n~L~~GD~~~F~~~~~~ 88 (100)
T PF02362_consen 70 RDNGLKEGDVCVFELIGNS 88 (100)
T ss_dssp HHCT--TT-EEEEEE-SSS
T ss_pred HHcCCCCCCEEEEEEecCC
Confidence 4578899999999998643
No 47
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.02 E-value=39 Score=28.63 Aligned_cols=30 Identities=10% Similarity=0.303 Sum_probs=24.5
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.++.+++|.||..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 4678999999999985 77765 888888775
No 48
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=39.00 E-value=43 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.4
Q ss_pred EEEcCCccceEEEcCCCCCcCC---CCeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKN---GLKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~ 131 (183)
.+..+++|.+|..|+. .|-. .|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3567889999999985 6765 4888888765
No 49
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.83 E-value=44 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.0
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 132 (183)
.+..+++|.+|..|+. -|-.| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 4678899999999985 78775 8888887753
No 50
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.41 E-value=45 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=24.8
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.++.+++|.||..|+. -|-.| |++.|+|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 4678999999999985 88775 888888875
No 51
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.00 E-value=42 Score=28.45 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=23.9
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.||..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4567899999999986 77664 888888775
No 52
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.93 E-value=1.9e+02 Score=27.99 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCC-CCCC-CC-CcccccCCC---eEEEcC-CccceEEEcCCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYE-SCNV-SN-PIRMYTDGL---DVIPLD-GEGIHYFVSSKYDN 118 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~-~C~~-s~-~~~~~~~G~---~~v~L~-~~G~~YFic~v~~H 118 (183)
.....||+|+.+..+.. |.|.|. |..|. . .. ++ || ..|. -.++++ +.|++|+-+...-|
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~--kn~w~DG-~~~TqCPI---~Pg~~~tY~F~v~~q~GT~~yh~h~~~~ 134 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQR--KNPWQDG-VYITQCPI---QPGENFTYRFTVKDQIGTLWYHSHVSWQ 134 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEecccccc--CCccccC-CccccCCc---CCCCeEEEEEEeCCcceeEEEeeccccc
Confidence 47789999988776432 667763 34442 2 10 00 22 2232 368887 89999999999999
Q ss_pred cCCCCeEEEEecCCCCCC
Q 030047 119 CKNGLKLHVNVLPQPHQS 136 (183)
Q Consensus 119 C~~GmKl~I~V~~~~~~~ 136 (183)
-..|+.-++.|.+....+
T Consensus 135 Ra~G~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 135 RATGVFGALIINPRPGLP 152 (563)
T ss_pred cccCceeEEEEcCCccCC
Confidence 999999999999875433
No 53
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.59 E-value=49 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=24.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.||-.|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 4568999999999986 77765 888888775
No 54
>PLN02792 oxidoreductase
Probab=35.55 E-value=1.6e+02 Score=28.20 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=47.5
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCCCC-CCCCCcccccCCCeEEEc-CCccceEEEcCCCCCcCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYESC-NVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~C-~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 123 (183)
.+++.||+|+.+..+.- |.+.|. .....|.= -..-||.-..+=.-.|++ +.+|++||=|-...+-..|+
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~-~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMR-KNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccC-CCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccc
Confidence 48899999998887642 566642 22112220 000123222222246787 57999999998877777788
Q ss_pred eEEEEecCC
Q 030047 124 KLHVNVLPQ 132 (183)
Q Consensus 124 Kl~I~V~~~ 132 (183)
.-.+.|...
