BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030048
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1T5H1|ADD_MYCVP Adenosine deaminase OS=Mycobacterium vanbaalenii (strain DSM 7251 /
PYR-1) GN=add PE=3 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 45 GNGSSSLGK-GPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLVTN 99
+G++ LG+ R++R+ F++ N + G+ A E PF R R+RF V
Sbjct: 244 ADGNAKLGRLASLLRDKRIPFEMCPSSNVQTGAVASIAEHPFDRLARLRFRVTVNT 299
>sp|B3P7K6|ZFPL1_DROER Zinc finger protein-like 1 homolog OS=Drosophila erecta GN=GG12524
PE=3 SV=1
Length = 298
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 127 GSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 169
G+T+ EQ LVC HV+H DCL R +A P CP C
Sbjct: 57 GTTL---EQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC 100
>sp|Q9VD26|ZFPL1_DROME Zinc finger protein-like 1 homolog OS=Drosophila melanogaster
GN=CG5382 PE=1 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 127 GSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 169
G+T+ EQ LVC HV+H DCL R +A P CP C
Sbjct: 57 GTTL---EQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC 100
>sp|Q298N4|ZFPL1_DROPS Zinc finger protein-like 1 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA18838 PE=3 SV=1
Length = 302
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 115 KLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 169
+ LR ++ S EQ LVC HV+H DCL R +A P CP C
Sbjct: 42 QWLRDSDYISNCNLCGTSLEQGECVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPGC 100
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 124 LGMGSTIP-------------SGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 169
LG+GS +P G A L CGH + CLE A D R CP C
Sbjct: 4 LGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTC 62
>sp|P56450|MC4R_MOUSE Melanocortin receptor 4 OS=Mus musculus GN=Mc4r PE=1 SV=3
Length = 332
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 11 LNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGNHGNGSSSLGKGPP 56
+N+ HH+ + S+ H ++R + G HGN S SLGKG P
Sbjct: 1 MNSTHHHGMYTSL----------HLWNRSSYGLHGNASESLGKGHP 36
>sp|A4TEW1|ADD_MYCGI Adenosine deaminase OS=Mycobacterium gilvum (strain PYR-GCK) GN=add
PE=3 SV=1
Length = 362
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 40 NLGNHGNGSSSLGK-GPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLVT 98
++ G LG+ R++R+ F++ N + G+ A E PF R R+RF V
Sbjct: 239 DIDMDAEGGPKLGRLAALLRDKRIPFEMCPSSNVQTGAVASIAEHPFDRLARLRFRVTVN 298
Query: 99 N 99
Sbjct: 299 T 299
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 134 EQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 173
+QH+ V C HV+H CLE + + CP+C L
Sbjct: 720 DQHSYMVTPCNHVFHTSCLENWMNYK----LQCPVCRSPL 755
>sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum
GN=LCY1 PE=1 SV=1
Length = 500
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 4 TDNSVKLLNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGN----HGNGSSSLGKGPPSRE 59
T N+++ LN HH + + S F H++ + LG G+ S+ L P +++
Sbjct: 7 TPNNLEFLNPHHGFAVKASTFRSEKHHNFGSRKFCETLGRSVCVKGSSSALLELVPETKK 66
Query: 60 ERLSFKLASH 69
E L F+L +
Sbjct: 67 ENLDFELPMY 76
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 20/70 (28%)
Query: 110 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 169
C IC ++ + K+ V VL CGH YH C +Q + CP C
Sbjct: 1957 CEICHEVFKSKN----------------VRVLKCGHKYHKGCFKQWLKGQS----ACPAC 1996
Query: 170 LGSLMQVESS 179
G + E S
Sbjct: 1997 QGRDLLTEES 2006
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 139 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172
A+ CGHV+ DC+E+R ++ + P C G+
Sbjct: 719 AIKTCGHVFCKDCVEERLTSRSRKCPNCNRSFGN 752
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 137 AVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 169
+V ++C H +HA CLEQ D CP+C
Sbjct: 270 SVLAILCNHSFHARCLEQWA------DNTCPVC 296
>sp|A4IPN3|PROB_GEOTN Glutamate 5-kinase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=proB PE=3 SV=1
Length = 374
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 84 PFSRSERIRFSSLVTNAASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC 143
PF + ++R + +A T+ + G + LL R LL G T SG+ HA+ V+
