Query 030048
Match_columns 183
No_of_seqs 167 out of 1182
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.5 6.1E-15 2.1E-19 109.2 6.2 72 106-177 24-96 (114)
2 2ect_A Ring finger protein 126 99.5 2.4E-14 8.1E-19 99.4 4.4 56 105-179 13-68 (78)
3 1x4j_A Ring finger protein 38; 99.5 1.6E-14 5.5E-19 99.9 3.2 53 105-176 21-73 (75)
4 2ep4_A Ring finger protein 24; 99.5 3.3E-14 1.1E-18 97.8 4.4 54 105-177 13-66 (74)
5 2ecl_A Ring-box protein 2; RNF 99.5 1.5E-14 5E-19 102.6 2.1 68 102-176 10-77 (81)
6 3dpl_R Ring-box protein 1; ubi 99.5 1.9E-14 6.5E-19 107.9 2.7 70 103-176 33-102 (106)
7 2l0b_A E3 ubiquitin-protein li 99.4 5.4E-14 1.9E-18 101.3 4.4 52 105-175 38-89 (91)
8 2kiz_A E3 ubiquitin-protein li 99.4 4.9E-14 1.7E-18 95.7 3.8 54 105-177 12-65 (69)
9 2ea6_A Ring finger protein 4; 99.4 1E-13 3.5E-18 93.2 5.3 57 104-175 12-68 (69)
10 1iym_A EL5; ring-H2 finger, ub 99.4 3.4E-14 1.2E-18 92.3 2.2 50 106-174 4-54 (55)
11 2ecm_A Ring finger and CHY zin 99.4 4E-14 1.4E-18 91.9 2.3 51 106-174 4-54 (55)
12 4a0k_B E3 ubiquitin-protein li 99.4 8E-15 2.7E-19 112.2 -1.3 71 102-176 43-113 (117)
13 3ng2_A RNF4, snurf, ring finge 99.4 1.4E-13 4.8E-18 93.4 4.5 59 105-178 8-66 (71)
14 2d8t_A Dactylidin, ring finger 99.4 2.8E-13 9.7E-18 92.8 3.8 54 102-177 10-63 (71)
15 2xeu_A Ring finger protein 4; 99.4 2.8E-13 9.7E-18 89.8 3.6 57 106-177 2-58 (64)
16 2djb_A Polycomb group ring fin 99.3 7.4E-13 2.5E-17 91.0 4.4 53 105-178 13-65 (72)
17 2ecn_A Ring finger protein 141 99.3 8.1E-13 2.8E-17 89.8 3.0 52 105-179 13-64 (70)
18 1g25_A CDK-activating kinase a 99.3 1.5E-12 5.2E-17 87.6 4.3 55 106-177 2-57 (65)
19 2ecy_A TNF receptor-associated 99.3 1.4E-12 4.7E-17 88.0 3.7 52 105-177 13-64 (66)
20 1chc_A Equine herpes virus-1 r 99.3 9E-13 3.1E-17 89.0 2.4 49 106-175 4-52 (68)
21 2ysl_A Tripartite motif-contai 99.3 2.8E-12 9.5E-17 87.5 4.4 54 105-177 18-71 (73)
22 2csy_A Zinc finger protein 183 99.3 2.8E-12 9.4E-17 89.8 3.7 48 105-174 13-60 (81)
23 2ct2_A Tripartite motif protei 99.2 4.8E-12 1.6E-16 88.9 4.8 58 105-177 13-70 (88)
24 2yur_A Retinoblastoma-binding 99.2 4.7E-12 1.6E-16 87.6 3.4 53 105-177 13-66 (74)
25 1t1h_A Gspef-atpub14, armadill 99.2 7.3E-12 2.5E-16 86.7 3.4 52 105-177 6-57 (78)
26 4ayc_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 97.5 2.4 48 107-176 53-100 (138)
27 2d8s_A Cellular modulator of i 99.2 6.3E-12 2.2E-16 89.8 3.1 55 105-177 13-72 (80)
28 4ap4_A E3 ubiquitin ligase RNF 99.2 1E-11 3.6E-16 92.4 4.4 58 106-178 6-63 (133)
29 3lrq_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 92.8 1.9 53 106-178 21-73 (100)
30 2ecw_A Tripartite motif-contai 99.2 9.9E-12 3.4E-16 86.2 3.7 55 106-178 18-74 (85)
31 2egp_A Tripartite motif-contai 99.2 3.3E-12 1.1E-16 88.2 1.2 56 105-178 10-68 (79)
32 2ysj_A Tripartite motif-contai 99.2 2E-11 7E-16 81.4 3.9 46 105-169 18-63 (63)
33 2ecv_A Tripartite motif-contai 99.2 1.6E-11 5.3E-16 85.2 3.4 55 106-178 18-74 (85)
34 2y43_A E3 ubiquitin-protein li 99.1 9.4E-12 3.2E-16 90.1 1.9 51 106-177 21-71 (99)
35 2ecj_A Tripartite motif-contai 99.1 2.1E-11 7.3E-16 79.4 2.9 46 105-169 13-58 (58)
36 2ckl_A Polycomb group ring fin 99.1 2.6E-11 8.8E-16 89.2 3.5 50 106-176 14-63 (108)
37 3ztg_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 85.5 4.2 50 105-174 11-61 (92)
38 3fl2_A E3 ubiquitin-protein li 99.1 1.9E-11 6.4E-16 92.0 2.6 49 106-175 51-99 (124)
39 2ckl_B Ubiquitin ligase protei 99.1 3.6E-11 1.2E-15 94.5 3.2 50 106-175 53-102 (165)
40 4ap4_A E3 ubiquitin ligase RNF 99.1 4.7E-11 1.6E-15 88.8 3.4 57 106-177 71-127 (133)
41 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 91.4 0.1 52 103-175 11-62 (115)
42 1e4u_A Transcriptional repress 99.0 1.3E-10 4.4E-15 82.4 4.0 57 105-178 9-65 (78)
43 1jm7_A BRCA1, breast cancer ty 99.0 4.6E-11 1.6E-15 87.5 1.8 54 106-178 20-73 (112)
44 1z6u_A NP95-like ring finger p 99.0 7.2E-11 2.4E-15 92.7 2.5 50 106-176 77-126 (150)
45 1rmd_A RAG1; V(D)J recombinati 99.0 8.9E-11 3E-15 87.2 2.0 51 106-177 22-72 (116)
46 3hct_A TNF receptor-associated 99.0 1.1E-10 3.9E-15 87.2 2.6 52 105-177 16-67 (118)
47 2ct0_A Non-SMC element 1 homol 98.9 5.8E-10 2E-14 78.9 3.4 53 106-177 14-66 (74)
48 2kre_A Ubiquitin conjugation f 98.9 1.6E-09 5.5E-14 79.9 5.8 52 105-178 27-78 (100)
49 2kr4_A Ubiquitin conjugation f 98.9 6E-10 2.1E-14 79.6 2.9 51 105-177 12-62 (85)
50 1wgm_A Ubiquitin conjugation f 98.9 1.2E-09 4E-14 80.3 4.0 52 105-178 20-72 (98)
51 1jm7_B BARD1, BRCA1-associated 98.8 3.2E-10 1.1E-14 84.7 -0.1 48 106-177 21-69 (117)
52 3knv_A TNF receptor-associated 98.8 5.8E-10 2E-14 86.7 1.2 49 105-174 29-77 (141)
53 2vje_A E3 ubiquitin-protein li 98.8 9.5E-10 3.2E-14 74.6 2.1 51 103-175 4-57 (64)
54 2c2l_A CHIP, carboxy terminus 98.8 2.1E-09 7.3E-14 88.8 2.9 53 104-177 205-257 (281)
55 2yu4_A E3 SUMO-protein ligase 98.8 4.7E-09 1.6E-13 76.0 3.7 53 105-175 5-63 (94)
56 1bor_A Transcription factor PM 98.8 6.5E-10 2.2E-14 73.3 -0.8 47 106-177 5-51 (56)
57 2vje_B MDM4 protein; proto-onc 98.7 2.8E-09 9.7E-14 72.0 1.9 51 105-175 5-56 (63)
58 2y1n_A E3 ubiquitin-protein li 98.7 2.7E-09 9.1E-14 96.0 2.3 50 107-177 332-381 (389)
59 4ic3_A E3 ubiquitin-protein li 98.7 1.5E-09 5.2E-14 75.3 0.3 45 106-176 23-68 (74)
60 3hcs_A TNF receptor-associated 98.7 4.7E-09 1.6E-13 82.6 2.6 52 105-177 16-67 (170)
61 2f42_A STIP1 homology and U-bo 98.6 2.1E-08 7.1E-13 81.6 2.6 53 105-178 104-156 (179)
62 2ecg_A Baculoviral IAP repeat- 98.5 8.7E-09 3E-13 71.4 0.1 46 106-177 24-70 (75)
63 1wim_A KIAA0161 protein; ring 98.5 4.1E-08 1.4E-12 70.5 3.1 52 106-172 4-61 (94)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 2.7E-08 9.2E-13 67.3 1.8 50 106-175 5-59 (60)
65 2ea5_A Cell growth regulator w 98.5 7.7E-08 2.6E-12 66.1 2.9 49 103-177 11-60 (68)
66 2yho_A E3 ubiquitin-protein li 98.4 3.3E-08 1.1E-12 69.7 0.2 45 106-176 17-62 (79)
67 3htk_C E3 SUMO-protein ligase 98.4 1.1E-07 3.7E-12 81.9 2.7 55 104-177 178-234 (267)
68 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.4E-12 63.1 1.0 51 108-180 4-55 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 1.8E-07 6E-12 82.7 -0.5 45 106-176 294-339 (345)
70 3k1l_B Fancl; UBC, ring, RWD, 98.1 4E-07 1.4E-11 81.3 -0.5 58 106-175 307-373 (381)
71 3vk6_A E3 ubiquitin-protein li 98.0 1.6E-06 5.4E-11 64.8 1.9 49 109-177 3-51 (101)
72 3nw0_A Non-structural maintena 97.3 0.00012 4.2E-09 61.4 2.9 51 107-176 180-230 (238)
73 2lri_C Autoimmune regulator; Z 94.2 0.033 1.1E-06 37.9 3.0 53 105-175 10-62 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 92.8 0.04 1.4E-06 39.1 1.7 36 106-156 2-38 (101)
75 2ko5_A Ring finger protein Z; 91.6 0.091 3.1E-06 38.8 2.3 36 140-179 41-77 (99)
76 1fp0_A KAP-1 corepressor; PHD 91.2 0.092 3.2E-06 37.9 2.0 60 105-182 23-82 (88)
77 2k16_A Transcription initiatio 90.9 0.043 1.5E-06 37.5 -0.0 56 106-176 17-72 (75)
78 1f62_A Transcription factor WS 90.6 0.078 2.7E-06 33.6 1.0 32 141-172 19-50 (51)
79 2e6r_A Jumonji/ARID domain-con 89.2 0.066 2.3E-06 38.5 -0.2 54 104-172 13-66 (92)
80 2l5u_A Chromodomain-helicase-D 89.2 0.2 7E-06 33.1 2.2 50 105-172 9-58 (61)
81 1weo_A Cellulose synthase, cat 88.3 1 3.6E-05 32.7 5.7 55 106-174 15-69 (93)
82 1weu_A Inhibitor of growth fam 87.9 0.44 1.5E-05 34.4 3.5 31 143-175 57-88 (91)
83 2puy_A PHD finger protein 21A; 87.6 0.034 1.2E-06 36.6 -2.4 55 105-177 3-57 (60)
84 2yql_A PHD finger protein 21A; 87.5 0.053 1.8E-06 35.3 -1.5 49 105-171 7-55 (56)
85 1xwh_A Autoimmune regulator; P 86.9 0.093 3.2E-06 35.2 -0.6 55 105-177 6-60 (66)
86 1we9_A PHD finger family prote 86.4 0.058 2E-06 35.7 -1.8 54 106-173 5-59 (64)
87 2ysm_A Myeloid/lymphoid or mix 86.4 0.13 4.6E-06 37.4 -0.0 51 105-170 5-55 (111)
88 1mm2_A MI2-beta; PHD, zinc fin 84.1 0.14 4.8E-06 33.9 -0.7 52 104-173 6-57 (61)
89 1wil_A KIAA1045 protein; ring 83.0 0.87 3E-05 32.9 3.0 14 142-155 34-47 (89)
90 3o36_A Transcription intermedi 81.9 0.3 1E-05 38.5 0.2 33 142-174 21-53 (184)
91 1wep_A PHF8; structural genomi 79.9 1.1 3.7E-05 30.8 2.5 58 103-175 8-66 (79)
92 3v43_A Histone acetyltransfera 77.5 1.6 5.4E-05 31.9 2.9 55 107-170 5-62 (112)
93 2yt5_A Metal-response element- 76.9 0.2 6.7E-06 33.2 -2.0 58 105-175 4-64 (66)
94 2kwj_A Zinc finger protein DPF 75.5 0.17 5.7E-06 37.4 -2.9 36 141-176 77-112 (114)
95 3lqh_A Histone-lysine N-methyl 74.9 0.21 7.2E-06 40.2 -2.7 57 107-174 2-65 (183)
96 2ysm_A Myeloid/lymphoid or mix 74.9 0.27 9.3E-06 35.7 -1.9 36 138-173 70-105 (111)
97 3u5n_A E3 ubiquitin-protein li 74.5 0.62 2.1E-05 37.5 -0.0 33 142-174 24-56 (207)
98 3asl_A E3 ubiquitin-protein li 73.8 0.59 2E-05 31.8 -0.3 31 142-172 38-69 (70)
99 2ro1_A Transcription intermedi 73.6 0.67 2.3E-05 37.0 -0.0 34 141-174 18-51 (189)
100 1wee_A PHD finger family prote 73.4 0.59 2E-05 31.6 -0.4 55 105-174 14-68 (72)
101 1wev_A Riken cDNA 1110020M19; 71.8 0.55 1.9E-05 33.2 -0.8 36 142-177 38-77 (88)
102 3v43_A Histone acetyltransfera 71.2 0.67 2.3E-05 33.9 -0.5 31 141-171 81-111 (112)
103 2e6s_A E3 ubiquitin-protein li 69.8 0.57 1.9E-05 32.6 -1.1 30 142-171 46-76 (77)
104 3shb_A E3 ubiquitin-protein li 68.7 0.69 2.4E-05 32.2 -0.9 30 142-171 46-76 (77)
105 2l43_A N-teminal domain from h 68.1 1.7 5.8E-05 30.7 1.1 57 105-176 23-79 (88)
106 1wem_A Death associated transc 68.0 1 3.6E-05 30.6 -0.1 54 106-175 15-73 (76)
107 2kgg_A Histone demethylase jar 66.0 0.29 1E-05 31.3 -3.0 48 109-170 4-52 (52)
108 2lv9_A Histone-lysine N-methyl 64.9 1.7 5.9E-05 31.2 0.6 33 139-172 44-76 (98)
109 1wen_A Inhibitor of growth fam 62.1 1.6 5.6E-05 29.7 0.0 31 143-175 37-68 (71)
110 2ri7_A Nucleosome-remodeling f 61.9 1 3.6E-05 34.8 -1.1 52 106-172 7-59 (174)
111 2lbm_A Transcriptional regulat 59.5 7.4 0.00025 30.1 3.3 31 142-172 80-117 (142)
112 3m62_A Ubiquitin conjugation f 57.0 5.4 0.00018 39.6 2.7 52 105-178 889-941 (968)
113 2vpb_A Hpygo1, pygopus homolog 56.4 3.4 0.00012 27.6 0.8 52 106-171 7-65 (65)
114 1wew_A DNA-binding family prot 55.2 4.5 0.00015 27.6 1.3 34 142-175 37-75 (78)
115 3ask_A E3 ubiquitin-protein li 54.7 1.8 6.3E-05 36.0 -0.9 30 142-171 194-224 (226)
116 2vnf_A ING 4, P29ING4, inhibit 54.2 1.4 4.7E-05 29.0 -1.5 27 143-171 31-58 (60)
117 4gne_A Histone-lysine N-methyl 53.7 4.7 0.00016 29.7 1.3 27 142-170 34-60 (107)
118 2xb1_A Pygopus homolog 2, B-ce 53.1 0.42 1.4E-05 35.0 -4.5 54 108-175 4-64 (105)
119 1zfo_A LAsp-1; LIM domain, zin 52.0 2.2 7.5E-05 24.4 -0.6 28 108-152 4-31 (31)
120 2ku3_A Bromodomain-containing 51.0 7.2 0.00025 26.4 1.8 54 104-172 13-66 (71)
121 3ql9_A Transcriptional regulat 49.4 12 0.0004 28.5 3.0 31 142-172 74-111 (129)
122 3c6w_A P28ING5, inhibitor of g 49.3 1.9 6.5E-05 28.3 -1.4 27 143-171 30-57 (59)
123 3mjh_B Early endosome antigen 48.2 3.8 0.00013 24.4 0.0 15 106-120 4-18 (34)
124 1x62_A C-terminal LIM domain p 45.2 5.4 0.00019 26.5 0.4 29 106-152 14-42 (79)
125 2g6q_A Inhibitor of growth pro 45.0 2.4 8.3E-05 28.1 -1.4 28 143-172 32-60 (62)
126 3o70_A PHD finger protein 13; 43.9 3.1 0.00011 28.0 -1.0 50 106-172 18-67 (68)
