Query 030055
Match_columns 183
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14290 DUF4370: Domain of un 100.0 3.9E-79 8.4E-84 517.2 15.1 175 1-180 1-177 (239)
2 PLN02749 Uncharacterized prote 100.0 2E-63 4.2E-68 406.8 10.7 111 69-180 1-111 (173)
3 PRK08230 tartrate dehydratase 77.7 5.5 0.00012 35.9 5.5 53 87-140 9-61 (299)
4 COG1951 TtdA Tartrate dehydrat 64.9 19 0.00042 32.7 6.0 55 86-141 8-62 (297)
5 PRK06246 fumarate hydratase; P 64.2 17 0.00038 32.3 5.5 60 81-141 2-61 (280)
6 PF05681 Fumerase: Fumarate hy 58.2 21 0.00045 31.6 4.9 51 89-140 2-52 (271)
7 cd07119 ALDH_BADH-GbsA Bacillu 55.7 21 0.00046 32.0 4.6 52 75-126 24-83 (482)
8 PF00101 RuBisCO_small: Ribulo 54.4 11 0.00023 28.9 2.2 46 75-120 3-74 (99)
9 PRK10702 endonuclease III; Pro 52.9 9.2 0.0002 31.9 1.8 72 83-157 42-116 (211)
10 cd03527 RuBisCO_small Ribulose 51.8 16 0.00036 28.1 2.9 26 75-100 4-29 (99)
11 COG4423 Uncharacterized protei 49.5 44 0.00096 25.4 4.8 48 82-129 4-52 (81)
12 PRK11241 gabD succinate-semial 49.0 26 0.00055 32.1 4.1 55 75-129 37-97 (482)
13 PF11841 DUF3361: Domain of un 47.2 71 0.0015 26.5 6.1 58 88-145 37-98 (160)
14 TIGR01237 D1pyr5carbox2 delta- 47.1 37 0.0008 31.1 4.9 50 76-125 59-114 (511)
15 TIGR00722 ttdA_fumA_fumB hydro 45.4 42 0.00092 29.8 4.8 51 89-140 2-52 (273)
16 cd08048 TAF11 TATA Binding Pro 44.9 1E+02 0.0022 22.9 6.1 38 137-177 45-83 (85)
17 PRK15389 fumarate hydratase; P 43.0 51 0.0011 32.1 5.3 74 67-140 18-98 (536)
18 PF12631 GTPase_Cys_C: Catalyt 42.8 50 0.0011 23.0 4.0 33 144-180 41-73 (73)
19 PF14355 Abi_C: Abortive infec 39.1 1.3E+02 0.0029 20.9 6.7 68 105-177 2-69 (80)
20 PF13758 Prefoldin_3: Prefoldi 35.9 37 0.00079 26.5 2.6 48 120-176 27-74 (99)
21 PF03789 ELK: ELK domain ; In 35.5 29 0.00063 20.7 1.6 15 138-152 7-21 (22)
22 PF07849 DUF1641: Protein of u 35.3 33 0.00071 22.3 2.0 16 82-97 19-34 (42)
23 KOG2120 SCF ubiquitin ligase, 33.9 51 0.0011 31.4 3.7 55 97-164 95-149 (419)
24 PLN02289 ribulose-bisphosphate 33.8 36 0.00077 29.2 2.5 31 70-101 64-94 (176)
25 cd07149 ALDH_y4uC Uncharacteri 33.1 77 0.0017 27.9 4.5 77 77-153 12-94 (453)
26 COG0473 LeuB Isocitrate/isopro 32.1 21 0.00045 33.1 0.8 55 121-178 12-66 (348)
27 PRK10880 adenine DNA glycosyla 30.8 47 0.001 30.1 2.9 81 84-177 44-127 (350)
28 PRK09847 gamma-glutamyl-gamma- 30.1 1.7E+02 0.0036 26.9 6.2 74 75-148 46-138 (494)
29 cd07117 ALDH_StaphAldA1 Unchar 27.0 1.1E+02 0.0024 27.9 4.5 53 75-127 27-85 (475)
30 PF02861 Clp_N: Clp amino term 27.0 53 0.0011 20.2 1.8 24 134-157 30-53 (53)
31 PF02436 PYC_OADA: Conserved c 26.8 33 0.00072 28.7 1.1 73 85-158 56-134 (196)
32 PRK05255 hypothetical protein; 26.4 87 0.0019 26.2 3.5 39 131-178 22-60 (171)
33 TIGR02880 cbbX_cfxQ probable R 25.8 1.7E+02 0.0036 24.9 5.2 93 69-163 182-278 (284)
34 cd07131 ALDH_AldH-CAJ73105 Unc 25.6 1.3E+02 0.0028 27.0 4.6 48 77-124 28-81 (478)
35 KOG0034 Ca2+/calmodulin-depend 25.4 68 0.0015 26.7 2.7 49 82-130 120-168 (187)
36 cd07141 ALDH_F1AB_F2_RALDH1 NA 24.8 2.4E+02 0.0052 25.6 6.2 70 75-144 33-122 (481)
37 PF03810 IBN_N: Importin-beta 24.6 89 0.0019 20.4 2.7 25 91-115 39-71 (77)
38 PF05480 Staph_haemo: Staphylo 23.9 61 0.0013 22.2 1.8 29 87-115 7-35 (43)
39 cd07139 ALDH_AldA-Rv0768 Mycob 23.7 1.7E+02 0.0037 26.2 5.0 53 75-127 25-85 (471)
40 PF04751 DUF615: Protein of un 23.3 67 0.0015 26.2 2.3 37 133-178 13-49 (157)
41 PLN02161 beta-amylase 23.2 53 0.0011 32.2 1.9 41 136-177 161-201 (531)
42 PF08532 Glyco_hydro_42M: Beta 23.0 7.6 0.00017 31.1 -3.2 41 135-176 77-134 (207)
43 PF12974 Phosphonate-bd: ABC t 22.9 1.2E+02 0.0026 24.0 3.5 31 101-131 200-230 (243)
44 TIGR01083 nth endonuclease III 21.9 1E+02 0.0023 24.6 3.1 72 83-157 39-113 (191)
45 PLN02466 aldehyde dehydrogenas 21.7 5.7E+02 0.012 24.1 8.2 54 74-127 83-144 (538)
46 PTZ00226 fumarate hydratase; P 21.6 2.2E+02 0.0048 28.2 5.7 65 76-140 64-128 (570)
47 COG2427 Uncharacterized conser 20.9 79 0.0017 25.1 2.2 18 80-97 120-137 (148)
No 1
>PF14290 DUF4370: Domain of unknown function (DUF4370)
Probab=100.00 E-value=3.9e-79 Score=517.16 Aligned_cols=175 Identities=57% Similarity=0.848 Sum_probs=164.7
Q ss_pred CchhhHHHHHHHHHHHhhhhhHHHHh-h-hhhhhhhhccccccccCCCCCCCCCCCCCCCcCccccccccccccccccCC
Q 030055 1 MEKIAVMSVRSIRRAACVRSSIIAAA-N-NHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVA 78 (183)
Q Consensus 1 mek~~m~~lrs~~r~a~~~s~~~~~~-~-~~~~~h~ss~~sl~t~~~~~~~~ps~~~~~d~~~~~s~~~g~~R~fS~d~~ 78 (183)
||| ||+.||++||++|+||++.++. + +|+++|..+++++++++++.. +. ++++||++||+||||++|+||+|++
