Query 030055
Match_columns 183
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 12:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1svd_M Ribulose bisphosphate c 64.0 4.7 0.00016 30.5 2.8 30 70-100 10-39 (110)
2 1bwv_S Rubisco, protein (ribul 63.5 5.3 0.00018 31.5 3.1 31 71-101 2-32 (138)
3 1rbl_M Ribulose 1,5 bisphospha 62.2 5.7 0.00019 30.0 3.0 30 70-100 8-37 (109)
4 1wdd_S Ribulose bisphosphate c 62.0 5.1 0.00017 31.2 2.8 29 71-100 10-38 (128)
5 1bxn_I Rubisco, protein (ribul 60.8 5.7 0.00019 31.3 2.9 30 71-100 2-31 (139)
6 1gk8_I Ribulose bisphosphate c 57.9 6.5 0.00022 31.1 2.8 30 71-101 10-39 (140)
7 4f0h_B Ribulose bisphosphate c 52.0 11 0.00037 29.8 3.1 31 71-101 2-32 (138)
8 3zxw_B Ribulose bisphosphate c 40.4 16 0.00053 28.0 2.3 48 71-119 8-81 (118)
9 2r9i_A Putative phage capsid p 34.2 61 0.0021 25.7 4.9 45 92-148 6-50 (141)
10 3lns_A Benzaldehyde dehydrogen 34.2 50 0.0017 28.4 4.8 74 74-147 16-106 (457)
11 3iwj_A Putative aminoaldehyde 30.4 99 0.0034 27.0 6.1 77 75-151 34-131 (503)
12 1h6g_A Alpha-1 catenin; adhesi 30.2 65 0.0022 26.1 4.6 64 82-151 186-252 (256)
13 4flb_A Regulation of nuclear P 29.0 23 0.00079 25.3 1.6 35 83-118 94-131 (132)
14 3r84_A Mediator of RNA polymer 28.4 19 0.00064 26.3 1.0 48 109-158 22-76 (86)
15 2guz_B Mitochondrial import in 27.6 43 0.0015 22.5 2.7 35 83-117 19-58 (65)
16 4dng_A Uncharacterized aldehyd 26.8 62 0.0021 28.0 4.1 79 75-153 33-117 (485)
17 1v54_E Cytochrome C oxidase po 25.0 1.2E+02 0.0041 23.2 5.0 67 81-155 22-96 (109)
18 2y69_E Cytochrome C oxidase su 24.8 1.1E+02 0.0038 24.6 5.0 75 80-155 64-139 (152)
19 4gwp_A Mediator of RNA polymer 24.7 40 0.0014 26.0 2.3 37 120-158 36-79 (115)
20 2bsq_E FITA, trafficking prote 23.7 1.1E+02 0.0036 21.5 4.2 35 85-119 9-43 (77)
21 3ros_A NAD-dependent aldehyde 23.2 1.5E+02 0.0051 25.9 5.9 73 76-148 16-104 (484)
22 1bh9_B TAFII28; histone fold, 23.2 2.1E+02 0.0071 20.4 5.7 36 139-179 47-83 (89)
23 3u4j_A NAD-dependent aldehyde 23.1 72 0.0025 28.3 3.9 51 75-125 50-108 (528)
24 2w8n_A Succinate-semialdehyde 23.0 91 0.0031 27.1 4.5 50 75-124 37-92 (487)
25 2epj_A Glutamate-1-semialdehyd 23.0 2.2E+02 0.0075 22.7 6.4 55 84-138 73-135 (434)
26 1a4s_A ALDH, betaine aldehyde 22.7 92 0.0031 27.3 4.5 76 75-150 47-128 (503)
27 1euh_A NADP dependent non phos 22.4 36 0.0012 29.4 1.8 68 76-143 30-113 (475)
28 3hiu_A Uncharacterized protein 22.3 70 0.0024 25.0 3.3 31 121-152 87-121 (166)
29 2j9u_A VPS28, vacuolar protein 21.7 54 0.0018 24.2 2.4 20 133-152 6-25 (96)
30 2imp_A Lactaldehyde dehydrogen 21.7 61 0.0021 28.0 3.1 76 75-150 33-114 (479)
31 3icx_A PRE mRNA splicing prote 20.5 3.3E+02 0.011 22.8 7.3 51 102-152 71-121 (255)
32 2j9w_A VPS28, VPS28-PROV prote 20.2 64 0.0022 24.0 2.6 20 133-152 9-28 (102)
33 3etf_A Putative succinate-semi 20.0 2.2E+02 0.0074 24.3 6.2 74 76-149 19-108 (462)
No 1
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=63.99 E-value=4.7 Score=30.52 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 030055 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (183)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (183)
.|.|- ..+.||+++|.+|.+-..-|++-.|
