Query 030052
Match_columns 183
No_of_seqs 113 out of 451
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4adx_I AIF6; ribosome, protein 100.0 1.7E-54 5.7E-59 361.5 23.0 175 2-181 46-221 (222)
2 4a18_J EIF6, translation initi 100.0 2.8E-53 9.5E-58 358.1 16.4 180 1-180 4-183 (248)
3 1g62_A Ribosome anti-associati 100.0 4.5E-53 1.5E-57 352.7 15.9 180 1-180 1-180 (224)
4 4adx_I AIF6; ribosome, protein 100.0 2.9E-50 1E-54 335.9 23.6 175 1-180 1-175 (222)
5 1g61_A EIF-6, translation init 100.0 8.4E-52 2.9E-56 346.3 14.1 178 1-180 3-228 (228)
6 1g62_A Ribosome anti-associati 100.0 6.7E-47 2.3E-51 315.5 12.9 173 2-179 48-224 (224)
7 4a18_J EIF6, translation initi 100.0 1.1E-44 3.9E-49 305.6 11.6 174 3-181 52-229 (248)
8 1g61_A EIF-6, translation init 100.0 4.2E-29 1.4E-33 208.9 9.0 125 8-135 102-227 (228)
9 3i4a_A N(G),N(G)-dimethylargin 62.6 67 0.0023 26.8 10.9 121 14-138 152-281 (308)
10 1jdw_A L-arginine\:glycine ami 48.5 93 0.0032 27.3 9.1 112 23-139 264-392 (423)
11 2jer_A Agmatine deiminase; hyd 33.2 86 0.003 27.4 6.3 98 82-179 72-200 (389)
12 2zjr_Q 50S ribosomal protein L 30.7 35 0.0012 24.1 2.8 27 113-139 25-52 (95)
13 1xkn_A Putative peptidyl-argin 29.2 1.6E+02 0.0053 25.4 7.2 108 28-138 182-323 (355)
14 3i4a_A N(G),N(G)-dimethylargin 29.0 2.5E+02 0.0084 23.3 11.1 112 62-175 103-226 (308)
15 1h70_A NG, NG-dimethylarginine 28.7 2.1E+02 0.0072 22.6 7.6 98 30-139 134-235 (255)
16 1jdw_A L-arginine\:glycine ami 25.2 1.8E+02 0.0063 25.3 7.1 78 14-98 306-394 (423)
17 1vq8_S 50S ribosomal protein L 23.2 81 0.0028 21.7 3.5 49 70-141 5-54 (85)
18 2ewo_A Putative agmatine deimi 23.2 1.3E+02 0.0043 26.2 5.5 89 91-179 85-204 (377)
19 2gez_B L-asparaginase beta sub 22.7 31 0.0011 25.8 1.4 50 105-173 11-60 (133)
20 2ewo_A Putative agmatine deimi 22.3 1.3E+02 0.0045 26.1 5.4 106 75-180 135-258 (377)
21 2nrr_A Uvrabc system protein C 21.9 68 0.0023 24.8 3.2 35 125-159 3-45 (159)
22 3r8s_T 50S ribosomal protein L 21.6 58 0.002 22.8 2.5 26 114-139 31-57 (93)
23 3tve_T 50S ribosomal protein L 21.5 83 0.0028 21.9 3.3 26 114-139 25-51 (92)
24 3j21_T 50S ribosomal protein L 21.0 95 0.0032 21.4 3.5 52 68-142 4-56 (86)
25 2nrt_A Uvrabc system protein C 20.0 1.2E+02 0.0041 24.5 4.4 38 122-159 5-50 (220)
No 1
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.7e-54 Score=361.52 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=166.3
Q ss_pred ceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHH
Q 030052 2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQEL 81 (183)
Q Consensus 2 ~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~ 81 (183)
++|++|+||++||+|+++||+++|+|+.+++++++.|++ ++ |++.+++ ++++++||++++||+|+||||.++++|+
T Consensus 46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~ 121 (222)
T 4adx_I 46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL 121 (222)
T ss_pred EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence 489999999999999999999999999999999999999 47 8898888 9999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceEE
Q 030052 82 QHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGL 160 (183)
Q Consensus 82 ~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~l 160 (183)
+.|+|.|++++...++ ++++++||.+++||+||||||+++++|+++|+|+||||+.+||+ +|.|+|||++||||+|++
T Consensus 122 e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~l 200 (222)
T 4adx_I 122 QVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVL 200 (222)
T ss_pred HHHHHhhCccEEEEec-CCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEE
Confidence 9999999855544444 67999999999999999999999999999999999999999999 799999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhcccc
Q 030052 161 VRHRISSSRHLLKHFLLQCIS 181 (183)
Q Consensus 161 V~~~tt~~El~~i~~~l~~~~ 181 (183)
|||+||++||+|||++|+|+.