127 3i2d_A E3 SUMO-protein ligase 41.4 18 0.0006 32.2 3.2 38 137-176 262-301 (371)
128 2cs3_A Protein C14ORF4, MY039 39.5 20 0.0007 25.6 2.7 41 103-157 11-51 (93)
129 2gmg_A Hypothetical protein PF 38.5 16 0.00055 27.0 2.1 28 140-176 70-97 (105)
130 3mpx_A FYVE, rhogef and PH dom 38.0 6.8 0.00023 33.9 0.0 57 104-174 372-431 (434)
131 2jmi_A Protein YNG1, ING1 homo 37.2 2.7 9.4E-05 30.1 -2.2 28 145-174 50-78 (90)
132 2cu8_A Cysteine-rich protein 2 36.7 7.1 0.00024 25.6 -0.1 40 106-174 8-47 (76)
133 2dj7_A Actin-binding LIM prote 36.6 6.9 0.00023 26.3 -0.2 40 106-174 14-53 (80)
134 4fo9_A E3 SUMO-protein ligase 36.1 23 0.0008 31.2 3.2 38 137-176 228-267 (360)
135 1x4i_A Inhibitor of growth pro 34.4 7.3 0.00025 26.3 -0.3 28 145-174 30-57 (70)
136 1z2q_A LM5-1; membrane protein 33.3 12 0.0004 25.8 0.6 60 104-177 18-81 (84)
137 1y02_A CARP2, FYVE-ring finger 32.3 9.7 0.00033 28.5 0.1 53 102-172 14-66 (120)
138 2yw8_A RUN and FYVE domain-con 31.2 13 0.00045 25.5 0.6 59 104-176 16-76 (82)
139 2co8_A NEDD9 interacting prote 31.1 12 0.00041 25.1 0.4 30 106-152 14-43 (82)
140 2i50_A Ubiquitin carboxyl-term 30.8 13 0.00045 27.8 0.6 33 140-172 4-37 (126)
141 1joc_A EEA1, early endosomal a 29.2 11 0.00039 28.0 -0.1 39 105-157 67-105 (125)
142 3t7l_A Zinc finger FYVE domain 27.4 20 0.00068 25.0 1.0 55 105-173 18-74 (90)
143 1x4u_A Zinc finger, FYVE domai 27.4 13 0.00044 25.6 -0.0 41 103-157 10-50 (84)
144 3f6q_B LIM and senescent cell 26.2 17 0.00058 23.0 0.4 42 106-175 10-51 (72)
145 2d8y_A Eplin protein; LIM doma 26.1 22 0.00076 24.0 1.0 13 107-119 15-27 (91)
146 2dar_A PDZ and LIM domain prot 25.8 8.9 0.0003 26.1 -1.1 39 106-174 24-62 (90)
147 2xqn_T Testin, TESS; metal-bin 25.4 38 0.0013 24.0 2.2 47 106-175 29-75 (126)
148 1wfk_A Zinc finger, FYVE domai 24.1 19 0.00066 25.1 0.4 55 106-174 8-65 (88)
149 2jne_A Hypothetical protein YF 23.2 2.4 8.3E-05 31.2 -4.6 46 107-179 32-77 (101)
150 3pwf_A Rubrerythrin; non heme 22.6 29 0.001 27.0 1.2 22 140-172 141-162 (170)
151 2jvx_A NF-kappa-B essential mo 22.3 21 0.00073 20.2 0.3 11 163-173 3-13 (28)
152 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.0 1E+02 0.0034 21.5 4.0 33 142-174 7-46 (140)
153 1iml_A CRIP, cysteine rich int 21.1 13 0.00045 24.2 -1.0 11 109-119 2-12 (76)
154 3kqi_A GRC5, PHD finger protei 20.9 13 0.00044 25.0 -1.0 38 138-175 26-64 (75)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.54 E-value=6.1e-15 Score=109.22 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=48.8
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCC-CCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~-~~~p~CPiCr~~l~~~~ 177 (183)
....|+||++.|.+.................++.+++|||+||.+||.+|+.... .....||+||..+..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3468999999998754221001111112223566899999999999999995322 25679999999997664
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2.4e-14 Score=99.43 Aligned_cols=56 Identities=23% Similarity=0.593 Sum_probs=46.3
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 179 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~~ 179 (183)
.+...|+||++.|.... .+.+|+|||+||..||.+|+. ....||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE---------------SVRQLPCNHLFHDSCIVPWLE----QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTS---------------CEEECTTSCEEETTTTHHHHT----TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCC---------------CEEEeCCCCeecHHHHHHHHH----cCCcCcCcCCccCCcccC
Confidence 45678999999987643 356789999999999999997 357999999998876643
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=99.93 Aligned_cols=53 Identities=25% Similarity=0.641 Sum_probs=44.6
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
.+...|+||++.|.... .+.+|+|||+||..||.+|+.. +..||+||..+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ---------------LLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTC---------------EEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCC---------------eEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCCC
Confidence 45678999999987653 4578999999999999999984 57899999998764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=97.78 Aligned_cols=54 Identities=22% Similarity=0.663 Sum_probs=44.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.....|+||++.|.... .+.+|+|||+||..||.+|+.. ...||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD---------------ELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSS---------------CEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCC---------------cEEEcCCCCEecHHHHHHHHHc----CCcCCCcCccccccc
Confidence 35678999999987643 3567899999999999999984 568999999986644
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=102.57 Aligned_cols=68 Identities=22% Similarity=0.373 Sum_probs=46.3
Q ss_pred CCCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 102 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 102 Sp~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+.+.+.+.|+||++.|.+..+-. ...... +..++.+++|||+||.+||++|+. .+.+||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~C~iC--~~~~~~-~~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 10 SWDVECDTCAICRVQVMDACLRC--QAENKQ-EDCVVVWGECNHSFHNCCMSLWVK----QNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCCCSCBTTTTBCTTSCCTTH--HHHTCT-TTCCEEEETTSCEEEHHHHHHHTT----TCCBCTTTCCBCCEE
T ss_pred eecCCCCCCcccChhhhccCccc--ccccCC-CceEEEeCCCCCccChHHHHHHHH----hCCCCCCcCCCcchh
Confidence 34557788999999997642110 000011 122344556999999999999998 357999999998654
No 6
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=1.9e-14 Score=107.92 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
.+.+.++|+||++.|.+..+..........++...+++++|||+||.+||.+|+. .+.+||+||..+..+
T Consensus 33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNREWEFQ 102 (106)
T ss_dssp ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT----TCSBCSSSCSBCCEE
T ss_pred cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH----cCCcCcCCCCcceee
Confidence 3456788999999998754311000001122334567899999999999999998 478999999997543
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.44 E-value=5.4e-14 Score=101.33 Aligned_cols=52 Identities=21% Similarity=0.542 Sum_probs=43.6
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
.+...|+||++.|.... .+.+|+|||+||..||.+|+. ....||+||..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~---------------~~~~l~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD---------------VATELPCHHYFHKPCVSIWLQ----KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTC---------------EEEEETTTEEEEHHHHHHHHT----TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCC---------------cEEecCCCChHHHHHHHHHHH----cCCcCcCcCccCCC
Confidence 35678999999988653 356799999999999999998 46799999998865
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=4.9e-14 Score=95.69 Aligned_cols=54 Identities=26% Similarity=0.585 Sum_probs=43.9
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.....|+||++.|.... .+.+++|||+||..||.+|+.. ...||+||..+...-
T Consensus 12 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE---------------DVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSS---------------CEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCC---------------cEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCcC
Confidence 35678999999987542 3567999999999999999984 568999999986543
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=93.21 Aligned_cols=57 Identities=21% Similarity=0.539 Sum_probs=44.9
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
..+...|+||++.|.+... ....+.+++|||+||..||.+|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTT-----------TTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCcccccccc-----------ccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 3467789999999986521 0123467999999999999999984 6799999998764
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.43 E-value=3.4e-14 Score=92.35 Aligned_cols=50 Identities=28% Similarity=0.714 Sum_probs=40.9
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~-CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
+...|+||++.|.... .+.+++ |||+||..||.+|+. ....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGE---------------EARFLPRCGHGFHAECVDMWLG----SHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTS---------------CCEECSSSCCEECTTHHHHTTT----TCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCC---------------ceEECCCCCCcccHHHHHHHHH----cCCcCcCCCCEeE
Confidence 4567999999988653 235676 999999999999998 4678999998864
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=4e-14 Score=91.87 Aligned_cols=51 Identities=31% Similarity=0.628 Sum_probs=42.0
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
+...|+||++.|.+.. ..+.+++|||+||.+||.+|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~--------------~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR--------------VVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTT--------------SCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCC--------------cCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 5678999999986532 13578999999999999999984 488999998864
No 12
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.42 E-value=8e-15 Score=112.19 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=3.5
Q ss_pred CCCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 102 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 102 Sp~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+.+...+.|+||++.|.+..............+...++.++|+|+||.+||.+|+. .+.+||+||..+..+
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~----~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNREWEFQ 113 (117)
T ss_dssp EECCCC---------------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH----cCCcCCCCCCeeeee
Confidence 44567789999999998754322000001123334566789999999999999998 477999999987544
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.41 E-value=1.4e-13 Score=93.39 Aligned_cols=59 Identities=20% Similarity=0.506 Sum_probs=46.6
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+...|+||++.|.+... ....+.+++|||+||..||.+|+.. ...||+||..+..++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHT-----------TTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhcccc-----------ccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChhhe
Confidence 456789999999987410 0124568999999999999999984 5799999999887654
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-13 Score=92.82 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=43.8
Q ss_pred CCCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 102 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 102 Sp~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+..+...|+||++.+.+. .+++|||+||..||.+|+. ....||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHP------------------VSLPCKHVFCYLCVKGASW----LGKRCALCRQEIPEDF 63 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSE------------------EEETTTEEEEHHHHHHCTT----CSSBCSSSCCBCCHHH
