Query 030053
Match_columns 183
No_of_seqs 104 out of 449
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 3.1E-45 6.7E-50 289.1 16.6 151 27-177 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 7.7E-40 1.7E-44 256.4 15.9 146 20-165 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.5 3.5E-06 7.5E-11 63.9 13.3 138 25-171 5-143 (144)
4 PF05702 Herpes_UL49_5: Herpes 33.3 1.1E+02 0.0024 22.5 4.7 50 129-178 36-85 (98)
5 COG4291 Predicted membrane pro 27.1 2.9E+02 0.0062 23.2 6.6 63 3-87 2-64 (228)
6 PF06376 DUF1070: Protein of u 26.7 82 0.0018 18.7 2.5 16 106-121 13-28 (34)
7 PF07584 BatA: Aerotolerance r 21.2 1.1E+02 0.0023 20.8 2.7 23 20-42 53-75 (77)
8 COG3647 Predicted membrane pro 19.8 5E+02 0.011 21.2 6.9 29 132-163 169-197 (205)
9 COG3125 CyoD Heme/copper-type 17.4 4.5E+02 0.0098 19.7 11.1 23 26-48 20-42 (111)
10 PF06653 Claudin_3: Tight junc 17.0 2.8E+02 0.0061 21.6 4.6 31 20-50 91-121 (163)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=3.1e-45 Score=289.13 Aligned_cols=151 Identities=38% Similarity=0.590 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccceeEEEe--eEEEEEecchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccchhhh
Q 030053 27 ITLRILATAFSLAAVSLMITGTQTVLVFL--VQMKVTYSSSSAWRFLFGANIVTCILSVLSLIFVC-LISLSASHMKYFL 103 (183)
Q Consensus 27 l~LR~~a~~~sl~a~~vM~t~~q~~~~~~--~~~~a~f~~~~af~ylv~an~I~~~Ys~lql~~~~-~~~~~~~~~~~~~ 103 (183)
++||+++++++++|+++|+||+|+.++++ +++++||+|+++|+|+|++|+|+|+|+++|+++.+ .+.+++.+...|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 46999999999999999999999999987 89999999999999999999999999999999865 3444444466999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030053 104 LFLHDMVTMVLLISGCAAASAIGYVGKYGELKMGWGPVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHKL 177 (183)
Q Consensus 104 ~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~~sflA~~~~~~~s~iS~~~L 177 (183)
+|++||+++|+++||++||+++++++|+||+|.+|+|+|+++++||||+++|++++|+|++++++++++|++++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=7.7e-40 Score=256.36 Aligned_cols=146 Identities=39% Similarity=0.683 Sum_probs=135.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccceeEEEeeEEEEEecchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcC--C
Q 030053 20 KRFFVAQITLRILATAFSLAAVSLMITGTQTVLVFLVQMKVTYSSSSAWRFLFGANIVTCILSVLSLIFVC-LISLS--A 96 (183)
Q Consensus 20 r~~~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~a~f~~~~af~ylv~an~I~~~Ys~lql~~~~-~~~~~--~ 96 (183)
|..+..+++||+++++++++|+++|++|+|+.++.+++.+++|+|+++|+|++++|+|+|+|+++|++... .+.++ .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~ 80 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLR 80 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 45678899999999999999999999999999998899999999999999999999999999999999855 33332 2
Q ss_pred ccchhhhHhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccCCcchhhhhHHHHHHHHHHHHHH
Q 030053 97 SHMKYFLLFLHDMVTMVLLISGCAAASAIGYVGKYGELKMGWGPVCGFAPKFCNRSTISLVLSYLAFLC 165 (183)
Q Consensus 97 ~~~~~~~~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~~sflA~~~ 165 (183)
.+...|++|++||+++||++||++||+++++++++|+++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 267899999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.55 E-value=3.5e-06 Score=63.86 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeEEEeeEEEEEecchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccchhhh
Q 030053 25 AQITLRILATAFSLAAVSLMITGTQTVLVFLVQMKVTYSSSSAWRFLFGANIVTCILSVLSLIFVCLIS-LSASHMKYFL 103 (183)
Q Consensus 25 ~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~a~f~~~~af~ylv~an~I~~~Ys~lql~~~~~~~-~~~~~~~~~~ 103 (183)
...++|+++++++++.+.+++....+.. .......++..|.+.+.++...+++.-++...... ........+.
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGS------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWPLV 78 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccc------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 4679999999999999999998774221 11355667789999999999999877776533211 1111456788
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 030053 104 LFLHDMVTMVLLISGCAAASAIGYVGKYGELKMGWGPVCGFAPKFCNRSTISLVLSYLAFLCYMGLTI 171 (183)
Q Consensus 104 ~f~~Dqv~ayLl~saasAA~~v~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~~sflA~~~~~~~s~ 171 (183)
++..|.+++.+-+.+...-+.-....+.+++ ++..+.+.++-|+...++.++++++++.+..+..