T Consensus 201 vg~~TT~~El~~ie~~f~~~~ 221 (222)
T 4adx_I 201 VGEETTGPELARIEEALGFLE 221 (222)
T ss_pred ECCCCCHHHHHHHHHHhcccc
Confidence 999999999999999999974
No 2
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=2.8e-53 Score=358.14 Aligned_cols=180 Identities=63% Similarity=0.974 Sum_probs=177.5
Q ss_pred CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (183)
Q Consensus 1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e 80 (183)
|+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+..+++++++|++++++|.|++||+||+|||+.++|+|
T Consensus 4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E 83 (248)
T 4a18_J 4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE 83 (248)
T ss_dssp CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence 89999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (183)
Q Consensus 81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l 160 (183)
+++|+++|+.++++.+++.+++|+||.++|||++||+||+++++..+.|+|+|||||+++||+|.++|||.+++||+|+|
T Consensus 84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L 163 (248)
T 4a18_J 84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL 163 (248)
T ss_dssp HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhccc
Q 030052 161 VRHRISSSRHLLKHFLLQCI 180 (183)
Q Consensus 161 V~~~tt~~El~~i~~~l~~~ 180 (183)
|||+++++|+++|+++|++-
T Consensus 164 Vhp~~s~eEl~~L~~~l~V~ 183 (248)
T 4a18_J 164 VHPLASVEELDELANLLQIP 183 (248)
T ss_dssp ECTTCCHHHHHHHHHHHTSC
T ss_pred ECCCCCHHHHHHHHHHhCCc
Confidence 99999999999999999864
No 3
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=4.5e-53 Score=352.66 Aligned_cols=180 Identities=70% Similarity=1.067 Sum_probs=177.5
Q ss_pred CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (183)
Q Consensus 1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e 80 (183)
|+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+..+++++++|++|+++|.|++||+||+|||+.++|+|
T Consensus 1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (224)
T 1g62_A 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE 80 (224)
T ss_dssp CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (183)
Q Consensus 81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l 160 (183)
+++|+++|+.+++|.+++.+++++||.++|||++||+||+++++..+.|+|+|||||+++||+|.++|||.+++||||+|
T Consensus 81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L 160 (224)
T 1g62_A 81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL 160 (224)
T ss_dssp HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhccc
Q 030052 161 VRHRISSSRHLLKHFLLQCI 180 (183)
Q Consensus 161 V~~~tt~~El~~i~~~l~~~ 180 (183)
|||+++++|+++|+++|++-
T Consensus 161 VhP~~s~ee~~~i~d~L~V~ 180 (224)
T 1g62_A 161 VHPQTSVQDQEELSSLLQVP 180 (224)
T ss_dssp ECTTCCHHHHHHHHHHHTSC
T ss_pred ECCCCCHHHHHHHHHHhCCc
Confidence 99999999999999999863
No 4
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.9e-50 Score=335.87 Aligned_cols=175 Identities=32% Similarity=0.472 Sum_probs=171.1
Q ss_pred CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (183)
Q Consensus 1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e 80 (183)
|+.|++|+||++||+|+++||+|||+|++.+++.++.+++.|+ ++++++++++++.+|.|+++|+||+|||+.++++|
T Consensus 1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e 78 (222)
T 4adx_I 1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE 78 (222)
T ss_pred CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (183)
Q Consensus 81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l 160 (183)
+++|++. ++++.+++++++++||+++|||+||++||+++++|++.|+|+|||+|+++++++.+.|||.+++||||+|
T Consensus 79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l 155 (222)
T 4adx_I 79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL 155 (222)
T ss_pred HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence 9999994 4888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhccc
Q 030052 161 VRHRISSSRHLLKHFLLQCI 180 (183)
Q Consensus 161 V~~~tt~~El~~i~~~l~~~ 180 (183)
|||++|++|+++|+++||+-
T Consensus 156 VhP~~s~ee~~~i~~~L~V~ 175 (222)
T 4adx_I 156 LNPQASSEEIGIIEDTLGVE 175 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999863
No 5
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=8.4e-52 Score=346.28 Aligned_cols=178 Identities=28% Similarity=0.390 Sum_probs=166.6
Q ss_pred CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (183)
Q Consensus 1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e 80 (183)
|+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+ ++++++++++++.+|.|+++|++|+|||+.++++|
T Consensus 3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e 80 (228)
T 1g61_A 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE 80 (228)
T ss_dssp CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhC---CCCeEEEEecCCccceeeEEE-------------------------------------------EeCce
Q 030052 81 LQHLRNSL---PDQVVVQRIEERLSALGNCIA-------------------------------------------CNDHV 114 (183)
Q Consensus 81 ~~~i~~~L---~~~v~v~~~~~~~~avGn~iv-------------------------------------------aNd~g 114 (183)
++.|++.| +.++++.+++++.+++||+++ ++|+|
T Consensus 81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~G 160 (228)
T 1g61_A 81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKG 160 (228)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGGGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSSE
T ss_pred HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHHHHHHHHHHHhcCCceEEEEeCCccceeeEEEEecce
Confidence 99999987 456777777777777777774 34488
Q ss_pred eEEccCCCHHHHHHHHhhhCee-EEEEee-cCcccceeEEEEcCceEEecCCCCHHHHHHHHHhhccc
Q 030052 115 ALAHTDLDRETEEIIADVLGVE-VFRQTI-AGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCI 180 (183)
Q Consensus 115 alv~p~~s~~el~~I~dvL~Ve-v~~gti-~G~~~VGs~~vann~G~lV~~~tt~~El~~i~~~l~~~ 180 (183)
|||||+++++|+++|+|+|||| +.+||+ +|.|+||||+||||+|++|||+||++|+++||++|+++
T Consensus 161 ~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v~ 228 (228)
T 1g61_A 161 CLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGLI 228 (228)
T ss_dssp EEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC-
T ss_pred EEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhccC
Confidence 8889999999999999999999 999999 69999999999999999999999999999999999975
No 6
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=6.7e-47 Score=315.48 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=162.4