T ss_pred ccCCCCCCCccCCcccCCC------------------EEccCCCHHHHHHHHHHHH----CCCcCcCcCchhCHhh
Confidence 3445678899999987642 4679999999999999998 3589999999986543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=89.80 Aligned_cols=57 Identities=21% Similarity=0.538 Sum_probs=44.8
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.+.+... ....+.+++|||+||.+||.+|+.. +..||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHH-----------TTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccc-----------cCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCccc
Confidence 45679999999986420 0013467899999999999999984 679999999987655
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.4e-13 Score=90.97 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=43.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+...|+||++.|.+. +.+++|||+||..||.+|+.. ...||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA-----------------TTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC-----------------EECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc-----------------CEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCcccc
Confidence 3567899999988752 334599999999999999984 6789999999887664
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.1e-13 Score=89.83 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=43.5
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 179 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~~ 179 (183)
.+...|+||++.+.+ .+++|||+||..||.+|+. ....||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~-------------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-------------------LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS-------------------EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC-------------------cccCCCCcccHHHHHHHHH----CcCcCCCcCCcccCCCcc
Confidence 456789999988653 4689999999999999998 478999999998876643
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.5e-12 Score=87.59 Aligned_cols=55 Identities=25% Similarity=0.452 Sum_probs=43.2
Q ss_pred Cccccccccc-chhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQK-LLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e-~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
++..|+||++ .|.+... .+.+++|||+||..||++|+.. ....||+|++.+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSL--------------KLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSC--------------CEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCcc--------------CeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCcccccc
Confidence 4568999999 7765421 2356899999999999999873 3578999999987655
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=88.03 Aligned_cols=52 Identities=25% Similarity=0.566 Sum_probs=42.5
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.+.+. .+++|||+||..||.+|+.. ....||+|+..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP------------------KQTECGHRFCESCMAALLSS---SSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC------------------CCCSSSCCCCHHHHHHHHTT---SSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe------------------eECCCCCHHHHHHHHHHHHh---CcCCCCCCCcCCChhh
Confidence 4567899999998742 24799999999999999962 4678999999987654
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.28 E-value=9e-13 Score=88.98 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=40.9
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
....|+||++.+.+. +.+++|||+||..||.+|+.. ...||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~-----------------~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY-----------------SMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC-----------------EEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC-----------------cEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 456799999987642 367999999999999999983 5799999998764
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=87.50 Aligned_cols=54 Identities=26% Similarity=0.629 Sum_probs=43.2
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.|.+. .+++|||+||..||.+|+.. ......||+||..+...+
T Consensus 18 ~~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP------------------VTIDCGHNFCLKCITQIGET-SCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE------------------EECTTCCEEEHHHHHHHCSS-SCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe------------------EEcCCCChhhHHHHHHHHHc-CCCCCCCCCCCCcCCccc
Confidence 3567899999988742 46799999999999999962 124678999999987654
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-12 Score=89.78 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=40.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.....|+||++.|.+. .+++|||+||..||.+|+.. ...||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP------------------VVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE------------------EECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe------------------eEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 3556899999998642 46899999999999999983 678999999975
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.8e-12 Score=88.88 Aligned_cols=58 Identities=24% Similarity=0.517 Sum_probs=45.1
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.|.+... ...+++|||+||..||.+|+... .....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQL--------------RPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSS--------------CEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCC--------------CeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCcccchh
Confidence 356789999999886431 23678999999999999999842 13478999999987654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=87.62 Aligned_cols=53 Identities=21% Similarity=0.644 Sum_probs=42.3
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~-CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.|.+. .+++ |||+||..||.+|+... ....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA------------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC------------------EECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC------------------eEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCCcc
Confidence 4567899999998752 4588 99999999999999842 2468999999865544
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.20 E-value=7.3e-12 Score=86.73 Aligned_cols=52 Identities=17% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.|.+. .+++|||+|+..||.+|+.. ....||+|+..+...+
T Consensus 6 ~~~~~C~IC~~~~~~P------------------v~~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP------------------VIVSTGQTYERSSIQKWLDA---GHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSSE------------------EEETTTEEEEHHHHHHHHTT---TCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccCC------------------EEcCCCCeecHHHHHHHHHH---CcCCCCCCcCCCChhh
Confidence 3567899999998752 45799999999999999973 3678999999987654
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=4.4e-12 Score=97.53 Aligned_cols=48 Identities=23% Similarity=0.656 Sum_probs=40.0
Q ss_pred cccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 107 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 107 ~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
...|+||++.|.+. ++++|||.||..||.+|+. ....||+||..+...
T Consensus 53 ~~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA------------------VTLNCAHSFCSYCINEWMK----RKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE------------------EEETTSCEEEHHHHHHHTT----TCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc------------------eECCCCCCccHHHHHHHHH----cCCcCCCCCCcCCCC
Confidence 34699999998642 4689999999999999998 467899999988543
No 27
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=6.3e-12 Score=89.78 Aligned_cols=55 Identities=24% Similarity=0.473 Sum_probs=43.3
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCC-----hHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-----HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CG-----HvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|.||++++.+.. . .++||+ |.||.+||++|+... .+..||+|+..|..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES---------------P-LITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSS---------------C-EECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCC---------------e-eEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCeeecCc
Confidence 35678999999886543 1 368996 999999999999852 3468999999987654
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=1e-11 Score=92.40 Aligned_cols=58 Identities=21% Similarity=0.510 Sum_probs=45.1
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
+...|+||++.|.+.-. +...+++++|||+||..||.+|+. ....||+|++.+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHH-----------TTCCEEEETTCCEEEHHHHHHHHT----TCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccc-----------cccCeEecCCCChhhHHHHHHHHH----hCCCCCCCCCcCccccc
Confidence 56789999999986410 001346789999999999999998 35699999999876553
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.19 E-value=4.2e-12 Score=92.82 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=42.9
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
+...|+||++.|.+ ++.+++|||+||..||.+|+.. ....||+||..+...+.
T Consensus 21 ~~~~C~IC~~~~~~-----------------p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-----------------ARLCPHCSKLCCFSCIRRWLTE---QRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHHHH---TCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccC-----------------ccccCCCCChhhHHHHHHHHHH---CcCCCCCCCCcCCHHHh
Confidence 45689999999874 2334899999999999999985 23789999999876543
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=9.9e-12 Score=86.20 Aligned_cols=55 Identities=20% Similarity=0.467 Sum_probs=43.6
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcC--CCCCCCCcccccccccCCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~--~~~~p~CPiCr~~l~~~~~ 178 (183)
+...|+||++.|.+. .+++|||+||..||.+|+... ......||+|+..+...+.
T Consensus 18 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLKEP------------------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCSSC------------------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred cCCCCcCCChhhCcc------------------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 466899999988642 368999999999999999742 1236789999999876543
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.19 E-value=3.3e-12 Score=88.21 Aligned_cols=56 Identities=25% Similarity=0.471 Sum_probs=43.8
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCC---CCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED---IRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~---~~~p~CPiCr~~l~~~~~ 178 (183)
.+...|+||++.|.+. .+++|||+||..||.+|+.... .....||+||..+...+.
