Query 030047
Match_columns 183
No_of_seqs 189 out of 833
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 1.9E-45 6.5E-50 288.7 5.1 114 29-142 2-119 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.1E-42 3.9E-47 263.0 5.6 103 30-133 2-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 8.4E-42 2.9E-46 260.8 6.6 104 31-135 2-109 (116)
4 2cbp_A Cucumber basic protein; 100.0 4.1E-40 1.4E-44 243.7 7.2 96 31-130 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 3.6E-36 1.2E-40 220.7 8.1 91 31-130 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 3.5E-12 1.2E-16 97.6 8.8 97 27-130 13-139 (140)
7 2cal_A Rusticyanin; iron respi 99.2 2.4E-11 8.2E-16 95.6 7.0 77 53-130 62-154 (154)
8 1bxv_A Plastocyanin; copper pr 99.2 4.9E-11 1.7E-15 83.9 6.6 85 32-130 4-91 (91)
9 2aan_A Auracyanin A; cupredoxi 98.9 7.6E-09 2.6E-13 78.9 10.1 95 28-130 16-139 (139)
10 1iuz_A Plastocyanin; electron 98.9 1.7E-09 5.7E-14 77.8 5.9 90 32-130 3-98 (98)
11 1pmy_A Pseudoazurin; electron 98.9 4.3E-09 1.5E-13 79.9 7.9 83 36-132 11-95 (123)
12 1paz_A Pseudoazurin precursor; 98.9 5.1E-09 1.8E-13 79.5 7.7 81 36-131 11-94 (123)
13 2gim_A Plastocyanin; beta shee 98.9 1.3E-08 4.6E-13 73.4 9.1 91 31-130 4-105 (106)
14 1plc_A Plastocyanin; electron 98.8 1.2E-08 4E-13 73.1 7.9 90 32-130 2-99 (99)
15 1kdj_A Plastocyanin; electron 98.8 2E-08 6.9E-13 72.1 7.6 90 32-130 2-102 (102)
16 3ef4_A Pseudoazurin, blue copp 98.7 3.5E-08 1.2E-12 75.4 8.5 82 36-131 10-95 (124)
17 2plt_A Plastocyanin; electron 98.7 1E-08 3.5E-13 73.1 5.2 91 31-130 2-98 (98)
18 1b3i_A PETE protein, protein ( 98.7 2.9E-08 1E-12 70.6 7.5 88 32-130 4-97 (97)
19 3erx_A Pseudoazurin; copper pr 98.7 1.5E-08 5E-13 77.2 6.0 71 52-131 21-94 (123)
20 3tu6_A Pseudoazurin (blue copp 98.7 2.2E-08 7.5E-13 76.7 6.8 82 36-132 12-97 (127)
21 1byp_A Protein (plastocyanin); 98.7 4.2E-08 1.4E-12 70.1 7.5 90 32-130 2-99 (99)
22 1pcs_A Plastocyanin; electron 98.6 9.2E-08 3.1E-12 68.1 6.2 90 31-130 3-98 (98)
23 3c75_A Amicyanin; copper prote 98.3 1.3E-06 4.5E-11 66.5 7.1 69 52-130 60-132 (132)
24 1cuo_A Protein (azurin ISO-2); 98.1 1.9E-05 6.4E-10 60.3 8.7 91 32-130 4-128 (129)
25 2ux6_A Pseudoazurin; type-1 co 98.0 9.7E-06 3.3E-10 61.1 6.2 70 52-131 21-92 (122)
26 4hci_A Cupredoxin 1; structura 98.0 5.6E-06 1.9E-10 59.4 3.9 67 52-130 28-100 (100)
27 3ay2_A Lipid modified azurin p 98.0 3.4E-05 1.1E-09 61.6 8.7 93 30-130 42-166 (167)
28 3cvb_A Plastocyanin; cupredoxi 97.9 1.5E-05 5.3E-10 56.8 6.0 88 32-130 4-104 (105)
29 1id2_A Amicyanin; beta barrel, 97.8 5.1E-05 1.7E-09 55.2 6.7 69 52-130 34-106 (106)
30 2ov0_A Amicyanin; beta-sandwic 97.8 4E-05 1.4E-09 55.5 5.8 82 30-130 18-105 (105)
31 2ccw_A Azurin II, AZN-2; elect 97.7 0.00029 9.8E-09 53.7 9.7 89 32-130 4-128 (129)
32 1nwp_A Azurin; electron transp 97.7 0.00014 4.7E-09 55.4 7.8 91 32-130 4-128 (128)
33 2iaa_C Azurin; quinoprotein, t 97.7 0.00018 6.2E-09 54.8 8.4 91 32-130 3-127 (128)
34 1iko_P Ephrin-B2; greek KEY, g 97.5 2.8E-05 9.5E-10 62.9 1.6 79 57-136 27-145 (178)
35 1iby_A Nitrosocyanin; RED copp 96.8 0.003 1E-07 45.6 6.4 67 52-130 38-111 (112)
36 2cua_A Protein (CUA); CUA cent 96.5 0.0064 2.2E-07 46.4 6.6 67 52-130 60-134 (135)
37 3czu_B Ephrin-A1; ATP-binding, 95.8 0.0089 3E-07 48.3 4.3 75 54-133 50-162 (182)
38 3d12_B Ephrin-B3; beta propell 95.6 0.0076 2.6E-07 46.9 3.4 74 55-130 23-140 (141)
39 1shx_A Ephrin-A5; ephrin signa 95.6 0.015 5E-07 45.1 5.0 76 54-133 23-135 (138)
40 2x11_B Ephrin-A5; receptor-sig 95.6 0.013 4.5E-07 47.2 4.8 77 54-134 52-165 (177)
41 2vsm_B Ephrin-B2; developmenta 95.2 0.016 5.4E-07 45.0 3.9 75 56-131 25-139 (140)
42 2dv6_A Nitrite reductase; elec 94.9 0.04 1.4E-06 48.5 6.0 74 52-133 55-134 (447)
43 3fsa_A Azurin; copper, cupredo 94.7 0.33 1.1E-05 36.7 10.1 85 33-130 5-125 (125)
44 1fwx_A Nitrous oxide reductase 93.2 0.18 6.2E-06 47.2 7.2 68 53-132 514-593 (595)
45 2wo3_B Ephrin-A2; transferase- 93.0 0.14 4.6E-06 40.5 5.0 74 55-133 33-145 (157)
46 3s8f_B Cytochrome C oxidase su 92.7 0.26 8.8E-06 39.0 6.4 68 52-130 93-167 (168)
47 3sbq_A Nitrous-oxide reductase 92.0 0.19 6.6E-06 47.3 5.6 67 52-131 558-637 (638)
48 3hei_B Ephrin-A1; EPH receptor 90.0 0.24 8.2E-06 38.0 3.5 73 55-130 23-131 (132)
49 1oe1_A Dissimilatory copper-co 85.2 1.9 6.3E-05 36.4 6.6 76 54-133 67-154 (336)
50 1mzy_A Copper-containing nitri 84.7 2 6.8E-05 36.2 6.5 75 54-132 66-153 (333)
51 1kbv_A ANIA, major outer membr 78.2 3 0.0001 35.3 5.3 75 53-132 71-157 (327)
52 2zoo_A Probable nitrite reduct 74.1 2.8 9.7E-05 36.6 4.1 76 53-133 61-148 (442)
53 3l6w_A Hemocyanin 1; cupredoxi 73.2 2.5 8.4E-05 38.8 3.6 75 54-130 413-491 (491)
54 1oe1_A Dissimilatory copper-co 69.7 3.2 0.00011 35.0 3.3 35 100-134 286-321 (336)
55 2bw4_A Copper-containing nitri 67.7 8.3 0.00028 32.4 5.5 75 54-132 73-159 (340)
56 1fft_B Ubiquinol oxidase; elec 64.1 29 0.00098 29.8 8.3 65 53-130 152-225 (315)
57 3gdc_A Multicopper oxidase; be 59.2 22 0.00074 29.3 6.5 78 54-133 68-156 (288)
58 1cyx_A CYOA; electron transpor 57.0 10 0.00034 30.9 3.9 64 54-130 43-115 (205)
59 1mzy_A Copper-containing nitri 56.5 6.2 0.00021 33.1 2.7 33 100-132 286-319 (333)
60 3hb3_B Cytochrome C oxidase su 54.3 10 0.00034 32.4 3.6 31 100-132 232-265 (298)
61 3iuw_A Activating signal coint 53.7 5.1 0.00017 28.2 1.4 16 54-69 36-52 (83)
62 2gsm_B Cytochrome C oxidase su 52.0 12 0.0004 31.3 3.6 30 100-131 214-246 (262)
63 1v54_B Cytochrome C oxidase po 51.6 11 0.00037 30.8 3.3 30 100-131 183-215 (227)
64 1v10_A Laccase; multicopper bl 45.2 38 0.0013 30.4 6.1 34 100-133 117-151 (521)
65 3gdc_A Multicopper oxidase; be 44.5 9.3 0.00032 31.6 1.8 32 100-131 257-288 (288)
66 1sdd_A Coagulation factor V; c 42.4 3.6 0.00012 34.4 -1.0 33 100-132 269-301 (306)
67 2zwn_A Two-domain type laccase 41.4 42 0.0014 28.2 5.6 81 55-136 38-131 (339)
68 2z0t_A Putative uncharacterize 40.5 8.2 0.00028 28.3 0.8 28 54-84 32-59 (109)
69 2hzs_I RNA polymerase II media 37.6 0.37 1.3E-05 26.7 -5.2 19 53-71 4-22 (27)
70 1kbv_A ANIA, major outer membr 36.3 22 0.00077 29.8 3.0 34 100-133 275-309 (327)
71 1aoz_A Ascorbate oxidase; oxid 36.2 98 0.0034 27.8 7.4 77 53-133 35-125 (552)
72 1zpu_A Iron transport multicop 35.1 91 0.0031 28.0 7.0 76 54-133 36-126 (534)
73 4i1k_A B3 domain-containing tr 33.0 26 0.00089 26.4 2.6 18 52-69 113-130 (146)
74 2q9o_A Laccase-1; multicopper 31.9 69 0.0023 29.0 5.7 75 54-132 69-158 (559)
75 4dny_A Metalloprotease STCE; m 30.4 9.9 0.00034 28.7 -0.2 15 58-72 77-91 (126)
76 1yel_A AT1G16640; CESG, protei 30.1 25 0.00086 24.6 2.0 19 52-70 74-92 (104)
77 2k75_A Uncharacterized protein 29.7 17 0.00059 25.8 1.0 29 32-65 41-69 (106)
78 3t6v_A Laccase; beta barrel, o 29.4 1.1E+02 0.0037 27.3 6.5 34 100-133 97-131 (495)
79 3g5w_A Multicopper oxidase typ 29.2 68 0.0023 26.8 4.8 79 55-134 37-128 (318)
80 1xne_A Hypothetical protein PF 28.7 13 0.00045 27.3 0.2 27 54-84 33-59 (113)
81 1whl_A Cylindromatosis tumor s 28.7 57 0.002 22.9 3.6 28 54-81 6-36 (95)
82 3kw8_A Laccase, putative coppe 28.2 32 0.0011 28.1 2.5 35 100-134 231-268 (276)
83 3pxl_A Laccase; 4-copper prote 27.7 1.2E+02 0.0042 27.0 6.5 34 100-133 96-130 (499)
84 2zoo_A Probable nitrite reduct 27.5 46 0.0016 28.7 3.6 35 100-134 265-300 (442)
85 3sqr_A Laccase; multicopper ox 25.8 1.6E+02 0.0056 26.9 7.1 33 100-132 156-188 (580)
86 3t9w_A Small laccase, multi-co 25.7 32 0.0011 28.5 2.2 31 104-134 260-290 (299)
87 2uxt_A Protein SUFI, SUFI; oxi 25.3 53 0.0018 28.8 3.6 73 54-133 52-140 (451)
88 4he6_A Peptidase family U32; u 24.0 26 0.0009 23.8 1.1 18 52-69 26-43 (89)
89 2dv6_A Nitrite reductase; elec 23.8 54 0.0018 28.2 3.3 34 100-133 402-435 (447)
90 1sdd_B Coagulation factor V; c 23.1 42 0.0014 30.8 2.6 32 100-131 296-327 (647)
91 3tas_A Small laccase, multi-co 23.1 1E+02 0.0035 25.5 4.8 31 104-134 244-274 (313)
92 3cg8_A Laccase; oxidoreductase 22.6 36 0.0012 28.9 1.9 31 104-134 279-309 (343)
93 3m62_B UV excision repair prot 21.0 47 0.0016 23.2 2.0 17 119-135 62-78 (106)
94 2kbn_A Conserved protein; nucl 20.5 37 0.0013 24.1 1.3 33 31-66 37-71 (109)
95 2j5w_A Ceruloplasmin, ferroxid 20.4 55 0.0019 32.2 2.9 77 53-135 272-360 (1065)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.9e-45 Score=288.66 Aligned_cols=114 Identities=29% Similarity=0.582 Sum_probs=101.0
Q ss_pred cceEEEecCCCCCCCC---CCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEc-C
Q 030047 29 AQVHHVVGGDRGWDSS---SDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPL-D 104 (183)
Q Consensus 29 ~a~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L-~ 104 (183)
++++|+|||+.||+++ .||++||++|+|+|||+|+|+|.+++|+|+||.+|++|+.|+.++++..+++|++.|+| +
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~ 81 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD 81 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence 4679999999999998 78999999999999999999999999999998799999999999999999999999999 9
Q ss_pred CccceEEEcCCCCCcCCCCeEEEEecCCCCCCCCCCcc
Q 030047 105 GEGIHYFVSSKYDNCKNGLKLHVNVLPQPHQSSEVAKV 142 (183)
Q Consensus 105 ~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~~p~p~~ 142 (183)
++|++||||++++||++||||+|+|....++++++|++
T Consensus 82 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~p~~ 119 (138)
T 1jer_A 82 ELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPS 119 (138)
T ss_dssp SSEEEEEECCSTTTGGGTCEEEEEEECCC---------
T ss_pred CCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCCCCC
Confidence 99999999999999999999999999876655544443
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.1e-42 Score=262.95 Aligned_cols=103 Identities=33% Similarity=0.692 Sum_probs=97.9
Q ss_pred ceEEEecCCCCCCCC--CCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCcc
Q 030047 30 QVHHVVGGDRGWDSS--SDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEG 107 (183)
Q Consensus 30 a~~~~VGg~~GW~~~--~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~G 107 (183)
|++|+|||+.||+++ .||++||++++|+|||+|+|+|.+++|+|+|| ++++|+.|+.++|+..+++|++.|+|+++|
T Consensus 2 a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G 80 (109)
T 1ws8_A 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQV-DQEQFKSCNSSSPAASYTSGADSIPLKRPG 80 (109)
T ss_dssp CCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEE-CHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred CcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEE-ChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence 579999999999998 79999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ceEEEcCCCCCcCCCCeEEEEecCCC
Q 030047 108 IHYFVSSKYDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 108 ~~YFic~v~~HC~~GmKl~I~V~~~~ 133 (183)
++||||++++||++||||+|+|.+..