Q ss_pred ceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCc--ccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHH
Q 030052 2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 79 (183)
Q Consensus 2 ~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~--v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~ 79 (183)
+++++|+||+.+|.|+++|++++|+|+.+.++|++.||+.|... |.+++ .+.+++|+++++||+++||||.++++
T Consensus 48 vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~V~~~~---~~~~aiGn~i~~ND~~alV~p~l~~e 124 (224)
T 1g62_A 48 IVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVE---ERLSALGNVICCNDYVALVHPDIDRE 124 (224)
T ss_dssp EEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHSCTTSEEEEEC---CCSSCHHHHEEECSSEEEECTTCCHH
T ss_pred EEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhhCCCCceEEEEC---CcCcceeEEEEEcCcEEEECCCCCHH
Confidence 37899999999999999999999999999999999999986433 44555 45599999999999999999999999
Q ss_pred HHHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCc
Q 030052 80 ELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNR 157 (183)
Q Consensus 80 e~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~ 157 (183)
..+.|+|.|+ |++.+.+ ++...+|+..++||+||||||+++++|+++|+|+||||+.+||+ +|.++|||++||||+
T Consensus 125 ~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~ 202 (224)
T 1g62_A 125 TEELISDVLG--VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDY 202 (224)
T ss_dssp HHHHHHHHHT--SEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSS
T ss_pred HHHHHHHhhC--CcEEEEEecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECC
Confidence 9999999997 7777776 99999999999999999999999999999999999999999999 999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHhhcc
Q 030052 158 GGLVRHRISSSRHLLKHFLLQC 179 (183)
Q Consensus 158 G~lV~~~tt~~El~~i~~~l~~ 179 (183)
|++|||+||++|+++||++|++
T Consensus 203 G~lvg~~TT~~El~~Ie~~f~v 224 (224)
T 1g62_A 203 LAVTGLDTTAPELSVIESIFRL 224 (224)
T ss_dssp CEEEETTCCHHHHHHHHHHTTC
T ss_pred EEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999985
No 7
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=1.1e-44 Score=305.65 Aligned_cols=174 Identities=15% Similarity=0.133 Sum_probs=163.0
Q ss_pred eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcc--cEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (183)
Q Consensus 3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v--~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e 80 (183)
++++|+||+.+|.|+++|++++|||+.+.++|++.||+.|+..+ .+++ .+.+++||++++||+++||||.++++.
T Consensus 52 v~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~~~---~r~~alGn~i~aND~~ALV~pdl~~e~ 128 (248)
T 4a18_J 52 IHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIE---EKLSALGNCVVANDYVALIHPDLDRES 128 (248)
T ss_dssp EEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHHSCTTSEEEECC---CSSCCHHHHEEECSSEEEECSSCCHHH
T ss_pred EEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhhCCCCceEEEeC---CccccceEEEEEcCcEEEECCCCCHHH
Confidence 78999999999999999999999999999999999999985334 4555 455999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCce
Q 030052 81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRG 158 (183)
Q Consensus 81 ~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G 158 (183)
.+.|+|.|+ |++.+.+ ++.+.+|+.+++||+|+||||.++++|+++|+++|+|++.+||+ +|.++|||+++|||+|
T Consensus 129 ~e~I~d~Lg--VeV~~~tIags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~G 206 (248)
T 4a18_J 129 EEIIADTLG--VEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWA 206 (248)
T ss_dssp HHHHHHHHT--CEEEECCBTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTE
T ss_pred HHHHHHhcC--CcEEEEEcCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCe
Confidence 999999997 6676666 99999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEecCCCCHHHHHHHHHhhcccc
Q 030052 159 GLVRHRISSSRHLLKHFLLQCIS 181 (183)
Q Consensus 159 ~lV~~~tt~~El~~i~~~l~~~~ 181 (183)
++|||+||++|+++||++|++..
T Consensus 207 alVg~~tT~~El~~Ie~~l~v~~ 229 (248)
T 4a18_J 207 AFCGLDTTSTEISVVENIFKLNE 229 (248)
T ss_dssp EEEETTCCHHHHHHHHHHTTCC-
T ss_pred EEECCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999864
No 8
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=99.95 E-value=4.2e-29 Score=208.90 Aligned_cols=125 Identities=21% Similarity=0.267 Sum_probs=118.4
Q ss_pred eCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHHHHHhh
Q 030052 8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (183)
Q Consensus 8 ~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~~i~~~ 87 (183)
.+++.+|+++++||+++|+||++ ++..+.|+|+|+ +++.+.++++...+|..++.+|+|+||||.++++|++.|++.
T Consensus 102 ~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~--veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~ 178 (228)
T 1g61_A 102 SKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN--VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSL 178 (228)
T ss_dssp CSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHC--SEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHH
T ss_pred CCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcC--CceEEEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHh
Confidence 48999999999999999999999 899999999999 999998898888888888888899999999999999999999
Q ss_pred CCCC-eEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCe
Q 030052 88 LPDQ-VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 135 (183)
Q Consensus 88 L~~~-v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~V 135 (183)
|+++ +..++++.+.+.+|+.++|||||++|||++|++|+++|+++|||
T Consensus 179 L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 179 FKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp HTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred cCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence 9988 77788888999999999999999999999999999999999997
No 9
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=62.63 E-value=67 Score=26.81 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=70.1
Q ss_pred eeEEEeeCCEEE-EcCCCChhHHHHHHHHh-CCcccEEEEee-cCceEEEeEEEeeCCeEEeCCC-CCHHHHHHHHhhCC
Q 030052 14 GVFSKLTNAFCL-VAIGGSESFYSTFEAEL-ADVIPVVKTSI-GGNRIIGRLCVGNKNGLLLPHT-TTDQELQHLRNSLP 89 (183)
Q Consensus 14 G~~~~~Nd~~~L-vp~~i~~~~~~~i~~~L-~~~v~vv~~~i-~~s~~vG~li~~N~~G~lV~~~-~~~~e~~~i~~~L~ 89 (183)
|-++..++..++ ++.-.+++-.+.+++.| + .+++...+ .-.-+=..++....+-+++.|. ..++.++.+++...