T Consensus 1 m~~-~~~~lr~~~R~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~--~~-~~~s~~~~~~a~s~~~~R~fS~d~~ 76 (239)
T PF14290_consen 1 MEK-AMSALRSLLRSAALRSSRSSSASRSHHQIRHHLSSRSLFTLSSPSS--RN-RISSDCGGPFAMSWGSRRFFSEDVS 76 (239)
T ss_pred Cch-HHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhhhccccCCCCccc--cc-cccccccCCcccccchhhhcccccc
Confidence 887 5999999999999999987555 3 377788558999999998873 33 8899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 030055 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL 158 (183)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~Gl 158 (183)
|||+|+||||++|||||||+||+|||++||++|||||||||||||||||||||||||||||||||+|++|||||||||||
T Consensus 77 hlP~i~Dp~i~~afKdLmAasW~elp~svv~~akkalSk~tdD~AGqeaL~nvfRAAeAvEeFgG~L~tLrm~idDl~Gl 156 (239)
T PF14290_consen 77 HLPAISDPEIEKAFKDLMAASWDELPDSVVNEAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGILVTLRMEIDDLCGL 156 (239)
T ss_pred cCCCCCCHHHHHHHHHHHhcchhhCCHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCchHHHHHhhcccc
Q 030055 159 SGEFINVMLPTWMHLALMNPIC 180 (183)
Q Consensus 159 SGEnV~~PLPd~~~~Av~~a~~ 180 (183)
|||||| ||||+++|||+++|+
T Consensus 157 sGEnv~-PLP~~~~~Al~t~y~ 177 (239)
T PF14290_consen 157 SGENVK-PLPDYIENALRTAYK 177 (239)
T ss_pred CCCCCC-CCcHHHHHHHHHHHH
Confidence 999999 999999999999996
No 2
>PLN02749 Uncharacterized protein At1g47420
Probab=100.00 E-value=2e-63 Score=406.77 Aligned_cols=111 Identities=62% Similarity=0.928 Sum_probs=109.8
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030055 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (183)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sL 148 (183)
++|+||+|++|||+|+||+|++|||||||+||+|||++|+++||+|||||||||||||||+||||||||||||||+|++|
T Consensus 1 ~~R~fs~d~~~lP~i~Dp~i~~afkdLma~sW~elp~sv~~~~kkalsk~tddkagqeaL~nvfrAAeAveeFgG~L~sL 80 (173)
T PLN02749 1 LRRRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGTLVSL 80 (173)
T ss_pred CccccccccccCCCCCCHHHHHHHHHHHhcchhhCChHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCccccCCCCchHHHHHhhcccc
Q 030055 149 KMEFDDEIGLSGEFINVMLPTWMHLALMNPIC 180 (183)
Q Consensus 149 rmeiDDl~GlSGEnV~~PLPd~~~~Av~~a~~ 180 (183)
|||||||||+|||||| ||||+++|||+++|+
T Consensus 81 rmeidDl~GlsGEnv~-PLPd~~~~Al~tay~ 111 (173)
T PLN02749 81 RMEIDDLIGLSGENVK-PLPDYIENALETAYQ 111 (173)
T ss_pred HHHHHHhcCCCCCCCC-CCcHHHHHHHHHHHH
Confidence 9999999999999999 999999999999996
No 3
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=77.68 E-value=5.5 Score=35.92 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 030055 87 EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (183)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEe 140 (183)
+|.++.++|+-..=..||+.|+...|+|..+-+ +..++.+|++.+.-++..++
T Consensus 9 ~i~~~v~~l~~~a~~~lp~Dv~~al~~a~~~E~-s~~ak~~L~~ileN~~iA~~ 61 (299)
T PRK08230 9 KLTDIMAKFTAYISKRLPDDVTAKLKELKDAET-SPLAKIIYDTMFENQQLAID 61 (299)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999954 45579999999888887765
No 4
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=64.90 E-value=19 Score=32.70 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHH
Q 030055 86 PEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEF 141 (183)
Q Consensus 86 pei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeF 141 (183)
-++....+|+...-=+.||+.|++..++|+.+ .++.+++.+|+...+-+|-+++-
T Consensus 8 e~l~~~v~~a~~~as~~lp~Dv~~al~~a~~~-Ees~~ak~~l~~il~N~~ia~~~ 62 (297)
T COG1951 8 EDLTESVADAFQEASTYLPPDVVQALAKALER-EESEIAKYVLLQILENSRIAAKE 62 (297)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hcCHHHHHHHHHHHHHHHHHHhc
Confidence 35666777777777789999999999999999 88999999999999888887763
No 5
>PRK06246 fumarate hydratase; Provisional
Probab=64.18 E-value=17 Score=32.31 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHH
Q 030055 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEF 141 (183)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeF 141 (183)
..|+--+|..+.++++..-=..||+.|++..++|+.+ -++..++.+|+....-++..++-
T Consensus 2 ~~i~~~~i~~~v~~~~~~a~~~lp~Dv~~~l~~a~~~-E~s~~ak~~l~~ileN~~iA~~~ 61 (280)
T PRK06246 2 REIHVEDIIEAVAELCIEANYYLPDDVKEALKKAYEK-EESPIGKEILKAILENAEIAKEE 61 (280)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHhcC
Confidence 3455556999999999988899999999999999986 55556788999888888877663
No 6
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=58.23 E-value=21 Score=31.58 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=41.0
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 030055 89 QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (183)