T Consensus 81 ~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 81 TFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp EEEEECCSTTTTTTTCEEEEEECC--
T ss_pred CEEEECCCCCcccCCCEEEEEEcCCC
Confidence 99999999999999999999998653
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=8.4e-42 Score=260.80 Aligned_cols=104 Identities=27% Similarity=0.545 Sum_probs=95.8
Q ss_pred eEEEecCCCCCCCC---CCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCcc
Q 030047 31 VHHVVGGDRGWDSS---SDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEG 107 (183)
Q Consensus 31 ~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~G 107 (183)
++|+|||+.||+++ .+|++||++++|++||+|+|+|.+++|+|+|| +|++|++|+.++++..+++|++.|+|+++|
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V-~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G 80 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVV-TKDAFDNCKKENPISHMTTPPVKIMLNTTG 80 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEE-CHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEE-ChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence 48999999999984 68999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ceEEEcCCCCCcCCCCeEEE-EecCCCCC
Q 030047 108 IHYFVSSKYDNCKNGLKLHV-NVLPQPHQ 135 (183)
Q Consensus 108 ~~YFic~v~~HC~~GmKl~I-~V~~~~~~ 135 (183)
++||||++++||++||||+| +|.+..++
T Consensus 81 ~~yFic~~~~HC~~Gmkl~In~V~~~~~~ 109 (116)
T 1x9u_A 81 PQYYICTVGDHCRVGQKLSINVVGAGGAG 109 (116)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEECC----
T ss_pred CEEEECCCCCccccCCEEEEEEECCCCCC
Confidence 99999999999999999999 88765443
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4.1e-40 Score=243.66 Aligned_cols=96 Identities=35% Similarity=0.765 Sum_probs=92.2
Q ss_pred eEEEecCCCCCCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCccceE
Q 030047 31 VHHVVGGDRGWDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHY 110 (183)
Q Consensus 31 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~Y 110 (183)
++|+|||+.||++ +|++||++++|++||+|+|+|.+++|+|+|| ++++|+.|+.++|+..+++|++.|+| ++|++|
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~y 76 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVV-NQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSY 76 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEE-CHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEE
T ss_pred CEEEECCcCCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEE-CHHHCCccCCCCCcccccCCCeEEEe-cCCCEE
Confidence 3799999999997 6999999999999999999999999999998 89999999999999999999999999 899999
Q ss_pred EEcCCCCCcCCCCeEEEEec
Q 030047 111 FVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 111 Fic~v~~HC~~GmKl~I~V~ 130 (183)
|||++++||++||||+|+|+
T Consensus 77 Fic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 77 FICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EECCSTTTGGGTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=3.6e-36 Score=220.66 Aligned_cols=91 Identities=30% Similarity=0.615 Sum_probs=86.6
Q ss_pred eEEEecCCCCCCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcccccCCCeEEEcCCccceE
Q 030047 31 VHHVVGGDRGWDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYTDGLDVIPLDGEGIHY 110 (183)
Q Consensus 31 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~Y 110 (183)
++|+| ||+++ ++||++++|++||+|+|+|.+++|+|+|| ++++|+.|+.++|+..+++|++.|+|+ +|++|
T Consensus 1 ~~y~V----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~y 71 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAV-NGRGYASCSAPRGARTYSSGQDRIKLT-RGQNY 71 (91)
T ss_dssp CEEEE----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEE-CHHHHHTTCCCTTCEEECSSEEEEECC-SEEEE
T ss_pred CEEEE----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEE-CHHHcCCcCCCCCcccccCCCcEEEeC-CCCeE
Confidence 37899 89987 99999999999999999999999999998 899999999999999999999999996 89999
Q ss_pred EEcCCCCCcCCCCeEEEEec
Q 030047 111 FVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 111 Fic~v~~HC~~GmKl~I~V~ 130 (183)
|||++++||++||||+|+|.
T Consensus 72 Fic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 72 FICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EECCSTTTTTTTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.34 E-value=3.5e-12 Score=97.57 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=66.2
Q ss_pred cccceEEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-----CCCceEEecccc-cCCC--------------C
Q 030047 27 AAAQVHHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-----AQESIAELQSKE-EYES--------------C 85 (183)
Q Consensus 27 ~a~a~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-----~~h~V~ev~~k~-~Y~~--------------C 85 (183)
.+...++.|+-. .+|.+.+ +..+++.||++.|.+.+ ..|+++.. +.. ++.. .
T Consensus 13 ~~~~~~v~V~~~~~~~~F~P------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (140)
T 1qhq_A 13 ETPAQTVEVRAAPDALAFAQ------TSLSLPANTVVRLDFVNQNNLGVQHNWVLV-NGGDDVAAAVNTAAQNNADALFV 85 (140)
T ss_dssp SCCSEEEEEEBCSSSSSBSC------SEEEEETTCEEEEEEEECCSSCCCBCCEEE-SSSHHHHHHHHHHHHTCGGGTTC
T ss_pred cCCCEEEEEEEeCCCceEeC------CeEEECCCCEEEEEEECCCCCCCceeEEEe-ccCcchhhhhhhhhhhccccccc
Confidence 445567878764 3588764 56789999999998876 57998854 211 1111 1
Q ss_pred ---CCCC------CcccccCCCeEEEcCCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 86 ---NVSN------PIRMYTDGLDVIPLDGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 86 ---~~s~------~~~~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+..+ .+....++...|+++++|.|||+|++++||+.|||..|+|.
T Consensus 86 ~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 86 PPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp CCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred CccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 0000 11112233456888999999999999999999999999996
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.20 E-value=2.4e-11 Score=95.60 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCeEEeCCEEEEEEcCC----CCceEEecccccCCCCCCCCCccc-------ccCCC---e--EEEcCCccceEEEcCCC
Q 030047 53 GRVFRAGDKILLAYSPA----QESIAELQSKEEYESCNVSNPIRM-------YTDGL---D--VIPLDGEGIHYFVSSKY 116 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~----~h~V~ev~~k~~Y~~C~~s~~~~~-------~~~G~---~--~v~L~~~G~~YFic~v~ 116 (183)
..++++||+|+|++.+. .|++..+...+.|+.|.....+.. ...|. . .|++ ++|+|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 35889999999999763 599997655678888876544322 12333 3 5678 999999999999
Q ss_pred CCcCCCCeEEEEec
Q 030047 117 DNCKNGLKLHVNVL 130 (183)
Q Consensus 117 ~HC~~GmKl~I~V~ 130 (183)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.17 E-value=4.9e-11 Score=83.90 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=61.1
Q ss_pred EEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEecccccCCCCCCCCCcccccCC-CeEEEcCCccc
Q 030047 32 HHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEEYESCNVSNPIRMYTDG-LDVIPLDGEGI 108 (183)
Q Consensus 32 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G-~~~v~L~~~G~ 108 (183)
+..+|++ .+|.+.+ +..++++||+|.|++.. ..|+|... +...+. ........| ...++++++|.
T Consensus 4 ~v~~~~~~~~~~f~P------~~i~v~~Gd~V~~~n~~~~~H~v~~~-~~~~~~-----~~~~~~~~g~~~~~~f~~~G~ 71 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP------STIEIQAGDTVQWVNNKLAPHNVVVE-GQPELS-----HKDLAFSPGETFEATFSEPGT 71 (91)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEET-TCGGGC-----EEEEECSTTCEEEEECCSCEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEe-CCCccC-----cccceeCCCCEEEEEeCCCEE
Confidence 4567764 4566654 45689999999999875 68999843 432221 111233445 35788999999
Q ss_pred eEEEcCCCCCcCCCCeEEEEec
Q 030047 109 HYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 109 ~YFic~v~~HC~~GmKl~I~V~ 130 (183)
|+|+|. .||..||+..|.|.
T Consensus 72 y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 72 YTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEeC--CCccCCCEEEEEEC
Confidence 999999 89999999999984
No 9
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.92 E-value=7.6e-09 Score=78.88 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=64.2
Q ss_pred ccceEEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcCC----CCceEEecccc------------------cCCC
Q 030047 28 AAQVHHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSPA----QESIAELQSKE------------------EYES 84 (183)
Q Consensus 28 a~a~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~----~h~V~ev~~k~------------------~Y~~ 84 (183)
++..++.||.. .++.+.+ +..++++||++.|++.+. .|++... +.. +|..
T Consensus 16 ~~~~~V~v~~~~~~~~F~p------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~-~~~~~~~~~~~~~~~~~g~~~~~~p 88 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDK------TELTVSAGQTVTIRFKNNSAVQQHNWILV-KGGEAEAANIANAGLSAGPAANYLP 88 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSC------SEEEECTTCEEEEEEECCCSSCCBCCEEE-SSCHHHHHHHHHHHHHHCGGGTTCC
T ss_pred CcCEEEEEEecCCccEEcC------CeEEECCCCEEEEEEEeCCCCCCeeEEEe-ccccccchhhhhhhhcccccccccC
Confidence 44556777532 3566654 456899999999888753 6998854 322 5666
Q ss_pred CCCCCCc---ccccCCCe---EEEcCCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 85 CNVSNPI---RMYTDGLD---VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 85 C~~s~~~---~~~~~G~~---~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
|+..+.+ .....|.+ .|+.+++|.|+|+|.+++||+ ||+..|.|.
T Consensus 89 ~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 89 ADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp SCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred cccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 6533211 12344543 455568999999999999999 999999884
No 10
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.91 E-value=1.7e-09 Score=77.84 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=60.7
Q ss_pred EEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEeccc---ccCCCCCCCCCcccccCCCe-EEEcCC
Q 030047 32 HHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSK---EEYESCNVSNPIRMYTDGLD-VIPLDG 105 (183)
Q Consensus 32 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k---~~Y~~C~~s~~~~~~~~G~~-~v~L~~ 105 (183)
+..+|++ .++.+.+ +..++++||++.|.+.. ..|+|... +. ++++.+..+........|.+ .+++++
T Consensus 3 ~V~m~~~~~~~~F~P------~~i~v~~GdtV~~~n~~~~~H~v~~~-~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~ 75 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVP------SKISVAAGEAIEFVNNAGFPHNIVFD-EDAVPAGVDADAISYDDYLNSKGETVVRKLST 75 (98)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTCEEEEEECSSCCEEEEEC-TTSSCTTCCHHHHCEEEEECSTTCEEEEECCS
T ss_pred EEEEecCCCCcEEeC------CEEEECCCCEEEEEECCCCCEEEEEe-CCCCccccccccccccccccCCCCEEEEEcCC
Confidence 4556553 4566654 45789999999999876 48999843 21 12222211111113445553 788999
Q ss_pred ccceEEEcCCCCCcCCCCeEEEEec
Q 030047 106 EGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 106 ~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+|.|+|+|.. ||+.||+..|.|.
T Consensus 76 ~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 76 PGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp CEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CEEEEEEchh--hccCCCEEEEEEC
Confidence 9999999996 9999999999984
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.89 E-value=4.3e-09 Score=79.95 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=58.4
Q ss_pred cCCCCCCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCcc-cccCCC-eEEEcCCccceEEEc
Q 030047 36 GGDRGWDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIR-MYTDGL-DVIPLDGEGIHYFVS 113 (183)
Q Consensus 36 Gg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~-~~~~G~-~~v~L~~~G~~YFic 113 (183)
|++.++.+.+ +..++++||++.|.+....|+|+.. +.|....... ....|. ..++++++|.|+|+|
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~n~~~~H~v~~~------~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1pmy_A 11 GPGGMMVFDP------ALVRLKPGDSIKFLPTDKGHNVETI------KGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKC 78 (123)
T ss_dssp ETTEEEEEES------SEEEECTTCEEEEECSSSSCCCEEC------TTSSCTTCCCCBCCTTSCEEEECCSCEEEEEEC
T ss_pred cCCCCceEeC------CEEEECCCCEEEEEECCCCcEEEEe------cccCCCCccceecCCCCEEEEEeCCCeEEEEEe
Confidence 5443455543 4568999999999998878999843 1232222111 112233 478999999999999
Q ss_pred CCCCCcCCCCeEEEEecCC
Q 030047 114 SKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 114 ~v~~HC~~GmKl~I~V~~~ 132 (183)
+ .||..||+..|+|.+.