T Consensus 152 GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~--~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~ 229 (308)
T 3i4a_A 152 GDVLFTGREFFVGLSKRTNQRGAEILADTFKD--YAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSD 229 (308)
T ss_dssp GGEEECSSCEEEEESSSCCHHHHHHHHHHTTT--SCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCS
T ss_pred ceEEEECCEEEEEEchhcCHHHHHHHHHHcCC--CeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhcc
Confidence 566666655332 35556677889999998 6 45544332 2233444556655666666554 45566777876432
Q ss_pred CCeEEEEecCCccceeeEEEEe-Cc--eeEEccC--CCHHHHHHHHhhhCeeEE
Q 030052 90 DQVVVQRIEERLSALGNCIACN-DH--VALAHTD--LDRETEEIIADVLGVEVF 138 (183)
Q Consensus 90 ~~v~v~~~~~~~~avGn~ivaN-d~--galv~p~--~s~~el~~I~dvL~Vev~ 138 (183)
.+.++..++.. ..+|++.+| +. +.+++|. -.....+.++..-|.++.
T Consensus 230 ~~~~iI~vpe~--~a~N~L~ln~~~~~~vvi~~~~~~~p~~~~~l~~l~g~~vi 281 (308)
T 3i4a_A 230 HRYDKLTVPDD--IAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLI 281 (308)
T ss_dssp SCCEEEEESSG--GGGCCEEEEETTTEEEEEEECTTTCHHHHHHHHHCTTEEEE
T ss_pred CCCEEEECChH--HhCCEEEEccCCCCCEEEecCcccCcccHHHHHhcCCCEEE
Confidence 34666666542 667878787 32 6888763 333455555543266644
No 10
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=48.53 E-value=93 Score=27.25 Aligned_cols=112 Identities=7% Similarity=0.002 Sum_probs=70.8
Q ss_pred EEEEcCC--CChhHHHHHHHHhCCcccEEEEeecC---ceEEEeEEEeeCCeEEeCCCCCHHHHHHHHhhCCCCeEEEEe
Q 030052 23 FCLVAIG--GSESFYSTFEAELADVIPVVKTSIGG---NRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI 97 (183)
Q Consensus 23 ~~Lvp~~--i~~~~~~~i~~~L~~~v~vv~~~i~~---s~~vG~li~~N~~G~lV~~~~~~~e~~~i~~~L~~~v~v~~~ 97 (183)
.+++-.. .+++.++.+++.|+...+++-..... .-+=..+.....+-+++++...++.++.|++. +.++..+
T Consensus 264 ~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~---~~~iI~~ 340 (423)
T 1jdw_A 264 DIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA---GWTIITP 340 (423)
T ss_dssp EEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT---TCEEECC
T ss_pred EEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC---CCEEEEC
Confidence 5555433 35677889999994114444443332 11224556667777888888777777788765 3566666
Q ss_pred cC-Ccc-----------ceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEE
Q 030052 98 EE-RLS-----------ALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFR 139 (183)
Q Consensus 98 ~~-~~~-----------avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~ 139 (183)
+. ... .-.|.+..|. +.++-|.-.....+.+++. |.+|..
T Consensus 341 p~~~~~~~~~~~~s~~~~~~N~L~inp-g~VI~~~~~~~~~~~L~~~-G~~Vi~ 392 (423)
T 1jdw_A 341 PTPIIPDDHPLWMSSKWLSMNVLMLDE-KRVMVDANEVPIQKMFEKL-GITTIK 392 (423)
T ss_dssp CCCCCCTTSCCSSSCGGGGGCCEEEET-TEEEEETTCHHHHHHHHHT-TCEEEE
T ss_pred CCchhccccccccccccceeeEEEECC-CEEEEeCCCHHHHHHHHHC-CCEEEE
Confidence 52 211 2567787875 5555677788899999986 877554
No 11
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=33.18 E-value=86 Score=27.41 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHhhCCCCeEEEEecCCccc---eeeEEEEeCce--eEEc----------------cCCCHHHHHHHHhhhCeeEEE-
Q 030052 82 QHLRNSLPDQVVVQRIEERLSA---LGNCIACNDHV--ALAH----------------TDLDRETEEIIADVLGVEVFR- 139 (183)
Q Consensus 82 ~~i~~~L~~~v~v~~~~~~~~a---vGn~ivaNd~g--alv~----------------p~~s~~el~~I~dvL~Vev~~- 139 (183)
+..++.|+..|++..++..-.. .|-..+.|++| +.+. -+.++.-.+.+.+.+|+++.+
T Consensus 72 ~~a~~~l~~~V~~~~~~~~D~W~RD~GP~~v~~~~g~~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~~~~~~~g~~~~~~ 151 (389)
T 2jer_A 72 QNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRT 151 (389)
T ss_dssp HHHHHHSCTTSEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEE
T ss_pred HHHHHHccCCcEEEEcCCCCEecccccceEEecCCCCEEEEEeecccccccccccccCccchHHHHHHHHHHcCCCeEec
Confidence 4566666545777666543333 46666666655 2222 245556677888899999766
Q ss_pred Ee--e--cCcccceeEEEEcCceEEecCC----CCHHHH-HHHHHhhcc
Q 030052 140 QT--I--AGNILVGSYCSFSNRGGLVRHR----ISSSRH-LLKHFLLQC 179 (183)
Q Consensus 140 gt--i--~G~~~VGs~~vann~G~lV~~~----tt~~El-~~i~~~l~~ 179 (183)
.. + +++-+-|-|-+++...++++|+ .|.+|+ ..|.+.|+.
