Query 030050
Match_columns 183
No_of_seqs 158 out of 668
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.2E-37 4E-42 226.9 7.0 75 91-165 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.1E-37 3.6E-42 228.1 5.6 74 91-164 4-77 (78)
3 2rpr_A Flywch-type zinc finger 84.8 0.82 2.8E-05 32.1 3.5 53 98-163 18-73 (87)
4 1cz6_A Protein (androctonin); 26.8 20 0.00069 20.6 0.7 8 126-133 16-23 (26)
5 1odh_A MGCM1; transcription fa 15.1 1.1E+02 0.0037 25.0 2.9 20 147-166 140-159 (174)
6 3kp1_A D-ornithine aminomutase 13.7 54 0.0018 32.2 1.0 64 103-178 27-95 (763)
7 1xiw_B T-cell surface glycopro 11.2 58 0.002 22.5 0.2 27 105-131 17-53 (79)
8 4a6q_A Histone deacetylase com 10.8 77 0.0026 24.9 0.9 43 137-181 16-60 (143)
9 3kgb_A Thymidylate synthase 1/ 10.2 47 0.0016 28.9 -0.6 11 106-116 114-124 (294)
10 3ed7_A Tsase, TS, thymidylate 10.0 47 0.0016 29.0 -0.7 11 106-116 117-127 (295)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-37 Score=226.87 Aligned_cols=75 Identities=52% Similarity=1.054 Sum_probs=72.2
Q ss_pred ceeeEeeccccccCCCCchhhccCceeccCCCCCCceeecccCCCCcccceeeecCCCCEEEEEEeccCCCCCCC
Q 030050 91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEK 165 (183)
Q Consensus 91 ~r~~~qt~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~~ 165 (183)
.|++|+|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999774
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.1e-37 Score=228.09 Aligned_cols=74 Identities=61% Similarity=1.075 Sum_probs=68.8
Q ss_pred ceeeEeeccccccCCCCchhhccCceeccCCCCCCceeecccCCCCcccceeeecCCCCEEEEEEeccCCCCCC
Q 030050 91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIE 164 (183)
Q Consensus 91 ~r~~~qt~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~ 164 (183)
.+++|+|++++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999976
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=84.84 E-value=0.82 Score=32.11 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=33.5
Q ss_pred ccccccCCCCchhhccCceeccCCCCCCceeeccc---CCCCcccceeeecCCCCEEEEEEeccCCCCC
Q 030050 98 RSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTH---EGCNVKKQVQRLTNDEGIVVTTYEGMHNHRI 163 (183)
Q Consensus 98 ~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~---~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~ 163 (183)
+....++-|||.-.+-- . . ..+.|.+|+. .+|.|+=.... +. + .-.+.||||.
T Consensus 18 rG~~~Lv~~Gy~Y~~~~--~-~---~~~~yWrC~~~~~~kCrARi~T~~---~~--~--~~~~~HnH~p 73 (87)
T 2rpr_A 18 LGGRFLVHESFLYRKEK--A-A---GEKVYWMCRDQARLGCRSRAITQG---HR--I--MVMRSHCHQP 73 (87)
T ss_dssp TTEEEEEETTEEEEEEE--E-C---SSCEEEEEGGGTTSCCCCEEEEET---TE--E--EECSCCSSCC
T ss_pred CCCcEEEECCEEEEeee--c-C---CCcEEEEecCCCCCCCCEEEEEcC---CC--E--ECCCCcCCCC
Confidence 33445677999776521 1 1 2368999987 58999855432 21 2 2468899974
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=26.76 E-value=20 Score=20.63 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=6.5
Q ss_pred ceeecccC
Q 030050 126 SYYRCTHE 133 (183)
Q Consensus 126 sYYrCt~~ 133 (183)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999873
No 5
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=15.06 E-value=1.1e+02 Score=24.97 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.0
Q ss_pred CCCEEEEEEeccCCCCCCCC
Q 030050 147 DEGIVVTTYEGMHNHRIEKP 166 (183)
Q Consensus 147 D~~~~~ttY~G~HnHp~~~~ 166 (183)
|+..+...-.|.|+||.|..