T Consensus 79 ~--~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 79 A--PHYMMGMVALVVVGDK 95 (123)
T ss_dssp S--TTTTTTCEEEEEESSC
T ss_pred C--CccccCCEEEEEEcCC
Confidence 8 4999999999999853
No 12
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.87 E-value=5.1e-09 Score=79.50 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=57.9
Q ss_pred cCCCCCCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCccccc--CCC-eEEEcCCccceEEE
Q 030047 36 GGDRGWDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYT--DGL-DVIPLDGEGIHYFV 112 (183)
Q Consensus 36 Gg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~--~G~-~~v~L~~~G~~YFi 112 (183)
|++.++.+.+ +..++++||++.|.+....|+|+.. +.|...+.. .+. .|. ..++++++|.|+|+
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~~~~~~H~v~~~------~~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~ 77 (123)
T 1paz_A 11 GAEGAMVFEP------AYIKANPGDTVTFIPVDKGHNVESI------KDMIPEGAE-KFKSKINENYVLTVTQPGAYLVK 77 (123)
T ss_dssp ETTEEEEEES------SEEEECTTCEEEEEESSSSCCCEEC------TTCSCTTCC-CCBCCTTCCEEEECCSCEEEEEE
T ss_pred cCCCCceEeC------CEEEECCCCEEEEEECCCCeEEEEe------cccCCCCcc-ceecCCCCEEEEEeCCCEEEEEE
Confidence 5443455543 4578999999999998878999842 123222111 122 233 47899999999999
Q ss_pred cCCCCCcCCCCeEEEEecC
Q 030047 113 SSKYDNCKNGLKLHVNVLP 131 (183)
Q Consensus 113 c~v~~HC~~GmKl~I~V~~ 131 (183)
|+ .||..||+..|+|.+
T Consensus 78 C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 78 CT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp CT--TTGGGTCEEEEEESS
T ss_pred eC--CcccCCCEEEEEEcC
Confidence 98 599999999999985
No 13
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.85 E-value=1.3e-08 Score=73.42 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=59.9
Q ss_pred eEEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEecccccCC-----CCCCCCCcccccCCC-eEEE
Q 030047 31 VHHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEEYE-----SCNVSNPIRMYTDGL-DVIP 102 (183)
Q Consensus 31 ~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~Y~-----~C~~s~~~~~~~~G~-~~v~ 102 (183)
.+..+|.+ .++.+.+ +..++++||++.|.+.. ..|++. +.+....+ .............|. ..++
T Consensus 4 ~~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~n~~~~~H~~~-~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~~~ 76 (106)
T 2gim_A 4 YTVKLGSDKGLLVFEP------AKLTIKPGDTVEFLNNKVPPHNVV-FDAALNPAKSADLAKSLSHKQLLMSPGQSTSTT 76 (106)
T ss_dssp EEEEESCTTCCSSEES------SEEEECTTCEEEEEECSSSCCCBE-ECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEE
T ss_pred EEEEEEecCCcceEcC------CEEEECCCCEEEEEECCCCCceEE-EeCCCCcccccccchhccccceeeCCCCEEEEE
Confidence 35667654 5677654 45689999999999775 579998 32221110 000000011233343 4678
Q ss_pred c---CCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 103 L---DGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 103 L---~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+ +++|.|+|+|. .||+.||+..|.|.
T Consensus 77 f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 77 FPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 8 89999999999 89999999999986
No 14
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.83 E-value=1.2e-08 Score=73.11 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=59.6
Q ss_pred EEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcCC-CCceEEecccc---cCCCCCCC--CCcccccCCC-eEEEc
Q 030047 32 HHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSPA-QESIAELQSKE---EYESCNVS--NPIRMYTDGL-DVIPL 103 (183)
Q Consensus 32 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~---~Y~~C~~s--~~~~~~~~G~-~~v~L 103 (183)
+..+|++ .+..+.+ +..++++||++.|+...+ .|+|... +.. +.+.+... ........|. ..+++
T Consensus 2 ~v~m~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~v~~~-~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf 74 (99)
T 1plc_A 2 DVLLGADDGSLAFVP------SEFSISPGEKIVFKNNAGFPHNIVFD-EDSIPSGVDASKISMSEEDLLNAKGETFEVAL 74 (99)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTCEEEEEECSSCCBCCEEC-TTSSCTTCCHHHHCCCTTCCBCSTTCEEEEEC
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCceEEEEe-CCCCcccccccccccccCccccCCCCEEEEEE
Confidence 3456654 3455543 457899999999988764 7999843 321 11222100 0001234444 47899
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+++|.|+|+|. .||+.||+..|+|.
T Consensus 75 ~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 75 SNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCCceEEEEcC--CCcccCCEEEEEEC
Confidence 99999999999 79999999999984
No 15
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.77 E-value=2e-08 Score=72.12 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=60.0
Q ss_pred EEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEecccccCC----CCCCCC----CcccccCCC-eE
Q 030047 32 HHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEEYE----SCNVSN----PIRMYTDGL-DV 100 (183)
Q Consensus 32 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~Y~----~C~~s~----~~~~~~~G~-~~ 100 (183)
+..+|++ .++.+.+ +..++++||++.|.+.. ..|++.. .+.+.++ .|.... .......|. ..
T Consensus 2 ~V~~g~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~ 74 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP------DSITVSAGEAVEFTLVGETGHNIVF-DIPAGAPGTVASELKAASMDENDLLSEDEPSFK 74 (102)
T ss_dssp EEEESCTTCCCCEES------SEEEECTTCCEEEEECSSSCBCCEE-CCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEE-eCcccccccccchhhcccccccceecCCCCEEE
Confidence 3566764 3455543 44689999999999776 4799984 3333331 111100 111233443 47
Q ss_pred EEcCCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 101 IPLDGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 101 v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 75 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 75 AKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp ECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 88899999999999 89999999999984
No 16
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.74 E-value=3.5e-08 Score=75.40 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=59.9
Q ss_pred cCCCC--CCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCc-ccccCCC-eEEEcCCccceEE
Q 030047 36 GGDRG--WDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPI-RMYTDGL-DVIPLDGEGIHYF 111 (183)
Q Consensus 36 Gg~~G--W~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~-~~~~~G~-~~v~L~~~G~~YF 111 (183)
+|+.| +.+.+ +..+.++||++.|.+....|||+.. + .+...+.. .....|. ..++++++|.|.|
T Consensus 10 ~g~~G~~~~F~P------~~i~V~~GDTV~f~n~~~~Hnv~~~-~-----~~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y 77 (124)
T 3ef4_A 10 KDDAGNTMVFQP------GFVKVEAGDTVKFVPTDKSHNAESV-R-----EVWPEGVAPVKGGFSKEVVFNAEKEGLYVL 77 (124)
T ss_dssp ECTTSCEEEEES------SEEEECTTCEEEEECSSSSCCCEEC-T-----TTSCTTSCCCBCCTTCCEEEECCSSEEEEE
T ss_pred cCCCCceeEEeC------CEEEECCCCEEEEEECCCCccEEEe-C-----CcCCCCccccccCCCCEEEEEeCCCeEEEE
Confidence 44455 77765 5678999999999998889999942 1 13222211 1112333 4789999999999
Q ss_pred EcCCCCCcCCCCeEEEEecC
Q 030047 112 VSSKYDNCKNGLKLHVNVLP 131 (183)
Q Consensus 112 ic~v~~HC~~GmKl~I~V~~ 131 (183)
+|. .||..||+-.|+|..
T Consensus 78 ~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 78 KCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp ECT--TTGGGTCEEEEEESS
T ss_pred EcC--CCCcCCCEEEEEECC
Confidence 997 699999999999986
No 17
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.74 E-value=1e-08 Score=73.06 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=59.9
Q ss_pred eEEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcCC-CCceEEecccc---cCCCCCCCCCcccccCCC-eEEEcC
Q 030047 31 VHHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSPA-QESIAELQSKE---EYESCNVSNPIRMYTDGL-DVIPLD 104 (183)
Q Consensus 31 ~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~---~Y~~C~~s~~~~~~~~G~-~~v~L~ 104 (183)
.+..+|++ .++.+.+ +..++++||++.|....+ .|++... +.. +++.+...........|. ..++++
T Consensus 2 ~~V~m~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~-~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~ 74 (98)
T 2plt_A 2 ATVKLGADSGALEFVP------KTLTIKSGETVNFVNNAGFPHNIVFD-EDAIPSGVNADAISRDDYLNAPGETYSVKLT 74 (98)
T ss_dssp EEEEESCTTCCSSEES------SEEEECTTCEEEEEECSSCCEEEEEC-GGGSCTTCCHHHHCEEEEECSTTCEEEEECC
T ss_pred EEEEEecCCCCceEeC------CEEEECCCCEEEEEECCCCceEEEEe-CCCCCCccccccccccceecCCCCEEEEEeC
Confidence 35566644 4466543 446899999999988764 7999842 211 112111110011234454 378899
Q ss_pred CccceEEEcCCCCCcCCCCeEEEEec
Q 030047 105 GEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 105 ~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
++|+|.|+|. .||+.||+..|.|.
T Consensus 75 ~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 75 AAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp SCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred CCeEEEEEcC--CccccCCeEEEEEC
Confidence 9999999999 79999999999984
No 18
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.74 E-value=2.9e-08 Score=70.62 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=58.6
Q ss_pred EEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEeccccc---CCCCCCCCCcccccCC-CeEEEcCC
Q 030047 32 HHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEE---YESCNVSNPIRMYTDG-LDVIPLDG 105 (183)
Q Consensus 32 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~---Y~~C~~s~~~~~~~~G-~~~v~L~~ 105 (183)
+..+|++ .++.+.+ +..++++||++.|.+.. ..|++... +... .+.+... . .....| ...+++++
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~-~~~~~~~~~~~~~~-~-~~~~~g~~~~~tf~~ 74 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP------KALSISAGDTVEFVMNKVGPHNVIFD-KVPAGESAPALSNT-K-LAIAPGSFYSVTLGT 74 (97)
T ss_dssp EEEEEETTTEEEEES------SEEEECTTCEEEEEECSSCCCCBEEE-ECCTTSCHHHHCBC-C-CCCSCSCCEEEECCS
T ss_pred EEEEeccCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEe-CCCCcccccccccc-c-eecCCCCEEEEEeCC
Confidence 4566653 4455543 45689999999999876 47999843 2211 0001111 1 122334 35788999
Q ss_pred ccceEEEcCCCCCcCCCCeEEEEec
Q 030047 106 EGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 106 ~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+|.|+|+|. .||+.||+..|.|.
T Consensus 75 ~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 75 PGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CSEEEEECS--STTTTTCEEEEEEC
T ss_pred CeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999 89999999999984
No 19
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.73 E-value=1.5e-08 Score=77.16 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=53.6
Q ss_pred CCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCccccc--CC-CeEEEcCCccceEEEcCCCCCcCCCCeEEEE
Q 030047 52 AGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYT--DG-LDVIPLDGEGIHYFVSSKYDNCKNGLKLHVN 128 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~--~G-~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~ 128 (183)
+..++++||++.|.+.+..|+|... + .+.+.+. ..+. .| ...++++++|.|+|+|. .||..||+-.|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~-~-----~~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~ 91 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAI-K-----EILPEGV-ESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQ 91 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEEC-T-----TSSCTTC-CCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEc-C-----CcCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEE
Confidence 5678999999999999888999842 1 1222221 1122 23 34788999999999999 799999999999
Q ss_pred ecC
Q 030047 129 VLP 131 (183)
Q Consensus 129 V~~ 131 (183)
|..
T Consensus 92 V~~ 94 (123)
T 3erx_A 92 VGD 94 (123)
T ss_dssp ESS
T ss_pred ECC
Confidence 985
No 20
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.72 E-value=2.2e-08 Score=76.66 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=58.7
Q ss_pred cCCC-CCCCCCCCcccCCCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCccccc--CC-CeEEEcCCccceEE
Q 030047 36 GGDR-GWDSSSDVASWSAGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRMYT--DG-LDVIPLDGEGIHYF 111 (183)
Q Consensus 36 Gg~~-GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~~~--~G-~~~v~L~~~G~~YF 111 (183)
|.+. +..+.+ +..++++||++.|.+.+..|+|... +. +.+.... .+. .| ...++++++|.|+|
T Consensus 12 g~~g~~~~F~P------~~i~V~~GDtVtf~n~~~~H~v~~~-~~-----~~P~g~~-~f~s~pGet~s~TF~~pG~y~y 78 (127)
T 3tu6_A 12 AADGRVMAFEP------AVIRAQPGDTVTFVAKDKGHNSALM-KG-----GAPEGAE-TWKGKINEEITVTLSKPGVYMY 78 (127)
T ss_dssp CTTSCEEEEES------SEEEECTTCEEEEECSSSSCCCEEC-TT-----CSCTTCC-CCBCCTTCCCEEECCSCEEEEE
T ss_pred CCCCcccEEeC------CEEEECCCCEEEEEECCCCceEEEc-cC-----cCCCCcc-ceecCCCCEEEEEeCCCeEEEE
Confidence 5544 355544 5578999999999998878999842 21 2121111 121 23 24789999999999
Q ss_pred EcCCCCCcCCCCeEEEEecCC
Q 030047 112 VSSKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 112 ic~v~~HC~~GmKl~I~V~~~ 132 (183)
+|. .||..||+..|.|..+
T Consensus 79 ~C~--~H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 79 QCA--PHVGMGMIGAIVVGEP 97 (127)
T ss_dssp ECT--TTGGGTCEEEEEESSC
T ss_pred EeC--CCCcCCcEEEEEECcC
Confidence 999 6999999999999864
No 21
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.70 E-value=4.2e-08 Score=70.06 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=59.3
Q ss_pred EEEecC-CCCCCCCCCCcccCCCCeEEeCCEEEEEEcCC-CCceEEecccc---cCCCCCCC--CCcccccCCC-eEEEc
Q 030047 32 HHVVGG-DRGWDSSSDVASWSAGRVFRAGDKILLAYSPA-QESIAELQSKE---EYESCNVS--NPIRMYTDGL-DVIPL 103 (183)
Q Consensus 32 ~~~VGg-~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~---~Y~~C~~s--~~~~~~~~G~-~~v~L 103 (183)
+..+|+ +.+..+.+ +..++++||++.|+.... .|++... +.. .++.+... ........|. ..+++
T Consensus 2 ~V~~~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~-~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f 74 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP------SDLSIASGEKITFKNNAGFPHNDLFD-KKEVPAGVDVTKISMPEEDLLNAPGEEYSVTL 74 (99)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTEEEEEEECSSCCBCCEEC-TTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEE
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCcceEEEe-CCCCccccccccccccccceeeCCCCEEEEEe
Confidence 345664 34566543 446899999999988764 7999842 321 12222110 0001234454 47889
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+++|.|.|+|. .||+.||+..|.|.
T Consensus 75 ~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 75 TEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCCcEEEEEcC--CccccCCEEEEEEC
Confidence 99999999999 79999999999984
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.58 E-value=9.2e-08 Score=68.14 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred eEEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEecccccCC---CCCCCCCcccccCCC-eEEEcC
Q 030047 31 VHHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEEYE---SCNVSNPIRMYTDGL-DVIPLD 104 (183)
Q Consensus 31 ~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~Y~---~C~~s~~~~~~~~G~-~~v~L~ 104 (183)
.+..+|.+ .++.+.+ +..++++||++.|.+.. ..|++... +. ... ..+..........|. ..++++
T Consensus 3 ~~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~-~~-~~pg~~~~~~~~~~~~~~pG~~~~~tf~ 74 (98)
T 1pcs_A 3 ATVKMGSDSGALVFEP------STVTIKAGEEVKWVNNKLSPHNIVFD-AD-GVPADTAAKLSHKGLLFAAGESFTSTFT 74 (98)
T ss_dssp EEEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEEC-CS-SSCHHHHHHHCEEEEECSTTCEEEEECC
T ss_pred EEEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEe-CC-CCCccccccccccccccCCCCEEEEEcC
Confidence 35566654 4566544 44689999999999875 47998842 21 100 000000011233443 467889
Q ss_pred CccceEEEcCCCCCcCCCCeEEEEec
Q 030047 105 GEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 105 ~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
++|+|+|+|. .||..||+..|.|.