T Consensus 10 ~~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLTEP------------------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECSSC------------------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccCCe------------------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 3567899999998642 3479999999999999997421 236789999999876544
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=81.38 Aligned_cols=46 Identities=28% Similarity=0.750 Sum_probs=36.9
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 169 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiC 169 (183)
.+...|+||++.|.+. .+++|||+||..||.+|+.. ......||+|
T Consensus 18 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP------------------VTIDCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC------------------EECTTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe------------------EEeCCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 3567899999988742 46799999999999999974 1245689998
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=85.18 Aligned_cols=55 Identities=29% Similarity=0.640 Sum_probs=43.3
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcC--CCCCCCCcccccccccCCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~--~~~~p~CPiCr~~l~~~~~ 178 (183)
+...|+||++.+.+. .+++|||+||..||.+|+... ......||+|+..+...+.
T Consensus 18 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLTQP------------------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCSSC------------------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccCCc------------------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 567899999998642 357999999999999998731 1236789999999887654
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.14 E-value=9.4e-12 Score=90.11 Aligned_cols=51 Identities=24% Similarity=0.583 Sum_probs=41.2
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.|.+. +.+++|||.||..||.+|+. ....||+|+..+...+
T Consensus 21 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-----------------MIIPQCSHNYCSLCIRKFLS----YKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHT----TCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCc-----------------CEECCCCCHhhHHHHHHHHH----CCCCCCCCCCcCChhh
Confidence 456899999998752 23349999999999999998 3679999999987643
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=79.43 Aligned_cols=46 Identities=30% Similarity=0.834 Sum_probs=36.6
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 169 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiC 169 (183)
.+...|+||++.+.+. .+++|||+||..||.+|+... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP------------------VIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC------------------CCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred ccCCCCccCCcccCcc------------------EeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 3567899999998752 358999999999999997631 246789998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12 E-value=2.6e-11 Score=89.20 Aligned_cols=50 Identities=18% Similarity=0.548 Sum_probs=41.4
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+...|+||++.|.+ ++.+++|||+||..||.+|+.. ...||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-----------------ATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS-----------------EEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC-----------------cCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 56689999999874 2344599999999999999983 58999999998764
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=85.47 Aligned_cols=50 Identities=22% Similarity=0.675 Sum_probs=40.8
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~-CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.+...|+||++.|.+. .+++ |||.|+..||.+|+... ....||+|+..+.
T Consensus 11 ~~~~~C~IC~~~~~~p------------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA------------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC------------------EECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc------------------eECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCcCC
Confidence 3567899999998742 4688 99999999999999742 3478999999973
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=91.97 Aligned_cols=49 Identities=33% Similarity=0.569 Sum_probs=41.0
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
+...|+||++.|.+. .+++|||.||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP------------------ITTVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc------------------EEeeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence 456799999998742 45799999999999999983 45689999999876
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=3.6e-11 Score=94.53 Aligned_cols=50 Identities=26% Similarity=0.681 Sum_probs=41.1
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
+...|+||++.|.+ ++.+++|||+||..||.+|+.. ....||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN-----------------TMTTKECLHRFCADCIITALRS---GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS-----------------EEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC-----------------cCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcCCC
Confidence 45689999999875 2345699999999999999983 36789999999854
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=4.7e-11 Score=88.83 Aligned_cols=57 Identities=21% Similarity=0.504 Sum_probs=44.9
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.|.+.... ...+..++|||+||..||++|+.. ...||+||..+..++
T Consensus 71 ~~~~C~iC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHT-----------TCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCcccccccc-----------CcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChhc
Confidence 566799999999864210 113467899999999999999983 679999999987765
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=1.4e-11 Score=91.42 Aligned_cols=52 Identities=25% Similarity=0.641 Sum_probs=42.3
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
+..+...|+||++.|.+. .+++|||+||..||.+|+.. ....||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP------------------VTLPCNHTLCKPCFQSTVEK---ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC------------------EECTTSCEECHHHHCCCCCT---TTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCce------------------eEcCCCCHHhHHHHHHHHhH---CcCCCCCCCcccCc
Confidence 344567899999988742 46799999999999999973 46789999998753
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.04 E-value=1.3e-10 Score=82.43 Aligned_cols=57 Identities=16% Similarity=0.326 Sum_probs=43.0
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+..+|+||+++++..+. .+.-++|||.|+..||.+++.. ....||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~--------------~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI--------------NFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT--------------TCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc--------------cccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCCCch
Confidence 456789999998864432 1112359999999999999863 46789999999987654
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.6e-11 Score=87.47 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=42.0
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
+...|+||++.+.+. .+++|||+||..||.+|+... .....||+|+..+...+.
T Consensus 20 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEP------------------VSTKCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSC------------------CBCTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCe------------------EECCCCCHHHHHHHHHHHHhC-CCCCCCcCCCCcCCHhhc
Confidence 345799999988642 347999999999999999842 123689999999877654
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.02 E-value=7.2e-11 Score=92.68 Aligned_cols=50 Identities=30% Similarity=0.526 Sum_probs=41.8
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+...|+||++.|.+. .+++|||.||..||.+|+.. ....||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP------------------VTTECFHNVCKDCLQRSFKA---QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC------------------EEcCCCCchhHHHHHHHHHh---CCCcCCCCCccCCCC
Confidence 456899999988752 45899999999999999984 456899999998876
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.00 E-value=8.9e-11 Score=87.17 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=42.0
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.+.+. .+++|||+||..||.+|+.. ....||+|+..+...+
T Consensus 22 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP------------------VETSCKHLFCRICILRCLKV---MGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH---TCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc------------------EEcCCCCcccHHHHHHHHhH---CcCcCCCCCCCCCHhh
Confidence 456899999998742 35899999999999999984 3578999999987654
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.00 E-value=1.1e-10 Score=87.24 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=42.2
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.+.+. .+++|||+||..||.+|+.. ....||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRD---AGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH---HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe------------------EECCcCChhhHHHHHHHHhh---CCCCCCCCCCCcCHHh
Confidence 4567899999988742 45799999999999999984 2348999999987643
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=5.8e-10 Score=78.93 Aligned_cols=53 Identities=25% Similarity=0.541 Sum_probs=40.9
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
....|+||.+.+.... .-..|+|.||.+||.+|+.. ..+..||+|+..+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-----------------~C~~C~h~fH~~Ci~kWl~~--~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-----------------SCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSE-----------------ECSSSCCEECHHHHHHHSTT--CSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCC-----------------ccCCCCchhhHHHHHHHHHh--cCCCCCCCCcCcCCCCC
Confidence 4567999999987432 22389999999999999973 23378999999876443
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.91 E-value=1.6e-09 Score=79.90 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=43.9
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+...|+||++.|.+. ++++|||+|...||++|+. .+..||+|+..+...+.
T Consensus 27 p~~~~CpI~~~~m~dP------------------V~~~cGhtf~r~~I~~~l~----~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP------------------VRLPSGTIMDRSIILRHLL----NSPTDPFNRQTLTESML 78 (100)
T ss_dssp STTTBCTTTCSBCSSE------------------EEETTTEEEEHHHHHHHTT----SCSBCSSSCCBCCTTSS
T ss_pred cHhhCCcCccCcccCC------------------eECCCCCEEchHHHHHHHH----cCCCCCCCCCCCChhhc
Confidence 4678899999998863 4688999999999999998 36899999999876543
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.89 E-value=6e-10 Score=79.57 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=43.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.|++. ++++|||+|...||++|+.. +..||+|+..+...+
T Consensus 12 p~~~~CpI~~~~m~dP------------------V~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP------------------VRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGGG
T ss_pred chheECcccCchhcCC------------------eECCCCCEECHHHHHHHHhc----CCCCCCCcCCCChHh
Confidence 4678899999998863 46899999999999999983 679999999987654
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.87 E-value=1.2e-09 Score=80.34 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=44.0
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCC-hHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+...|+||++.|++. ++++|| |+|...||++|+.. +..||+|+..+...+.
T Consensus 20 p~~~~CpI~~~~m~dP------------------V~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP------------------VVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSSE------------------EECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccCC------------------eECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChhhc
Confidence 3677899999998863 468999 99999999999983 6799999999876543
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=3.2e-10 Score=84.67 Aligned_cols=48 Identities=23% Similarity=0.675 Sum_probs=39.5
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL-~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.|.+. .++ +|||+|+..||..|+. ..||+|+..+...+
T Consensus 21 ~~~~C~IC~~~~~~p------------------v~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILREP------------------VCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSSC------------------BCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhCc------------------cEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcccc
Confidence 456799999998742 345 9999999999999986 57999999986544
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=5.8e-10 Score=86.73 Aligned_cols=49 Identities=31% Similarity=0.652 Sum_probs=40.3
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.+...|+||++.|.+. ..++|||+|+..||.+|+.. ....||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~~p------------------v~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP------------------FQAQCGHRYCSFCLASILSS---GPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHGGG---SCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc------------------EECCCCCccCHHHHHHHHhc---CCCCCCCCCCccc
Confidence 3567899999998753 35799999999999999974 3468999999754
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.83 E-value=9.5e-10 Score=74.63 Aligned_cols=51 Identities=25% Similarity=0.557 Sum_probs=39.7
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEc--CCChH-hhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL--VCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL--~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
|..+...|.||++...+ ++++ +|||+ |..+|+.+|.. .+..||+||..+..
T Consensus 4 ~~~~~~~C~IC~~~~~~------------------~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKN------------------GCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSCSC------------------EEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCCCC------------------EEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchhc
Confidence 34567789999887553 2344 99999 89999999997 36789999998753
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=2.1e-09 Score=88.78 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=43.4
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
..+...|+||++.+.+. ++++|||+|+..||.+|+.. ...+||+|+.++...+
T Consensus 205 ~~~~~~c~i~~~~~~dP------------------v~~~~gh~f~~~~i~~~~~~---~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP------------------CITPSGITYDRKDIEEHLQR---VGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSE------------------EECSSCCEEETTHHHHHHHH---TCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCC------------------eECCCCCEECHHHHHHHHHH---CCCCCcCCCCCCchhc
Confidence 34677899999998863 46899999999999999985 2445999999987654
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=4.7e-09 Score=76.00 Aligned_cols=53 Identities=19% Similarity=0.516 Sum_probs=40.6
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHhhcC--CCCCCCCcc--cccc-ccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAE--DIRDPPCPL--CLGS-LMQ 175 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~-CGHvFH~~CLe~wl~~~--~~~~p~CPi--Cr~~-l~~ 175 (183)
.+...|+||++.|.+. ++++ |||+|...||.+|+... ......||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~dP------------------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP------------------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSE------------------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCC------------------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4567899999998863 3565 99999999999999742 123578999 9866 443
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=6.5e-10 Score=73.29 Aligned_cols=47 Identities=26% Similarity=0.510 Sum_probs=38.2
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.|.+. .+|+|||.|+..||.+| ...||+||..+....