T Consensus 10 ~~~~e-tfSyLP~lt~eqI~kQV~Yll~qGw 39 (110)
T 1svd_M 10 SLKYE-TFSYLPPMNAERIRAQIKYAIAQGW 39 (110)
T ss_dssp CCCCS-TTTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred Ccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 45554 7999999999999999999998776
No 2
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=63.51 E-value=5.3 Score=31.47 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.4
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (183)
|.--|..+.||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~Yll~qGw~ 32 (138)
T 1bwv_S 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 4445678999999999999999999998773
No 3
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=62.17 E-value=5.7 Score=30.01 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=25.9
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 030055 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (183)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (183)
.|.|- ..+.||+++|.+|.+-..-|++-.|
T Consensus 8 ~~~~e-tfSyLP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 8 ERRFE-TFSYLPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp CCCCS-TTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 45554 7999999999999999999998765
No 4
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=62.02 E-value=5.1 Score=31.22 Aligned_cols=29 Identities=14% Similarity=0.533 Sum_probs=24.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (183)
|.|- ..+.||+++|.+|.+-+..|++-.|
T Consensus 10 ~~~~-tfSyLP~lt~eqI~kQI~Yll~qGw 38 (128)
T 1wdd_S 10 KKFE-TLSYLPPLTVEDLLKQIEYLLRSKW 38 (128)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 4454 6999999999999999999998655
No 5
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=60.84 E-value=5.7 Score=31.33 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (183)
|.--|..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~YlL~qGw 31 (139)
T 1bxn_I 2 RITQGTFSFLPELTDEQITKQLEYCLNQGW 31 (139)
T ss_dssp CCCCSBTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444567899999999999999999998766
No 6
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=57.92 E-value=6.5 Score=31.11 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (183)
|.|- ..+.||+++|.+|.+-..-|++-.|.
T Consensus 10 ~~~e-tfSyLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 10 KMFE-TFSYLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred ceec-ccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 4454 79999999999999999999987774
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=51.97 E-value=11 Score=29.78 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (183)
|.=-+..+-||+++|.+|.+-..-|++-.|.
T Consensus 2 ~~t~~tfSyLP~ltd~qI~kQI~YlL~qGw~ 32 (138)
T 4f0h_B 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHhCCCE
Confidence 3334677899999999999999999998773
No 8
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=40.39 E-value=16 Score=28.03 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=33.4
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~ak~alSk~t 119 (183)
|.| |+.+-||+++|-+|.+-..-|++-.| + .|| +.|+.+++.|++...