T Consensus 79 ~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 79 EFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877775543222222211 2233445567899999999999999999988764
No 4
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=33.25 E-value=1.1e+02 Score=22.50 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=35.0
Q ss_pred HhcCccccCcccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030053 129 GKYGELKMGWGPVCGFAPKFCNRSTISLVLSYLAFLCYMGLTILSAHKLL 178 (183)
Q Consensus 129 ~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~~sflA~~~~~~~s~iS~~~L~ 178 (183)
.+.++.+.-|.+-|+..|-.-+...++.++=+++.+.-.+..+.-+|+.+
T Consensus 36 ~~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aC 85 (98)
T PF05702_consen 36 AREESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRAC 85 (98)
T ss_pred hHhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454556799999988877777777777777766666666666666654
No 5
>COG4291 Predicted membrane protein [Function unknown]
Probab=27.06 E-value=2.9e+02 Score=23.24 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=39.9
Q ss_pred cccccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccceeEEEeeEEEEEecchhhHHHHHHHHHHHHHHH
Q 030053 3 VETAAAKYSSSSWPWSNKRFFVAQITLRILATAFSLAAVSLMITGTQTVLVFLVQMKVTYSSSSAWRFLFGANIVTCILS 82 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~r~~~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~a~f~~~~af~ylv~an~I~~~Ys 82 (183)
+|..|.++...++++.-|+. |.+.++++...+.+... +--..+.++++++|..-+.|.
T Consensus 2 sp~~~~~~~~a~~~~~~~rh-------rlf~~a~lg~vlall~~---------------~~~~~~~a~~igan~ff~~yl 59 (228)
T COG4291 2 SPQVEPVEPTAMQRFAVRRH-------RLFAIAALGGVLALLLA---------------LALSRPLAILIGANLFFLAYL 59 (228)
T ss_pred CCccCCCCccccchhhHHhh-------HHHHHHHHHHHHHHHHH---------------HhcchhHHHHHhHHHHHHHHH
Confidence 55666666555555554443 44555555555554443 223456899999999999998
Q ss_pred HHHHH
Q 030053 83 VLSLI 87 (183)
Q Consensus 83 ~lql~ 87 (183)
++...
T Consensus 60 ~L~~~ 64 (228)
T COG4291 60 LLAVL 64 (228)
T ss_pred HHHHH
Confidence 88765
No 6
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=26.74 E-value=82 Score=18.74 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 030053 106 LHDMVTMVLLISGCAA 121 (183)
Q Consensus 106 ~~Dqv~ayLl~saasA 121 (183)
..||.++|+|+-++-.
T Consensus 13 aiDqgiay~Lm~~Al~ 28 (34)
T PF06376_consen 13 AIDQGIAYMLMLVALV 28 (34)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5799999999876543
No 7
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=21.21 E-value=1.1e+02 Score=20.81 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 030053 20 KRFFVAQITLRILATAFSLAAVS 42 (183)
Q Consensus 20 r~~~~~~l~LR~~a~~~sl~a~~ 42 (183)
|..+...++||++++++.+++++
T Consensus 53 ~~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 53 RLRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHc
Confidence 45566789999999999888763
No 8
>COG3647 Predicted membrane protein [Function unknown]
Probab=19.77 E-value=5e+02 Score=21.20 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=19.5
Q ss_pred CccccCcccccCCcchhhhhHHHHHHHHHHHH
Q 030053 132 GELKMGWGPVCGFAPKFCNRSTISLVLSYLAF 163 (183)
Q Consensus 132 G~~~~~W~~vC~~~~~FC~~~~~Sv~~sflA~ 163 (183)
|.+..||+. +-|-+|+..++=-++.+++.
T Consensus 169 GsQGDqWDa---QkDmlcdtlGAltal~lla~ 197 (205)
T COG3647 169 GSQGDQWDA---QKDMLCDTLGALTALILLAR 197 (205)
T ss_pred hcccchhhh---HHhHHHHHHHHHHHHHHHHH
Confidence 344447885 33689998887777666654
No 9
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=17.40 E-value=4.5e+02 Score=19.74 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 030053 26 QITLRILATAFSLAAVSLMITGT 48 (183)
Q Consensus 26 ~l~LR~~a~~~sl~a~~vM~t~~ 48 (183)
.++-=++.+.++++++.++.++.
T Consensus 20 y~iGFvLsIiLT~ipF~~vm~~~ 42 (111)
T COG3125 20 YLIGFVLSIILTLIPFWVVMTGA 42 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455677888999999888766
No 10
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=16.97 E-value=2.8e+02 Score=21.58 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccce
Q 030053 20 KRFFVAQITLRILATAFSLAAVSLMITGTQT 50 (183)
Q Consensus 20 r~~~~~~l~LR~~a~~~sl~a~~vM~t~~q~ 50 (183)
|.....--.+=++...+.++|.++++.|-+.
T Consensus 91 r~~~~~i~~~s~li~il~~iavil~a~~~~~ 121 (163)
T PF06653_consen 91 RKWFHIISIFSLLIVILTIIAVILFAVNISS 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEeeccc
Confidence 3333334445677788888899999887764
Done!