T Consensus 5 ~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP------------------KLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC------------------SCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe------------------EEcCCCCcccHHHHccC-------CCCCCcCCcEeecCC
Confidence 556799999988742 36899999999999884 457999999987654
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=2.8e-09 Score=72.04 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
.....|.||++...+. ++..+||||+ |+.+|+.+|.. ....||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG----------------NIIHGRTGHLVTCFHCARRLKK----AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE----------------EEEETTEEEEEECHHHHHHHHH----TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe----------------EEEecCCCCHhHHHHHHHHHHH----hCCcCCCcCchhhc
Confidence 4567899998875532 1223499998 99999999987 35789999998753
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=2.7e-09 Score=96.04 Aligned_cols=50 Identities=26% Similarity=0.617 Sum_probs=41.0
Q ss_pred cccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 107 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 107 ~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
...|+||++.+.+ +++++|||+||..||.+|+.. ....||+||..+....
T Consensus 332 ~~~C~ICle~~~~------------------pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD------------------VKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC------------------EEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC------------------eEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccCCce
Confidence 3689999888753 257899999999999999973 3678999999886643
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.72 E-value=1.5e-09 Score=75.28 Aligned_cols=45 Identities=24% Similarity=0.610 Sum_probs=36.8
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+...|.||++.+.+ ++.++|||. |+..|+.+| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA------------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC------------------EEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC------------------EEEcCCCChhHHHHhhhcC--------ccCCCcCcCccCc
Confidence 35679999988653 257899999 999999999 4699999987653
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=4.7e-09 Score=82.60 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=42.3
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.+...|+||++.|.+. ..++|||+|+..||.+|+.. ....||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRD---AGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH---HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc------------------EECCCCCHHHHHHHHHHHHh---CCCCCCCCccCcchhh
Confidence 4667899999998742 35799999999999999974 2358999999987643
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.56 E-value=2.1e-08 Score=81.58 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+...|+||++.+.+. ++++|||+|...||..|+.. ...+||+|+..+...+.
T Consensus 104 p~~f~CPI~~elm~DP------------------V~~~~Ghtfer~~I~~~l~~---~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELMREP------------------CITPSGITYDRKDIEEHLQR---VGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH---TCSBCTTTCCBCCGGGC
T ss_pred cHhhcccCccccCCCC------------------eECCCCCEECHHHHHHHHHh---CCCCCCCCcCCCChhhC
Confidence 4778999999998863 46799999999999999984 23479999999876543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=8.7e-09 Score=71.36 Aligned_cols=46 Identities=24% Similarity=0.609 Sum_probs=36.0
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
+...|+||++.+.+ +++++|||+ |+..|+.+. ..||+||..+....
T Consensus 24 ~~~~C~IC~~~~~~------------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIA------------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCC------------------BCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCC------------------EEEecCCCHHHHHHHhhCC--------CCCccCCceecCcE
Confidence 34579999988653 246899999 999999643 46999999986643
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=4.1e-08 Score=70.45 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=39.2
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhc----CCCCCCCCcc--cccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA----EDIRDPPCPL--CLGS 172 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~----~~~~~p~CPi--Cr~~ 172 (183)
...+|+||++.+.... .+.+.+|||.|+.+||.+++.. .......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~---------------~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ---------------MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGG---------------EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccccccc---------------ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4567999999987543 2344589999999999999852 1123468999 9988
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.51 E-value=2.7e-08 Score=67.26 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=37.4
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCC--h---HhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG--H---VYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CG--H---vFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
+...|.||++... . . .++||. + .||..||++|+... .+..||+|+..|..
T Consensus 5 ~~~~CrIC~~~~~--~---------------~-l~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG--N---------------E-RFRACGCTGELENVHRSCLSTWLTIS--RNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS--C---------------C-CCCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC--C---------------c-eecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCCeeec
Confidence 5668999987621 1 1 257865 4 99999999999742 46789999998864
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=7.7e-08 Score=66.07 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=37.9
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
...+...|.||++...+ ++++||||+ |+..|+... ..||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN------------------WVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQESF 60 (68)
T ss_dssp SCCCSSCCSSSSSSCCC------------------CEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCCEE
T ss_pred cCCCCCCCCCcCcCCCC------------------EEEECCCChhhhHHHHhcC--------CCCCCCCcchhceE
Confidence 34456789999887542 468999999 999999842 46999999886543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.41 E-value=3.3e-08 Score=69.70 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=36.1
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+...|.||++.+.+ ++++||||+ |+..|+..|. .||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN------------------STFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC------------------EEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc------------------EEEECCCCHHHHHHHHHhcC--------cCCCCCchhhCe
Confidence 34579999887553 367899999 9999999873 699999987653
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.1e-07 Score=81.85 Aligned_cols=55 Identities=18% Similarity=0.411 Sum_probs=43.7
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcc--cccccccCC
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPL--CLGSLMQVE 177 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPi--Cr~~l~~~~ 177 (183)
......|+||++.|.+ +|....|||+|...||.+|+... ....||+ |++.+...+
T Consensus 178 ~~~el~CPIcl~~f~D-----------------PVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPYEA-----------------PLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBCSS-----------------EEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcccC-----------------CeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchhh
Confidence 3466789999999986 34556999999999999999742 3468999 999876544
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=1.9e-07 Score=63.13 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=41.7
Q ss_pred ccccccccchhhhccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCCCC
Q 030048 108 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSG 180 (183)
Q Consensus 108 ~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL-~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~~~ 180 (183)
..|+||++.+.+. +++ +|||+|-..||++|+.+ +..||+++..+..++...
T Consensus 4 ~~CpIs~~~m~dP------------------V~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP------------------VLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE------------------EEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC------------------EEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhhcEE
Confidence 4699999998852 355 89999999999999984 457999999988766543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.18 E-value=1.8e-07 Score=82.73 Aligned_cols=45 Identities=24% Similarity=0.649 Sum_probs=36.8
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHv-FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+...|+||++.+.+ +..++|||. |+..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~------------------~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS------------------VVFIPCGHLVVCQECAPSL--------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC------------------EEEETTCCEEECTTTGGGC--------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc------------------eEEcCCCChhHhHHHHhcC--------CcCCCCCCCccCe
Confidence 34689999998764 256899999 999999988 3699999987643
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.07 E-value=4e-07 Score=81.34 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=39.6
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCccee--EEcCCChHhhHHHHHHHhhcCCC-------CCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAV--AVLVCGHVYHADCLEQRTSAEDI-------RDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~v--avL~CGHvFH~~CLe~wl~~~~~-------~~p~CPiCr~~l~~ 175 (183)
....|+||...+.+.. +.+.. .-+.|||.||..||.+|+..... -...||.|+.++..
T Consensus 307 ~~~ECaICys~~l~~g------------~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG------------EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTC------------CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCC------------CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4557999999877521 11111 13589999999999999963111 12479999998754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.02 E-value=1.6e-06 Score=64.79 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=40.4
Q ss_pred cccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 109 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 109 ~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
-|.+|.-++..- .+++||.|+|+.+|+..|..+ .+..||+|+..+...+
T Consensus 3 fC~~C~~Pi~iy-----------------gRmIPCkHvFCydCa~~~~~~---~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVY-----------------GRMIPCKHVFCYDCAILHEKK---GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEE-----------------EEEETTCCEEEHHHHHHHHHT---TCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEE-----------------eeeccccccHHHHHHHHHHhc---cCCCCcCcCCeeeeeE
Confidence 588897777643 478999999999999999874 5789999999886544
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.26 E-value=0.00012 Score=61.35 Aligned_cols=51 Identities=25% Similarity=0.579 Sum_probs=38.9
Q ss_pred cccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 107 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 107 ~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
...|.||.+.+..+. .--.|+|.||..|+.+|+.. ...+.||.|+..+...
T Consensus 180 i~~C~iC~~iv~~g~-----------------~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ-----------------SCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE-----------------ECSSSCCEECHHHHHHHTTT--CSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCc-----------------ccCccChHHHHHHHHHHHHh--CCCCCCCCCCCCCCCC
Confidence 567999988877431 11249999999999999973 2457899999987654
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.18 E-value=0.033 Score=37.90 Aligned_cols=53 Identities=17% Similarity=0.404 Sum_probs=37.9
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
.....|.||.+. .. .+.=-.|...||..||...+......+-.||.|.....+
T Consensus 10 ~~~~~C~vC~~~---~~---------------ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG---TD---------------VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC---TT---------------CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC---Ce---------------EEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 345679999643 11 222346899999999998887665667899999876544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.83 E-value=0.04 Score=39.08 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=25.9
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-Hh
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RT 156 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~-wl 156 (183)
++..|.||.+.+.... +..-+.|+|.|+..||.. |.
T Consensus 2 ee~~C~~C~~~~~~~a---------------v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA---------------VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC---------------CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc---------------eEECCcCChHHhHHHCHHHhc
Confidence 4567999987643221 223399999999999998 54
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.61 E-value=0.091 Score=38.76 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=30.0
Q ss_pred EcCC-ChHhhHHHHHHHhhcCCCCCCCCcccccccccCCCC
Q 030048 140 VLVC-GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 179 (183)
Q Consensus 140 vL~C-GHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~~ 179 (183)
++.| -|.++..||..++. ....||||.+++..+-..
T Consensus 41 LV~C~dHYLCl~CLtlmL~----~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLS----VSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp EEECSSCEEEHHHHHHTCS----SSSEETTTTEECCCCSCT
T ss_pred eeeecchhhHHHHHHHHHh----hccCCcccCCcCCcceec
Confidence 4567 49999999999998 467899999999877653
No 76
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.18 E-value=0.092 Score=37.89 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=42.7
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCCCCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSGVQ 182 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~~~~q 182 (183)
.....|.||.+. +. .+.=-.|.-+||..||..=+......+-.||.|...-..++..++|
T Consensus 23 ~n~~~C~vC~~~---g~---------------LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke~~~~l 82 (88)
T 1fp0_A 23 DSATICRVCQKP---GD---------------LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 82 (88)
T ss_dssp SSSSCCSSSCSS---SC---------------CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCCSSTTS
T ss_pred CCCCcCcCcCCC---CC---------------EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccchhhccc
Confidence 355679999754 11 1222367889999999887765556778899999877666666655
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.92 E-value=0.043 Score=37.53 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=37.7
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
....|.||.+...... .|.-=.|.--||..||..-.......+..||.|+..+..+
T Consensus 17 ~~~~C~~C~~~~~~~~---------------mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDDGSP---------------MIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCSSCC---------------EEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCCCCC---------------EEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4556999987743211 2233368999999999876554333578899999876543
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.56 E-value=0.078 Score=33.57 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=24.6
Q ss_pred cCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 141 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 141 L~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
-.|.-.||..||..=+.+....+-.||.|+..
T Consensus 19 d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 19 DECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47889999999987655444567789999753
No 79
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.17 E-value=0.066 Score=38.49 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=37.2
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
..+...|.||.+.-.... .+.--.|.-.||..||..-+......+-.||.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~---------------ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDK---------------LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGG---------------CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCC---------------EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445668999987643222 222337889999999986655444567789999864
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.16 E-value=0.2 Score=33.11 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
.....|.||.+. .. .+.--.|.-.||..||..-+.+....+-.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~---------------ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE---------------IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS---------------EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc---------------EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356679999763 11 222336888999999998765555577899999754
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.32 E-value=1 Score=32.73 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=41.0
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
..++|-||.+.+-... +....||.-.|+--.+..|++--..+ .+..||.|...|.