T Consensus 8 kkf-eTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p 81 (118)
T 3zxw_B 8 RRY-ETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYP 81 (118)
T ss_dssp -------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCC
Confidence 556 68999999999999999999998655 4 565 567777777776543
No 9
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=34.24 E-value=61 Score=25.72 Aligned_cols=45 Identities=40% Similarity=0.461 Sum_probs=30.0
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030055 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (183)
Q Consensus 92 fKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sL 148 (183)
+|||+|.. +.+...+|.+-|.-|||-.-- .||+|||..-.|+..+
T Consensus 6 lkdllahr-----enlmdsakrarsaitddmdpa-------daaqavenvksiisei 50 (141)
T 2r9i_A 6 LKDLLAHR-----ENLMDSAKRARSAITDDMDPA-------DAAQAVENVKSIISEI 50 (141)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHCCTTSCHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhhccCCChH-------HHHHHHHHHHHHHHHH
Confidence 68888864 567778899999889886433 3455666555554433
No 10
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=34.20 E-value=50 Score=28.39 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=44.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH----------HHH-HHHHHHHH
Q 030055 74 SEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVL-KNVFSAAE 136 (183)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGq----------eaL-knvfrAAe 136 (183)
++.+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+-- |+. ..+.++++
T Consensus 16 ~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~ 95 (457)
T 3lns_A 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLH 95 (457)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHH
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4678899999999999888877654 69999864 5566677777777766543 333 25555555
Q ss_pred HHHHHHHHHHH
Q 030055 137 AVEEFIGIIMN 147 (183)
Q Consensus 137 AvEeFgGiL~s 147 (183)
.++.|.+.+..
T Consensus 96 ~~~~~a~~~~~ 106 (457)
T 3lns_A 96 EIDFALAHLDE 106 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 11
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=30.37 E-value=99 Score=27.01 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=54.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-------ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA-------DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFS 133 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-------sW~elp~s----vv~~ak~alSk~tDDkAG----------qeaLknvfr 133 (183)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.+
T Consensus 34 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~ 113 (503)
T 3iwj_A 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDD 113 (503)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345677888888999888877665 79999854 556667777777666553 355557778
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 030055 134 AAEAVEEFIGIIMNIKME 151 (183)
Q Consensus 134 AAeAvEeFgGiL~sLrme 151 (183)
+++.++.|.+.+..+.-+
T Consensus 114 ~~~~~~~~a~~~~~~~~~ 131 (503)
T 3iwj_A 114 VAGCFEYYADLAEKLDAR 131 (503)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888887777665433
No 12
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=30.22 E-value=65 Score=26.14 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhh---hcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030055 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSA---LSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKME 151 (183)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~ak~a---lSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrme 151 (183)
.-.||+..+-+++-...==+.+.+.+++.||.+ +++|.+|..-|..+.+ |.+....-...+|..
T Consensus 186 ~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~------a~~~L~~~v~~vr~a 252 (256)
T 1h6g_A 186 NYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFID------ASRLVYDGIRDIRKA 252 (256)
T ss_dssp TSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 445776655554431110112566799999998 7888888776766654 334444444444443
No 13
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=29.02 E-value=23 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHcccCC---CchhHHHHHHhhhccc
Q 030055 83 IRDPEIQRAFKDLMAADWGE---LPASVIHDAKSALSRN 118 (183)
Q Consensus 83 i~Dpei~~afKdLmAasW~e---lp~svv~~ak~alSk~ 118 (183)
+.||+.++.+..|+.+ |.+ .|+++++..+.+|+++
T Consensus 94 ~~~~~~~~kl~~ll~i-W~~r~vf~~~~i~~L~~~L~~s 131 (132)
T 4flb_A 94 VKDPSVSKSVERIFKI-WEDRNVYPEEMIVALREALSTT 131 (132)
T ss_dssp TCSTTTHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHTSC
T ss_pred hCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHhcc
Confidence 4678888888888876 655 8999999999988763
No 14
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=28.39 E-value=19 Score=26.34 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=31.7
Q ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhh---hhhcccC
Q 030055 109 HDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGII----MNIKME---FDDEIGL 158 (183)
Q Consensus 109 ~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL----~sLrme---iDDl~Gl 158 (183)
..+-.++..-++.|.|-+++|..|. +++.+|+..| +.||.| +||.+|-
T Consensus 22 ~~as~~i~tls~~k~~~~~~K~~F~--~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 22 QEASQVTFIFGELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHhhcccCCcHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444445444455556577888775 6788999877 467876 5777775
No 15
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=27.64 E-value=43 Score=22.54 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHcccCC--Cc---hhHHHHHHhhhcc
Q 030055 83 IRDPEIQRAFKDLMAADWGE--LP---ASVIHDAKSALSR 117 (183)
Q Consensus 83 i~Dpei~~afKdLmAasW~e--lp---~svv~~ak~alSk 117 (183)
.++.+|+++++.||..|=-+ -+ .+-|+.||..|.+
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999998766 55 5667788777755
No 16
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=26.78 E-value=62 Score=27.97 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=49.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sL 148 (183)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--..+..=-...|+-.|....+..|
T Consensus 33 ~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~ 112 (485)
T 4dng_A 33 SVITTASLATGKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAIL 112 (485)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345677888888888888877654 59999975 566667777777776664433333222333334555555555
Q ss_pred hhhhh
Q 030055 149 KMEFD 153 (183)
Q Consensus 149 rmeiD 153 (183)
|--.+
T Consensus 113 ~~~a~ 117 (485)
T 4dng_A 113 DEAMT 117 (485)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54333
No 17
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=25.03 E-value=1.2e+02 Score=23.22 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHH-------H-HHHHHHHHhhhh
Q 030055 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVE-------E-FIGIIMNIKMEF 152 (183)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvE-------e-FgGiL~sLrmei 152 (183)
|+|..=|+++++.+|.+-++=- +++|+..|-+|-.+-||=.. .-|--|+|. + .-=+|+.||--+
T Consensus 22 ~~iD~~e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~al-------AVR~lE~iK~K~~~~~~iY~~~lqElkPtl 93 (109)
T 1v54_E 22 PDIDAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFAS-------AVRILEVVKDKAGPHKEIYPYVIQELRPTL 93 (109)
T ss_dssp TTCCHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHH-------HHHHHHHHHHHTTTCTTHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHhcCchhhHHHHHHHHhhHH
Confidence 7788889999999999988743 34677777777777555322 223333332 2 222667777666
Q ss_pred hhc
Q 030055 153 DDE 155 (183)
Q Consensus 153 DDl 155 (183)
++|
T Consensus 94 ~EL 96 (109)
T 1v54_E 94 NEL 96 (109)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 18
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.76 E-value=1.1e+02 Score=24.62 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhc
Q 030055 80 MPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFI-GIIMNIKMEFDDE 155 (183)
Q Consensus 80 lP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFg-GiL~sLrmeiDDl 155 (183)
=|+|..=|+++.+.+|.+-++=- +++|+..|-+|--+-||=-.---.|+-|=-=.+.-++-+ =+|+.||--+++|
T Consensus 64 ~~~iD~wElrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~EL 139 (152)
T 2y69_E 64 KPDIDAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNEL 139 (152)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHh
Confidence 48888889999999999988743 345777777777775553322222222211111112222 2677777666554
No 19
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=24.74 E-value=40 Score=26.04 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=25.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhh---hhcccC
Q 030055 120 DDKAGQEVLKNVFSAAEAVEEFIGII----MNIKMEF---DDEIGL 158 (183)
Q Consensus 120 DDkAGqeaLknvfrAAeAvEeFgGiL----~sLrmei---DDl~Gl 158 (183)
+-|-|.+.+|.-|. +.+.+|+..| ++||.|| ||.+|-
T Consensus 36 elK~g~~~~K~qF~--~~~~~fY~~Ls~~a~~LRkEIK~lDeNiG~ 79 (115)
T 4gwp_A 36 ELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 79 (115)
T ss_dssp HHTTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccCccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 33445556666664 6788999877 5789885 888873
No 20