Q Consensus 89 ~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEe 140 (183)
.++..+|+-.-=..||+.+++..++|+.+.+.+. ++.+|+...+-++..++
T Consensus 2 ~~~v~~~~~~a~~~lp~Dv~~al~~a~~~E~~~~-ak~vl~~ileN~~iA~~ 52 (271)
T PF05681_consen 2 TEAVAELIIKASTYLPDDVLEALKKAYERETSPL-AKWVLEQILENAEIAAK 52 (271)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHhh
Confidence 4556666666668999999999999999966655 99999988888877665
No 7
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=55.71 E-value=21 Score=32.01 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=41.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCc----hhHHHHHHhhhcccCCchhHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELP----ASVIHDAKSALSRNNDDKAGQE 126 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp----~svv~~ak~alSk~tDDkAGqe 126 (183)
+-+..+|....-++..+++..-++ .|..+| ..++..+...|.++.|+.+--.
T Consensus 24 ~~i~~~~~~~~~~v~~av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 83 (482)
T cd07119 24 EVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQERAALLFRIADKIREDAEELARLE 83 (482)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346677888888999999988777 599999 5677888888888888777543
No 8
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=54.36 E-value=11 Score=28.91 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=31.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----------------ccC--CCc-------hhHHHHHHhhhcccCC
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA-----------------DWG--ELP-------ASVIHDAKSALSRNND 120 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----------------sW~--elp-------~svv~~ak~alSk~tD 120 (183)
|+.+.||.++|.+|.+-+..|++- +|. .+| +.|+.+.+.|++...+
T Consensus 3 et~S~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~ 74 (99)
T PF00101_consen 3 ETFSYLPPLTDEEIAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPG 74 (99)
T ss_dssp STTTTSS---HHHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTT
T ss_pred cccccCCCCCHHHHHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCC
Confidence 567899999999999999999985 455 554 4466666666665443
No 9
>PRK10702 endonuclease III; Provisional
Probab=52.91 E-value=9.2 Score=31.89 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccc
Q 030055 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIG 157 (183)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAv-EeFgGiL~sLrmeiDDl~G 157 (183)
-+|+.+.+++..|+.. +|..|-..=.++.+.+++..+=- ..--+++.++|+.+ |+|||.+-..|.+|-.|=|
T Consensus 42 t~~~~v~~~~~~L~~~~pt~e~l~~a~~~~l~~~i~~~G~y---~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpG 116 (211)
T PRK10702 42 ATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY---NSKAENVIKTCRILLEQHNGEVPEDRAALEALPG 116 (211)
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHCCCHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCc
Confidence 3678888888888864 33333333355566666542210 12235667777776 7788866666655554444
No 10
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=51.83 E-value=16 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.579 Sum_probs=23.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHccc
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAADW 100 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW 100 (183)
|..+-||+++|.+|.+.+..|++--|
T Consensus 4 ~t~sylp~lt~~~i~~QI~yll~qG~ 29 (99)
T cd03527 4 ETFSYLPPLTDEQIAKQIDYIISNGW 29 (99)
T ss_pred cccccCCCCCHHHHHHHHHHHHhCCC
Confidence 57889999999999999999998655
No 11
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.51 E-value=44 Score=25.39 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcc-cCCchhHHHHHH
Q 030055 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR-NNDDKAGQEVLK 129 (183)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk-~tDDkAGqeaLk 129 (183)
.||||++-..-+.|-+--=.-+-+.|+..++..|.+ ...-+.=.|.|+
T Consensus 4 nIKDp~~d~lar~LA~rtg~S~t~AV~~Al~~~lar~r~r~~pL~~~l~ 52 (81)
T COG4423 4 NIKDPEVDRLARELAARTGESKTDAVRDALKERLARLRAREIPLRERLA 52 (81)
T ss_pred ccCChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 499999998888887766667778888888888888 333333334443
No 12
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=49.01 E-value=26 Score=32.11 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=42.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCc----hhHHHHHHhhhcccCCchhHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELP----ASVIHDAKSALSRNNDDKAGQEVLK 129 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp----~svv~~ak~alSk~tDDkAGqeaLk 129 (183)
+-+..+|..+.-++..|++..-++ .|.++| -.++..+...|.++.|+.+.-..+.