T Consensus 75 ~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 75 EPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCeEEEEEcC--CccccCCeEEEEEC
Confidence 9999999999 79999999999984
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.32 E-value=1.3e-06 Score=66.49 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=47.2
Q ss_pred CCCeEEeCCEEEEEEcCC-CCceEEecccccCCCCCCCCCc--ccccCCC-eEEEcCCccceEEEcCCCCCcCCCCeEEE
Q 030047 52 AGRVFRAGDKILLAYSPA-QESIAELQSKEEYESCNVSNPI--RMYTDGL-DVIPLDGEGIHYFVSSKYDNCKNGLKLHV 127 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~~Y~~C~~s~~~--~~~~~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I 127 (183)
+..+.++||++.|..... .|+|.-. +... ..... .....|. ..++++++|+|.|+|.. |. ||+..|
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~-~~~~-----g~~~~~s~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I 129 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFK-KGIV-----GEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 129 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEEC-TTTS-----SSSCEECCCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEEe-CCCC-----CcccccccccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEE
Confidence 456889999999987654 6999842 2210 00001 1223343 36788999999999997 76 999999
Q ss_pred Eec
Q 030047 128 NVL 130 (183)
Q Consensus 128 ~V~ 130 (183)
.|.
T Consensus 130 ~V~ 132 (132)
T 3c75_A 130 IVE 132 (132)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 24
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.06 E-value=1.9e-05 Score=60.31 Aligned_cols=91 Identities=8% Similarity=0.059 Sum_probs=56.9
Q ss_pred EEEecCCCCCCCCCCCcccCCCCeEEeC-CEEEEEEcC-C-------CCceEEecccc----------------cCCCCC
Q 030047 32 HHVVGGDRGWDSSSDVASWSAGRVFRAG-DKILLAYSP-A-------QESIAELQSKE----------------EYESCN 86 (183)
Q Consensus 32 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~vG-D~LvF~y~~-~-------~h~V~ev~~k~----------------~Y~~C~ 86 (183)
+..|+.+....+.+ +..+++.| |++.|.+.+ + .|+++ +.+.. +|..=+
T Consensus 4 ~v~i~~~d~m~F~p------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~v-i~~~~~~~~~~~~~m~~~~~~~~v~~~ 76 (129)
T 1cuo_A 4 ETTVTSGDTMTYST------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWV-LAKSADVGDVAKEGAHAGADNNFVTPG 76 (129)
T ss_dssp EEEEEECSSSCCSC------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCE-EEEGGGHHHHHHHHHTTCGGGTTSCTT
T ss_pred EEEEEeCCCceEcc------CeEEEcCCCeEEEEEEEECCCCcccccccceE-EecCcchhhhHHHhhhccccccccccc
Confidence 45566555666654 45688999 977777654 2 39988 43433 221101
Q ss_pred CCCCc---ccccCCCe---EEEcC---CccceEEEcCCCCCcCCCCeEEEEec
Q 030047 87 VSNPI---RMYTDGLD---VIPLD---GEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 87 ~s~~~---~~~~~G~~---~v~L~---~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
..+-+ .....|.+ +++.+ ++|.|+|+|++++|=+ |||-.|.|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 77 DKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 11111 12344543 34443 8999999999999999 899999986
No 25
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.01 E-value=9.7e-06 Score=61.13 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=50.0
Q ss_pred CCCeEEeCCEEEEEEcCCCCceEEecccccCCCCCCCCCccc-ccCC-CeEEEcCCccceEEEcCCCCCcCCCCeEEEEe
Q 030047 52 AGRVFRAGDKILLAYSPAQESIAELQSKEEYESCNVSNPIRM-YTDG-LDVIPLDGEGIHYFVSSKYDNCKNGLKLHVNV 129 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~C~~s~~~~~-~~~G-~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V 129 (183)
...++++||++.|......|+|... + .+-....... ...| ...++++++|.|.|+|.. |+. |+..|.|
T Consensus 21 ~~i~V~~GdtV~f~n~d~~H~v~~~-~-----~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V 90 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTDKGHNVETI-K-----GMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQV 90 (122)
T ss_dssp SEEEECTTEEEEEEESSSSCCCEEC-T-----TCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCcEEEEc-c-----cccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEE
Confidence 4468899999999998778999842 2 1221111111 1123 247889999999999997 888 9999999
Q ss_pred cC
Q 030047 130 LP 131 (183)
Q Consensus 130 ~~ 131 (183)
.+
T Consensus 91 ~~ 92 (122)
T 2ux6_A 91 GD 92 (122)
T ss_dssp SS
T ss_pred eC
Confidence 85
No 26
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.96 E-value=5.6e-06 Score=59.42 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=46.8
Q ss_pred CCCeEEeCCEEEEEEcC---CCCceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCCCCcCCCCeE
Q 030047 52 AGRVFRAGDKILLAYSP---AQESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYDNCKNGLKL 125 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~---~~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~GmKl 125 (183)
+..++++||++.|.+.+ ..|++. + ..... ......|. -.++.+++|.|.|+|. .||..||+-
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~-~-~~~~~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G 95 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFT-I-KKLGI--------DVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEG 95 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEE-E-GGGTE--------EEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEE-E-ecCCc--------ceeecCCcceeEEEecccCceEEEECc--cccCCCCEE
Confidence 45789999999998754 247766 3 21111 11223343 2567789999999997 599999999
Q ss_pred EEEec
Q 030047 126 HVNVL 130 (183)
Q Consensus 126 ~I~V~ 130 (183)
.|.|+
T Consensus 96 ~i~Ve 100 (100)
T 4hci_A 96 KVIVK 100 (100)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99985
No 27
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.95 E-value=3.4e-05 Score=61.62 Aligned_cols=93 Identities=11% Similarity=0.184 Sum_probs=57.7
Q ss_pred ceEEEecCCCCCCCCCCCcccCCCCeE-EeCCEEEEEEcC--C------CCceEEeccccc---------------CCCC
Q 030047 30 QVHHVVGGDRGWDSSSDVASWSAGRVF-RAGDKILLAYSP--A------QESIAELQSKEE---------------YESC 85 (183)
Q Consensus 30 a~~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~--~------~h~V~ev~~k~~---------------Y~~C 85 (183)
..++.|+.+.++.+.+ +..++ +.||++.|.+.+ . .|+++ +.+..+ |..=
T Consensus 42 ~~~V~I~~~d~m~F~P------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~v-i~~~~~~~~v~~~~m~~~~~~~v~~ 114 (167)
T 3ay2_A 42 NCAATVESNDNMQFNT------KDIQVSKACKEFTITLKHTGTQPKASMGHNLV-IAKAEDMDGVFKDGVGAADTDYVKP 114 (167)
T ss_dssp CCEEEEEECTTSCBSC------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCE-EEEGGGHHHHHHHHGGGGGGTTSCT
T ss_pred ceEEEEEeCCCceEec------ceEEEecCCCEEEEEEEECCCCccccccceEE-eccCcchhhhHHHhhhccccccccc
Confidence 3567777666777754 33455 669976666643 3 29988 434332 2110
Q ss_pred CCCCCc---ccccCCCe-EEEcC----CccceEEEcCCCCCcCCCCeEEEEec
Q 030047 86 NVSNPI---RMYTDGLD-VIPLD----GEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 86 ~~s~~~---~~~~~G~~-~v~L~----~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+..+.+ .....|.+ .++++ ++|.|+|+|++++|=+ |||-.|+|.
T Consensus 115 ~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 115 DDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 111111 12344543 55554 7999999999999999 999999986
No 28
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.94 E-value=1.5e-05 Score=56.76 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=56.3
Q ss_pred EEEecCC-CCCCCCCCCcccCCCCeEEeCCEEEEEEcC-CCCceEEecccccCCCCCC-------CCCcccccCCC-eEE
Q 030047 32 HHVVGGD-RGWDSSSDVASWSAGRVFRAGDKILLAYSP-AQESIAELQSKEEYESCNV-------SNPIRMYTDGL-DVI 101 (183)
Q Consensus 32 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~h~V~ev~~k~~Y~~C~~-------s~~~~~~~~G~-~~v 101 (183)
+..+|.+ .+..+.+ ...++++||++.|.... ..|++. ... ... .+.. .........|. ..+
T Consensus 4 ~V~~~~~~~~~~f~p------~~i~v~~Gd~V~~~N~~~~~H~v~-~~~-~~~-~~~~g~~~~~~~~~~~~i~pG~~~~~ 74 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP------ANVTVHPGDTVKWVNNKLPPHNIL-FDD-KQV-PGASKELADKLSHSQLMFSPGESYEI 74 (105)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTEEEEEEECSSCCEEEE-ECT-TSS-GGGCHHHHHHHCEEEEECSTTCEEEE
T ss_pred EEEEeecCCccEEeC------CEEEEcCCCEEEEEECCCCCCeEE-EeC-CCC-CcccccccccccccccccCCCCeEEE
Confidence 5567654 4566543 34688999999998764 479988 322 111 1200 00001223343 356
Q ss_pred Ec---CCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 102 PL---DGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 102 ~L---~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
++ +++|+|+|.|. .|+..||+-.|.|.
T Consensus 75 ~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 75 TFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 66 78999999999 79999999999985
No 29
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.80 E-value=5.1e-05 Score=55.21 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=47.2
Q ss_pred CCCeEEeCCEEEEEEcCC-CCceEEecccccCCCCCCCCCc--ccccCCC-eEEEcCCccceEEEcCCCCCcCCCCeEEE
Q 030047 52 AGRVFRAGDKILLAYSPA-QESIAELQSKEEYESCNVSNPI--RMYTDGL-DVIPLDGEGIHYFVSSKYDNCKNGLKLHV 127 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~~Y~~C~~s~~~--~~~~~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I 127 (183)
+..+.++||++.|..... .|+|.-. +... ..... .....|. ..++++++|.|.|+|.. |. ||+..|
T Consensus 34 ~~i~V~~G~tV~~~N~d~~~H~v~~~-~~~~-----~~~~~~s~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I 103 (106)
T 1id2_A 34 PEVTIKAGETVYWVNGEVMPHNVAFK-KGIV-----GEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 103 (106)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEEC-TTTS-----SSSCEECCCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred CEEEECCCCEEEEEECCCCcEEEEEe-CCCC-----CcccccccccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEE
Confidence 456899999999997654 6998832 2110 00000 1223343 46788999999999997 87 999999
Q ss_pred Eec
Q 030047 128 NVL 130 (183)
Q Consensus 128 ~V~ 130 (183)
.|.
T Consensus 104 ~V~ 106 (106)
T 1id2_A 104 IVE 106 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.78 E-value=4e-05 Score=55.54 Aligned_cols=82 Identities=11% Similarity=0.019 Sum_probs=53.4
Q ss_pred ceEEEecCCCCCCCCCCCcccCCCCeEEeCCEEEEEEcCC-CCceEEeccccc----CCCCCCCCCcccccCCC-eEEEc
Q 030047 30 QVHHVVGGDRGWDSSSDVASWSAGRVFRAGDKILLAYSPA-QESIAELQSKEE----YESCNVSNPIRMYTDGL-DVIPL 103 (183)
Q Consensus 30 a~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~h~V~ev~~k~~----Y~~C~~s~~~~~~~~G~-~~v~L 103 (183)
+.+++|-- .+|.+.+ ...++++||++.|..... .|+|.-. +..+ |++. ....|. ..+++
T Consensus 18 a~~~~V~~-~~~~F~P------~~i~v~~Gd~V~~~N~d~~~H~v~~~-~~~~g~~~~~~~-------~~~pG~~~~~tf 82 (105)
T 2ov0_A 18 DGAIVVDI-AKMKYET------PELHVKVGDTVTWINREAMPHNVHFV-AGVLGEAALKGP-------MMKKEQAYSLTF 82 (105)
T ss_dssp TTCEEEEE-ETTEESS------SEEEECTTCEEEEEECSSSCBCCEEC-TTTSSSSCEECC-------CBCTTEEEEEEE
T ss_pred CcCEEEEE-eecEEcC------CEEEECCCCEEEEEECCCCCEEEEEc-CCCCCccccccc-------ccCCCCEEEEEe
Confidence 34454433 2455543 456889999999987654 7998832 2110 2211 123343 36788
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEec
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+++|.|+|.|.. |- ||+..|.|.
T Consensus 83 ~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 83 TEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp CSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 999999999997 54 999999884
No 31
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.69 E-value=0.00029 Score=53.66 Aligned_cols=89 Identities=9% Similarity=0.121 Sum_probs=53.4
Q ss_pred EEEecCCCCCCCCCCCcccCCCCeEEe---CCEEEEEEcC--C------CCceEEecccc----------------cCCC
Q 030047 32 HHVVGGDRGWDSSSDVASWSAGRVFRA---GDKILLAYSP--A------QESIAELQSKE----------------EYES 84 (183)
Q Consensus 32 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~v---GD~LvF~y~~--~------~h~V~ev~~k~----------------~Y~~ 84 (183)
+..|+.+.+..+.+ ++|.| ||++.|.+.+ . .|+++ +.+.. +|..