T Consensus 15 ~~qiCqiCGD~VG~~~-----------~Ge~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTV-----------EGDLFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCS-----------SSSBCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred CCCccccccCccccCC-----------CCCEEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 5578999988864321 11234566778888899999988776 5789999999996
No 82
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.90 E-value=0.44 Score=34.37 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=22.9
Q ss_pred CC-hHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 143 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 143 CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
|. .-||..|+. |......+..||.|+....+
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 65 679999998 44444467899999876543
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.64 E-value=0.034 Score=36.64 Aligned_cols=55 Identities=25% Similarity=0.532 Sum_probs=38.5
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.....|.||.+. +. .+.--.|.-.||..||..-+......+-.||.|......++
T Consensus 3 ~~~~~C~vC~~~---g~---------------ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~ 57 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ---------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57 (60)
T ss_dssp CCCSSCTTTCCC---SS---------------CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTT
T ss_pred CCCCCCcCCCCC---Cc---------------EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchh
Confidence 356779999764 11 22334789999999999766554456778999987765543
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.49 E-value=0.053 Score=35.27 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=34.8
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 171 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~ 171 (183)
.....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~---------------ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ---------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC---------------CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce---------------EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456779999764 11 22334789999999999766554456778999964
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.86 E-value=0.093 Score=35.25 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~ 177 (183)
.....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|...-....
T Consensus 6 ~~~~~C~vC~~~---g~---------------ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~ 60 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE---------------LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV 60 (66)
T ss_dssp SCCCSBSSSSCC---SS---------------CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCC
T ss_pred CCCCCCccCCCC---CC---------------EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccC
Confidence 356679999753 11 22233688899999999766554456778999987654443
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.43 E-value=0.058 Score=35.71 Aligned_cols=54 Identities=19% Similarity=0.498 Sum_probs=36.5
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCC-CCCCCCccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSL 173 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~-~~~p~CPiCr~~l 173 (183)
+...|+||.+++.+... .|.--.|..=||..|+.--....+ .....||.|+..-
T Consensus 5 e~~~C~~C~~~~~~~~~--------------mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEF--------------WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSC--------------EEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCC--------------EEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 55679999988753322 234457888999999975433211 2568899998753
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.38 E-value=0.13 Score=37.44 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=32.3
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 170 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr 170 (183)
..++.|.||.+.-... ..+.=-.|+..||..||...+.......-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~---------------~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL---------------DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTT---------------TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCc---------------CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4677899997652211 11333579999999999987653333455566553
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.14 E-value=0.14 Score=33.91 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=35.5
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccc
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 173 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l 173 (183)
+.....|.||.+. .. .+.--.|.-.||..||..-+.+....+-.||.|....
T Consensus 6 d~~~~~C~vC~~~---g~---------------ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE---------------LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SS---------------CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CC---------------EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456779999753 11 1112258889999999976665555677899998754
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.03 E-value=0.87 Score=32.89 Aligned_cols=14 Identities=43% Similarity=1.056 Sum_probs=13.0
Q ss_pred CCChHhhHHHHHHH
Q 030048 142 VCGHVYHADCLEQR 155 (183)
Q Consensus 142 ~CGHvFH~~CLe~w 155 (183)
.|+-+||..||.+.
T Consensus 34 vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 34 VCTRVFHDGCLRRM 47 (89)
T ss_dssp SSSSCCCHHHHHHH
T ss_pred cccccccHhhcccc
Confidence 58999999999997
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.92 E-value=0.3 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.|.-+||..||..-+......+-.||.|+..-.
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 588999999998877655556778999997654
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.91 E-value=1.1 Score=30.81 Aligned_cols=58 Identities=19% Similarity=0.456 Sum_probs=37.0
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcC-CCCCCCCccccccccc
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~-~~~~p~CPiCr~~l~~ 175 (183)
++.....| ||..++..... .|.--.|.-=||..|+.--.... ......||.|+....+
T Consensus 8 ~~~~~~~C-~C~~~~d~~~~--------------MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNVNHF--------------MIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSC--------------EEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred ccCCccEE-EcCCccCCCCc--------------eEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 44455567 99887642221 34445799999999996433211 1257899999977543
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.50 E-value=1.6 Score=31.88 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=30.3
Q ss_pred cccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH---HhhcCCCCCCCCcccc
Q 030048 107 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ---RTSAEDIRDPPCPLCL 170 (183)
Q Consensus 107 ~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~---wl~~~~~~~p~CPiCr 170 (183)
...|.+|+..=... ..+.....+.=-.|+..||..||.. ........+-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~---------~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQN---------REKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCC---------TTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhC---------cCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45799997652211 0111123445568999999999952 2211112455566664
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.94 E-value=0.2 Score=33.21 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=36.8
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhc--C-CCCCCCCccccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA--E-DIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~--~-~~~~p~CPiCr~~l~~ 175 (183)
.....|.||.+...+.. ...+.--.|.-.||..|+..-+.. . ...+-.||.|......
T Consensus 4 ~~~~~C~vC~~~~~~~~-------------~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAP-------------NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTT-------------BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCC-------------CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 35678999987643211 112333478899999999864422 1 2356789999876543
No 94
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.52 E-value=0.17 Score=37.42 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=27.8
Q ss_pred cCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 141 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 141 L~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
-.|...||..||..-+......+-.||.|...+..+
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 478899999999976655555677899998776544
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=74.92 E-value=0.21 Score=40.25 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=35.9
Q ss_pred cccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhh---cC----CCCCCCCcccccccc
Q 030048 107 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS---AE----DIRDPPCPLCLGSLM 174 (183)
Q Consensus 107 ~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~---~~----~~~~p~CPiCr~~l~ 174 (183)
+..|+||.+.+.+.+. +...|.--.|..-||..|+.---. .. +.....||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~-----------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDY-----------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCT-----------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCccc-----------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4569999999886542 111234457899999999852110 00 002578999997643
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.89 E-value=0.27 Score=35.74 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=27.1
Q ss_pred eEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccc
Q 030048 138 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 173 (183)
Q Consensus 138 vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l 173 (183)
+.--.|.-.||..||..-+......+-.||.|....
T Consensus 70 l~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 70 LVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp EECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred eECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 344578999999999976655445677899998654
No 97
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.51 E-value=0.62 Score=37.45 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.|.-.||..||..-+......+-.||.|+..-.
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 578999999998877655556788999997643
No 98
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=73.77 E-value=0.59 Score=31.79 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=23.9
Q ss_pred CCChHhhHHHHHHHhhcCCCC-CCCCcccccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLGS 172 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~-~p~CPiCr~~ 172 (183)
.|.-.||..||..-+.+.... +-.||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 688999999999766544445 7789999753
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=73.58 E-value=0.67 Score=37.02 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.2
Q ss_pred cCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 141 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 141 L~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
-.|.-+||..|+..=+......+-.||.|+..-.
T Consensus 18 d~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 18 NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp TTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 3688899999998766554556778999997644
No 100
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.35 E-value=0.59 Score=31.64 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.....| ||.....+... .|.--.|.-=||..|+.--..........||.|+....
T Consensus 14 ~~~~~C-~C~~~~~~g~~--------------mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGER--------------MLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SSEECC-TTCCCSCCSSC--------------EEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CcceEe-eCCCccCCCCc--------------EEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 345568 79877543221 23444788889999987543323346789999987543
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.79 E-value=0.55 Score=33.25 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=27.3
Q ss_pred CCChHhhHHHHHHHhhc----CCCCCCCCcccccccccCC
Q 030048 142 VCGHVYHADCLEQRTSA----EDIRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~----~~~~~p~CPiCr~~l~~~~ 177 (183)
.|...||..|+..-+.. ....+-.|+.|......+.
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 68999999999976542 3446788999998765544
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.23 E-value=0.67 Score=33.94 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=24.8
Q ss_pred cCCChHhhHHHHHHHhhcCCCCCCCCccccc
Q 030048 141 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 171 (183)
Q Consensus 141 L~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~ 171 (183)
-.|...||..||..-+.+....+-.||.|+.
T Consensus 81 d~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 81 DSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3689999999998777655556778999975
No 103
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.82 E-value=0.57 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCChHhhHHHHHHHhhcCCCC-CCCCccccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLG 171 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~-~p~CPiCr~ 171 (183)
.|.-.||..||..-+...... +-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 788999999999766544444 678999974
No 104
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=68.75 E-value=0.69 Score=32.21 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=23.1
Q ss_pred CCChHhhHHHHHHHhhcCCCCC-CCCccccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIRD-PPCPLCLG 171 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~~-p~CPiCr~ 171 (183)
.|.-.||..||..-|......+ -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6889999999998776544455 68999975
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=68.14 E-value=1.7 Score=30.73 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=35.4
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
.....|.||.+.-.... ...+.--.|.-.||..|+..-+ ....+-.||.|......+
T Consensus 23 ~~~~~C~vC~~~~s~~~-------------~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNS-------------NVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSE-------------EEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCC-------------CCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchh
Confidence 35678999976531110 0112223678899999998543 223577899998765443
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.97 E-value=1 Score=30.55 Aligned_cols=54 Identities=20% Similarity=0.421 Sum_probs=34.1
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcC-----CCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-----DIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~-----~~~~p~CPiCr~~l~~ 175 (183)
....| ||.+...... .|.--.|.--||..|+.--.... ......||.|+....+
T Consensus 15 ~~~~C-~C~~~~~~~~---------------MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 15 NALYC-ICRQPHNNRF---------------MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp TCCCS-TTCCCCCSSC---------------EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCEE-ECCCccCCCC---------------EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 44567 8988764221 23444789999999985322110 1247899999977654
No 107
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.04 E-value=0.29 Score=31.27 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=30.1
Q ss_pred cccccccchhhhccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHhhcCCCCCCCCcccc
Q 030048 109 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCL 170 (183)
Q Consensus 109 ~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL-~CGHvFH~~CLe~wl~~~~~~~p~CPiCr 170 (183)
.|.||.+++.+... .|.-- .|.-=||..|+.--.......+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~--------------mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVD--------------WVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCC--------------EEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCc--------------EEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48899888754332 23444 68888999998643321112567899985
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.91 E-value=1.7 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=22.8
Q ss_pred EEcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 139 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 139 avL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
.=-.|.-.||..|+..-+... .....||.|+..
T Consensus 44 ~Cd~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~ 76 (98)
T 2lv9_A 44 CCDKCSVWQHIDCMGIDRQHI-PDTYLCERCQPR 76 (98)
T ss_dssp EBTTTCBEEETTTTTCCTTSC-CSSBCCTTTSSS
T ss_pred EcCCCCCcCcCcCCCCCccCC-CCCEECCCCcCC
Confidence 334789999999997543322 235799999743
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=62.08 E-value=1.6 Score=29.69 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=23.1
Q ss_pred CC-hHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 143 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 143 CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
|. .-||..|+. |......+..||.|+.....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence 66 689999998 54444467899999876543
No 110
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=61.88 E-value=1 Score=34.80 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=33.2
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhc-CCCCCCCCcccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA-EDIRDPPCPLCLGS 172 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~-~~~~~p~CPiCr~~ 172 (183)
....| ||.....+... .+.--.|.-.||..|+.--... .......||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~--------------mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKF--------------YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSC--------------EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCC--------------EeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 44569 99887543221 2334478999999999532221 12356889999864
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.49 E-value=7.4 Score=30.07 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCChHhhHHHHHHHhh-----c--CCCCCCCCcccccc
Q 030048 142 VCGHVYHADCLEQRTS-----A--EDIRDPPCPLCLGS 172 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~-----~--~~~~~p~CPiCr~~ 172 (183)
.|--+||..||..-+. + ....+-.||+|...