T Consensus 37 ~~v~~~~~~~~~~v~~av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 97 (482)
T PRK11241 37 DKLGSVPKMGADETRAAIDAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLE 97 (482)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 456778888889999999888765 799999 4577888888988888876655543
No 13
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=47.17 E-value=71 Score=26.53 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHHHHHHH---cccCCCchhHHHHHHhhhcccC-CchhHHHHHHHHHHHHHHHHHHHHHH
Q 030055 88 IQRAFKDLMA---ADWGELPASVIHDAKSALSRNN-DDKAGQEVLKNVFSAAEAVEEFIGII 145 (183)
Q Consensus 88 i~~afKdLmA---asW~elp~svv~~ak~alSk~t-DDkAGqeaLknvfrAAeAvEeFgGiL 145 (183)
.+.||-.||- .+|+-|+++.|..+-.-++++. |...-|-+|...-.....-...++.+
T Consensus 37 ~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V 98 (160)
T PF11841_consen 37 ALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLV 98 (160)
T ss_pred HHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5789999998 4999999999998888888777 77788888877777666666655543
No 14
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=47.13 E-value=37 Score=31.10 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=38.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ 125 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGq 125 (183)
-+.++|..+..++..|++.--++ +|..+|.. ++..+...|.++.|+.+-.
T Consensus 59 ~i~~~~~~~~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 114 (511)
T TIGR01237 59 VVGKVGKASVEQAEHALQIAKKAFEAWKKTPVRERAGILRKAAAIMERRRHELNAL 114 (511)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 45568888888998888877664 79999976 5677888888887777643
No 15
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=45.39 E-value=42 Score=29.83 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=40.7
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 030055 89 QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (183)
Q Consensus 89 ~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEe 140 (183)
.++..+|+-..=..||+.|.+..++|..+ -+...++.+|+....-++..++
T Consensus 2 ~~~v~~~~~~a~~~lp~Dv~~al~~a~~~-E~s~~ak~~l~~ileN~~iA~~ 52 (273)
T TIGR00722 2 TEAVKEAIKEAVTRLPEDVVDAIKEAYDR-EESEIAKINLEAILDNIEIAEK 52 (273)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhc
Confidence 45667777777788999999999999977 4555689999998888877665
No 16
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=44.88 E-value=1e+02 Score=22.86 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCccccCCCC-chHHHHHhhc
Q 030055 137 AVEEFIGIIMNIKMEFDDEIGLSGEFINVML-PTWMHLALMN 177 (183)
Q Consensus 137 AvEeFgGiL~sLrmeiDDl~GlSGEnV~~PL-Pd~~~~Av~~ 177 (183)
....|-|-|++.=+++-|--|.. +.+ || |.|+..|.+-
T Consensus 45 laKvFVGeivE~A~~V~~~~~~~--~~~-Pl~P~HireA~rr 83 (85)
T cd08048 45 IAKVFVGEIVEEARDVQEEWGEA--NTG-PLQPRHLREAYRR 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--cCC-CCCcHHHHHHHHH
Confidence 34578898888877777776654 456 65 8999998863
No 17
>PRK15389 fumarate hydratase; Provisional
Probab=43.00 E-value=51 Score=32.12 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=56.5
Q ss_pred ccccccccccCCCC-------CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHH
Q 030055 67 IGCNRSFSEDVAHM-------PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVE 139 (183)
Q Consensus 67 ~g~~R~fS~d~~hl-------P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvE 139 (183)
.-.+|.|.++++-- =-|.-.+|.++.++|+-..=..||+.|+...++|+.+.-+...++.+|+..+.-++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~v~~l~~~a~~~lp~Dv~~aL~~a~~~~E~s~~ak~vl~~ileN~~iA~ 97 (536)
T PRK15389 18 TEYRLLTSDGVSVAEFEGREILKVEPEALTLLAEEAFHDISHLLRPAHLQQLAKILDDPEASDNDKFVALDLLKNANIAA 97 (536)
T ss_pred ceeEEeccCceEEEeeCCeeEEEECHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 44556666544422 23455569999999999999999999999999998665667889999999888777766
Q ss_pred H
Q 030055 140 E 140 (183)
Q Consensus 140 e 140 (183)
+
T Consensus 98 ~ 98 (536)
T PRK15389 98 G 98 (536)
T ss_pred c
Confidence 5
No 18
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=42.79 E-value=50 Score=22.96 Aligned_cols=33 Identities=9% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHhhhhhhcccCCccccCCCCchHHHHHhhcccc
Q 030055 144 IIMNIKMEFDDEIGLSGEFINVMLPTWMHLALMNPIC 180 (183)
Q Consensus 144 iL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~~a~~ 180 (183)
+-..||.+++.|-.++|+.+. +++.+.+=+-+|
T Consensus 41 ~a~~L~~A~~~L~~ItG~~~~----ediLd~IFs~FC 73 (73)