T Consensus 4 ~v~v~~~d~m~F~p--------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~v-i~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T 2ccw_A 4 EATVESNDAMQYNV--------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLV-LTKDADKQAVATDGMGAGLAQDYVK 74 (129)
T ss_dssp EEEEEECTTSCBSC--------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCE-EEEGGGHHHHHHHHHHHCGGGTTSC
T ss_pred EEEEEeCCCccEec--------ceEEEecCCCEEEEEEEECCCcccccCcceEE-EcCccchhhhHHHhhhhcccccccc
Confidence 55666655667654 35555 9976666654 2 39988 43433 2221
Q ss_pred CCCCCCc---ccccCCCe-EEE--cC--Cccc-eEEEcCCCCCcCCCCeEEEEec
Q 030047 85 CNVSNPI---RMYTDGLD-VIP--LD--GEGI-HYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 85 C~~s~~~---~~~~~G~~-~v~--L~--~~G~-~YFic~v~~HC~~GmKl~I~V~ 130 (183)
=+..+-+ .....|.+ .++ .+ ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 75 ~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 75 AGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 1111101 12344543 444 44 5666 999999999999 999999985
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.68 E-value=0.00014 Score=55.44 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=54.9
Q ss_pred EEEecCCCCCCCCCCCcccCCCCeE-EeCCEEEEEEcC--C------CCceEEeccccc----------------CCCCC
Q 030047 32 HHVVGGDRGWDSSSDVASWSAGRVF-RAGDKILLAYSP--A------QESIAELQSKEE----------------YESCN 86 (183)
Q Consensus 32 ~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~--~------~h~V~ev~~k~~----------------Y~~C~ 86 (183)
+..|+.+.++.+.+ +..++ +.||++.|.+.+ . .|+++ +.+..+ |..=+
T Consensus 4 ~v~v~~~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~v-i~~~~~~~~~~~~~m~~~~~~~~~~~~ 76 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLV-ISKEADMQPIATDGLSAGIDKQYLKDG 76 (128)
T ss_dssp EEEEEECTTSCBSC------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCE-EEEGGGHHHHHHHHTTTCGGGTTSCTT
T ss_pred EEEEEeCCCccEec------CEEEEecCCCEEEEEEEECCCCcccCCCceEE-EccccchhhHHHHHhhccccccccccc
Confidence 55666666677754 34456 679987777754 2 29988 433322 11101
Q ss_pred CCCCc---ccccCCCe-EEEcC----Cccc-eEEEcCCCCCcCCCCeEEEEec
Q 030047 87 VSNPI---RMYTDGLD-VIPLD----GEGI-HYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 87 ~s~~~---~~~~~G~~-~v~L~----~~G~-~YFic~v~~HC~~GmKl~I~V~ 130 (183)
..+-+ .....|.+ .++++ ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 77 DARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 01101 12344543 45443 5776 999999999999 999999884
No 33
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.68 E-value=0.00018 Score=54.77 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=53.6
Q ss_pred EEEecCCCCCCCCCCCcccCCCCeE-EeCCEEEEEEcC-C-------CCceEEecccc----------------cCCCCC
Q 030047 32 HHVVGGDRGWDSSSDVASWSAGRVF-RAGDKILLAYSP-A-------QESIAELQSKE----------------EYESCN 86 (183)
Q Consensus 32 ~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~-~-------~h~V~ev~~k~----------------~Y~~C~ 86 (183)
+..|+.+.++.+.+ +..++ +.||++.|.+.+ + .|+++ +.+.. +|..=+
T Consensus 3 ~v~v~~~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~v-i~~~~~~~~~~~~~m~~~~~~~~~~~~ 75 (128)
T 2iaa_C 3 DVSIEGNDSMQFNT------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVV-VSKKSDESAVATDGMKAGLNNDYVKAG 75 (128)
T ss_dssp EEEEEECTTSCBSC------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCE-EEETTHHHHHHHHHHHHCGGGTTSCTT
T ss_pred EEEEEeCCCceEec------CEEEEecCCcEEEEEEEECCCCcccCCCceEE-EccccchhhHHHhhhhccccccccccc
Confidence 34555555677654 22344 449977777654 2 39988 32332 232111
Q ss_pred CCCCc---ccccCCCe-EEEc--C--Cccc-eEEEcCCCCCcCCCCeEEEEec
Q 030047 87 VSNPI---RMYTDGLD-VIPL--D--GEGI-HYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 87 ~s~~~---~~~~~G~~-~v~L--~--~~G~-~YFic~v~~HC~~GmKl~I~V~ 130 (183)
..+-+ .....|.+ .+++ . ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 76 ~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 76 DERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred cchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 11101 12344543 4444 3 6885 999999999999 999999986
No 34
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.49 E-value=2.8e-05 Score=62.90 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=50.6
Q ss_pred EeCCEEEEE---EcCC------CCceEEecccccCCCCCCCC-Ccccc--c--CCCeEEEcC-------------Ccc-c
Q 030047 57 RAGDKILLA---YSPA------QESIAELQSKEEYESCNVSN-PIRMY--T--DGLDVIPLD-------------GEG-I 108 (183)
Q Consensus 57 ~vGD~LvF~---y~~~------~h~V~ev~~k~~Y~~C~~s~-~~~~~--~--~G~~~v~L~-------------~~G-~ 108 (183)
++||.|-+- |+.+ .+.+.+| ++++|++|+... +...+ + .+...+++. ++| .
T Consensus 27 ~igD~LdIiCP~~~~~~~~~~E~~~LY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 27 QIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CTTCEEEEECCCCCSSSCSCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred cCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 459999886 3321 2567765 999999998762 22222 1 223333331 366 6
Q ss_pred eEEEcCCC-----------CCcCC-CCeEEEEecCCCCCC
Q 030047 109 HYFVSSKY-----------DNCKN-GLKLHVNVLPQPHQS 136 (183)
Q Consensus 109 ~YFic~v~-----------~HC~~-GmKl~I~V~~~~~~~ 136 (183)
|||||+-. |+|.. +|||.|.|...+...
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~~ 145 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSA 145 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC----
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCCCCC
Confidence 99999853 79997 999999998765543
No 35
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.79 E-value=0.003 Score=45.59 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCCeEEeCCEEEEEEcCC---CCceEEecccccCCCCCCCCCcccccCCCe---EEEcCCccceEEEcCCCCCcCC-CCe
Q 030047 52 AGRVFRAGDKILLAYSPA---QESIAELQSKEEYESCNVSNPIRMYTDGLD---VIPLDGEGIHYFVSSKYDNCKN-GLK 124 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~---~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFic~v~~HC~~-GmK 124 (183)
+..+++.||++.|.+.+. .|++. +.+. + . ......|.+ .++.+++|.|+|.|.. ||.. +|+
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~~~H~~~-i~~~-~-----~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~ 105 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFS-IDAF-G-----V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLP 105 (112)
T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEE-EGGG-T-----E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCC
T ss_pred CEEEEeCCCEEEEEEEECCCCeEEEE-EcCC-C-----c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCE
Confidence 446899999999987642 58876 4221 1 0 112334443 3445899999999987 7753 499
Q ss_pred EEEEec
Q 030047 125 LHVNVL 130 (183)
Q Consensus 125 l~I~V~ 130 (183)
..|.|.
T Consensus 106 g~i~V~ 111 (112)
T 1iby_A 106 GTLNVV 111 (112)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999886
No 36
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.48 E-value=0.0064 Score=46.39 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=46.5
Q ss_pred CCCeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCCCCcC---CCC
Q 030047 52 AGRVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYDNCK---NGL 123 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~HC~---~Gm 123 (183)
+..++.+||.+.|...+. .|+.. +.+ .+. ......|. -.++.+++|.|+|.|+. +|- .+|
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~-ip~-~~~--------k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M 127 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFH-VEG-TNI--------NVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNM 127 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEE-ETT-SSC--------EEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTC
T ss_pred CEEEEcCCCEEEEEEEeCCccceEE-ecC-CCc--------eeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCC
Confidence 456899999999998653 47766 422 111 01123343 36889999999999986 444 689
Q ss_pred eEEEEec
Q 030047 124 KLHVNVL 130 (183)
Q Consensus 124 Kl~I~V~ 130 (183)
+..|.|.
T Consensus 128 ~g~v~V~ 134 (135)
T 2cua_A 128 FGTIVVK 134 (135)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999986
No 37
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=95.76 E-value=0.0089 Score=48.35 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=46.1
Q ss_pred CeEEeCCEEEEE---EcCC--------CCceEEecccccCCCCCCCC-Ccccc------c-CCCeEE-------------
Q 030047 54 RVFRAGDKILLA---YSPA--------QESIAELQSKEEYESCNVSN-PIRMY------T-DGLDVI------------- 101 (183)
Q Consensus 54 ~~F~vGD~LvF~---y~~~--------~h~V~ev~~k~~Y~~C~~s~-~~~~~------~-~G~~~v------------- 101 (183)
...++||.|-+- |+.+ ...+.+| ++++|++|+... +...+ . .|+.+|
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~G 128 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 128 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEE-CHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCC
Confidence 367889999875 4321 2346655 999999998753 22222 1 122222
Q ss_pred -EcCCcc-ceEEEcC----CCCCcCCCCeEEEEecCCC
Q 030047 102 -PLDGEG-IHYFVSS----KYDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 102 -~L~~~G-~~YFic~----v~~HC~~GmKl~I~V~~~~ 133 (183)
.. ++| .||||++ .+|.| |||.|.|....
T Consensus 129 lEF-~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~ 162 (182)
T 3czu_B 129 KEF-KEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI 162 (182)
T ss_dssp CCC-CTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred eeE-eCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence 22 366 5889987 45666 99999998654
No 38
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=95.65 E-value=0.0076 Score=46.89 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=47.9
Q ss_pred eEEeCCEEEEE---EcC---------CCCceEEecccccCCCCCCC-CCccccc----CCCeE--------------EEc
Q 030047 55 VFRAGDKILLA---YSP---------AQESIAELQSKEEYESCNVS-NPIRMYT----DGLDV--------------IPL 103 (183)
Q Consensus 55 ~F~vGD~LvF~---y~~---------~~h~V~ev~~k~~Y~~C~~s-~~~~~~~----~G~~~--------------v~L 103 (183)
..++||.|-+- |+. ....+.+| ++++|++|+.. ++...+. .++.+ +..
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLV-EGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEE-CSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 56678999875 332 12346655 99999999875 3333331 12222 223
Q ss_pred CCcc-ceEEEcCC-----------CCCcCC-CCeEEEEec
Q 030047 104 DGEG-IHYFVSSK-----------YDNCKN-GLKLHVNVL 130 (183)
Q Consensus 104 ~~~G-~~YFic~v-----------~~HC~~-GmKl~I~V~ 130 (183)
++| .||||++- +|-|.. .|||.|.|.
T Consensus 102 -~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 -RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp -CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred -eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 366 58899873 467987 899999986
No 39
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=95.64 E-value=0.015 Score=45.12 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=46.8
Q ss_pred CeEEeCCEEEEE---EcC-------CCCceEEecccccCCCCCCCCCc-cccc-------CCCeEEEcC-----------
Q 030047 54 RVFRAGDKILLA---YSP-------AQESIAELQSKEEYESCNVSNPI-RMYT-------DGLDVIPLD----------- 104 (183)
Q Consensus 54 ~~F~vGD~LvF~---y~~-------~~h~V~ev~~k~~Y~~C~~s~~~-~~~~-------~G~~~v~L~----------- 104 (183)
...++||.|-+- |+. ....+.+| ++++|++|+..... ..+. .|+.++++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~ 101 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 101 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEE-CHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence 357789999775 432 12346655 99999999875432 2221 133333210
Q ss_pred --Ccc-ceEEEcCC-----CCCcCCCCeEEEEecCCC
Q 030047 105 --GEG-IHYFVSSK-----YDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 105 --~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~ 133 (183)
++| .||||++- ++-| |||.|.|.+..
T Consensus 102 EF~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 102 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred eecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 267 48888762 3457 99999998653
No 40
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=95.61 E-value=0.013 Score=47.16 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=47.6
Q ss_pred CeEEeCCEEEEE---EcC-------CCCceEEecccccCCCCCCCCCc-cccc-------CCCeEEEc------------
Q 030047 54 RVFRAGDKILLA---YSP-------AQESIAELQSKEEYESCNVSNPI-RMYT-------DGLDVIPL------------ 103 (183)
Q Consensus 54 ~~F~vGD~LvF~---y~~-------~~h~V~ev~~k~~Y~~C~~s~~~-~~~~-------~G~~~v~L------------ 103 (183)
...++||.|-+- |+. ....+.+| ++++|++|+..+.. ..+. .|+.++++
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~V-s~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~ 130 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 130 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEE-CHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCc
Confidence 357789999775 432 12346655 99999999875432 2221 13333321
Q ss_pred -CCcc-ceEEEcCC-----CCCcCCCCeEEEEecCCCC
Q 030047 104 -DGEG-IHYFVSSK-----YDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 104 -~~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~~ 134 (183)
=++| .||||++- ++-| |||.|.|.+...
T Consensus 131 EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 131 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred cccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 1367 48888762 2346 999999997643
No 41
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=95.21 E-value=0.016 Score=45.00 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=47.5
Q ss_pred EEeCCEEEEEEcCC---------CCceEEecccccCCCCCCCC-Cccccc----CCCeEEEcC-------------Ccc-
Q 030047 56 FRAGDKILLAYSPA---------QESIAELQSKEEYESCNVSN-PIRMYT----DGLDVIPLD-------------GEG- 107 (183)
Q Consensus 56 F~vGD~LvF~y~~~---------~h~V~ev~~k~~Y~~C~~s~-~~~~~~----~G~~~v~L~-------------~~G- 107 (183)
.++||.|-+-=... ...+.+| ++++|++|+... +...+. .+..++++. ++|
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 35689998863321 2456655 999999998763 322221 233333222 467
Q ss_pred ceEEEcCC-----------CCCcCC-CCeEEEEecC
Q 030047 108 IHYFVSSK-----------YDNCKN-GLKLHVNVLP 131 (183)
Q Consensus 108 ~~YFic~v-----------~~HC~~-GmKl~I~V~~ 131 (183)
.||||++- +|-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 48888873 247986 8999999974
No 42
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=94.88 E-value=0.04 Score=48.52 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCCeEEeCCEEEEEEcCC---CCceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCCCCcCCCCeE
Q 030047 52 AGRVFRAGDKILLAYSPA---QESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYDNCKNGLKL 125 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~---~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~GmKl 125 (183)
...+++.||+++|++.+. .|++. +........|-. ..|. -.|+++++|+++|.|.+.+|=..||+.
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~-~~g~~~~~~~~i-------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G 126 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVV-VDQYAARSAIVN-------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEG 126 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCE-ETTTTEECCCBC-------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEE-EccCCcccceec-------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEE
Confidence 457899999999988653 38876 433222223322 2232 356778899999999999998889999
Q ss_pred EEEecCCC
Q 030047 126 HVNVLPQP 133 (183)
Q Consensus 126 ~I~V~~~~ 133 (183)
.|.|....