T Consensus 128 ~G~liI~~~ 136 (536)
T PLN02792 128 YGSLRIYSL 136 (536)
T ss_pred ccceEEeCC
Confidence 777776653
No 55
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.35 E-value=50 Score=28.00 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=24.0
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 4678999999999986 77765 888887764
No 56
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=34.82 E-value=31 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.634 Sum_probs=14.2
Q ss_pred eEEeCCEEEEEEcCCCC
Q 030047 55 VFRAGDKILLAYSPAQE 71 (183)
Q Consensus 55 ~F~vGD~LvF~y~~~~h 71 (183)
+|++||.|.|.+..+++
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 68999999999987554
No 57
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.42 E-value=55 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=24.6
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.+|..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4667999999999985 77775 888888875
No 58
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.02 E-value=30 Score=25.66 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 030047 8 KALVMIMAVALSLGL 22 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (183)
|.+++++++++++++
T Consensus 4 K~~llL~l~LA~lLl 18 (95)
T PF07172_consen 4 KAFLLLGLLLAALLL 18 (95)
T ss_pred hHHHHHHHHHHHHHH
Confidence 555555444433333
No 59
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=33.10 E-value=1.7e+02 Score=27.68 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred eEEeCCEEEEEEcCCC--------CceEEecccccCCC--CCCCCCcccccCCCeEEEc-CCccceEEEcCCCCCcCCCC
Q 030047 55 VFRAGDKILLAYSPAQ--------ESIAELQSKEEYES--CNVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 55 ~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~--C~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 123 (183)
+++.||+|+.+..+.. |.+.|. .....|. .-..-||.-..+=.-.|++ +.+|++||=|-. .+...||
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~-~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl 114 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQL-RNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATV 114 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCC-CCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccc
Q ss_pred eEEEEecCCCCCCCC
Q 030047 124 KLHVNVLPQPHQSSE 138 (183)
Q Consensus 124 Kl~I~V~~~~~~~~p 138 (183)
.-.|.|......+.|
T Consensus 115 ~G~lIV~~~~~~~~~ 129 (539)
T TIGR03389 115 YGAIVILPKPGVPYP 129 (539)
T ss_pred eEEEEEcCCCCCCCC
No 60
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=32.81 E-value=52 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.0
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.++.+++|.|+-.|.. .|-.| |++.|.|.+
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 5778999999999985 78775 899988875
No 61
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=31.74 E-value=33 Score=20.77 Aligned_cols=18 Identities=39% Similarity=0.852 Sum_probs=14.2
Q ss_pred CcccCCCCeEEeCCEEEE
Q 030047 47 VASWSAGRVFRAGDKILL 64 (183)
Q Consensus 47 Y~~Wa~~~~F~vGD~LvF 64 (183)
|..|..++....||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 467888888888998865
No 62
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=31.05 E-value=57 Score=24.23 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.3
Q ss_pred ceEEEecC
Q 030047 30 QVHHVVGG 37 (183)
Q Consensus 30 a~~~~VGg 37 (183)
+.++.-||
T Consensus 27 ~~~~~~Gg 34 (92)
T TIGR01653 27 AAQSTQGG 34 (92)
T ss_pred ceEEecCc
Confidence 55565554
No 63
>PLN02991 oxidoreductase
Probab=30.63 E-value=2.2e+02 Score=27.28 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred eEEeCCEEEEEEcCCC--------CceEEecccccCCC--CCCCCCcccccCCCeEEEc-CCccceEEEcCCCCCcCCCC
Q 030047 55 VFRAGDKILLAYSPAQ--------ESIAELQSKEEYES--CNVSNPIRMYTDGLDVIPL-DGEGIHYFVSSKYDNCKNGL 123 (183)
Q Consensus 55 ~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~--C~~s~~~~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 123 (183)
+++.||+|+.+..+.- |.+.|. .....|. = ..-||.-..+=...|++ +.+|++||=+-...+-..|+
T Consensus 62 ~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~-~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 62 ISVTNDNLIINVFNHLDEPFLISWSGIRNW-RNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred EEECCCEEEEEecCCCCCCccEEECCcccC-CCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Q ss_pred eEEEEecCCCCCCCC
Q 030047 124 KLHVNVLPQPHQSSE 138 (183)
Q Consensus 124 Kl~I~V~~~~~~~~p 138 (183)
.-.+.|......+.|
T Consensus 140 ~G~lIV~~~~~~~~p 154 (543)
T PLN02991 140 FGAIRISSRPLIPVP 154 (543)