T PF12631_consen 41 VAEDLREALESLGEITGEVVT----EDILDNIFSNFC 73 (73)
T ss_dssp HHHHHHHHHHHHHHHCTSS------HHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHhCCCCh----HHHHHHHHHhhC
Confidence 556899999999999998665 777776654444
No 19
>PF14355 Abi_C: Abortive infection C-terminus
Probab=39.13 E-value=1.3e+02 Score=20.93 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=43.8
Q ss_pred hhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhhc
Q 030055 105 ASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALMN 177 (183)
Q Consensus 105 ~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~~ 177 (183)
++++..++++|....++... +.++.+.+....+- --|.+||-...|-=|-...... +-|.+-.-|+.+
T Consensus 2 ~~L~k~~~~~L~~~~~~~~~-~~ik~il~~l~~i~---~~i~~lRN~~g~~HG~~~~~~~-~~~~~A~l~v~~ 69 (80)
T PF14355_consen 2 PKLVKKVKKALGLSPDSQSD-KDIKKILSSLNSIV---SGINELRNKYGDAHGRGSKPYE-LDPRHARLAVNA 69 (80)
T ss_pred hHHHHHHHHHHccCCcccch-HHHHHHHHHHHHHH---HHHHHHHCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Confidence 35778899999888777776 66666666655544 2356778777766665445554 445555555543
No 20
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=35.94 E-value=37 Score=26.54 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=34.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhh
Q 030055 120 DDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALM 176 (183)
Q Consensus 120 DDkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~ 176 (183)
+|.+.+|-|.. ..-+|||.|++ ..||++++|- |..+. -=|+++.++|-
T Consensus 27 ~~~~~~e~l~~------i~r~f~g~lv~-~kEi~~ilG~-~~~i~-Rt~~Qvv~~l~ 74 (99)
T PF13758_consen 27 DDDATREDLLR------IRRDFGGSLVT-EKEIKEILGE-GQGIT-RTREQVVDVLS 74 (99)
T ss_pred cCCCCHHHHHH------HHHhcCccccc-HHHHHHHhCC-CCCCC-cCHHHHHHHHH
Confidence 46666766544 45689999988 4699999998 44555 56788877763
No 21
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=35.48 E-value=29 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.693 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhh
Q 030055 138 VEEFIGIIMNIKMEF 152 (183)
Q Consensus 138 vEeFgGiL~sLrmei 152 (183)
-..+||-|.+||.||
T Consensus 7 lrkY~g~i~~Lr~Ef 21 (22)
T PF03789_consen 7 LRKYSGYISSLRQEF 21 (22)
T ss_pred HHHHhHhHHHHHHHh
Confidence 357999999999987
No 22
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=35.29 E-value=33 Score=22.34 Aligned_cols=16 Identities=44% Similarity=0.816 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHH
Q 030055 82 VIRDPEIQRAFKDLMA 97 (183)
Q Consensus 82 ~i~Dpei~~afKdLmA 97 (183)
.++||||++++-=|++
T Consensus 19 ~l~DpdvqrgL~~ll~ 34 (42)
T PF07849_consen 19 ALRDPDVQRGLGFLLA 34 (42)
T ss_pred HHcCHHHHHHHHHHHH
Confidence 4689999999877664
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=51 Score=31.37 Aligned_cols=55 Identities=18% Similarity=0.414 Sum_probs=40.8
Q ss_pred HcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccccC
Q 030055 97 AADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFIN 164 (183)
Q Consensus 97 AasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~ 164 (183)
..+|+-|||.+....=++|.| |+..+++--|..|+|+=-. ..+=--..++|.++.
T Consensus 95 gv~~~slpDEill~IFs~L~k-----------k~LL~~~~VC~Rfyr~~~d--e~lW~~lDl~~r~i~ 149 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCK-----------KELLKVSGVCKRFYRLASD--ESLWQTLDLTGRNIH 149 (419)
T ss_pred CCCcccCCHHHHHHHHHhccH-----------HHHHHHHHHHHHHhhcccc--ccceeeeccCCCccC
Confidence 467999999999999999988 6788899999999995321 111112346777777
No 24
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=33.81 E-value=36 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.573 Sum_probs=28.0
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 030055 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (183)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (183)
.|.| |+.+-||.++|-+|.+-..=|+.-.|.
T Consensus 64 ~kkf-ETfSYLPpLtdeqI~kQVeYli~~GW~ 94 (176)
T PLN02289 64 KKKF-ETLSYLPDLTDEELAKEVDYLLRNKWV 94 (176)
T ss_pred ccce-eeeecCCCCCHHHHHHHHHHHHhCCCe
Confidence 4555 799999999999999999999999995
No 25
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=33.11 E-value=77 Score=27.86 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030055 77 VAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKM 150 (183)
Q Consensus 77 ~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrm 150 (183)
+.++|...-.++..+++..-++ .|..+|.. ++..+...|.++.|+.+-.....+=--.+||-.|+...+..|+.