T Consensus 152 ~~~vlEGGsi~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv 200 (389)
T 2jer_A 152 DDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNV 200 (389)
T ss_dssp EEEECCGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEccCcEEECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCC
Confidence 33 3 4455667777777777776653 489999 788888874
No 12
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=30.66 E-value=35 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.2
Q ss_pred ceeEEccCCCHHHHH-HHHhhhCeeEEE
Q 030052 113 HVALAHTDLDRETEE-IIADVLGVEVFR 139 (183)
Q Consensus 113 ~galv~p~~s~~el~-~I~dvL~Vev~~ 139 (183)
....|+|+++..|++ .+|..|+|+|..
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~ 52 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIG 52 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSE
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceE
Confidence 456799999999987 678899999654
No 13
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=29.17 E-value=1.6e+02 Score=25.39 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCChhHH-HHHHHHhCCccc-EEEEe------ecCceEEEeEEEeeCCeEEeCCC--CCH----------HHHHHHHhh
Q 030052 28 IGGSESFY-STFEAELADVIP-VVKTS------IGGNRIIGRLCVGNKNGLLLPHT--TTD----------QELQHLRNS 87 (183)
Q Consensus 28 ~~i~~~~~-~~i~~~L~~~v~-vv~~~------i~~s~~vG~li~~N~~G~lV~~~--~~~----------~e~~~i~~~ 87 (183)
|..+++++ +.|++.|| ++ ++-.. ....-+=+.....+.+-++++.. ..+ ++++..+++
T Consensus 182 p~ls~~~ie~~L~~~LG--~~~viwL~~Gl~~DdtdgHiD~~arfv~p~~vl~~~~~d~~d~~y~~~~~~~~~L~~~~da 259 (355)
T 1xkn_A 182 PSLGKAEIEAQLRRYLG--IEKVLWLGDGIAGDDTDGHVDDMARFVNENTVVIAVEEDPEDENYKPLRENYELLKTMTGL 259 (355)
T ss_dssp TTCCHHHHHHHHHHHHC--CSEEEEECCCCTTCTTSSCGGGTEEEEETTEEEEECCCCTTSTTHHHHHHHHHHHTTCBCT
T ss_pred CCCCHHHHHHHHHHHcC--CcEEEEeCCccCCCCCCcchhheeEeeCCCEEEEEcCCCCCCccHHHHHHHHHHHHhhhhc
Q ss_pred CCCCeEEEEec-CCc--------cceeeEEEEeCceeEEccCCCHH----HHHHHHhhh-CeeEE
Q 030052 88 LPDQVVVQRIE-ERL--------SALGNCIACNDHVALAHTDLDRE----TEEIIADVL-GVEVF 138 (183)
Q Consensus 88 L~~~v~v~~~~-~~~--------~avGn~ivaNd~galv~p~~s~~----el~~I~dvL-~Vev~ 138 (183)
-|-++++..++ .+. .+.....+.-|.+.++ |.+.++ .++.+++.| +.+|.
T Consensus 260 ~Gr~~~ii~lp~p~~~~~~g~rl~asY~Nfli~Ng~Viv-P~fgd~~D~~A~~~L~~~fP~r~Vi 323 (355)
T 1xkn_A 260 DGKPLNIVKLPMPEPVYYDGERLPASYANFYIANTVVLV-PTYRCPRDQQAIDILQQCFPKREVV 323 (355)
T ss_dssp TSCBCEEEEECCCSCCEETTEECCCCTTCCEECSSEEEE-EECSSTHHHHHHHHHHHHCTTSEEE
T ss_pred cCCceEEEEeCCCCccccCCCcccceeeEEEEECCEEEE-eeCCCcccHHHHHHHHHHCCCCEEE
No 14
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=28.96 E-value=2.5e+02 Score=23.26 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=71.7
Q ss_pred EEEeeCCeEEeCCCCCH---HHHHHHHhhCC-CCeEEEEec---CCccceeeEEEEeCceeEE--ccCCCHHHHHHHHhh
Q 030052 62 LCVGNKNGLLLPHTTTD---QELQHLRNSLP-DQVVVQRIE---ERLSALGNCIACNDHVALA--HTDLDRETEEIIADV 132 (183)
Q Consensus 62 li~~N~~G~lV~~~~~~---~e~~~i~~~L~-~~v~v~~~~---~~~~avGn~ivaNd~galv--~p~~s~~el~~I~dv 132 (183)
..+.=.+|+++.|...+ .|...+++.|. .+.++.... .-+-. |.++..++. .++ +..++.+-++++++.