T ss_pred eeeEEEeCCcccCcc
No 64
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=30.45 E-value=66 Score=27.48 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=25.0
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 132 (183)
.+..+++|.+|..|+. .|-.| |++.|+|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 4678999999999985 78776 8888887753
No 65
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=30.17 E-value=52 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=25.8
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 132 (183)
.++-+++|.||-.|+. .|-.| |++.|.|.++
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 5778999999999985 88875 9999998753
No 66
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=29.30 E-value=32 Score=29.74 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.5
Q ss_pred eEEEcCCccceEEEcCCCCCcCCC
Q 030047 99 DVIPLDGEGIHYFVSSKYDNCKNG 122 (183)
Q Consensus 99 ~~v~L~~~G~~YFic~v~~HC~~G 122 (183)
|.|.++..|-+-|+|+.-+||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 578899999999999999999864
No 67
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=29.13 E-value=1.1e+02 Score=29.74 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=44.0
Q ss_pred CCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCC----Ccccc-cCCCe-EEEcCCccceEEEc
Q 030047 51 SAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSN----PIRMY-TDGLD-VIPLDGEGIHYFVS 113 (183)
Q Consensus 51 a~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~----~~~~~-~~G~~-~v~L~~~G~~YFic 113 (183)
-+.|+|.--|.+.|+|+.....++ |....+.|.-+.+- .+..+ .+|.+ .|+|.+.|+-|=+|
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LL-vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALL-VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhccccccceeEEEeccCCceEE-EEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 467899999999999998666777 44778888766552 11111 34654 79999999976444
No 68
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.67 E-value=70 Score=27.08 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=24.2
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.+|..|+. .|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 4667999999999985 77664 888888775
No 69
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.16 E-value=97 Score=30.00 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=36.7
Q ss_pred cccCCCe--EEEcCCccceEEEcCCCCCcCCCCeEEEEecCCCCCCC
Q 030047 93 MYTDGLD--VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQPHQSS 137 (183)
Q Consensus 93 ~~~~G~~--~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~~ 137 (183)
++-.|-. .|.+|.||...|=|-+..|=..||++...|.+...+..
T Consensus 497 V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~ 543 (563)
T KOG1263|consen 497 VPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLS 543 (563)
T ss_pred eCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCC
Confidence 3444544 56789999999999999999999999999998866544
No 70
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.20 E-value=76 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=24.1
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.+|..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 4667899999999986 77664 888888775
No 71
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.19 E-value=70 Score=27.22 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=24.3
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.||..|+. -|-.| |.+.|.|.+
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 4678999999999985 77765 888888775
No 72
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=25.02 E-value=5.8e+02 Score=23.98 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccceEEEecCCCCC
Q 030047 5 RMVKALVMIMAVALSLGLGGQWAAAQVHHVVGGDRGW 41 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~VGg~~GW 41 (183)
++.+.++++++++..+ .....+.-.+.+.||+..|=
T Consensus 3 ~~~~~~~~l~l~~~~~-~~~~~~~~~~~~~vg~~~~~ 38 (421)
T PRK09723 3 KFFRYFLFLALCLSCY-TASAGTDDNVSYIVGNYYGV 38 (421)
T ss_pred hHHHHHHHHHHHHhhh-hhhccccCceEEEEcccccc
Confidence 4445555533222222 22222345789999997653
No 73
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=24.80 E-value=1.7e+02 Score=23.31 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=26.1
Q ss_pred CeEEeCCEEEEEEc-----CCCCceEEecccccCCCCCCCC
Q 030047 54 RVFRAGDKILLAYS-----PAQESIAELQSKEEYESCNVSN 89 (183)
Q Consensus 54 ~~F~vGD~LvF~y~-----~~~h~V~ev~~k~~Y~~C~~s~ 89 (183)