T Consensus 140 ~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 140 DGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp CSSBEEEEEECCCCSCCCCC
T ss_pred cCCEEEEecccccCCCCCCC
Confidence 34344446689999998865
No 6
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=13.72 E-value=54 Score=32.18 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=39.6
Q ss_pred cCCCCchhhccCceeccCCCCCCceeeccc-----CCCCcccceeeecCCCCEEEEEEeccCCCCCCCCCCCHHHHhhhc
Q 030050 103 ILDDGYRWRKYGQKAVKDNKFPRSYYRCTH-----EGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQL 177 (183)
Q Consensus 103 ~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-----~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~~~t~n~~~~l~~~ 177 (183)
+---||.|||= .-.+.--|-.|+.|+. -.-|+-|.+...+.-|.-++++- --|.||+.=++||
T Consensus 27 p~r~gw~wr~~---~~~~~~~~~~y~~~s~~l~~~~~lp~~~~~~~~~~~p~~~i~~~---------vAtG~~~~Di~~~ 94 (763)
T 3kp1_A 27 PKRRGWTWRQP---AENLQMGPFIYKDASTPLENSVALPSAKYFGDIDPQPLPVITTE---------IASGRFEDDIRRM 94 (763)
T ss_dssp CSCCSCCCCCB---CTTEEETTEEESSEECCCSSCCCCGGGGGGTTCCCEESSEEEEE---------CCCSCHHHHHHHH
T ss_pred cccCCcccccc---CCCCCcCCcchhhhchhhhcCCCCchHHHHhhcCCCCCCEEEEE---------EecCchHHHHHHH
Confidence 34579999972 2222233558889986 24467777776533333444432 3567888888888
Q ss_pred c
Q 030050 178 Q 178 (183)
Q Consensus 178 ~ 178 (183)
|
T Consensus 95 ~ 95 (763)
T 3kp1_A 95 R 95 (763)
T ss_dssp H
T ss_pred H
Confidence 7
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=11.18 E-value=58 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=18.6
Q ss_pred CCCchhhccCcee--------cc--CCCCCCceeecc
Q 030050 105 DDGYRWRKYGQKA--------VK--DNKFPRSYYRCT 131 (183)
Q Consensus 105 dDGy~WRKYGQK~--------ik--gs~~pRsYYrCt 131 (183)
.+++.|.|-|... +. ...-||.+|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5678899887642 22 344589999993
No 8
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=10.82 E-value=77 Score=24.95 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=24.4
Q ss_pred cccceeeecCCCCEEEEEEec--cCCCCCCCCCCCHHHHhhhccccC
Q 030050 137 VKKQVQRLTNDEGIVVTTYEG--MHNHRIEKPTDNFEHILNQLQIYT 181 (183)
Q Consensus 137 akKqVqr~~~D~~~~~ttY~G--~HnHp~~~~t~n~~~~l~~~~~~~ 181 (183)
..|.|.|...-|-++.+-|.- .|.+...=..++... ..+||||
T Consensus 16 ~~~~idRektcPfLLRvF~~~ng~hh~~~eF~~~~~P~--~ElQIYT 60 (143)
T 4a6q_A 16 PEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPS--SELQIYT 60 (143)
T ss_dssp CCCCCCGGGSCCEEEEEEEESSSSCCCGGGGCTTCCCS--CCEEEEE
T ss_pred CCCCccccCCCCeEEEEEecCCCCCCCHHHccCCCCCC--ceeEEee
Confidence 456677766667788888874 564432211112111 3589997
No 9
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=10.18 E-value=47 Score=28.88 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=8.5
Q ss_pred CCchhhccCce
Q 030050 106 DGYRWRKYGQK 116 (183)
Q Consensus 106 DGy~WRKYGQK 116 (183)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
No 10
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=10.04 E-value=47 Score=28.95 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=8.6
Q ss_pred CCchhhccCce
Q 030050 106 DGYRWRKYGQK 116 (183)
Q Consensus 106 DGy~WRKYGQK 116 (183)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 46899999864
Done!