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=23.75 E-value=1.1e+02 Score=21.46 Aligned_cols=35 Identities=11% Similarity=-0.076 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccC
Q 030055 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNN 119 (183)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~ak~alSk~t 119 (183)
|++++.++|..=+.+=--+.+.+.....+++...+
T Consensus 9 pd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~~~ 43 (77)
T 2bsq_E 9 SEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQ 43 (77)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Confidence 56778888887777766666766666666665433
No 21
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=23.23 E-value=1.5e+02 Score=25.89 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=49.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHHHHHHHH
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFSAAEAVE 139 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAG----------qeaLknvfrAAeAvE 139 (183)
-+..+|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.++++.++
T Consensus 16 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~ 95 (484)
T 3ros_A 16 AFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKEEVELCVSICN 95 (484)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45678888888888888776654 69999875 566677777777776654 344456666666666
Q ss_pred HHHHHHHHH
Q 030055 140 EFIGIIMNI 148 (183)
Q Consensus 140 eFgGiL~sL 148 (183)
.|.+.+..+
T Consensus 96 ~~a~~~~~~ 104 (484)
T 3ros_A 96 YYADHGPEM 104 (484)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655544
No 22
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=23.21 E-value=2.1e+02 Score=20.41 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhcccCCccccCCCC-chHHHHHhhccc
Q 030055 139 EEFIGIIMNIKMEFDDEIGLSGEFINVML-PTWMHLALMNPI 179 (183)
Q Consensus 139 EeFgGiL~sLrmeiDDl~GlSGEnV~~PL-Pd~~~~Av~~a~ 179 (183)
-.|=|-|++.=+.+-|--| +.+ || |.|+..|.+.-.
T Consensus 47 KvfVgelVE~A~~V~~~~~----~~~-Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 47 KVFVGEVVEEALDVCEKWG----EMP-PLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCS-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----CCC-CCCcHHHHHHHHHHH
Confidence 3566666665555555543 345 55 899999987543
No 23
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=23.06 E-value=72 Score=28.28 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=38.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCchh----HHHHHHhhhcccCCchhHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELPAS----VIHDAKSALSRNNDDKAGQ 125 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~s----vv~~ak~alSk~tDDkAGq 125 (183)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|..+.|+.+--
T Consensus 50 ~~i~~~~~~~~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 108 (528)
T 3u4j_A 50 EVVGTWPEASADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALI 108 (528)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999888775 49999965 5666677777777766643
No 24
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=23.04 E-value=91 Score=27.13 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=35.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAG 124 (183)
+-+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+-
T Consensus 37 ~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 92 (487)
T 2w8n_A 37 AALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLAR 92 (487)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888776655 69999954 556666777777766554
No 25
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=23.04 E-value=2.2e+02 Score=22.70 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHccc-CCCchhHHHHHHhhhcccC--Cch-----hHHHHHHHHHHHHHHH
Q 030055 84 RDPEIQRAFKDLMAADW-GELPASVIHDAKSALSRNN--DDK-----AGQEVLKNVFSAAEAV 138 (183)
Q Consensus 84 ~Dpei~~afKdLmAasW-~elp~svv~~ak~alSk~t--DDk-----AGqeaLknvfrAAeAv 138 (183)
.+|+|.+|+++-+...| ...+.....+..+.|.+-. .+. -|.||+..++++|.+.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999887643 2345555555655554422 222 3999999999998754
No 26
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=22.68 E-value=92 Score=27.29 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=46.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sL 148 (183)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--..+..=--..||..|....+..|
T Consensus 47 ~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~ 126 (503)
T 1a4s_A 47 RVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCI 126 (503)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345678888888899888877665 69999964 566677777777776655433332212223333444444444
Q ss_pred hh
Q 030055 149 KM 150 (183)
Q Consensus 149 rm 150 (183)
|.