T Consensus 103 ~~~vi~~~vii~~m~~~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~lEG-GDvl~~g~~-v~vG~s~RTn~~gi~~l~~~ 180 (308)
T 3i4a_A 103 VAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDG-GDVLFTGRE-FFVGLSKRTNQRGAEILADT 180 (308)
T ss_dssp GEEEETTEEEECCCSSGGGGGGHHHHHHHHHTTTCEEEECCCTTCCCCG-GGEEECSSC-EEEEESSSCCHHHHHHHHHH
T ss_pred eEEEECCEEEEeCCCchhhhhhHHHHHHHHHHCCCeEEEccCCCCcCcc-ceEEEECCE-EEEEEchhcCHHHHHHHHHH
Confidence 33344567888887543 23344444442 135565543 24445 888888766 555 677999999999999
Q ss_pred h-CeeEEEEee-cCcccceeEEEEcCceEEecCCCCHH-HHHHHHH
Q 030052 133 L-GVEVFRQTI-AGNILVGSYCSFSNRGGLVRHRISSS-RHLLKHF 175 (183)
Q Consensus 133 L-~Vev~~gti-~G~~~VGs~~vann~G~lV~~~tt~~-El~~i~~ 175 (183)
| +.+|..-.+ .-..+=....++...-++++|+.-.. .++++++
T Consensus 181 l~~~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~ 226 (308)
T 3i4a_A 181 FKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQ 226 (308)
T ss_dssp TTTSCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHh
Confidence 9 766655444 44555566677788889999875433 3566665
No 15
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=28.73 E-value=2.1e+02 Score=22.64 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHh---CCcccEEEEeecC-ceEEEeEEEeeCCeEEeCCCCCHHHHHHHHhhCCCCeEEEEecCCcccee
Q 030052 30 GSESFYSTFEAEL---ADVIPVVKTSIGG-NRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALG 105 (183)
Q Consensus 30 i~~~~~~~i~~~L---~~~v~vv~~~i~~-s~~vG~li~~N~~G~lV~~~~~~~e~~~i~~~L~~~v~v~~~~~~~~avG 105 (183)
.+++-.+.+++.| | .+++...... .-+=..+.....+-++++|...+++ .++ +.++..++..-..-.
T Consensus 134 t~~~~~~~l~~~l~~~g--~~vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~--~~~-----~~~ii~~~~~e~~~~ 204 (255)
T 1h70_A 134 TNAEGARQMIAILEKHG--LSGSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKP--EFQ-----DFNIIEIPEEESYAA 204 (255)
T ss_dssp SCHHHHHHHHHHHHHTT--CEEEEEECSSSSSGGGSEEECSTTEEEECGGGTTCG--GGT-----TSEEEECCGGGGGGG
T ss_pred CcHHHHHHHHHHHhhCC--CEEEEEECCCCcchhheeeecCCCEEEEECCcCCHh--HhC-----ceEEEECCCcccccc
Confidence 4567789999999 8 6665554432 2233345545666677777654432 222 367777763234566
Q ss_pred eEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEE
Q 030052 106 NCIACNDHVALAHTDLDRETEEIIADVLGVEVFR 139 (183)
Q Consensus 106 n~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~ 139 (183)
|.+..| |.++-|...+...+.+++. |.++..
T Consensus 205 N~l~i~--~~Vi~~~~~~~~~~~l~~~-g~~vi~ 235 (255)
T 1h70_A 205 NCIWVN--ERVIMPAGYPRTREKIARL-GYRVIE 235 (255)
T ss_dssp CCEEET--TEEEEESSCHHHHHHHHTT-TCEEEE
T ss_pred cEEEEC--CEEEeCCCCHHHHHHHHHC-CCeEEE
Confidence 777777 6788888888888888876 887654
No 16
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=25.17 E-value=1.8e+02 Score=25.31 Aligned_cols=78 Identities=4% Similarity=0.033 Sum_probs=53.5
Q ss_pred eeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCc-----------eEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052 14 GVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGN-----------RIIGRLCVGNKNGLLLPHTTTDQELQ 82 (183)
Q Consensus 14 G~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s-----------~~vG~li~~N~~G~lV~~~~~~~e~~ 82 (183)
.+|.....+.+++.+...++..+.|++. + .++++...... .+-.|+...|.+.+|+|. -...-.+
T Consensus 306 tv~~~v~~~~vlv~~~~~~~~~~~L~~~-~--~~iI~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~-~~~~~~~ 381 (423)
T 1jdw_A 306 ATFNIIGPGIVLSNPDRPCHQIDLFKKA-G--WTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDA-NEVPIQK 381 (423)
T ss_dssp TTEEEEETTEEEECTTSCBTTHHHHHHT-T--CEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEET-TCHHHHH
T ss_pred heEEecCCCeEEEecchhHHHHHHHHhC-C--CEEEECCCchhccccccccccccceeeEEEECCCEEEEeC-CCHHHHH
Confidence 4677788888888888777778888764 5 66776543222 135788888876666665 4566778
Q ss_pred HHHhhCCCCeEEEEec
Q 030052 83 HLRNSLPDQVVVQRIE 98 (183)
Q Consensus 83 ~i~~~L~~~v~v~~~~ 98 (183)
.|++. | .+|..++
T Consensus 382 ~L~~~-G--~~Vi~v~ 394 (423)
T 1jdw_A 382 MFEKL-G--ITTIKVN 394 (423)
T ss_dssp HHHHT-T--CEEEEEC
T ss_pred HHHHC-C--CEEEEec
Confidence 88877 4 6666654
No 17
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.21 E-value=81 Score=21.67 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=35.3
Q ss_pred EEeCCCCCHHHHHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHH-HHHhhhCeeEEEEe
Q 030052 70 LLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEE-IIADVLGVEVFRQT 141 (183)
Q Consensus 70 ~lV~~~~~~~e~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~-~I~dvL~Vev~~gt 141 (183)
.|..|.+|+.-.+.+++. |-....|+|+++..|++ .+|..|+|+|.+-.
