Query 030055
Match_columns 183
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 12:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030055.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030055hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rrqa1 a.96.1.2 (A:9-229) Cat 66.9 2.6 0.00019 31.5 3.9 82 84-177 42-125 (221)
2 d1keaa_ a.96.1.2 (A:) Thymine- 65.0 2.8 0.0002 31.4 3.8 83 83-177 46-131 (217)
3 d1rbli_ d.73.1.1 (I:) Ribulose 64.0 2.3 0.00017 30.4 3.0 50 70-120 8-83 (109)
4 d1orna_ a.96.1.1 (A:) Endonucl 59.2 3.1 0.00022 31.0 3.0 88 84-183 44-134 (214)
5 d2fnaa1 a.4.5.11 (A:284-356) H 43.9 6 0.00044 26.5 2.2 30 82-111 35-71 (73)
6 d1svdm1 d.73.1.1 (M:3-110) Rib 42.5 8 0.00058 27.4 2.8 49 71-120 9-83 (108)
7 d1wdds_ d.73.1.1 (S:) Ribulose 37.7 10 0.00074 27.5 2.8 27 75-101 13-39 (122)
8 d2j9ua1 a.24.28.1 (A:148-241) 36.3 9.8 0.00071 26.5 2.4 20 133-152 5-24 (94)
9 d1o04a_ c.82.1.1 (A:) Aldehyde 34.0 7.5 0.00054 31.6 1.7 89 75-163 40-138 (494)
10 d1o6ba_ c.26.1.3 (A:) Phosphop 30.2 26 0.0019 22.5 3.7 39 80-120 123-162 (163)
11 d2abka_ a.96.1.1 (A:) Endonucl 29.8 7.1 0.00052 28.9 0.8 84 82-177 41-127 (211)
12 d1ky8a_ c.82.1.1 (A:) Non-phos 27.7 21 0.0016 28.6 3.5 82 75-156 41-129 (499)
13 d1bxni_ d.73.1.1 (I:) Ribulose 27.5 20 0.0014 26.0 2.9 45 76-120 7-77 (129)
14 d1li5a1 a.27.1.1 (A:316-402) C 27.5 67 0.0049 20.0 5.9 13 150-162 70-82 (87)
15 d1bwvs_ d.73.1.1 (S:) Ribulose 23.2 29 0.0021 25.5 3.1 45 76-120 7-77 (138)
16 d1gk8i_ d.73.1.1 (I:) Ribulose 22.9 26 0.0019 25.6 2.8 27 75-101 13-39 (126)
17 d1htaa_ a.22.1.2 (A:) Archaeal 21.7 80 0.0058 18.9 5.1 65 101-176 2-66 (68)
18 d1zoda1 c.67.1.4 (A:3-433) Dia 21.3 1.3E+02 0.0092 23.1 6.9 60 76-139 54-124 (431)
19 d1em8b_ c.126.1.1 (B:) DNA pol 21.2 11 0.00083 26.4 0.4 30 141-171 28-57 (110)
No 1
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=66.88 E-value=2.6 Score=31.47 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCcc
Q 030055 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGE 161 (183)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~GlSGE 161 (183)
+|.-+.++++.|+.. +|..|-..-..+.++.+...+=-. .+..-.=.+.+.+++|+|.+-. ..++|+.|-|
T Consensus 42 ~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~~~G~~~---ra~~l~~~~~~~~~~~~G~vp~---~~~~Ll~LpG- 114 (221)
T d1rrqa1 42 RVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYS---RVRNLHAAVKEVKTRYGGKVPD---DPDEFSRLKG- 114 (221)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHHTTSSCTH---HHHHHHHHHHHHHHHHTTCCCC---SHHHHHTSTT-
T ss_pred cHHHHHHHHHHHHHhcchHHHHHhhcHHHHHhhhccchhhh---hhHHHHHHHHHHhhhcCCCCch---HHHHHHHHHH-
Confidence 588889999999884 444433333455666666543322 2333333467888999996544 4566766665
Q ss_pred ccCCCCchHHHHHhhc
Q 030055 162 FINVMLPTWMHLALMN 177 (183)
Q Consensus 162 nV~~PLPd~~~~Av~~ 177 (183)
|| .++.++|..