T Consensus 12 ~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~ 91 (453)
T cd07149 12 IGRVPVASEEDVEKAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIKDARKEVDRAIETLRL 91 (453)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 3456666666777766665533 69999876 56667777777776666444444333344455566666666664
Q ss_pred hhh
Q 030055 151 EFD 153 (183)
Q Consensus 151 eiD 153 (183)
.++
T Consensus 92 ~~~ 94 (453)
T cd07149 92 SAE 94 (453)
T ss_pred HHH
Confidence 443
No 26
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=32.05 E-value=21 Score=33.14 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhhcc
Q 030055 121 DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALMNP 178 (183)
Q Consensus 121 DkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~~a 178 (183)
|--|+|+..-+.+.-+|+.+|+ ..+.-+-.|.=|-.=+..|.|||++..++++.+
T Consensus 12 DGIGpEv~~~a~kVl~a~~~~~---~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~ 66 (348)
T COG0473 12 DGIGPEVMAAALKVLEAAAEFG---LDFEFEEAEVGGEAYDKHGEPLPEETLESLKKA 66 (348)
T ss_pred CCCCHHHHHHHHHHHHHhhhcC---CceEEEEehhhHHHHHHcCCCCCHHHHHHHHhC
Confidence 5569999999999999999854 333333334444455667779999999988753
No 27
>PRK10880 adenine DNA glycosylase; Provisional
Probab=30.85 E-value=47 Score=30.11 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcccCCc
Q 030055 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGLSG 160 (183)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAv-EeFgGiL~sLrmeiDDl~GlSG 160 (183)
++..+..+|..||.. +|..|=+.-.++++++++.-+=- . --+|...+|+.+ +++||.+-..+ ++|+.|-|
T Consensus 44 ~v~~v~~~~~rl~~~fPt~~~La~a~~eel~~~~~glGyy---~-RAr~L~~~A~~i~~~~~g~~p~~~---~~L~~LpG 116 (350)
T PRK10880 44 QVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY---A-RARNLHKAAQQVATLHGGEFPETF---EEVAALPG 116 (350)
T ss_pred cHHHHHHHHHHHHHHCcCHHHHHCcCHHHHHHHHHcCChH---H-HHHHHHHHHHHHHHHhCCCchhhH---HHHhcCCC
Confidence 566777788888874 23333333345555555543321 1 256888999988 88999776555 45555554
Q ss_pred cccCCCCchHHHHHhhc
Q 030055 161 EFINVMLPTWMHLALMN 177 (183)
Q Consensus 161 EnV~~PLPd~~~~Av~~ 177 (183)
|| .++.+||.+
T Consensus 117 --IG----~~TA~aIl~ 127 (350)
T PRK10880 117 --VG----RSTAGAILS 127 (350)
T ss_pred --cc----HHHHHHHHH
Confidence 44 456666654
No 28
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=30.10 E-value=1.7e+02 Score=26.93 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=51.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCch----hHHHHHHhhhcccCCchhHH----------HHH-HHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELPA----SVIHDAKSALSRNNDDKAGQ----------EVL-KNVFSAA 135 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~----svv~~ak~alSk~tDDkAGq----------eaL-knvfrAA 135 (183)
+-+..+|..+..++..|++..-++ .|..+|. .++..+...|.++.|+.+-- +++ .+|-+++
T Consensus 46 ~~i~~v~~~~~~dv~~av~aA~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~ 125 (494)
T PRK09847 46 APLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAA 125 (494)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456778899999999999988876 5999995 45677777777777766532 232 2555666
Q ss_pred HHHHHHHHHHHHH
Q 030055 136 EAVEEFIGIIMNI 148 (183)
Q Consensus 136 eAvEeFgGiL~sL 148 (183)
+.++.|.+.+..+
T Consensus 126 ~~l~~~a~~~~~~ 138 (494)
T PRK09847 126 RAIRWYAEAIDKV 138 (494)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555443
No 29
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=26.96 E-value=1.1e+02 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=40.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEV 127 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGqea 127 (183)
+-+..+|.....++..|++...++ +|..+|.. ++..+...|.++.|+.+--..
T Consensus 27 ~~i~~~~~~~~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~ 85 (475)
T cd07117 27 ETLSEITDATDADVDRAVKAAQEAFKTWRKTTVAERANILNKIADIIDENKELLAMVET 85 (475)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 345678888888999888887664 69999975 677788888888777665433
No 30
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=26.96 E-value=53 Score=20.17 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccc
Q 030055 134 AAEAVEEFIGIIMNIKMEFDDEIG 157 (183)
Q Consensus 134 AAeAvEeFgGiL~sLrmeiDDl~G 157 (183)
+.+..+++|.-...|+.+|+..+|
T Consensus 30 ~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 30 AARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhC
Confidence 456778899999999999988776
No 31
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=26.78 E-value=33 Score=28.75 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhcccC
Q 030055 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG------IIMNIKMEFDDEIGL 158 (183)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgG------iL~sLrmeiDDl~Gl 158 (183)
|-++.++..+|....|..+|++|++-++.-+-+ +-..-..|..+.|..--+.++.--| -+..+|.++.+..|-
T Consensus 56 ~qA~~nV~~~~~g~r~~~~p~~v~~~~~G~~G~-pp~~~~~~l~~~vl~~~~~i~~RP~~~l~p~d~~~~r~~l~~~~g~ 134 (196)
T PF02436_consen 56 DQAVFNVLNGLLGERYKDFPDSVVDYLLGKYGK-PPGGFPEELRKKVLKGEEPITGRPGDLLPPADLDKLRKELEEKAGR 134 (196)
T ss_dssp HHHHHHHHTT-HHTTTSS-BHHHHHHHTTTT----TTSS-HHHHHHHHTTS---SSSGGGCS----HHHHHHHHHHHCTS
T ss_pred HHHHHHHHhhhcCccccchhHHHHHHhCcccCC-CCCCCCHHHHHHHhcCCCCCCCCccccCChhhHHHHHHHHHHHcCC
Confidence 445666666666778999999999999888877 5555557777777766555444334 467788888887753
No 32
>PRK05255 hypothetical protein; Provisional
Probab=26.45 E-value=87 Score=26.16 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhhcc
Q 030055 131 VFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALMNP 178 (183)
Q Consensus 131 vfrAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~~a 178 (183)
+=|.++|+.++|.-|+.|-..-= =++|||+.+.+||..+
T Consensus 22 ~KRe~~alq~LG~~L~~Ls~~ql---------~~lpL~e~L~~Ai~ea 60 (171)
T PRK05255 22 IKRDAEALQDLGEELVELSKDQL---------AKLPLDEDLRDAILEA 60 (171)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHH---------hcCCCCHHHHHHHHHH
Confidence 34789999999999988754311 1359999999999765
No 33
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.80 E-value=1.7e+02 Score=24.94 Aligned_cols=93 Identities=8% Similarity=0.073 Sum_probs=52.5
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhccc-CCchhH-HHHHHHHHHHHHHHHHHHHHHH
Q 030055 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN-NDDKAG-QEVLKNVFSAAEAVEEFIGIIM 146 (183)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~-tDDkAG-qeaLknvfrAAeAvEeFgGiL~ 146 (183)
++|.|. ..=++|..++.|+..-++..+...=..+++.........+... +++--| =-.|+|++..|..- .--.+..