T Consensus 127 ~i~V~~~~ 134 (447)
T 2dv6_A 127 NIQVLPGN 134 (447)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCc
Confidence 99998654
No 43
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.74 E-value=0.33 Score=36.75 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=48.5
Q ss_pred EEecCCCCCCCCCCCcccCCCCeEEe---CCEEEEEEcC-C-------CCceEEecccc----------------cCCCC
Q 030047 33 HVVGGDRGWDSSSDVASWSAGRVFRA---GDKILLAYSP-A-------QESIAELQSKE----------------EYESC 85 (183)
Q Consensus 33 ~~VGg~~GW~~~~~Y~~Wa~~~~F~v---GD~LvF~y~~-~-------~h~V~ev~~k~----------------~Y~~C 85 (183)
..|-.+.+..+.+ ++|.| |+++.|.+.+ + .||++.. +.+ +|-.=
T Consensus 5 v~i~~~d~M~F~p--------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~-~~~~~~~~~~~~m~~~~~~~y~~~ 75 (125)
T 3fsa_A 5 VDIQGNDQMQFNT--------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLS-TAADMQGVVTDGMASGLDKDYLKP 75 (125)
T ss_dssp EEEEBCTTSCBSC--------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEE-EHHHHHHHHHHHHHHCGGGTTSCT
T ss_pred EEEEccCCcEEec--------CEEEEecCCCEEEEEEEECCcccccccCceEEEc-ccchHHHHHHHHHhcChhhccCCC
Confidence 3444444556543 35555 9999888875 4 3999843 322 23211
Q ss_pred CCCCCc---ccccCCCe-EEEcC-----CccceEEEcCCCCCcCCCCeEEEEec
Q 030047 86 NVSNPI---RMYTDGLD-VIPLD-----GEGIHYFVSSKYDNCKNGLKLHVNVL 130 (183)
Q Consensus 86 ~~s~~~---~~~~~G~~-~v~L~-----~~G~~YFic~v~~HC~~GmKl~I~V~ 130 (183)
+..+-+ .....|.+ .++++ ++|.|-|+|+ +|= |||-.|.|.
T Consensus 76 ~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 76 DDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp TCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 111111 12345553 45444 5699999999 887 999999873
No 44
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.23 E-value=0.18 Score=47.20 Aligned_cols=68 Identities=7% Similarity=0.090 Sum_probs=46.3
Q ss_pred CCeEEeCCEEEEEEcCC------CCceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCC---CCCcC
Q 030047 53 GRVFRAGDKILLAYSPA------QESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSK---YDNCK 120 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~------~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v---~~HC~ 120 (183)
..++++||++.|...+. .|++. +.+ .+. ......|. -.|+.+++|.|||.|.. ..|
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~-ip~-~gv--------~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFT-MGN-YGV--------AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEE-ETT-TTE--------EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEE-ecC-CCc--------ceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 45788999999997652 47776 422 111 01223343 36788999999999984 345
Q ss_pred CCCeEEEEecCC
Q 030047 121 NGLKLHVNVLPQ 132 (183)
Q Consensus 121 ~GmKl~I~V~~~ 132 (183)
.||+..|.|.+.
T Consensus 582 ~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 MEMRGRMLVEPK 593 (595)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 499999999854
No 45
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=92.95 E-value=0.14 Score=40.47 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=45.1
Q ss_pred eEEeCCEEEEE---EcCC--------CCceEEecccccCCCCCCCCCc-cccc-------CCCeEE--------------
Q 030047 55 VFRAGDKILLA---YSPA--------QESIAELQSKEEYESCNVSNPI-RMYT-------DGLDVI-------------- 101 (183)
Q Consensus 55 ~F~vGD~LvF~---y~~~--------~h~V~ev~~k~~Y~~C~~s~~~-~~~~-------~G~~~v-------------- 101 (183)
..++||.|-+- |+.+ ...+.+| ++++|++|+..... ..+. .|+.++
T Consensus 33 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 33 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMV-NGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EECTTCEEEEECCCCCSSCCCGGGSCCEEEEEE-CHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 57789999876 4321 1236655 99999999876522 2221 122222
Q ss_pred EcCCcc-ceEEEcCC-----CCCcCCCCeEEEEecCCC
Q 030047 102 PLDGEG-IHYFVSSK-----YDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 102 ~L~~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~ 133 (183)
.. ++| .||||++- +|-| |||.|.|....
T Consensus 112 EF-~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EF-RPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CC-CTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred ee-eCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 22 366 58899863 3456 58888888654
No 46
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=92.70 E-value=0.26 Score=39.00 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=45.1
Q ss_pred CCCeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCCcc-cccCCC---eEEEcCCccceEEEcCC-CCCcCCCCe
Q 030047 52 AGRVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNPIR-MYTDGL---DVIPLDGEGIHYFVSSK-YDNCKNGLK 124 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~~~-~~~~G~---~~v~L~~~G~~YFic~v-~~HC~~GmK 124 (183)
+...+.+|+.+.|..++. .|+.. +.+ + .++ .-..|. -.++.+++|.||+.|+. -|+--.+|+
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~-IP~---l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~ 161 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFH-VEG---T-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMF 161 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEE-ETT---S-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEE-ECC---C-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCE
Confidence 446788999999987653 46666 422 1 111 112343 36788999999999985 333334699
Q ss_pred EEEEec
Q 030047 125 LHVNVL 130 (183)
Q Consensus 125 l~I~V~ 130 (183)
..|.|.
T Consensus 162 g~V~V~ 167 (168)
T 3s8f_B 162 GTIVVK 167 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999986
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.02 E-value=0.19 Score=47.32 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCCeEEeCCEEEEEEcCC------CCceEEecccccCCCCCCCCCcc-cccCCC---eEEEcCCccceEEEcCCCCCcCC
Q 030047 52 AGRVFRAGDKILLAYSPA------QESIAELQSKEEYESCNVSNPIR-MYTDGL---DVIPLDGEGIHYFVSSKYDNCKN 121 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~------~h~V~ev~~k~~Y~~C~~s~~~~-~~~~G~---~~v~L~~~G~~YFic~v~~HC~~ 121 (183)
+..++.+||++.|...+. .|+.. +.+ +. +. ....|. ..++.+++|.|||.|+. +|-.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~-IPs---lG-------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa 624 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFV-VVN---HG-------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHA 624 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEE-ETT---TT-------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCST
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeE-ecC---CC-------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCC
Confidence 456889999999987652 57776 422 11 11 223343 35778999999999997 6665
Q ss_pred C---CeEEEEecC
Q 030047 122 G---LKLHVNVLP 131 (183)
Q Consensus 122 G---mKl~I~V~~ 131 (183)
+ |+..|.|.+
T Consensus 625 ~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 625 LHMEMVGRMMVEP 637 (638)
T ss_dssp TCTTCEEEEEEEC
T ss_pred CcccceEEEEEec
Confidence 4 999999974
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=89.95 E-value=0.24 Score=37.97 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=42.0
Q ss_pred eEEeCCEEEEE---EcCC--------CCceEEecccccCCCCCCCC-Ccccc------c-CCCeEEE-------------
Q 030047 55 VFRAGDKILLA---YSPA--------QESIAELQSKEEYESCNVSN-PIRMY------T-DGLDVIP------------- 102 (183)
Q Consensus 55 ~F~vGD~LvF~---y~~~--------~h~V~ev~~k~~Y~~C~~s~-~~~~~------~-~G~~~v~------------- 102 (183)
..++||.|-+- |+.+ ...+.. |++++|++|+..+ +...+ . .|+.+++
T Consensus 23 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~-Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 23 HVQLNDYVDIICPHYEDHSVADAAMEQYILYL-VEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EECTTCEEEEECCCCCTTSSCGGGCCCEEEEE-ECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EeCCCCeEEEECCCCCCCCCCCCCccEEEEEE-eCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 56789999774 3322 234554 5999999998764 33333 1 2333322
Q ss_pred -cCCccc-eEEEcCCCCCcCC--CCeEEEEec
Q 030047 103 -LDGEGI-HYFVSSKYDNCKN--GLKLHVNVL 130 (183)
Q Consensus 103 -L~~~G~-~YFic~v~~HC~~--GmKl~I~V~ 130 (183)
. ++|. |||||+ +.|=.. =+||.|.|.
T Consensus 102 EF-~pG~~YY~ISt-~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EF-KEGHSYYYISK-PIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CC-CTTCEEEEEEE-ESSCCCCSCCEEEEEEC
T ss_pred ee-cCCCcEEEEEc-cCCCCCCcceEEEEEEE
Confidence 2 2674 778887 222111 278888774
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=85.21 E-value=1.9 Score=36.41 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=48.5
Q ss_pred CeEEeCCEEEEEEcCC-----CCceEEecccccCCCCCCCCCcccccCCCe---EEEcCCccceEEEcCCCC----CcCC
Q 030047 54 RVFRAGDKILLAYSPA-----QESIAELQSKEEYESCNVSNPIRMYTDGLD---VIPLDGEGIHYFVSSKYD----NCKN 121 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~-----~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFic~v~~----HC~~ 121 (183)
.+++.||++++++.+. .|++.. -.. .+. +-.++......|.+ .++++.+|++||-|...+ |=..
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~-h~~-~~~--~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDF-HGA-TGA--LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEE-TTS-CSG--GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceE-CCC-CCC--CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 5788999999888763 466663 221 110 00112222334442 577889999999998754 4567
Q ss_pred CCeEEEEecCCC
Q 030047 122 GLKLHVNVLPQP 133 (183)
Q Consensus 122 GmKl~I~V~~~~ 133 (183)
||.-.+.|.+..
T Consensus 143 Gl~G~liV~~~~ 154 (336)
T 1oe1_A 143 GMSGTLMVLPRD 154 (336)
T ss_dssp TCEEEEEEECTT
T ss_pred CCeEEEEEecCc
Confidence 999999998643
No 50
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=84.70 E-value=2 Score=36.22 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=48.7
Q ss_pred CeEEeCCEEEEEEcCC-----CCceEEecccccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCCC-----CcC
Q 030047 54 RVFRAGDKILLAYSPA-----QESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKYD-----NCK 120 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~-----~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~~-----HC~ 120 (183)
.+++.||++++++.+. -|.+. +....+.+.- .+......|. -.++++++|++||-|...+ |=.
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~-~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNID-FHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCE-ETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred EEecCCCEEEEEEEECCCCcccccce-ecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 4788999999988764 36666 3221111110 1111233443 3677889999999998764 667
Q ss_pred CCCeEEEEecCC
Q 030047 121 NGLKLHVNVLPQ 132 (183)
Q Consensus 121 ~GmKl~I~V~~~ 132 (183)
.||.-.+.|.+.
T Consensus 142 ~Gl~G~~iV~~~ 153 (333)
T 1mzy_A 142 SGMAGCIMVLPR 153 (333)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEccC
Confidence 899999888754
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=78.19 E-value=3 Score=35.28 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=46.2
Q ss_pred CCeEEeCCEEEEEEcCC-----CCceEEecccccCCCCCCCCCc-ccccCCCe---EEEcCCccceEEEcCC---CCCcC
Q 030047 53 GRVFRAGDKILLAYSPA-----QESIAELQSKEEYESCNVSNPI-RMYTDGLD---VIPLDGEGIHYFVSSK---YDNCK 120 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~-----~h~V~ev~~k~~Y~~C~~s~~~-~~~~~G~~---~v~L~~~G~~YFic~v---~~HC~ 120 (183)
..+++.||++++++.+. .|++. .-.-...|. .+. .....|.. .++.+.+|++||-|.. ..|=.
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih-~HG~~~~dG----~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~ 145 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVD-FHAATGQGG----GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIA 145 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCE-ETTCCSGGG----GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHH
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeE-eCccccCCC----CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhh
Confidence 35788999999988654 35554 211111110 011 11233432 5777899999999976 24556
Q ss_pred CCCeEEEEecCC
Q 030047 121 NGLKLHVNVLPQ 132 (183)
Q Consensus 121 ~GmKl~I~V~~~ 132 (183)
.||.-.|.|.+.
T Consensus 146 ~Gl~G~~iV~~~ 157 (327)
T 1kbv_A 146 NGMYGLILVEPK 157 (327)
T ss_dssp TTCEEEEEEECT
T ss_pred cceEEEEEEecC
Confidence 799999999864
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=74.06 E-value=2.8 Score=36.59 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=46.3
Q ss_pred CCeEEeCCEEEEEEcCC-----CCceEEecccccCCCCCCCCC-cccccCCC---eEEEcCCccceEEEcC---CCCCcC
Q 030047 53 GRVFRAGDKILLAYSPA-----QESIAELQSKEEYESCNVSNP-IRMYTDGL---DVIPLDGEGIHYFVSS---KYDNCK 120 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~-----~h~V~ev~~k~~Y~~C~~s~~-~~~~~~G~---~~v~L~~~G~~YFic~---v~~HC~ 120 (183)
..+++.||++++++.+. .|++. .-.-...+. .+ ......|. -.|+.+.+|++||-|- ...|=.
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH-~HG~~~~dG----~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~ 135 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNID-LHAVTGPGG----GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIA 135 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCE-ETTCCSGGG----GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHH
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEE-ecCCcCCCC----CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHh
Confidence 35788999999988764 34444 211110110 00 01123343 2577889999999994 445667
Q ss_pred CCCeEEEEecCCC
Q 030047 121 NGLKLHVNVLPQP 133 (183)
Q Consensus 121 ~GmKl~I~V~~~~ 133 (183)
.||...+.|.+..
T Consensus 136 ~Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 136 NGMYGLILVEPKE 148 (442)
T ss_dssp TTCEEEEEEECTT
T ss_pred CccEEEEEEeCCC
Confidence 8999999888543
No 53
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=73.23 E-value=2.5 Score=38.80 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=48.1
Q ss_pred CeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCC-cccccCCCeEEEcCCccceEEEcCCCCCcCCCC-eEEEEe
Q 030047 54 RVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNP-IRMYTDGLDVIPLDGEGIHYFVSSKYDNCKNGL-KLHVNV 129 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~-~~~~~~G~~~v~L~~~G~~YFic~v~~HC~~Gm-Kl~I~V 129 (183)
...+-|-.+.|.=-.. ..-++++.+-+....|...-- ...|.-| ....|+ +|.|||..+...-|++|- |+.|+|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (491)
T 3l6w_A 413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-KMYSVE-SGDYFMTASTTELCNDNNLRIHVHV 490 (491)
T ss_pred eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-ceEecC-CCceEecCChHHHHhCCceeEEEEe
Confidence 4567788888743221 223444555566667886421 1112211 344555 999999999999999998 999998
Q ss_pred c
Q 030047 130 L 130 (183)
Q Consensus 130 ~ 130 (183)
+
T Consensus 491 ~ 491 (491)
T 3l6w_A 491 D 491 (491)
T ss_pred C
Confidence 4
No 54
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=69.73 E-value=3.2 Score=34.96 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=30.2
Q ss_pred EEEcCCccceEEEcCCCCCc-CCCCeEEEEecCCCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNC-KNGLKLHVNVLPQPH 134 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~~ 134 (183)
.|+.+.+|.|+|.|....|+ +.||.-.++|.....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 57788899999999988898 899999999986543
No 55
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=67.66 E-value=8.3 Score=32.39 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=47.9
Q ss_pred CeEEeCCEEEEEEcCC-----CCceEEecccccCCCCCCCCCcccccCCCe---EEEcCCccceEEEcCCCC----CcCC
Q 030047 54 RVFRAGDKILLAYSPA-----QESIAELQSKEEYESCNVSNPIRMYTDGLD---VIPLDGEGIHYFVSSKYD----NCKN 121 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~-----~h~V~ev~~k~~Y~~C~~s~~~~~~~~G~~---~v~L~~~G~~YFic~v~~----HC~~ 121 (183)
.+++.||++++++.+. .|++. +......+ + ..+......|.. .++++.+|++||-|...+ |=..