T Consensus 5 iIk~P~iTEKa~~~~e~~-----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 5 VIKHPHVTEKAMNDMDFQ-----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SEEEECCSHHHHHHHHHS-----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred eeeccccCHHHHHHHHhC-----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 466778888777766642 11245789999999987 57889999976643
No 18
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=23.20 E-value=1.3e+02 Score=26.20 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=55.6
Q ss_pred CeEEEEecCCccc---eeeEEEEeCce--eEEc----------------cCCCHHHHHHHHhhhCeeEEE-Ee--e--cC
Q 030052 91 QVVVQRIEERLSA---LGNCIACNDHV--ALAH----------------TDLDRETEEIIADVLGVEVFR-QT--I--AG 144 (183)
Q Consensus 91 ~v~v~~~~~~~~a---vGn~ivaNd~g--alv~----------------p~~s~~el~~I~dvL~Vev~~-gt--i--~G 144 (183)
.|.+..++..-.. .|-..+.|++| +.+. -+.++.-.+.+.+.+|+++.+ .. + ++
T Consensus 85 ~V~~~~~~~dD~W~RD~Gp~~v~~~~g~~~~vdf~FN~WG~~~~g~~~~~~~D~~v~~~~~~~~g~~~~~~~~~vlEGGs 164 (377)
T 2ewo_A 85 NIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLEGGS 164 (377)
T ss_dssp SEEEEECCCSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEEEEECCGGG
T ss_pred ceEEEEcCCCCEecccccceEEEcCCCCEEEEEeecccccccccccccCccchhHHHHHHHHHcCCCeEecCCeEEcCCc
Confidence 4666665532222 46666666655 2332 344455667777889999766 32 3 44
Q ss_pred cccceeEEEEcCceEEecC----CCCHHHH-HHHHHhhcc
Q 030052 145 NILVGSYCSFSNRGGLVRH----RISSSRH-LLKHFLLQC 179 (183)
Q Consensus 145 ~~~VGs~~vann~G~lV~~----~tt~~El-~~i~~~l~~ 179 (183)
+-.-|-|-+++...++++| ..|.+|+ ..|.+.|+.
T Consensus 165 i~~dG~GTlltTe~clLn~nRNp~lsk~eie~~Lk~~LG~ 204 (377)
T 2ewo_A 165 IHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNC 204 (377)
T ss_dssp EEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCC
T ss_pred eEECCCceEEEEcccccCCCCCCccCHHHHHHHHHHHcCC
Confidence 4455777777777777654 3489999 788888875
No 19
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding, hydrolase; 2.60A {Lupinus luteus}
Probab=22.71 E-value=31 Score=25.76 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=35.1
Q ss_pred eeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEEecCCCCHHHHHHH
Q 030052 105 GNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLK 173 (183)
Q Consensus 105 Gn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~lV~~~tt~~El~~i 173 (183)
||+..+++.|++.. |. +|.|+..|++|+|..|+|.|+..--- .+|.+.|.
T Consensus 11 G~iAaatSTgG~~~---------------K~---~GRVGDspiiGaG~yAd~~~a~s~TG-~GE~iir~ 60 (133)
T 2gez_B 11 GNLASATSTGGLVN---------------KM---VGRIGDTPLIGAGTYANELCAVSATG-KGEEIIRA 60 (133)
T ss_dssp CCEEEEEEECCSTT---------------BC---TTEECSTTSBTTTEEECSSEEEEEEE-CHHHHHHT
T ss_pred CCEEEEECCCCcCC---------------Cc---CCEecCCCcccceeEEcCCceEEeec-ChHHHHHH
Confidence 66666666666533 22 47899999999999999996665433 46666653
No 20
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=22.26 E-value=1.3e+02 Score=26.10 Aligned_cols=106 Identities=10% Similarity=-0.020 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHhhCCCCe-E-E-EEec-CCccceeeEEEEeCceeEEc----cCCCHHHH-HHHHhhhCee-EEEEe--e
Q 030052 75 TTTDQELQHLRNSLPDQV-V-V-QRIE-ERLSALGNCIACNDHVALAH----TDLDRETE-EIIADVLGVE-VFRQT--I 142 (183)
Q Consensus 75 ~~~~~e~~~i~~~L~~~v-~-v-~~~~-~~~~avGn~ivaNd~galv~----p~~s~~el-~~I~dvL~Ve-v~~gt--i 142 (183)
...+.-.+.+.+.++.++ . . .+++ +.+-.-|...+.....|+.+ |.+|++++ +.+++.||++ |.--- +
T Consensus 135 ~~D~~v~~~~~~~~g~~~~~~~~~vlEGGsi~~dG~GTlltTe~clLn~nRNp~lsk~eie~~Lk~~LG~~kvIWL~~gl 214 (377)
T 2ewo_A 135 DQDALVARKVCEIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGI 214 (377)
T ss_dssp TTHHHHHHHHHHTTTCCEEEEEEEECCGGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCS
T ss_pred cchhHHHHHHHHHcCCCeEecCCeEEcCCceEECCCceEEEEcccccCCCCCCccCHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 344455567777777664 2 1 2233 44445566556666667755 45699998 7899999998 32111 2
Q ss_pred cCccc----ceeEEEEcCceEEecC--CCCHHHHHHHHHhhccc