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 7889999999997653 1 13467789999843
No 112
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=56.95 E-value=5.4 Score=39.63 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCC-hHhhHHHHHHHhhcCCCCCCCCcccccccccCCC
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 178 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~ 178 (183)
.+.-.|+|=.+.+.+. ++++-| +.|=..+|++|+. .+++||+=+.++...+.
T Consensus 889 P~~F~cPIs~~lM~DP------------------VilpsG~~TydR~~I~~wl~----~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP------------------VILPASKMNIDRSTIKAHLL----SDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTTCCEEEHHHHHHHHT----TCCBCTTTCCBCCGGGC
T ss_pred cHHhCCcchhhHHhCC------------------eEcCCCCEEECHHHHHHHHh----cCCCCCCCCCCCCcccc
Confidence 3677899999988763 578998 5899999999998 37799999888876543
No 113
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=56.37 E-value=3.4 Score=27.60 Aligned_cols=52 Identities=23% Similarity=0.462 Sum_probs=32.5
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHhh------cCCCCCCCCccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTS------AEDIRDPPCPLCLG 171 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL-~CGHvFH~~CLe~wl~------~~~~~~p~CPiCr~ 171 (183)
....|++|.+++..... .|.-- .|.--||..|+.--.. ........||.|.+
T Consensus 7 ~~~~C~~C~~p~~~~~~--------------mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQD--------------AILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSC--------------EEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCC--------------eEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 45679999999865432 23344 7888999999853221 11223567998863
No 114
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.20 E-value=4.5 Score=27.65 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=23.3
Q ss_pred CCChHhhHHHHHHHhhc-----CCCCCCCCccccccccc
Q 030048 142 VCGHVYHADCLEQRTSA-----EDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~-----~~~~~p~CPiCr~~l~~ 175 (183)
.|..-||..|+.--... .......||.|+....+
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 79899999999643221 11246889999976443
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=54.66 E-value=1.8 Score=36.01 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=21.0
Q ss_pred CCChHhhHHHHHHHhhcCCCC-CCCCccccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLG 171 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~-~p~CPiCr~ 171 (183)
.|.-.||..||..=+...... +-.||.|..
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 688999999999766544444 678999975
No 116
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=54.16 E-value=1.4 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=20.7
Q ss_pred CC-hHhhHHHHHHHhhcCCCCCCCCccccc
Q 030048 143 CG-HVYHADCLEQRTSAEDIRDPPCPLCLG 171 (183)
Q Consensus 143 CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~ 171 (183)
|. ..||..|+. +......+..||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 5544456788999975
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=53.67 E-value=4.7 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=19.1
Q ss_pred CCChHhhHHHHHHHhhcCCCCCCCCcccc
Q 030048 142 VCGHVYHADCLEQRTSAEDIRDPPCPLCL 170 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl~~~~~~~p~CPiCr 170 (183)
.|--+||..||. +......+-.||-|.
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCC
Confidence 477899999998 554444556688664
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=53.08 E-value=0.42 Score=34.99 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=33.8
Q ss_pred ccccccccchhhhccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHhh------cCCCCCCCCccccccccc
Q 030048 108 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTS------AEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 108 ~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL-~CGHvFH~~CLe~wl~------~~~~~~p~CPiCr~~l~~ 175 (183)
..|+||.+++.+...+ +.-= .|.-=||..|+.--.. ........||.|+.....
T Consensus 4 ~~C~iC~~p~~~~~~m--------------i~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDA--------------ILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCE--------------EECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCE--------------EEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 4699999997543211 1222 6788899999863211 012246789999976543
No 119
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=51.96 E-value=2.2 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=19.3
Q ss_pred ccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 030048 108 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 152 (183)
Q Consensus 108 ~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CL 152 (183)
..|+.|.+...... .+..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~~E-----------------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE-----------------KVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG-----------------CCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecce-----------------eEEECCeEecccCC
Confidence 47999988765332 23455888999884
No 120
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=50.98 E-value=7.2 Score=26.41 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
......|.||.+.-.+. +...+.-=.|.-.||..|+..-. ....+-.||.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~-------------~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQN-------------SNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCS-------------SSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-------------CCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 34677899997653111 01122223788899999998542 23357789999764
No 121
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=49.41 E-value=12 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=22.3
Q ss_pred CCChHhhHHHHHHHh-----hcC--CCCCCCCcccccc
Q 030048 142 VCGHVYHADCLEQRT-----SAE--DIRDPPCPLCLGS 172 (183)
Q Consensus 142 ~CGHvFH~~CLe~wl-----~~~--~~~~p~CPiCr~~ 172 (183)
.|-.+||..||..-+ .++ ...+-.|++|...
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 678999999999752 222 2456789999754
No 122
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.25 E-value=1.9 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=20.6
Q ss_pred CC-hHhhHHHHHHHhhcCCCCCCCCccccc
Q 030048 143 CG-HVYHADCLEQRTSAEDIRDPPCPLCLG 171 (183)
Q Consensus 143 CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~ 171 (183)
|. .-||..|+. +......+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 689999999 5444446788999975
No 123
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=48.23 E-value=3.8 Score=24.40 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.2
Q ss_pred Ccccccccccchhhh
Q 030048 106 VKIVCGICQKLLRRK 120 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~ 120 (183)
+..+|+||++.|...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 567899999998754
No 124
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.22 E-value=5.4 Score=26.50 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=18.7
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 152 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CL 152 (183)
....|..|.+.+... .+..-+.+||.+|+
T Consensus 14 ~~~~C~~C~~~I~~~------------------~~~a~~~~~H~~CF 42 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV------------------FVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCSSSCCCCCSS------------------CEECSSCEECTTTT
T ss_pred CCCccccCCCCccCc------------------EEEECcceeCcCcC
Confidence 456799998776632 23445778887774
No 125
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.00 E-value=2.4 Score=28.06 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=20.9
Q ss_pred CC-hHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 143 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 143 CG-HvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
|. .-||..|+. +......+..||.|+..
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 789999998 44444467889999753
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.94 E-value=3.1 Score=27.99 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=32.6
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
+...| ||..+..... .|.--.|.--||..|+.--... ......||.|+..
T Consensus 18 ~~~~C-iC~~~~~~~~---------------MIqCd~C~~WfH~~Cvgi~~~~-~~~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRP---------------MIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCCCTTCC---------------EEECTTTCCEEETTTTTCCTTS-CCSSCCCHHHHTC
T ss_pred CceEe-ECCCcCCCCC---------------EEECCCCCccccccccCcCccc-CCCcEECCCCCCC
Confidence 45568 9987754221 3444568999999999744321 1246789999753
No 127
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.37 E-value=18 Score=32.19 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=26.7
Q ss_pred eeEEcCCChH--hhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 137 AVAVLVCGHV--YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 137 ~vavL~CGHv--FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+++-..|.|. |=++=+.++... ...-.||+|.+.+...
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~--~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQ--IPTWQCPVCQIDIALE 301 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHH--SCCCBCTTTCCBCCGG
T ss_pred cCcCCcCCCcceECHHHHHHHhhc--CCceeCCCCCcccCHH
Confidence 4677899998 666555555443 3567899999887554
No 128
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=39.50 E-value=20 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhh
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 157 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~ 157 (183)
+......|.+|.+-|++.... .---.=+|-|+-.|-...+.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFV--------------QCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFV--------------QCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSE--------------ECSSCSSCEECHHHHHHHHH
T ss_pred CCCCeeEeecchhhhccCcee--------------eCCCccCCeeeccccHHHHH
Confidence 344566799999999976421 00112379999999998885
No 129
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.54 E-value=16 Score=26.98 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=18.4
Q ss_pred EcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 140 VLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 140 vL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
-..||++| . +.-.....||.|+......
T Consensus 70 C~~CG~~F----~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 70 CRKCGFVF----K-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp BTTTCCBC----C-----CCSSCCSSCSSSCCCCBCC
T ss_pred hhhCcCee----c-----ccCCCCCCCcCCCCCccCC
Confidence 46899999 1 1112356899999875443
No 130
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.01 E-value=6.8 Score=33.86 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcC---CCCCCCCcccccccc
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE---DIRDPPCPLCLGSLM 174 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~---~~~~p~CPiCr~~l~ 174 (183)
+.+...|.+|...|.--. . .-.--.||++|+..|....+... ......|-.|-..+.
T Consensus 372 ~~~~~~c~~c~~~f~~~~-----r---------~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTL-----R---------RHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcc-----h---------hhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 445668999998886311 0 11235799999999998876421 112345777766543
No 131
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.23 E-value=2.7 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.1
Q ss_pred hHhhHHHHHHHhhcCCCCCCCCcc-cccccc
Q 030048 145 HVYHADCLEQRTSAEDIRDPPCPL-CLGSLM 174 (183)
Q Consensus 145 HvFH~~CLe~wl~~~~~~~p~CPi-Cr~~l~ 174 (183)
--||..|+. |......+..||. |+..-.
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~~~k 78 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKEIAN 78 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcchhh
Confidence 679999997 4433345788999 986433
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.67 E-value=7.1 Score=25.59 Aligned_cols=40 Identities=28% Similarity=0.511 Sum_probs=26.2
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
....|..|.+.+.... .+..-+..||.+|+ .|-.|.+.|.
T Consensus 8 ~~~~C~~C~~~I~~~~-----------------~v~a~~~~~H~~CF------------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE-----------------KVSSLGKDWHKFCL------------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTT-----------------EEEETTEEEETTTC------------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCe-----------------EEEECCeEeeCCCC------------CCCCCCCccC
Confidence 4467999988877432 23345788888774 3666666654
No 133
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=6.9 Score=26.34 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=25.4
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
....|..|.+.+.... . +..=+..||.+|+ .|-.|...|.
T Consensus 14 ~~~~C~~C~~~I~~~~---------------~--v~a~~~~wH~~CF------------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ---------------S--LLALDKQWHVSCF------------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSC---------------C--EEETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCe---------------E--EEECCcccccccC------------CcCcCCCCcC
Confidence 4567999988876432 1 2234778887763 3666766654
No 134
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=36.11 E-value=23 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.4
Q ss_pred eeEEcCCChH--hhHHHHHHHhhcCCCCCCCCcccccccccC
Q 030048 137 AVAVLVCGHV--YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 137 ~vavL~CGHv--FH~~CLe~wl~~~~~~~p~CPiCr~~l~~~ 176 (183)
+++-..|.|. |=++=+.++... ...-.||+|.+.+...
T Consensus 228 P~Rg~~C~HlqCFDl~sfL~~~~~--~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 228 PCRAVTCTHLQCFDAALYLQMNEK--KPTWICPVCDKKAAYE 267 (360)
T ss_dssp EEEETTCCCCCCEEHHHHHHHHHH--SCCCBCTTTCSBCCGG
T ss_pred CCcCCCCCCCccCCHHHHHHHHhh--CCCeECCCCCcccCHH
Confidence 4677899998 766666665543 2567899999987654
No 135
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.36 E-value=7.3 Score=26.29 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=20.5
Q ss_pred hHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 145 HVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 145 HvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
.-||..|+. +.........||.|+....