Sbjct: 257 PFPKQMQMRKQWIAYHAPVSGTITVDSGAEEALLDRGKSLLPAGVTAVSGDFHAMDVVNV 316
Query: 144 ----------GHVYHA 149
G VY+A
Sbjct: 317 INEKGVTIGRGQVYYA 332
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 24/94 (25%)
Query: 68 SHCNTEPGSHAEKREK-PFSRSERIRFSSLVTNAASPDTVK--------IVCGICQKLLR 118
SHC+TE S A K E P R R S PD + C +C +
Sbjct: 568 SHCDTEACSCANKCESSPCERKRRSYGSHNTDEDMEPDWLTWPAGTLHCTECVVCLENFE 627
Query: 119 RKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 152
L+G L CGHV+H +C+
Sbjct: 628 NGCLLMG---------------LPCGHVFHQNCI 646
>sp|Q0Z8I9|MC4R_VULVU Melanocortin receptor 4 OS=Vulpes vulpes GN=MC4R PE=3 SV=1
Length = 332
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 25 LKRSRHHYSHQYSRRNLGNHGNGSSSLGKGPP 56
L+ H H ++R G H N + SLGKG P
Sbjct: 5 LQHGMHTSLHFWNRSTYGQHSNATESLGKGYP 36
>sp|P12868|PEP5_YEAST Vacuolar membrane protein PEP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEP5 PE=1 SV=2
Length = 1029
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 138 VAVLVCGHVYHADCL--EQRTSAEDIRDPPCPLCLGSL 173
V CGH+YH CL E+ T + + CP CL L
Sbjct: 939 VVFFKCGHIYHQHCLNEEEDTLESERKLFKCPKCLVDL 976
>sp|Q24314|VPS18_DROME Vacuolar protein sorting-associated protein 18 homolog
OS=Drosophila melanogaster GN=dor PE=1 SV=3
Length = 1002
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 22/82 (26%)
Query: 73 EPGSHAEKREKPFSRSERIRFSSLVTNAASPDTVKIVCGICQKLLRRKSHLLGMGSTIPS 132
E E+ ++ + +++R SL S DT C IC+ +L K
Sbjct: 854 EMAETTEQTDRVTAELQQLRQHSLTVE--SQDT----CEICEMMLLVKPFF--------- 898
Query: 133 GEQHAVAVLVCGHVYHADCLEQ 154
+ +CGH +H+DCLE+
Sbjct: 899 -------IFICGHKFHSDCLEK 913
>sp|Q9P2F6|RHG20_HUMAN Rho GTPase-activating protein 20 OS=Homo sapiens GN=ARHGAP20 PE=1
SV=2
Length = 1191
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 59 EERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLVTNAASPDT-VKIVCGICQKLL 117
E RL + SH EPGS + P+ R+ ++ + +A SPD+ +VC I + L
Sbjct: 1130 ESRLKLCMKSHEEIEPGSQSSSGSLPWERASASSWT--LEDATSPDSGPTVVCDIEDRYL 1187
Query: 118 RR 119
+
Sbjct: 1188 TK 1189
>sp|Q6BWW6|BRE1_DEBHA E3 ubiquitin-protein ligase BRE1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BRE1 PE=3 SV=2
Length = 691
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 139 AVLVCGHVYHADCLEQRTSAEDIRDPPC 166
A+ VCGHV+ + C ++R +A R P C
Sbjct: 650 AITVCGHVFCSGCTQERLAARLRRCPTC 677
>sp|Q5A4X0|BRE1_CANAL E3 ubiquitin-protein ligase BRE1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=BRE1 PE=3 SV=1
Length = 681
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 139 AVLVCGHVYHADCLEQRTSAEDIRDPPC 166
A+ VCGHV+ + C ++R +A R P C
Sbjct: 640 AITVCGHVFCSKCTQERLAARLRRCPSC 667
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC126.07c PE=4 SV=1
Length = 571
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 138 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177
+A + CGH +H CLE + CPLC ++V+
Sbjct: 51 IAKIPCGHYFHNHCLESWCRVANT----CPLCRTEFLKVD 86
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 143 CGHVYHADCLEQRTSAEDIRDPPCPLCLGS-LMQVESSGVQE 183
CGHV+H DC++ S+ CPLC + L + G+QE
Sbjct: 159 CGHVFHVDCVDTWLSSY----VTCPLCRSNQLFSDKDLGMQE 196
>sp|O31314|FTSZ_BARBA Cell division protein FtsZ OS=Bartonella bacilliformis GN=ftsZ PE=3
SV=2
Length = 592
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 44 HGNG--SSSLGKGPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLVTNAA 101
HG G SS L +GP S +RL L EP + E KP E ++ V +
Sbjct: 489 HGQGIHSSGLEQGPRSLWQRLKQSLTYREEIEPEARLEPAVKPLQNEESHIYNKNVQKVS 548
Query: 102 SPDT 105
S D+
Sbjct: 549 SQDS 552
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 54 GPPSREERLSFKLASHCNTEPGSHAEKREKPFSR-SERIRFSSLVTNAASPDTVKIVCGI 112
G R ER+ F++ S+ E+ EKP R S+R F S+VT + ++
Sbjct: 4315 GSSKRIERVYFEIKD-------SNIEQWEKPQIRESKRAFFYSIVTEGGDKEKLEAFVNF 4367
Query: 113 CQKLLRRKSHLLGMGSTIPSG 133
C+ + +H G+ +T G
Sbjct: 4368 CEDAIFEMTHASGLMATDDGG 4388
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,546,824
Number of Sequences: 539616
Number of extensions: 2693743
Number of successful extensions: 7620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7590
Number of HSP's gapped (non-prelim): 68
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)