Q 030052 143 AGNIL----VGSYCSFSNRGGLVRH--RISSSRHLLKHFLLQCI 180 (183)
Q Consensus 143 ~G~~~----VGs~~vann~G~lV~~--~tt~~El~~i~~~l~~~ 180 (183)
.|-.+ =+-+..++..=++++. +.++|.-.+++++++.|
T Consensus 215 ~~DdTdgHiD~~arfv~p~~vl~~~~~d~~dp~y~~~~~~~~~L 258 (377)
T 2ewo_A 215 DPYETNGHIDDVACFIRPGEVACIYTDDKEHPFYQEAKAAYDFL 258 (377)
T ss_dssp CTTTTSSCSTTTEEEEETTEEEEBCCCCTTSTTHHHHHHHHHHH
T ss_pred CCCCCCCchhheeEEeCCCEEEEEecCCCCCccHHHHHHHHHHH
Confidence 22222 2356667777777776 55666666655555544
No 21
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=21.85 E-value=68 Score=24.76 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=23.4
Q ss_pred HHHHHHhhhCee--------EEEEeecCcccceeEEEEcCceE
Q 030052 125 TEEIIADVLGVE--------VFRQTIAGNILVGSYCSFSNRGG 159 (183)
Q Consensus 125 el~~I~dvL~Ve--------v~~gti~G~~~VGs~~vann~G~ 159 (183)
.++.+++.|+.+ .+...+.|...|||+.|+.+-+-
T Consensus 3 ~l~~L~~~L~L~~~P~RIE~fDiSh~~G~~~VasmVVf~~g~p 45 (159)
T 2nrr_A 3 ALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFP 45 (159)
T ss_dssp HHHHHHHHTTCSSCCCEEEEEEEECC---CCEEEEEEEETTEE
T ss_pred HHHHHHHHhCCCCCCCEEEEEECCccCCccceEEEEEEeCCcc
Confidence 456788888664 24455699999999999988553
No 22
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.60 E-value=58 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.5
Q ss_pred eeEEccCCCHHHHH-HHHhhhCeeEEE
Q 030052 114 VALAHTDLDRETEE-IIADVLGVEVFR 139 (183)
Q Consensus 114 galv~p~~s~~el~-~I~dvL~Vev~~ 139 (183)
...|+|+++..|++ .+|..|+|+|..
T Consensus 31 ~F~V~~~AnK~eIK~AVE~lf~VkV~~ 57 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKLFEVEVEV 57 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHHSCCCCCE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCceEE
Confidence 46789999999997 678899999654
No 23
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=21.53 E-value=83 Score=21.94 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=21.9
Q ss_pred eeEEccCCCHHHHH-HHHhhhCeeEEE
Q 030052 114 VALAHTDLDRETEE-IIADVLGVEVFR 139 (183)
Q Consensus 114 galv~p~~s~~el~-~I~dvL~Vev~~ 139 (183)
...|+|+++..|++ .+|..|+|+|..
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf~VkV~~ 51 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAFKVKVVK 51 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceee
Confidence 46789999999997 678899999765
No 24
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.97 E-value=95 Score=21.40 Aligned_cols=52 Identities=8% Similarity=0.227 Sum_probs=37.7
Q ss_pred CeEEeCCCCCHHHHHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHH-HHHhhhCeeEEEEee
Q 030052 68 NGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEE-IIADVLGVEVFRQTI 142 (183)
Q Consensus 68 ~G~lV~~~~~~~e~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~-~I~dvL~Vev~~gti 142 (183)
.-+|..|.+|+.-.+.+++. |-....|+|+++..+++ .+|..|+|+|.+-..
T Consensus 4 ~~iIk~P~iTEKa~~~~e~~-----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 4 YKVIIRPVVTEKAISLIEKE-----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp CCCEEECCCSHHHHHHHHTS-----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHhhhccccCHHHHHHHHhC-----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 34577888888877777643 12246789999999987 578899999776433
No 25
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.04 E-value=1.2e+02 Score=24.46 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.4
Q ss_pred CHHHHHHHHhhhCee--------EEEEeecCcccceeEEEEcCceE
Q 030052 122 DRETEEIIADVLGVE--------VFRQTIAGNILVGSYCSFSNRGG 159 (183)
Q Consensus 122 s~~el~~I~dvL~Ve--------v~~gti~G~~~VGs~~vann~G~ 159 (183)
....++.+++.|+.+ .+...+.|...|||+.|+.+-+-
T Consensus 5 ~~~~l~~L~~~l~l~~~p~rIE~fDiSh~~G~~~V~smVvf~~g~p 50 (220)
T 2nrt_A 5 RKEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFP 50 (220)
T ss_dssp CHHHHHHHHHHTTCSSCCCEEEEEEEEEETTTEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEECCccCCccceEEEEEEeCCcc
Confidence 346788899998765 24566799999999999988543
Done!