T Consensus 30 ~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVG--LTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHT--CSSCCSSCCCCHHHHHHHH
T ss_pred cCCcccccc--cCcCCCCCEECCCCCcccc
Confidence 679999998 3333345678999987653
No 136
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.34 E-value=12 Score=25.84 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=36.7
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCC----CCCCCCcccccccccCC
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED----IRDPPCPLCLGSLMQVE 177 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~----~~~p~CPiCr~~l~~~~ 177 (183)
+.+...|.+|...|.--. ..-.=-.||.+|+..|....+.... .....|-.|...+....
T Consensus 18 d~~~~~C~~C~~~Fs~~~--------------RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~~ 81 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTV--------------RRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN 81 (84)
T ss_dssp TTTCCBCTTTCCBCCTTS--------------CCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTSC
T ss_pred CCCCCCCcCcCCccccch--------------hcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhcc
Confidence 445567999999886321 0112358999999999887643211 12246777766554443
No 137
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.32 E-value=9.7 Score=28.51 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=30.2
Q ss_pred CCCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 102 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 102 Sp~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
+|+.+...|.+|...|.--.- .-.--.||.+|+..|....+.. ...|-.|-..
T Consensus 14 ~Pd~~~~~C~~C~~~Fs~~~R--------------kHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~ 66 (120)
T 1y02_A 14 SPTGLEPSCKSCGAHFANTAR--------------KQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRF 66 (120)
T ss_dssp ------CCCTTTCCCCSSGGG--------------CEECTTTCCEECGGGEEC--------CCEEHHHHHH
T ss_pred cCccccCcccCcCCccccccc--------------cccCCCCCCeeCHHHhCCCCCC----ceECHHHHHH
Confidence 466677889999998863210 1134689999999998876652 4467777543
No 138
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.23 E-value=13 Score=25.46 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=35.8
Q ss_pred CCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcC--CCCCCCCcccccccccC
Q 030048 104 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQV 176 (183)
Q Consensus 104 ~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~--~~~~p~CPiCr~~l~~~ 176 (183)
+.+...|.+|...|.--.- .-.=-.||.+|+..|....+... ......|-.|...+...
T Consensus 16 d~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 76 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRR--------------KHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQR 76 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBC--------------CEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC-
T ss_pred CccCCcccCcCCcccCccc--------------cccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHHh
Confidence 3345579999998863210 11235899999999998765321 11223577776665443
No 139
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.07 E-value=12 Score=25.09 Aligned_cols=30 Identities=27% Similarity=0.649 Sum_probs=20.1
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 152 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CL 152 (183)
....|..|.+.+.... .+..=+.+||.+|+
T Consensus 14 ~~~~C~~C~~~I~~~e-----------------~v~a~~~~wH~~CF 43 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE-----------------RLCVNGHFFHRSCF 43 (82)
T ss_dssp SSCBCSSSCCBCCTTT-----------------BCCBTTBCCBTTTC
T ss_pred CCCCCcccCCCcccce-----------------EEEECCCeeCCCcC
Confidence 4567999988875432 12345778888874
No 140
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=30.85 E-value=13 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=23.9
Q ss_pred EcCCChHhhHHHHHHHhhcC-CCCCCCCcccccc
Q 030048 140 VLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGS 172 (183)
Q Consensus 140 vL~CGHvFH~~CLe~wl~~~-~~~~p~CPiCr~~ 172 (183)
...|.|+++..++..|-... ......|+.|...
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCCcChhhccccccccccccCCCCCcCcccccc
Confidence 46899999999998886432 1223679999875
No 141
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.19 E-value=11 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhh
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 157 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~ 157 (183)
.+...|.+|...|.--. ..-.=-.||++|+..|......
T Consensus 67 ~~~~~C~~C~~~Fs~~~--------------RrHHCR~CG~vfC~~Cs~~~~~ 105 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTV--------------RRHHCRQCGNIFCAECSAKNAL 105 (125)
T ss_dssp GGCCBCTTTCCBCCSSS--------------CCEECTTTCCEECGGGSCEEEC
T ss_pred CCCCCCcCcCCcccccc--------------ccccCCCCCeEEChHHhCCccc
Confidence 34557999999876211 0112358999999999887653
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.40 E-value=20 Score=25.03 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=33.7
Q ss_pred CCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCC--CCCCCCccccccc
Q 030048 105 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED--IRDPPCPLCLGSL 173 (183)
Q Consensus 105 ~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~--~~~p~CPiCr~~l 173 (183)
.+...|.+|...|.--. ..-.--.||.+|+..|...++.... .....|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~--------------RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTK--------------RRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSS--------------CCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchh--------------hCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34567999998876211 0123468999999999988754211 1223566665544
No 143
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.39 E-value=13 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=27.2
Q ss_pred CCCCcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhh
Q 030048 103 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 157 (183)
Q Consensus 103 p~~~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~ 157 (183)
|+.+...|.+|...|.--. ..-.=-.||.+|+..|....+.
T Consensus 10 pd~~~~~C~~C~~~F~~~~--------------RrHHCR~CG~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLK--------------KRRSCSNCGNSFCSRCCSFKVP 50 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSS--------------CCEECSSSCCEECTTTSCEEEC
T ss_pred cCCCCCcCcCcCCccccch--------------hhhhhcCCCcEEChhhcCCcee
Confidence 3445567999999885211 0112357999999999876543
No 144
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=26.25 E-value=17 Score=22.95 Aligned_cols=42 Identities=21% Similarity=0.574 Sum_probs=26.6
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
....|..|.+.+..... .+..=|.+||.+|+ .|-.|.+.+..
T Consensus 10 ~~~~C~~C~~~i~~~e~----------------~~~~~~~~~H~~CF------------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEK----------------IVNSNGELYHEQCF------------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCE----------------EEEETTEEEETTTS------------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCce----------------EEEeCcCeeCcCCC------------cccCCCCCCCC
Confidence 34579999888774321 12245778888775 46667666644
No 145
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.06 E-value=22 Score=24.03 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=8.0
Q ss_pred cccccccccchhh
Q 030048 107 KIVCGICQKLLRR 119 (183)
Q Consensus 107 ~~~C~IC~e~L~~ 119 (183)
...|..|.+.+..
T Consensus 15 ~~~C~~C~~~I~~ 27 (91)
T 2d8y_A 15 RETCVECQKTVYP 27 (91)
T ss_dssp SCBCTTTCCBCCT
T ss_pred CCcCccCCCccCC
Confidence 3457777666653
No 146
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.78 E-value=8.9 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.589 Sum_probs=25.3
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~ 174 (183)
....|+.|.+.+... .+..-|..||.+|+ .|-.|.+.|.
T Consensus 24 ~~~~C~~C~~~I~~~------------------~v~a~~~~~H~~CF------------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP------------------FLVALGKSWHPEEF------------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSC------------------EEEETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCccCCCEecce------------------EEEECCccccccCC------------ccCCCCCCCC
Confidence 456799998887421 23455788888764 3666666654
No 147
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.38 E-value=38 Score=24.04 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=28.8
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCccccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~ 175 (183)
+--.|..|.+.|..... +..=|-.|+..|..+.. .+.|..|.+.+..
T Consensus 29 ~CF~C~~C~~~L~~~~f-----------------~~~~g~~yC~~cy~~~~------~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIY-----------------VMVNDKPVCKPCYVKNH------AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEE-----------------EEETTEEEEHHHHHHHS------CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEE-----------------EeECCEEechHHhCcCc------CccCcccCCcCCc
Confidence 34568888887764321 12345667777766543 3568888877764
No 148
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.09 E-value=19 Score=25.10 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=32.5
Q ss_pred CcccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCC---CCCCCCcccccccc
Q 030048 106 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED---IRDPPCPLCLGSLM 174 (183)
Q Consensus 106 ~~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~---~~~p~CPiCr~~l~ 174 (183)
+...|.+|...|.--. ..-.=-.||.+|+..|....+.... .....|-.|...+.
T Consensus 8 ~~~~C~~C~~~F~~~~--------------RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFK--------------KEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSS--------------CEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCcc--------------ccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4557999998876321 0112357899999999876543211 12245777765544
No 149
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.18 E-value=2.4 Score=31.23 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=26.6
Q ss_pred cccccccccchhhhccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHhhcCCCCCCCCcccccccccCCCC
Q 030048 107 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 179 (183)
Q Consensus 107 ~~~C~IC~e~L~~~~~~~g~~~~~~~~~~~~vavL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~l~~~~~~ 179 (183)
...|++|..+|+... ++.++..|-..... ...||-|..++..-.+.
T Consensus 32 ~~~CP~Cq~eL~~~g----------------------~~~hC~~C~~~f~~-----~a~CPdC~q~LevLkAC 77 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN----------------------GHARCRSCGEFIEM-----KALCPDCHQPLQVLKAC 77 (101)
T ss_dssp CCBCSSSCSBEEEET----------------------TEEEETTTCCEEEE-----EEECTTTCSBCEEEEET
T ss_pred cccCccCCCcceecC----------------------CEEECccccchhhc-----cccCcchhhHHHHHHHh
Confidence 378999998876321 12223334333333 45688888887654443
No 150
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.64 E-value=29 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=14.1
Q ss_pred EcCCChHhhHHHHHHHhhcCCCCCCCCcccccc
Q 030048 140 VLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 172 (183)
Q Consensus 140 vL~CGHvFH~~CLe~wl~~~~~~~p~CPiCr~~ 172 (183)
-..|||+|-. + ....||+|..+
T Consensus 141 C~~CG~i~~~--------~---~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD--------E---APEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES--------C---CCSBCTTTCCB
T ss_pred eCCCCCeeCC--------C---CCCCCCCCCCC
Confidence 4578888741 1 12389999864
No 151
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.30 E-value=21 Score=20.21 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=8.8
Q ss_pred CCCCccccccc
Q 030048 163 DPPCPLCLGSL 173 (183)
Q Consensus 163 ~p~CPiCr~~l 173 (183)
+..||+|+..+
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 56899999764
No 152
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.03 E-value=1e+02 Score=21.48 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCChHhhHHHHH------HHhhc-CCCCCCCCcccccccc
Q 030048 142 VCGHVYHADCLE------QRTSA-EDIRDPPCPLCLGSLM 174 (183)
Q Consensus 142 ~CGHvFH~~CLe------~wl~~-~~~~~p~CPiCr~~l~ 174 (183)
.|+.-||..|+. +-+.+ .+.....||.|.....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 488888888852 22222 1234688999986543
No 153
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=21.10 E-value=13 Score=24.23 Aligned_cols=11 Identities=27% Similarity=0.476 Sum_probs=6.9
Q ss_pred cccccccchhh
Q 030048 109 VCGICQKLLRR 119 (183)
Q Consensus 109 ~C~IC~e~L~~ 119 (183)
.|+.|.+.+..
T Consensus 2 ~C~~C~~~I~~ 12 (76)
T 1iml_A 2 KCPKCDKEVYF 12 (76)
T ss_dssp BCTTTSSBCCG
T ss_pred cCCCCCCEEEC
Confidence 46777766653
No 154
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.94 E-value=13 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.463 Sum_probs=25.0
Q ss_pred eEEcCCChHhhHHHHHHHhhcC-CCCCCCCccccccccc
Q 030048 138 VAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGSLMQ 175 (183)
Q Consensus 138 vavL~CGHvFH~~CLe~wl~~~-~~~~p~CPiCr~~l~~ 175 (183)
|.--.|.-=||..|+.--.... ......||.|+....+
T Consensus 26 I~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 26 IECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp EECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred EEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 3445689899999996443211 1135789999976544
Done!