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~-~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNID-FHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCE-ETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcce-eCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 4778999999988764 36665 32211100 0 011212334432 677889999999998764 5668
Q ss_pred CCeEEEEecCC
Q 030047 122 GLKLHVNVLPQ 132 (183)
Q Consensus 122 GmKl~I~V~~~ 132 (183)
||.-.+.|.+.
T Consensus 149 Gl~G~~iV~~~ 159 (340)
T 2bw4_A 149 GMNGAIMVLPR 159 (340)
T ss_dssp TCEEEEEEECT
T ss_pred cCEEEEEEccC
Confidence 99988888764
No 56
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=64.13 E-value=29 Score=29.78 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCCcccc-cCCC---eEEEcCCccceEEEcCCCCCcCC---CC
Q 030047 53 GRVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNPIRMY-TDGL---DVIPLDGEGIHYFVSSKYDNCKN---GL 123 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~~~~~-~~G~---~~v~L~~~G~~YFic~v~~HC~~---Gm 123 (183)
...+.+|..+.|.-++. .|+-. +.+ + .++.. -.|. ..++.+++|.||..|+. .|-. .|
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~-IP~---l-------g~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M 218 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFF-IPR---L-------GSQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGM 218 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEE-EGG---G-------TEEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTC
T ss_pred eEEEeCCCEEEEEEEeCCccceee-ecc---c-------CcEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhc
Confidence 34678899999988763 35554 421 1 11111 1233 35788999999999985 7876 49
Q ss_pred eEEEEec
Q 030047 124 KLHVNVL 130 (183)
Q Consensus 124 Kl~I~V~ 130 (183)
++.|.|.
T Consensus 219 ~~~v~vv 225 (315)
T 1fft_B 219 KFKAIAT 225 (315)
T ss_dssp CEECCBC
T ss_pred cceEEEe
Confidence 9999888
No 57
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=59.24 E-value=22 Score=29.27 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=45.9
Q ss_pred CeEEeCCEEEEEEcCC---CCceEEeccc--ccCCCCCCCCCcccccCCC---eEEEcCCccceEEEcCCC---CCcCCC
Q 030047 54 RVFRAGDKILLAYSPA---QESIAELQSK--EEYESCNVSNPIRMYTDGL---DVIPLDGEGIHYFVSSKY---DNCKNG 122 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~---~h~V~ev~~k--~~Y~~C~~s~~~~~~~~G~---~~v~L~~~G~~YFic~v~---~HC~~G 122 (183)
.+++.||++++++.+. .|++. .-.- ...|.= ..........|. -.++.+.+|++||-|-.. .|=..|
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH-~HG~~~~~~DG~-p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIH-FHGVHRATMDGT-PGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCE-ESSCCCGGGSCC-TTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEeCCCCcccEE-eccccccccCCC-CCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 5788999999988653 23333 1010 011110 000001122333 367788999999999875 355689
Q ss_pred CeEEEEecCCC
Q 030047 123 LKLHVNVLPQP 133 (183)
Q Consensus 123 mKl~I~V~~~~ 133 (183)
|--.+.|.+..
T Consensus 146 l~G~liV~~~~ 156 (288)
T 3gdc_A 146 LYGGFIVEPKE 156 (288)
T ss_dssp CEEEEEEECSS
T ss_pred CeEEEEEeCCc
Confidence 99999888654
No 58
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=56.96 E-value=10 Score=30.86 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=41.1
Q ss_pred CeEEeCCEEEEEEcCC--CCceEEecccccCCCCCCCCCcccc-cCCC---eEEEcCCccceEEEcCCCCCcCC---CCe
Q 030047 54 RVFRAGDKILLAYSPA--QESIAELQSKEEYESCNVSNPIRMY-TDGL---DVIPLDGEGIHYFVSSKYDNCKN---GLK 124 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~--~h~V~ev~~k~~Y~~C~~s~~~~~~-~~G~---~~v~L~~~G~~YFic~v~~HC~~---GmK 124 (183)
..+.+|+.+.|.-++. .|+-. +.+ + .++.. -.|. ..+..+++|.||..|+. .|-. .|+
T Consensus 43 l~lP~g~~V~~~lTS~DViHSF~-IP~---l-------gvK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~ 109 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNSVMHSFF-IPR---L-------GSQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMK 109 (205)
T ss_dssp EEEETTSCEEEEEEESSSCEEEE-EGG---G-------TEEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCC
T ss_pred EEEeCCCEEEEEEecCCceeeEE-ecc---c-------CcEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhce
Confidence 3566788888877653 35544 321 1 11111 1233 35778999999999985 7766 499
Q ss_pred EEEEec
Q 030047 125 LHVNVL 130 (183)
Q Consensus 125 l~I~V~ 130 (183)
+.|.|.
T Consensus 110 ~~v~vv 115 (205)
T 1cyx_A 110 FKAIAT 115 (205)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999988
No 59
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=56.46 E-value=6.2 Score=33.13 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=29.4
Q ss_pred EEEcCCccceEEEcCCCCCc-CCCCeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNC-KNGLKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~ 132 (183)
.|+.+.+|.++|.|-...|+ +.||.-.++|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 56788899999999999999 9999999999864
No 60
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=54.31 E-value=10 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=25.9
Q ss_pred EEEcCCccceEEEcCCCCCcCC---CCeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKN---GLKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 132 (183)
.+..+++|.||..|+. .|-. .|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 5788999999999985 7765 49999998864
No 61
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=53.74 E-value=5.1 Score=28.20 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.5
Q ss_pred CeEEeCCEEEEE-EcCC
Q 030047 54 RVFRAGDKILLA-YSPA 69 (183)
Q Consensus 54 ~~F~vGD~LvF~-y~~~ 69 (183)
+.|++||.|+|+ |+.+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999995 6544
No 62
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=52.04 E-value=12 Score=31.29 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=25.5
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.+..+++|.||..|+. .|-.| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 5788999999999985 78775 999988875
No 63
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=51.62 E-value=11 Score=30.82 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=25.2
Q ss_pred EEEcCCccceEEEcCCCCCcCCC---CeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNG---LKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 131 (183)
.++.+++|.||..|+. .|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5778999999999985 88875 898888875
No 64
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=45.16 E-value=38 Score=30.38 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.7
Q ss_pred EEEc-CCccceEEEcCCCCCcCCCCeEEEEecCCC
Q 030047 100 VIPL-DGEGIHYFVSSKYDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 100 ~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 133 (183)
.+++ +.+|++||=|-...|=..||--.+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5774 679999999999888888999999998654
No 65
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=44.45 E-value=9.3 Score=31.57 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=28.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCCCeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 131 (183)
.+..+.+|.+.|-|-+..|=+.||.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45678899999999999999999999999863
No 66
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=42.36 E-value=3.6 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=20.4
Q ss_pred EEEcCCccceEEEcCCCCCcCCCCeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 132 (183)
.+..+.+|.++|-|-+..|-..||...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 566788999999999999999999999988753
No 67
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=41.43 E-value=42 Score=28.18 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred eEEeCCEEEEEEcCCC--------CceEEeccc--ccCCCCCCCCCcccccCCCeEEEcCCccceEEEcCCCC--CcC-C
Q 030047 55 VFRAGDKILLAYSPAQ--------ESIAELQSK--EEYESCNVSNPIRMYTDGLDVIPLDGEGIHYFVSSKYD--NCK-N 121 (183)
Q Consensus 55 ~F~vGD~LvF~y~~~~--------h~V~ev~~k--~~Y~~C~~s~~~~~~~~G~~~v~L~~~G~~YFic~v~~--HC~-~ 121 (183)
+++.||++++++.+.. |.+. +... .|--.=....++..-.+=.-.|+++.+|++||-|.... |=. .
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~-~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~ 116 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVH-QKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVR 116 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCC-CTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTS
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCC-cCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcC
Q ss_pred CCeEEEEecCCCCCC
Q 030047 122 GLKLHVNVLPQPHQS 136 (183)
Q Consensus 122 GmKl~I~V~~~~~~~ 136 (183)
||--.+.|.+..+..
T Consensus 117 Gl~G~liV~p~~~~~ 131 (339)
T 2zwn_A 117 GMWGPLIVDPKQPLP 131 (339)
T ss_dssp CCEEEEEEECSSCCT
T ss_pred CceEeEEecCCCccc
No 68
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=40.46 E-value=8.2 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=17.5
Q ss_pred CeEEeCCEEEEEEcCCCCceEEecccccCCC
Q 030047 54 RVFRAGDKILLAYSPAQESIAELQSKEEYES 84 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~ 84 (183)
+.+++||.|+|+ ++-=.++|..-..|++
T Consensus 32 ~~ikvGD~I~f~---~~~l~~~V~~v~~Y~s 59 (109)
T 2z0t_A 32 RQIKPGDIIIFE---GGKLKVKVKGIRVYSS 59 (109)
T ss_dssp GGCCTTCEEEEG---GGTEEEEEEEEEEESC
T ss_pred hcCCCCCEEEEC---CCEEEEEEEEEEccCC
Confidence 468999999992 2222444555566664
No 69
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=37.64 E-value=0.37 Score=26.66 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=14.5
Q ss_pred CCeEEeCCEEEEEEcCCCC
Q 030047 53 GRVFRAGDKILLAYSPAQE 71 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~~h 71 (183)
+|.|.|.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4789999999999987654
No 70
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=36.33 E-value=22 Score=29.76 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=28.6
Q ss_pred EEEcCCccceEEEcCCCCCc-CCCCeEEEEecCCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNC-KNGLKLHVNVLPQP 133 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~ 133 (183)
.|+.+.+|.++|.|....|| ..||.-.+.+....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 56678899999999999998 78998888887543
No 71
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=36.22 E-value=98 Score=27.75 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCeEEeCCEEEEEEcCCC---------CceEEecccccCCCCC-CC-CCcccccCCC---eEEEcCCccceEEEcCCCCC
Q 030047 53 GRVFRAGDKILLAYSPAQ---------ESIAELQSKEEYESCN-VS-NPIRMYTDGL---DVIPLDGEGIHYFVSSKYDN 118 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~~~---------h~V~ev~~k~~Y~~C~-~s-~~~~~~~~G~---~~v~L~~~G~~YFic~v~~H 118 (183)
..+++.||+|+.++.+.- |.+.+ ......|.=- .+ .+ ...|. -.++++.+|++||=|-...+
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~-~~~~~~DGv~~vtq~~---I~PG~s~tY~f~~~~~GT~wYHsH~~~q 110 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQ-RGTPWADGTASISQCA---INPGETFFYNFTVDNPGTFFYHGHLGMQ 110 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCC-TTCGGGSCCBTTTBCC---BCTTCEEEEEEECCSCEEEEEEECSTTT
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCcc-CCCcccCCCcccccCC---cCCCCeEEEEEECCCCEEEEEEECchhH
Confidence 358899999999887632 23331 1111112100 00 01 12333 36788999999999999888
Q ss_pred cCCCCeEEEEecCCC
Q 030047 119 CKNGLKLHVNVLPQP 133 (183)
Q Consensus 119 C~~GmKl~I~V~~~~ 133 (183)
=..||--.+.|....
T Consensus 111 ~~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 111 RSAGLYGSLIVDPPQ 125 (552)
T ss_dssp GGGTCEEEEEEECCT
T ss_pred HhccCeeeEEEeCCc
Confidence 888999999998764
No 72
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=35.10 E-value=91 Score=28.00 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=48.9
Q ss_pred CeEEeCCEEEEEEcCCC---------CceEEecccccCCC-CCCC-CCcccccCCC---eEEEcC-CccceEEEcCCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ---------ESIAELQSKEEYES-CNVS-NPIRMYTDGL---DVIPLD-GEGIHYFVSSKYDN 118 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~---------h~V~ev~~k~~Y~~-C~~s-~~~~~~~~G~---~~v~L~-~~G~~YFic~v~~H 118 (183)
.+++.||+|+.++.+.- |.+.+- .....|. -..+ .+| ..|. -.++++ .+|++||=|-...|
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~-~~~~~DG~~~vtq~pI---~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 111 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQN-GTASMDGVPFLTQCPI---APGSTMLYNFTVDYNVGTYWYHSHTDGQ 111 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCT-TCGGGSCCBTTTBCCB---CTTCEEEEEEECSSCCEEEEEECCSSSG
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccC-CCCcccCCCccccCCc---CCCCeEEEEEEeCccceeEEEEEcCccc
Confidence 58889999999997743 333321 1111111 0000 011 2333 367887 89999999999888
Q ss_pred cCCCCeEEEEecCCC
Q 030047 119 CKNGLKLHVNVLPQP 133 (183)
Q Consensus 119 C~~GmKl~I~V~~~~ 133 (183)
=..||.-.+.|....
T Consensus 112 ~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 112 YEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGTCEEEEEEECTT
T ss_pred ccCcceeeEEeCCCC
Confidence 888999999998764
No 73
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=32.99 E-value=26 Score=26.45 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=15.4
Q ss_pred CCCeEEeCCEEEEEEcCC
Q 030047 52 AGRVFRAGDKILLAYSPA 69 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~ 69 (183)
..+..++||.++|++...