...+.||.+++.-. ..-|..+-+ ++...-.|+-..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~-~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFM-DNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEe-CCCcEEEecCCC
Confidence 46899999998665 235888844 888888898743
No 74
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=24.20 E-value=87 Score=22.22 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=30.6
Q ss_pred cceEEEecCCC---CCCCC-----------CCCcccCCCCeEEeCCEEEEEEc
Q 030047 29 AQVHHVVGGDR---GWDSS-----------SDVASWSAGRVFRAGDKILLAYS 67 (183)
Q Consensus 29 ~a~~~~VGg~~---GW~~~-----------~~Y~~Wa~~~~F~vGD~LvF~y~ 67 (183)
...-++||+.. .|++. .+|..|.....+..|..+.|+|-
T Consensus 15 ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 15 GESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp TEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred CCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 34678999963 49962 15789999888999999999994
No 75
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.82 E-value=82 Score=21.85 Aligned_cols=15 Identities=13% Similarity=0.291 Sum_probs=9.2
Q ss_pred ccceEEEecCCCCCC
Q 030047 28 AAQVHHVVGGDRGWD 42 (183)
Q Consensus 28 a~a~~~~VGg~~GW~ 42 (183)
.+|-+|.-|+..-.+
T Consensus 20 Q~APQYa~GeeP~YD 34 (65)
T PF10731_consen 20 QSAPQYAPGEEPSYD 34 (65)
T ss_pred hcCcccCCCCCCCcC
Confidence 345688888764433
No 76
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.55 E-value=1.1e+02 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.7
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 132 (183)
.+..+++|.+|-.|+. .|-.| |.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 4678999999999985 77764 8998888753
No 77
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=23.50 E-value=1e+02 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=10.8
Q ss_pred cccccceEE---EecCCCCCCCCCCCcccC
Q 030047 25 QWAAAQVHH---VVGGDRGWDSSSDVASWS 51 (183)
Q Consensus 25 ~~~a~a~~~---~VGg~~GW~~~~~Y~~Wa 51 (183)
...+.+.+| +.|+..|+.-.=.|..|.
T Consensus 22 ~~pA~A~dyp~Clq~~~~g~~g~C~y~t~~ 51 (82)
T PF12071_consen 22 AAPAQARDYPYCLQGGGWGYPGDCSYSTYE 51 (82)
T ss_pred ccchhhcCCcEEEeCCCCCCCccCCcCCHH
Confidence 334445443 234443333212355443
No 78
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=22.87 E-value=25 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=25.7
Q ss_pred CCeEEeCCEE------EEEEcCCCCceEEecccccCCCCCCC
Q 030047 53 GRVFRAGDKI------LLAYSPAQESIAELQSKEEYESCNVS 88 (183)
Q Consensus 53 ~~~F~vGD~L------vF~y~~~~h~V~ev~~k~~Y~~C~~s 88 (183)
+...+.||+- |||+...+-+|...++...|..|+..
T Consensus 6 gs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~ 47 (249)
T PF11766_consen 6 GSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQ 47 (249)
T ss_dssp TTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE
T ss_pred ccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEeccc
Confidence 4578899987 89998877788877788899988653
No 79
>PLN02792 oxidoreductase
Probab=22.37 E-value=1.2e+02 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=34.0
Q ss_pred ccCCCe--EEEcCCccceEEEcCCCCCcCCCCeEEEEecCCCCC
Q 030047 94 YTDGLD--VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQPHQ 135 (183)
Q Consensus 94 ~~~G~~--~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~ 135 (183)
...|-. +|..|.||..+|=|-..-|=..||.+.+.|.+...+
T Consensus 466 ~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~ 509 (536)
T PLN02792 466 YPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHS 509 (536)
T ss_pred CCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCc
Confidence 334443 577899999999999989999999999999976543
No 80
>PRK10883 FtsI repressor; Provisional
Probab=22.10 E-value=4.2e+02 Score=24.79 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=44.3
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCCCCCCCCCcccccCCC---eEEEcC-CccceEEEcCCCC----
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLD-GEGIHYFVSSKYD---- 117 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~-~~G~~YFic~v~~---- 117 (183)
.+++.||.|..++.+.- |.+. +..+ ..+.. ..+ ...|. ..++++ .+|++||=+-..+
T Consensus 79 ir~~~Gd~v~v~v~N~L~~~ttiHwHGl~-~~~~-~~~g~--~~~---I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~ 151 (471)
T PRK10883 79 IRVWKGDDVKLIYSNRLTEPVSMTVSGLQ-VPGP-LMGGP--ARM---MSPNADWAPVLPIRQNAATCWYHANTPNRMAQ 151 (471)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeECCcc-CCCC-CCCCc--ccc---CCCCCeEEEEEecCCCceeeEEccCCCCchhh
Confidence 58889999999997643 5555 3222 11211 112 22333 245555 4899999665432
Q ss_pred CcCCCCeEEEEecCCC
Q 030047 118 NCKNGLKLHVNVLPQP 133 (183)
Q Consensus 118 HC~~GmKl~I~V~~~~ 133 (183)
+-..|+.-.+.|....
