Query 030053
Match_columns 183
No_of_seqs 104 out of 449
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 12:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030053.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030053hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lqla_ d.227.1.1 (A:) Hypothe 4.7 4E+02 0.029 16.8 4.1 37 13-51 30-66 (141)
2 d1jb0x_ f.23.20.1 (X:) Subunit 4.6 2.4E+02 0.017 13.7 2.2 14 70-83 12-25 (29)
3 d2bbga_ g.6.1.1 (A:) Amb V all 3.4 1.2E+02 0.0089 15.8 0.2 10 141-150 18-27 (40)
4 d1ppje2 f.23.12.1 (E:1-69) Iro 3.3 4.7E+02 0.035 15.3 3.0 17 108-124 32-48 (69)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 2.8 4.8E+02 0.035 20.1 3.4 34 3-36 287-320 (472)
6 d1jb0m_ f.23.19.1 (M:) Subunit 2.6 4.1E+02 0.03 13.1 1.7 9 151-159 7-15 (31)
7 d1rfza_ a.195.1.1 (A:) YutG ho 2.6 6.5E+02 0.047 17.2 3.5 22 104-131 142-163 (164)
8 d1iz5a1 d.131.1.2 (A:2-120) Pr 2.5 4.1E+02 0.03 16.4 2.2 16 57-72 1-16 (119)
9 d1pgl21 b.121.4.2 (2:1-182) Co 2.4 1.8E+02 0.013 20.8 0.1 16 131-146 108-123 (182)
10 d1lshb_ f.7.1.1 (B:) Lipovitel 2.2 2E+02 0.015 20.3 0.1 13 134-146 66-78 (174)
No 1
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=4.74 E-value=4e+02 Score=16.83 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=23.0
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccee
Q 030053 13 SSWPWSNKRFFVAQITLRILATAFSLAAVSLMITGTQTV 51 (183)
Q Consensus 13 ~~~~~~~r~~~~~~l~LR~~a~~~sl~a~~vM~t~~q~~ 51 (183)
.|+...+.++...+++| .+++.|....+.+...+...
T Consensus 30 ~~~~~~~~G~~P~elll--aaLa~C~~~~~~~~a~~~gi 66 (141)
T d1lqla_ 30 ARPKHTAKGFGPLAALL--SGLAACELATANLMAPAKMI 66 (141)
T ss_dssp CSCTTTCSSCCHHHHHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCHHHHHH--HHHHHHHHHHHHHHHHHccC
Confidence 34444567788778775 55666666666666655543
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.62 E-value=2.4e+02 Score=13.66 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 030053 70 FLFGANIVTCILSV 83 (183)
Q Consensus 70 ylv~an~I~~~Ys~ 83 (183)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36677888877754
No 3
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=3.43 E-value=1.2e+02 Score=15.83 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=6.4
Q ss_pred ccCCcchhhh
Q 030053 141 VCGFAPKFCN 150 (183)
Q Consensus 141 vC~~~~~FC~ 150 (183)
-|++.+++|-
T Consensus 18 ccspigkycv 27 (40)
T d2bbga_ 18 CCSPIGKYCV 27 (40)
T ss_dssp EECSSSSSCE
T ss_pred ecccccCEEE
Confidence 3677777763
No 4
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.25 E-value=4.7e+02 Score=15.26 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030053 108 DMVTMVLLISGCAAASA 124 (183)
Q Consensus 108 Dqv~ayLl~saasAA~~ 124 (183)
.+.+.|++.++.+.+.+
T Consensus 32 Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHHH
Confidence 47889988877766543
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.76 E-value=4.8e+02 Score=20.10 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=14.2
Q ss_pred cccccccccCCCCCcccchhHHHHHHHHHHHHHH
Q 030053 3 VETAAAKYSSSSWPWSNKRFFVAQITLRILATAF 36 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~r~~~~~~l~LR~~a~~~ 36 (183)
.+.+|...-+.||++.+..+..-.+..|+.....
T Consensus 287 ~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~ 320 (472)
T d1wpga4 287 FNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGG 320 (472)
T ss_dssp TCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHH
T ss_pred cCCCchhhhcCCCCCCCccccCHHHHHHHHHHHH
Confidence 4455555544444443322222233455444433
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=2.62 E-value=4.1e+02 Score=13.07 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 030053 151 RSTISLVLS 159 (183)
Q Consensus 151 ~~~~Sv~~s 159 (183)
|+.++++.+
T Consensus 7 qv~valvia 15 (31)
T d1jb0m_ 7 QVYVALVIA 15 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 7
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.61 E-value=6.5e+02 Score=17.18 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=13.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 030053 104 LFLHDMVTMVLLISGCAAASAIGYVGKY 131 (183)
Q Consensus 104 ~f~~Dqv~ayLl~saasAA~~v~~l~~~ 131 (183)
-.++|-+++.+. |++.+.++++
T Consensus 142 gv~lDDivagi~------Aaa~srlAhr 163 (164)
T d1rfza_ 142 NTFLDDIVGAIA------AAASSRLAHR 163 (164)
T ss_dssp CTTHHHHHHHHH------HHHHHHHHHH
T ss_pred eehHHHHHHHHH------HHHHHHHhhc
Confidence 367888888773 3344455554
No 8
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.47 E-value=4.1e+02 Score=16.42 Aligned_cols=16 Identities=6% Similarity=0.376 Sum_probs=9.5
Q ss_pred EEEEEecchhhHHHHH
Q 030053 57 QMKVTYSSSSAWRFLF 72 (183)
Q Consensus 57 ~~~a~f~~~~af~ylv 72 (183)
|+++.|.+-..|++++
T Consensus 1 ~f~~~~~~a~~fk~i~ 16 (119)
T d1iz5a1 1 PFEIVFEGAKEFAQLI 16 (119)
T ss_dssp CEEEEEECHHHHHHHH
T ss_pred CcEEEeCCHHHHHHHH
Confidence 4556666666666544
No 9
>d1pgl21 b.121.4.2 (2:1-182) Comovirus coat proteins (VP37 and VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
Probab=2.41 E-value=1.8e+02 Score=20.79 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=11.6
Q ss_pred cCccccCcccccCCcc
Q 030053 131 YGELKMGWGPVCGFAP 146 (183)
Q Consensus 131 ~G~~~~~W~~vC~~~~ 146 (183)
.|.++..|+|-|.+.-
T Consensus 108 ~s~~~~~WNPAce~~~ 123 (182)
T d1pgl21 108 CSQDCELWNPACTKAM 123 (182)
T ss_dssp SSSEEEEECTTTCSEE
T ss_pred cccceeeECcccccee
Confidence 3667778999997653
No 10
>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=2.22 E-value=2e+02 Score=20.27 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=8.9
Q ss_pred cccCcccccCCcc
Q 030053 134 LKMGWGPVCGFAP 146 (183)
Q Consensus 134 ~~~~W~~vC~~~~ 146 (183)
-++.|++-|.+|+
T Consensus 66 Aki~WG~eCq~Y~ 78 (174)
T d1lshb_ 66 AAIGWGKNCQQYR 78 (174)
T ss_dssp EEEEESSSSCSEE
T ss_pred EEEecccccccee
Confidence 3456887787775
Done!