BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030055
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX77|UMP6_ARATH Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis
thaliana GN=At1g47420 PE=1 SV=1
Length = 257
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 109/169 (64%), Gaps = 16/169 (9%)
Query: 9 VRSIRRAACVRSSIIAAANNHHL-RHLSSSRSLFSLSSPAAS------------IPSKSI 55
+R +A S++ + HH+ +HLS R+L +++ P AS I S+
Sbjct: 15 IRGTAQAQARVGSLLQGS--HHIEKHLSRHRTLITVA-PNASVIGDVQINKGSFISYASV 71
Query: 56 PFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSAL 115
D + M +G R FSEDV+HMP + D ++ AFKDLMAADW ELP++V+ DAK+A+
Sbjct: 72 SRDLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAI 131
Query: 116 SRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFIN 164
S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE +
Sbjct: 132 SKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVK 180
>sp|Q8WN96|ITPR2_BOVIN Inositol 1,4,5-trisphosphate receptor type 2 OS=Bos taurus GN=ITPR2
PE=2 SV=1
Length = 2701
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 50 IPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASV-I 108
+ +S+PFD R+S F + HM V RDP+ + A W E+P + I
Sbjct: 765 MSDESLPFDLRAS----------FCRLMLHMHVDRDPQ-ESVVPVRYARLWTEIPTKITI 813
Query: 109 HDAKSALSRNNDDKAGQEVLKNVFS-AAEAVEEFIGIIMNIKMEFDDE 155
H+ S + +D +K F+ E VEE++ ++N F D+
Sbjct: 814 HEYDSITDSSRND------MKRKFALTMEFVEEYLKEVVNQPFPFGDK 855
>sp|Q8WSR4|ITPR_ASTPE Inositol 1,4,5-trisphosphate receptor OS=Asterina pectinifera
GN=IP3R PE=1 SV=1
Length = 2698
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 50 IPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASV-I 108
+ +S+P+D R+S F+ + HM V RDP+ ++ A W E+P + I
Sbjct: 753 MSDESLPYDLRAS----------FTRLMLHMHVDRDPK-EQVTPVKYAELWSEIPTQITI 801
Query: 109 HDAKSALSRNNDDKAGQEVLKNVFS-AAEAVEEFI-GIIMNIKMEFDDEIG-LSGEFINV 165
D A NN AG+E + FS + VEE++ ++ + + +D E L+ E +N+
Sbjct: 802 DDYDGA---NNLTHAGKEDAQPKFSLTIKFVEEYLCNVVSGVLVVYDKEQNKLTFEVVNL 858
>sp|Q0V8C2|EXOC3_BOVIN Exocyst complex component 3 OS=Bos taurus GN=EXOC3 PE=2 SV=1
Length = 745
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 87 EIQRAFKDLMAADWGELPASV--IHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140
+IQ++ D+ + DW + ++ + D K A+ R++ A E LKN+FS E V E
Sbjct: 74 DIQQSLADV-SKDWRQSINTIESLKDVKDAVVRHSQLAAAVENLKNIFSVPEIVRE 128
>sp|P29994|ITPR1_RAT Inositol 1,4,5-trisphosphate receptor type 1 OS=Rattus norvegicus
GN=Itpr1 PE=1 SV=2
Length = 2750
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 50 IPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIH 109
+ +++P+D R+S F + HM V RDP+ ++ A W E+P+ +
Sbjct: 768 MSDENLPYDLRAS----------FCRLMLHMHVDRDPQ-EQVTPVKYARLWSEIPSEI-- 814
Query: 110 DAKSALSRNNDDKAGQEVLKNVFSAA-EAVEEFIGIIMNIKMEFDDE 155
A+ + A ++ +K F+ E VEE++ ++ + F D+
Sbjct: 815 ----AIDDYDSSGASKDEIKERFAQTMEFVEEYLRDVVCQRFPFSDK 857
>sp|P11881|ITPR1_MOUSE Inositol 1,4,5-trisphosphate receptor type 1 OS=Mus musculus
GN=Itpr1 PE=1 SV=2
Length = 2749
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 50 IPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIH 109
+ +++P+D R+S F + HM V RDP+ ++ A W E+P+ +
Sbjct: 768 MSDENLPYDLRAS----------FCRLMLHMHVDRDPQ-EQVTPVKYARLWSEIPSEIAI 816
Query: 110 DAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDE 155
D + + D E+ + E VEE++ ++ + F D+
Sbjct: 817 DDYDSSGTSKD-----EIKERFAQTMEFVEEYLRDVVCQRFPFSDK 857
>sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens
GN=ITPR1 PE=1 SV=2
Length = 2758
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 50 IPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIH 109
+ +++P+D R+S F + HM V RDP+ ++ A W E+P+ +
Sbjct: 769 MSDENLPYDLRAS----------FCRLMLHMHVDRDPQ-EQVTPVKYARLWSEIPSEI-- 815
Query: 110 DAKSALSRNNDDKAGQEVLKNVFSAA-EAVEEFIGIIMNIKMEFDDE 155
A+ + A ++ +K F+ E VEE++ ++ + F D+
Sbjct: 816 ----AIDDYDSSGASKDEIKERFAQTMEFVEEYLRDVVCQRFPFSDK 858
>sp|O08648|M3K4_MOUSE Mitogen-activated protein kinase kinase kinase 4 OS=Mus musculus
GN=Map3k4 PE=1 SV=2
Length = 1597
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 33 HLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIR 84
H +++ F L S A S+P KSIP + +S+GC+ + MP+ R
Sbjct: 150 HKKNAQCSFMLDSVAGSLPKKSIPDVDLNKPYLSLGCSNAKLPVSMPMPIAR 201
>sp|Q9HCF6|TRPM3_HUMAN Transient receptor potential cation channel subfamily M member 3
OS=Homo sapiens GN=TRPM3 PE=2 SV=4
Length = 1732
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 37 SRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDP 86
S S ++ +P PS+SI F+ +S+ RSFS D H+P ++P
Sbjct: 1466 SSSAYATLAPTDRPPSRSIDFEDITSMD-----TRSFSSDYTHLPECQNP 1510
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,080,178
Number of Sequences: 539616
Number of extensions: 2088298
Number of successful extensions: 5939
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5935
Number of HSP's gapped (non-prelim): 15
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)