T Consensus 152 qv~~GL~G~lII~d~~ 167 (471)
T PRK10883 152 HVYNGLAGMWLVEDEV 167 (471)
T ss_pred hHhcCCeEEEEEeCCc
Confidence 4457998888887653
No 81
>PRK11372 lysozyme inhibitor; Provisional
Probab=21.94 E-value=3.5e+02 Score=20.32 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCceEEeccc--ccCCCCCCCCCcccccCCCeE
Q 030047 59 GDKILLAYSPAQESIAELQSK--EEYESCNVSNPIRMYTDGLDV 100 (183)
Q Consensus 59 GD~LvF~y~~~~h~V~ev~~k--~~Y~~C~~s~~~~~~~~G~~~ 100 (183)
+|.+.|.|+...+...++++. .-|. ++.+..|+.|+..
T Consensus 50 ~~~v~l~~~~~~~~L~~~~SASGArY~----~g~~~fWtKG~eA 89 (109)
T PRK11372 50 RQEVSFVYDNQLLHLKQGISASGARYT----DGIYVFWSKGDEA 89 (109)
T ss_pred CCeEEEEECCEEEEEEEeeccCcCcEe----CCcEEEEEeCCeE
Confidence 788889997665555555432 3343 2345566777554
No 82
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=21.76 E-value=1.2e+02 Score=23.93 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCCCeEEEEecCCCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 134 (183)
.+++. +|..|-|.+ ..|..||++...+.+...
T Consensus 100 ~~~~~-pG~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVS-PGNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEEC-CCCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 57887 499999996 699999999998886543
No 83
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=21.16 E-value=74 Score=21.10 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.5
Q ss_pred CCCeEEeCCEEEEEEcC
Q 030047 52 AGRVFRAGDKILLAYSP 68 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~ 68 (183)
.++.|..||.|.|.+..
T Consensus 15 ~~~pv~~Gd~i~~~~~~ 31 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPFFG 31 (64)
T ss_dssp TTEEEETT-EEEEEETT
T ss_pred cCCCccCCCEEEEEeCC
Confidence 45789999999999974
No 84
>PRK10861 signal peptidase I; Provisional
Probab=20.82 E-value=2.3e+02 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.8
Q ss_pred CCeEEeCCEEEEEEcC
Q 030047 53 GRVFRAGDKILLAYSP 68 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~ 68 (183)
....+-||.++|++..
T Consensus 123 ~~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 123 TGHPKRGDIVVFKYPE 138 (324)
T ss_pred cCCCCCCCEEEEecCC
Confidence 3567889999999965
No 85
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=20.72 E-value=1.1e+02 Score=21.40 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=27.7
Q ss_pred ceEEEecCC---CCCCCC-------CCCcccCCCCeEEeCCEEEEEEc
Q 030047 30 QVHHVVGGD---RGWDSS-------SDVASWSAGRVFRAGDKILLAYS 67 (183)
Q Consensus 30 a~~~~VGg~---~GW~~~-------~~Y~~Wa~~~~F~vGD~LvF~y~ 67 (183)
..-+++|+. ..|+.. .++..|.....+..|+.+.|+|-
T Consensus 15 e~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 15 QNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred CEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 356788874 359753 35677877777888999999994
No 86
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.57 E-value=1.3e+02 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=23.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEEC
Confidence 3567899999999985 77765 888887764
Done!