T Consensus 113 ~dn~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 113 LENNLGEGDVCVFELLRT 130 (146)
T ss_dssp HHTTCCTTCEEEEEECSS
T ss_pred HHcCCCCCCEEEEEEecC
Confidence 457889999999999874
No 74
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=31.94 E-value=69 Score=28.96 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=47.6
Q ss_pred CeEEeCCEEEEEEcCCC---------CceEEecccccCCCC-CCC-CCcccccC-CC---eEEEcCCccceEEEcCCCCC
Q 030047 54 RVFRAGDKILLAYSPAQ---------ESIAELQSKEEYESC-NVS-NPIRMYTD-GL---DVIPLDGEGIHYFVSSKYDN 118 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~---------h~V~ev~~k~~Y~~C-~~s-~~~~~~~~-G~---~~v~L~~~G~~YFic~v~~H 118 (183)
.+++.||+|+.++.+.- |.+.+ ......|.= ..+ .++ .. |. ..++++.+|++||=|-...|
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~-~~~~~~DG~~~~tq~~I---~P~G~~~~Y~f~~~q~GT~wYH~H~~~q 144 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQ-KDTNLHDGANGVTECPI---PPKGGQRTYRWRARQYGTSWYHSHFSAQ 144 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCC-TTCGGGSCCBTTTBCCB---CTTTEEEEEEEECCSCEEEEEEECSTTG
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCcc-CCCCCcCCCCccccCcc---CCCCCeEEEEEECCCCEEEEEEEcccch
Confidence 47889999999887532 23331 111111210 000 011 22 43 36888999999999999888
Q ss_pred cCCCCeEEEEecCC
Q 030047 119 CKNGLKLHVNVLPQ 132 (183)
Q Consensus 119 C~~GmKl~I~V~~~ 132 (183)
=..||--.+.|..+
T Consensus 145 ~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 145 YGNGVVGTIQINGP 158 (559)
T ss_dssp GGGTCEEEEEEECC
T ss_pred hcCCceEEEEecCC
Confidence 88899999998864
No 75
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=30.36 E-value=9.9 Score=28.75 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=6.9
Q ss_pred eCCEEEEEEcCCCCc
Q 030047 58 AGDKILLAYSPAQES 72 (183)
Q Consensus 58 vGD~LvF~y~~~~h~ 72 (183)
.|+.+.|+=.++.++
T Consensus 77 ~gK~V~~~S~AgY~S 91 (126)
T 4dny_A 77 EGKMVRFVSSAGYSS 91 (126)
T ss_dssp TTCEEEEEEECSSCE
T ss_pred CCCEEEEEEecCccE
Confidence 344455554444433
No 76
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=30.12 E-value=25 Score=24.56 Aligned_cols=19 Identities=11% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCCeEEeCCEEEEEEcCCC
Q 030047 52 AGRVFRAGDKILLAYSPAQ 70 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~~ 70 (183)
..+..++||.|+|+|....
T Consensus 74 ~~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 74 KDNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHHTCCTTCEEEEEECSSS
T ss_pred HHcCCCCCCEEEEEEcCCC
Confidence 4567889999999998743
No 77
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=29.71 E-value=17 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=23.9
Q ss_pred EEEecCCCCCCCCCCCcccCCCCeEEeCCEEEEE
Q 030047 32 HHVVGGDRGWDSSSDVASWSAGRVFRAGDKILLA 65 (183)
Q Consensus 32 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~ 65 (183)
+.++||+.| . ...+.|-.. |..||++.++
T Consensus 41 ~~~l~DeTG-~--I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-R--IRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-E--EEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-e--EEEEEEcCc--cCCCCEEEEE
Confidence 678999988 3 456888876 9999999988
No 78
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=29.38 E-value=1.1e+02 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=28.7
Q ss_pred EEEc-CCccceEEEcCCCCCcCCCCeEEEEecCCC
Q 030047 100 VIPL-DGEGIHYFVSSKYDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 100 ~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 133 (183)
.+++ +++|++||=|-...+=..|+--.+.|..+.
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCcc
Confidence 6777 679999999998887778999999997654
No 79
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=29.18 E-value=68 Score=26.75 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred eEEeCCEEEEEEcCCC--------CceEEecccccCCCCCC--CCCcccccCCCeEEEcCCccceEEEcCCCCCc---CC
Q 030047 55 VFRAGDKILLAYSPAQ--------ESIAELQSKEEYESCNV--SNPIRMYTDGLDVIPLDGEGIHYFVSSKYDNC---KN 121 (183)
Q Consensus 55 ~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~C~~--s~~~~~~~~G~~~v~L~~~G~~YFic~v~~HC---~~ 121 (183)
+.+.||+|++++.+.. |.+. +......|.=.. ..++.-..+=.-.++.+++|++||-|.....= ..
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~-~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~ 115 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWHGML-QRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMR 115 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCC-CTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHHS
T ss_pred EEeCCCEEEEEEEeCCCCceeEEecCcC-CCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhccC
Q ss_pred CCeEEEEecCCCC
Q 030047 122 GLKLHVNVLPQPH 134 (183)
Q Consensus 122 GmKl~I~V~~~~~ 134 (183)
||.-.+.|.+..+
T Consensus 116 Gl~G~lIV~~~~~ 128 (318)
T 3g5w_A 116 GMWGPLIVEPKNP 128 (318)
T ss_dssp CCEEEEEEECSSC
T ss_pred CCEEEEEEcCCCc
No 80
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=28.71 E-value=13 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=16.3
Q ss_pred CeEEeCCEEEEEEcCCCCceEEecccccCCC
Q 030047 54 RVFRAGDKILLAYSPAQESIAELQSKEEYES 84 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~h~V~ev~~k~~Y~~ 84 (183)
+.+++||+|+|+= . =.++|..-..|++
T Consensus 33 ~~i~vGD~I~f~~---~-l~~~V~~v~~Y~s 59 (113)
T 1xne_A 33 KDIKRGDKIIFND---L-IPAEVVEVKKYET 59 (113)
T ss_dssp TTCCTTCEEEETT---T-EEEEEEEEEECSS
T ss_pred hccCCCCEEEEcc---c-eEEEEEEEEecCC
Confidence 4689999999943 1 2333444455554
No 81
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=28.67 E-value=57 Score=22.95 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=17.3
Q ss_pred CeEEeCCEEEEEEcCC---CCceEEeccccc
Q 030047 54 RVFRAGDKILLAYSPA---QESIAELQSKEE 81 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~---~h~V~ev~~k~~ 81 (183)
..+++||.+......+ ..-+++-+.+.+
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~ 36 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLL 36 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEECCCC
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeCccC
Confidence 5689999998875442 234554545443
No 82
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=28.23 E-value=32 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=29.3
Q ss_pred EEEcC---CccceEEEcCCCCCcCCCCeEEEEecCCCC
Q 030047 100 VIPLD---GEGIHYFVSSKYDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 100 ~v~L~---~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 134 (183)
.+..+ .+|.++|-|-+..|=+.||...+.|.+...
T Consensus 231 ~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 231 QIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp EEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred EEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 34454 599999999999999999999999997643
No 83
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=27.75 E-value=1.2e+02 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred EEEc-CCccceEEEcCCCCCcCCCCeEEEEecCCC
Q 030047 100 VIPL-DGEGIHYFVSSKYDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 100 ~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 133 (183)
.+++ +.+|++||=|-...+=..|+--.+.|..+.
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCc
Confidence 6777 679999999998887778999999997653
No 84
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=27.48 E-value=46 Score=28.75 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=29.0
Q ss_pred EEEcCCccceEEEcCCCCCc-CCCCeEEEEecCCCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNC-KNGLKLHVNVLPQPH 134 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~~ 134 (183)
.|+.+++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 57788899999999998887 779988888876543
No 85
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=25.83 E-value=1.6e+02 Score=26.89 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=28.8
Q ss_pred EEEcCCccceEEEcCCCCCcCCCCeEEEEecCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQ 132 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 132 (183)
.++++++|++||=|-...+=..|+--.+.|..+
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 688899999999999888888899988888854
No 86
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=25.72 E-value=32 Score=28.52 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=27.2
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEecCCCC
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 134 (183)
+.||.+.|-|-+..|=++||...++|.....
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCC
Confidence 4589999999999999999999999987644
No 87
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=25.31 E-value=53 Score=28.81 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=46.5
Q ss_pred CeEEeCCEEEEEEcCCC--------CceEEecccccCCCCCCCCCcccccCCC---eEEEcCC-ccceEEEcCC----CC
Q 030047 54 RVFRAGDKILLAYSPAQ--------ESIAELQSKEEYESCNVSNPIRMYTDGL---DVIPLDG-EGIHYFVSSK----YD 117 (183)
Q Consensus 54 ~~F~vGD~LvF~y~~~~--------h~V~ev~~k~~Y~~C~~s~~~~~~~~G~---~~v~L~~-~G~~YFic~v----~~ 117 (183)
.+++.||+|+.++.+.- |.+.+ ... .|. .+-.....|. ..++++. +|++||=|-. ..
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~-~~~--~DG----~~~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~ 124 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQV-PGP--LMG----GPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQ 124 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCC-CGG--GSC----SGGGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccC-CCC--CCC----CCcCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhh
Confidence 46889999999997643 44442 111 221 0111122333 3688886 9999999987 34
Q ss_pred CcCCCCeEEEEecCCC
Q 030047 118 NCKNGLKLHVNVLPQP 133 (183)
Q Consensus 118 HC~~GmKl~I~V~~~~ 133 (183)
|=..||--.+.|.+..
T Consensus 125 q~~~Gl~G~liV~~~~ 140 (451)
T 2uxt_A 125 QVYNGLAGMWLVEDEV 140 (451)
T ss_dssp HHHTTCEEEEEEECHH
T ss_pred hHhhcceEEEEEecCc
Confidence 5568999999988653
No 88
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=24.01 E-value=26 Score=23.83 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCCeEEeCCEEEEEEcCC
Q 030047 52 AGRVFRAGDKILLAYSPA 69 (183)
Q Consensus 52 ~~~~F~vGD~LvF~y~~~ 69 (183)
.+++|.+||.|.|--..+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 467999999999886554
No 89
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=23.78 E-value=54 Score=28.23 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=29.1
Q ss_pred EEEcCCccceEEEcCCCCCcCCCCeEEEEecCCC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLPQP 133 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 133 (183)
.|..+.+|.++|-|-...|=..||...+.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 4677889999999999999888999999997653
No 90
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=23.09 E-value=42 Score=30.79 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=28.6
Q ss_pred EEEcCCccceEEEcCCCCCcCCCCeEEEEecC
Q 030047 100 VIPLDGEGIHYFVSSKYDNCKNGLKLHVNVLP 131 (183)
Q Consensus 100 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 131 (183)
.|..+.+|.+.|-|-+..|-..||...+.|.+
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 46678899999999999999999999999964
No 91
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=23.06 E-value=1e+02 Score=25.47 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=27.1
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEecCCCC
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 134 (183)
+.||.+.|-|-+..|=+.||.-.++|.....
T Consensus 244 ~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~ 274 (313)
T 3tas_A 244 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 274 (313)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTC
T ss_pred CCCEeEEEEeCChHHHHCCCeEEEEEECCCC
Confidence 3589999999999999999999999987654
No 92
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=22.56 E-value=36 Score=28.86 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=27.4
Q ss_pred CCccceEEEcCCCCCcCCCCeEEEEecCCCC
Q 030047 104 DGEGIHYFVSSKYDNCKNGLKLHVNVLPQPH 134 (183)
Q Consensus 104 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 134 (183)
+.+|.++|-|-+..|=+.||...+.|.....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~ 309 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 309 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCC
Confidence 5799999999999999999999999986543
No 93
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.98 E-value=47 Score=23.18 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=9.7
Q ss_pred cCCCCeEEEEecCCCCC
Q 030047 119 CKNGLKLHVNVLPQPHQ 135 (183)
Q Consensus 119 C~~GmKl~I~V~~~~~~ 135 (183)
.+.|..+.+.+..+.++
T Consensus 62 i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 62 LKDGDQVVFMVSQKKST 78 (106)
T ss_dssp CCTTCEEEEECCC----
T ss_pred CCCCCEEEEEEcCCCCC
Confidence 35688888888765433
No 94
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=20.47 E-value=37 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=24.6
Q ss_pred eEEEecCCCCCCCCCCCcccC--CCCeEEeCCEEEEEE
Q 030047 31 VHHVVGGDRGWDSSSDVASWS--AGRVFRAGDKILLAY 66 (183)
Q Consensus 31 ~~~~VGg~~GW~~~~~Y~~Wa--~~~~F~vGD~LvF~y 66 (183)
...++||+.| + ..++.|. ....|..||++.++.
T Consensus 37 ~~~~l~DeTG-~--I~~t~W~~~~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 37 QVGLLGDETG-I--IKFTIWKNAELPLLEQGESYLLRS 71 (109)
T ss_dssp EEEEEECTTC-C--EEEEEEGGGCCCCCCTTCEEEEEE
T ss_pred EEEEEECCCC-e--EEEEEECcccccccCCCCEEEEEE
Confidence 3468999988 3 3468887 345899999998873
No 95
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=20.37 E-value=55 Score=32.18 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCeEEeCCEEEEEEcC-C----CCceEEecccccCCCCCCCCCcc----cccCCC---eEEEcCCccceEEEcCCCCCcC
Q 030047 53 GRVFRAGDKILLAYSP-A----QESIAELQSKEEYESCNVSNPIR----MYTDGL---DVIPLDGEGIHYFVSSKYDNCK 120 (183)
Q Consensus 53 ~~~F~vGD~LvF~y~~-~----~h~V~ev~~k~~Y~~C~~s~~~~----~~~~G~---~~v~L~~~G~~YFic~v~~HC~ 120 (183)
..+++.|+++.|+.-+ + .|++. + ....+. .+|.. ....|. -.|+.+++|.|+|.|-...|=+
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i-~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~ 345 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-F-HGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLK 345 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-E-TTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHH
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-E-cCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhh
Confidence 4689999999999965 2 34444 3 222222 12211 122333 2577888999999999999999
Q ss_pred CCCeEEEEecCCCCC
Q 030047 121 NGLKLHVNVLPQPHQ 135 (183)
Q Consensus 121 ~GmKl~I~V~~~~~~ 135 (183)
.||...++|......
T Consensus 346 ~Gm~~~~~V~~~~~~ 360 (1065)
T 2j5w_A 346 AGLQAFFQVQECNKS 360 (1065)
T ss_dssp TTCEEEEEEECSCCC
T ss_pred CCCEEEEEEecCCCc
Confidence 999999999865543
Done!