T Consensus 182 L~sR~~-~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~-~~~r~~~ 259 (284)
T TIGR02880 182 FSSRVA-HHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR-QANRLFC 259 (284)
T ss_pred HHhhCC-cEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH-HHHHHhc
Confidence 344454 3457999999999888887766543567887777766655421 222222 44567776655221 1111222
Q ss_pred HHh--hhhhhcccCCcccc
Q 030055 147 NIK--MEFDDEIGLSGEFI 163 (183)
Q Consensus 147 sLr--meiDDl~GlSGEnV 163 (183)
... ...+||.+++.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~d~ 278 (284)
T TIGR02880 260 DLDRVLDKSDLETIDPEDL 278 (284)
T ss_pred CcCCCCCHHHHhCCCHHHH
Confidence 211 12478888877765
No 34
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=25.62 E-value=1.3e+02 Score=27.01 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=34.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 030055 77 VAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (183)
Q Consensus 77 ~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAG 124 (183)
+..+|...+.++..+++..-++ .|..+|.. ++..+...|.++.|+.+-
T Consensus 28 ~~~~~~~~~~~v~~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~ela~ 81 (478)
T cd07131 28 VGTFPLSTASDVDAAVEAAREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELAR 81 (478)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888877776543 69999876 566777777777776544
No 35
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=25.37 E-value=68 Score=26.71 Aligned_cols=49 Identities=8% Similarity=0.166 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHH
Q 030055 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKN 130 (183)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLkn 130 (183)
-|+-.|++..++.+...+|++..+.+...+.+.+.+..-|+-|+=-+..
T Consensus 120 ~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeE 168 (187)
T KOG0034|consen 120 FISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEE 168 (187)
T ss_pred cCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHH
Confidence 3888999999999999999998888889999999998888888754443
No 36
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=24.84 E-value=2.4e+02 Score=25.56 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=45.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----ccCCCchh----HHHHHHhhhcccCCchhHHHH-----------HHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA-----DWGELPAS----VIHDAKSALSRNNDDKAGQEV-----------LKNVFSA 134 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----sW~elp~s----vv~~ak~alSk~tDDkAGqea-----------LknvfrA 134 (183)
+-+..+|.....++..+++..-++ .|..+|.. ++..+.+.|.++.|+.+--.. +.+|.++
T Consensus 33 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~ 112 (481)
T cd07141 33 EKICEVQEGDKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGA 112 (481)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345567777888898888887775 59999976 456677777777776553221 3355555
Q ss_pred HHHHHHHHHH
Q 030055 135 AEAVEEFIGI 144 (183)
Q Consensus 135 AeAvEeFgGi 144 (183)
.+.++.+-+.
T Consensus 113 ~~~l~~~a~~ 122 (481)
T cd07141 113 IKVLRYYAGW 122 (481)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 37
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=24.62 E-value=89 Score=20.38 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=21.7
Q ss_pred HHHHHHHcccC--------CCchhHHHHHHhhh
Q 030055 91 AFKDLMAADWG--------ELPASVIHDAKSAL 115 (183)
Q Consensus 91 afKdLmAasW~--------elp~svv~~ak~al 115 (183)
.||.....+|+ .+|+..-..+|..|
T Consensus 39 ~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 39 LLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp HHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhhccCCCCCCHHHHHHHHHHH
Confidence 58999999999 89999888888765
No 38
>PF05480 Staph_haemo: Staphylococcus haemolytic protein; InterPro: IPR008846 This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus []. Gonococcal growth inhibitor from Staphylococcus acts on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death [].; GO: 0009405 pathogenesis
Probab=23.88 E-value=61 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhh
Q 030055 87 EIQRAFKDLMAADWGELPASVIHDAKSAL 115 (183)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~ak~al 115 (183)
.|.++.+.=...+|.+|--|.++.+.+.+
T Consensus 7 AI~n~V~Ag~~~Dwa~lgtsIv~iv~ngv 35 (43)
T PF05480_consen 7 AIKNTVQAGQNQDWAKLGTSIVDIVENGV 35 (43)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56777777888999999999999988754
No 39
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=23.70 E-value=1.7e+02 Score=26.21 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=40.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCc----hhHHHHHHhhhcccCCchhHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELP----ASVIHDAKSALSRNNDDKAGQEV 127 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp----~svv~~ak~alSk~tDDkAGqea 127 (183)
+-+..+|..+..++..|++..-.+ .|..+| ..++..+...|.++.|+.+....