T Consensus 127 ~~ 128 (503)
T 1a4s_A 127 EY 128 (503)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 27
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=22.40 E-value=36 Score=29.42 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=42.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH----------HHHHHHHHHHHHHH
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVLKNVFSAAEAVE 139 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAGq----------eaLknvfrAAeAvE 139 (183)
-+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+-- |+..++.++++.++
T Consensus 30 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~ 109 (475)
T 1euh_A 30 ELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIIN 109 (475)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45567777777888877766554 69888854 5666667777776666543 33344444444444
Q ss_pred HHHH
Q 030055 140 EFIG 143 (183)
Q Consensus 140 eFgG 143 (183)
.+.+
T Consensus 110 ~~a~ 113 (475)
T 1euh_A 110 YAAE 113 (475)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 28
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=22.26 E-value=70 Score=25.02 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHhhhh
Q 030055 121 DKAGQEVLKNVFSAAEAVEEF----IGIIMNIKMEF 152 (183)
Q Consensus 121 DkAGqeaLknvfrAAeAvEeF----gGiL~sLrmei 152 (183)
..++.+++++.+ ||++||-| +|+|.++=..+
T Consensus 87 ~~~~d~v~d~~l-aaq~vEHyEIA~YgtL~a~A~~l 121 (166)
T 3hiu_A 87 SMMTDEVTKGVG-ISYAFEHLEIASYRALVVAARSA 121 (166)
T ss_dssp ---CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 345668899998 99999987 68888764443
No 29
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=21.70 E-value=54 Score=24.21 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 030055 133 SAAEAVEEFIGIIMNIKMEF 152 (183)
Q Consensus 133 rAAeAvEeFgGiL~sLrmei 152 (183)
-.||+|+-|..+.++||+.+
T Consensus 6 ~iAe~~~~FIT~mDaLKL~~ 25 (96)
T 2j9u_A 6 YVAEATGNFITVMDALKLNY 25 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 36999999999999999864
No 30
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=21.65 E-value=61 Score=28.03 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCch----hHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPA----SVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~----svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sL 148 (183)
+-+.++|..+..++..+++..-++ .|..+|. .++..+...|.++.|+.+--..+..=--..||..|....+..|
T Consensus 33 ~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l 112 (479)
T 2imp_A 33 AVISRIPDGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYI 112 (479)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345677888888888888776654 6999985 4566677777777666554333322111222333444444444
Q ss_pred hh
Q 030055 149 KM 150 (183)
Q Consensus 149 rm 150 (183)
|.
T Consensus 113 ~~ 114 (479)
T 2imp_A 113 DY 114 (479)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 31
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=20.47 E-value=3.3e+02 Score=22.83 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=35.3
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030055 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEF 152 (183)
Q Consensus 102 elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrmei 152 (183)
.+|+.++..+..+.+.+.--.-..+-|.++..+|+-|.+..-.-..|..-|
T Consensus 71 ~l~~~~~~~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl 121 (255)
T 3icx_A 71 GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYL 121 (255)
T ss_dssp TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888887777776655544556679999999999988665444443333
No 32
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=20.21 E-value=64 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 030055 133 SAAEAVEEFIGIIMNIKMEF 152 (183)
Q Consensus 133 rAAeAvEeFgGiL~sLrmei 152 (183)
-.||+|+-|..+.++||+.+
T Consensus 9 ~IAe~v~~FIT~mDaLKLn~ 28 (102)
T 2j9w_A 9 CIADIVSLFITVMDKLRLEI 28 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 46999999999999999864
No 33
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=20.02 E-value=2.2e+02 Score=24.33 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=50.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHHHHHHHH
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFSAAEAVE 139 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tDDkAG----------qeaLknvfrAAeAvE 139 (183)
-+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.++++.++
T Consensus 19 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~ 98 (462)
T 3etf_A 19 TLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCD 98 (462)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45567888888888888777654 69999864 555666677776665542 345567777777777
Q ss_pred HHHHHHHHHh
Q 030055 140 EFIGIIMNIK 149 (183)
Q Consensus 140 eFgGiL~sLr 149 (183)
.+.+.+..+.
T Consensus 99 ~~a~~~~~~~ 108 (462)
T 3etf_A 99 WYAEHGPAML 108 (462)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhHHHhc
Confidence 7777665443
Done!