Query 030053
Match_columns 183
No_of_seqs 104 out of 449
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:20:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 10.2 3.1E+02 0.011 17.1 3.5 26 63-88 27-52 (59)
2 2y69_J Cytochrome C oxidase po 6.6 4.8E+02 0.016 17.3 3.4 27 62-88 47-73 (80)
3 2lg4_A Aurelin; antimicrobial 8.1 1.2E+02 0.0042 17.7 0.0 13 140-152 10-22 (40)
4 2e2s_A Agelenin; cystine knot, 5.7 1.3E+02 0.0044 17.1 0.0 10 142-151 3-12 (36)
5 3qoe_A Heterocyst differentiat 4.7 1.8E+02 0.0063 23.7 0.3 13 106-118 18-30 (302)
6 1jb0_X Photosystem I subunit P 4.3 6.2E+02 0.021 14.2 2.2 14 70-83 18-31 (35)
7 1pgl_2 Bean POD mottle virus l 3.7 2.1E+02 0.0071 24.6 -0.1 19 131-149 108-126 (370)
8 2l2t_A Receptor tyrosine-prote 3.5 8.1E+02 0.028 14.3 4.2 27 153-179 9-35 (44)
9 1ny7_2 Cowpea mosaic virus, la 3.5 2.3E+02 0.0077 24.4 -0.1 19 131-149 108-126 (369)
10 3dxe_B Amyloid beta A4 protein 3.2 4.9E+02 0.017 14.6 1.2 9 62-71 22-30 (35)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=10.23 E-value=3.1e+02 Score=17.11 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q 030053 63 SSSSAWRFLFGANIVTCILSVLSLIF 88 (183)
Q Consensus 63 ~~~~af~ylv~an~I~~~Ys~lql~~ 88 (183)
+|.--|++.++..+++.+|++-++..
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~ 52 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGW 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888877765
No 2
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.56 E-value=4.8e+02 Score=17.34 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=21.1
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHH
Q 030053 62 YSSSSAWRFLFGANIVTCILSVLSLIF 88 (183)
Q Consensus 62 f~~~~af~ylv~an~I~~~Ys~lql~~ 88 (183)
=+|.--|.+.++..+++.+|++-++..
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888888888887764
No 3
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=8.10 E-value=1.2e+02 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.7
Q ss_pred cccCCcchhhhhH
Q 030053 140 PVCGFAPKFCNRS 152 (183)
Q Consensus 140 ~vC~~~~~FC~~~ 152 (183)
.+|.+|..||+..
T Consensus 10 h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 10 HICESFKSFCKDS 22 (40)
Confidence 3699999999876
No 4
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=5.73 E-value=1.3e+02 Score=17.08 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=6.6
Q ss_pred cCCcchhhhh
Q 030053 142 CGFAPKFCNR 151 (183)
Q Consensus 142 C~~~~~FC~~ 151 (183)
|-..++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 5666777763
No 5
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.71 E-value=1.8e+02 Score=23.69 Aligned_cols=13 Identities=23% Similarity=0.306 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHH
Q 030053 106 LHDMVTMVLLISG 118 (183)
Q Consensus 106 ~~Dqv~ayLl~sa 118 (183)
.+||++.||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999998876
No 6
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=4.27 E-value=6.2e+02 Score=14.17 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q 030053 70 FLFGANIVTCILSV 83 (183)
Q Consensus 70 ylv~an~I~~~Ys~ 83 (183)
.++++|-++++|-+
T Consensus 18 llLaINflVAayYF 31 (35)
T 1jb0_X 18 LLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888888753
No 7
>1pgl_2 Bean POD mottle virus large (L) subunit; comovirus, viral coat protein, bean POD mottle virus (BPMV), icosahedral virus, virus/RNA complex; 2.80A {Bean-pod mottle virus} SCOP: b.121.4.2 b.121.4.2 PDB: 1bmv_2 1pgw_2
Probab=3.71 E-value=2.1e+02 Score=24.64 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.8
Q ss_pred cCccccCcccccCCcchhh
Q 030053 131 YGELKMGWGPVCGFAPKFC 149 (183)
Q Consensus 131 ~G~~~~~W~~vC~~~~~FC 149 (183)
-|.++..|+|.|.+.-.|+
T Consensus 108 ~s~~~~~WNPAc~~~~~f~ 126 (370)
T 1pgl_2 108 CSQDCELWNPACTKAMTMS 126 (370)
T ss_dssp SSSEEEEECTTTCSEEEEE
T ss_pred cchhheeeCcccCcceEEE
Confidence 4678889999998776554
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=3.54 E-value=8.1e+02 Score=14.32 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030053 153 TISLVLSYLAFLCYMGLTILSAHKLLS 179 (183)
Q Consensus 153 ~~Sv~~sflA~~~~~~~s~iS~~~L~~ 179 (183)
..+++.+-++-++.+....+..+-+.|
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 345666666644443333344333333
No 9
>1ny7_2 Cowpea mosaic virus, large (L) subunit; comovirus, viral coat protein, cowpea mosaic virus (CPMV), icosahedral virus; 3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 b.121.4.2 PDB: 2bfu_L
Probab=3.45 E-value=2.3e+02 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=14.6
Q ss_pred cCccccCcccccCCcchhh
Q 030053 131 YGELKMGWGPVCGFAPKFC 149 (183)
Q Consensus 131 ~G~~~~~W~~vC~~~~~FC 149 (183)
-|.+|..|+|.|.++-.|+
T Consensus 108 ~s~~~~~WNPAc~~~~~f~ 126 (369)
T 1ny7_2 108 CSQDSMTWNPGCKKNFSFT 126 (369)
T ss_dssp TTSEEEEECTTTCSEEEEE
T ss_pred cchhheeECcccCcceEEE
Confidence 4667889999998776554
No 10
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=3.17 E-value=4.9e+02 Score=14.60 Aligned_cols=9 Identities=22% Similarity=0.951 Sum_probs=6.1
Q ss_pred ecchhhHHHH
Q 030053 62 YSSSSAWRFL 71 (183)
Q Consensus 62 f~~~~af~yl 71 (183)
|.+ +.|+||
T Consensus 22 YEN-PTYkyf 30 (35)
T 3dxe_B 22 YEN-PTYKFF 30 (35)
T ss_dssp EEC-HHHHHH
T ss_pred CcC-cHHHHH
Confidence 555 777776
Done!