T Consensus 25 ~~i~~~~~~~~~~v~~av~~a~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~ 85 (471)
T cd07139 25 EVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPAERAAVLRRLADALEARADELARLWT 85 (471)
T ss_pred CEeEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456778888888999999887776 399999 45677778888888777765433
No 40
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=23.32 E-value=67 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhhcc
Q 030055 133 SAAEAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALMNP 178 (183)
Q Consensus 133 rAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~~a 178 (183)
|.++|+..+|.-|+.|-..-=+ ++|||+.+.+||..+
T Consensus 13 Re~~~lq~Lg~~L~~L~~~ql~---------~lpL~e~l~~Ai~~a 49 (157)
T PF04751_consen 13 REMHALQDLGEELVELSPKQLA---------KLPLPEELRDAIMEA 49 (157)
T ss_dssp ---HHHHHHHHHHTTS-HHHHT---------TS---HHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCHHHHh---------hCCCCHHHHHHHHHH
Confidence 6889999999988877543222 349999999999765
No 41
>PLN02161 beta-amylase
Probab=23.21 E-value=53 Score=32.20 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhhc
Q 030055 136 EAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALMN 177 (183)
Q Consensus 136 eAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~~ 177 (183)
+.|.+.|=.|+-+ |.+---.|--|.+|++|||.|+.++.++
T Consensus 161 ~mvr~~GLKlq~v-mSFHqCGGNvGd~~~IpLP~WV~~~g~~ 201 (531)
T PLN02161 161 RLISEAGLKLHVA-LCFHSNMHLFGGKGGISLPLWIREIGDV 201 (531)
T ss_pred HHHHHcCCeEEEE-EEecccCCCCCCccCccCCHHHHhhhcc
Confidence 3444444332221 4454444455899999999999987654
No 42
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=22.96 E-value=7.6 Score=31.13 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHH------------HHhhh-----hhhcccCCccccCCCCchHHHHHhh
Q 030055 135 AEAVEEFIGIIM------------NIKME-----FDDEIGLSGEFINVMLPTWMHLALM 176 (183)
Q Consensus 135 AeAvEeFgGiL~------------sLrme-----iDDl~GlSGEnV~~PLPd~~~~Av~ 176 (183)
.++-.+.||+|+ .+++. |.|+.|+.-+++. ++|+.....+.
T Consensus 77 L~~yV~~GG~li~~~~tg~~d~~~~~~~~~~p~~L~~l~Gi~~~~~~-~l~~~~~~~~~ 134 (207)
T PF08532_consen 77 LRAYVENGGTLILTPRTGVKDENGRVREGGPPGPLRDLFGIRVEEFE-SLPPDESVSLD 134 (207)
T ss_dssp HHHHHT-SS-EEE-TTTT-B-TTS---TT-TTGGGGGTS--EEEEEE-E--TT--EEEE
T ss_pred HHHHHHCCCEEEEEcccCCcCCCCcCccCCCChhHHHhcCceEEEEE-ccCCCCceEEE
Confidence 344455588773 23444 8999999999999 88887544443
No 43
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=22.91 E-value=1.2e+02 Score=23.97 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=25.4
Q ss_pred CCCchhHHHHHHhhhcccCCchhHHHHHHHH
Q 030055 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNV 131 (183)
Q Consensus 101 ~elp~svv~~ak~alSk~tDDkAGqeaLknv 131 (183)
.++|+.+++..+.+|-+...+..|+++|+..
T Consensus 200 ~~~~~~~~~~l~~al~~~~~~~~~~~~l~~~ 230 (243)
T PF12974_consen 200 PDLPPELRQRLRDALLSLSKDPEGKAILDAF 230 (243)
T ss_dssp TTS-HHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHcCCCChhhHHHHHhc
Confidence 4588999999999999988888999888754
No 44
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=21.92 E-value=1e+02 Score=24.63 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccc
Q 030055 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIG 157 (183)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAv-EeFgGiL~sLrmeiDDl~G 157 (183)
.++..+.+++..|... +|..|-..-.++.+.+++..+=- .---+++...|+++ ++|||.+...+.+|-.+=|
T Consensus 39 t~~~~~~~~~~~l~~~~pt~~~l~~~~~~~L~~~ir~~G~~---~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~G 113 (191)
T TIGR01083 39 ATDKSVNKATKKLFEVYPTPQALAQAGLEELEEYIKSIGLY---RNKAKNIIALCRILVERYGGEVPEDREELVKLPG 113 (191)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCC
Confidence 4577777777777653 12111111122333333332211 11235666677775 6778766555555444433
No 45
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=21.66 E-value=5.7e+02 Score=24.06 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=40.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc----ccCCCchh----HHHHHHhhhcccCCchhHHHH
Q 030055 74 SEDVAHMPVIRDPEIQRAFKDLMAA----DWGELPAS----VIHDAKSALSRNNDDKAGQEV 127 (183)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~s----vv~~ak~alSk~tDDkAGqea 127 (183)
.+-+.++|.....|+.+|++..-++ .|..+|.. ++..+...|.++.|+.+--..
T Consensus 83 g~~i~~v~~~~~~dv~~Av~aA~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~ 144 (538)
T PLN02466 83 GEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSRILLRFADLLEKHNDELAALET 144 (538)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHcCcCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456678888999999999987776 49998865 466777788887777665433
No 46
>PTZ00226 fumarate hydratase; Provisional
Probab=21.58 E-value=2.2e+02 Score=28.19 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=51.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEe 140 (183)
+-..|-.|.=..|..+.++++-.-=..||+.+....++++.......-++.+|.+..+-|+..++
T Consensus 64 ~~~~m~~v~~e~l~~~~~~a~~~a~~~Lp~D~~~aL~~a~~d~E~s~~~k~vl~~iL~Na~iA~~ 128 (570)
T PTZ00226 64 GGKEILKVPPEALTKLTSYAFSDIQHFLRKSHLAQLRRILDDPEASDNDRFVAMTLLKNACIAAG 128 (570)
T ss_pred CCceeeeecHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHhc
Confidence 34455566533488999999988889999999999999998656666688888888887776655
No 47
>COG2427 Uncharacterized conserved protein [Function unknown]
Probab=20.93 E-value=79 Score=25.12 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 030055 80 MPVIRDPEIQRAFKDLMA 97 (183)
Q Consensus 80 lP~i~Dpei~~afKdLmA 97 (183)
|-.++||||++++.-|++
T Consensus 120 lk~LkDPdvq~~Lg~lls 137 (148)
T COG2427 120 LKALKDPDVQRGLGFLLS 137 (148)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 345789999999988775
Done!