T Consensus 115 -IG----~kTA~~il~ 125 (221)
T d1rrqa1 115 -VG----PYTVGAVLS 125 (221)
T ss_dssp -CC----HHHHHHHHH
T ss_pred -hh----hHHHHHHHH
Confidence 44 455555553
No 2
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=65.01 E-value=2.8 Score=31.42 Aligned_cols=83 Identities=7% Similarity=0.174 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcccCC
Q 030055 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIMNIKMEFDDEIGLS 159 (183)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeA-vEeFgGiL~sLrmeiDDl~GlS 159 (183)
-+|..+..+++.|+.. +|..|-..=..++++.++..+=- ..--++..++|+. +|+|||.+-.- .++|+.|-
T Consensus 46 T~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~---~~KA~~l~~~a~~i~~~~~g~~p~~---~~~L~~Lp 119 (217)
T d1keaa_ 46 TTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLS---NQRAEQLKELARVVINDYGGRVPRN---RKAILDLP 119 (217)
T ss_dssp SCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCH---HHHHHHHHHHHHHHHHHHTTSCCSC---HHHHHTST
T ss_pred CcHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhccCCcchh---hHHHHHHH
Confidence 4788999999999875 33333333345666666653311 2244667777775 56799965544 45555555
Q ss_pred ccccCCCCchHHHHHhhc
Q 030055 160 GEFINVMLPTWMHLALMN 177 (183)
Q Consensus 160 GEnV~~PLPd~~~~Av~~ 177 (183)
| || .++.++|.+
T Consensus 120 G--VG----~kTA~~il~ 131 (217)
T d1keaa_ 120 G--VG----KYTCAAVMC 131 (217)
T ss_dssp T--CC----HHHHHHHHH
T ss_pred h--hh----hhhhHHHHH
Confidence 4 34 345555544
No 3
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=64.02 E-value=2.3 Score=30.36 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=38.9
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccCC
Q 030055 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNND 120 (183)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~ak~alSk~tD 120 (183)
.|.| |+.|-||+++|.+|.+-...|++-.| . .|| +.|+.+.+.|++...+
T Consensus 8 ~~~~-eTfSyLP~Ltd~~I~~QV~yll~qGw~i~iE~ad~~~~~~~yW~mwklPmf~~~d~~~Vl~ele~c~~~~p~ 83 (109)
T d1rbli_ 8 ERRF-ETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGD 83 (109)
T ss_dssp CCCC-STTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTT
T ss_pred Cccc-cccccCCCCCHHHHHHHHHHHHhCCCceeEEEccCCCccceeeeecccCcccCCCHHHHHHHHHHHHHhCCc
Confidence 4666 79999999999999999999998654 4 565 3577777777766543
No 4
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=59.24 E-value=3.1 Score=30.96 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcccCCc
Q 030055 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIMNIKMEFDDEIGLSG 160 (183)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeA-vEeFgGiL~sLrmeiDDl~GlSG 160 (183)
+|.-+.++++.|+.. +|.++-..-..+.++.+...+= .....+|..++|+- +|+||| .+=...++|+.|-|
T Consensus 44 ~~~~v~~~~~~l~~~~pt~~~la~~~~~e~~~~i~~~g~---y~~ka~~l~~~a~~i~~~~~g---~vp~~~~~L~~LpG 117 (214)
T d1orna_ 44 TDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGL---YRNKARNIQKLCAMLIDKYNG---EVPRDRDELMKLPG 117 (214)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSS---HHHHHHHHHHHHHHHHHHSTT---SCCSCHHHHTTSTT
T ss_pred hHHHHHHHHhhhhcccCchhhhhhccHHHhhhhhhhhhh---hhHHHHHHHHHhhhHHHHhCC---CCCCCHHHHHhCcC
Q ss_pred cccCCCCchHHHHHhhcccccCC
Q 030055 161 EFINVMLPTWMHLALMNPICGRR 183 (183)
Q Consensus 161 EnV~~PLPd~~~~Av~~a~~~~~ 183 (183)
|| .++.++|..--.|+.
T Consensus 118 --VG----~kTA~~il~~a~~~~ 134 (214)
T d1orna_ 118 --VG----RKTANVVVSVAFGVP 134 (214)
T ss_dssp --CC----HHHHHHHHHHHHCCC
T ss_pred --cc----cchHHHHHHHHhcCC
No 5
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=43.90 E-value=6 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHcccC-------CCchhHHHHH
Q 030055 82 VIRDPEIQRAFKDLMAADWG-------ELPASVIHDA 111 (183)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~-------elp~svv~~a 111 (183)
.|.|+.+.+.++.|+--+|= .|||.|+..|
T Consensus 35 ~I~d~~ls~lL~nL~k~~~iek~~~~Y~i~DPv~~~a 71 (73)
T d2fnaa1 35 EISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCceeecCCeeccCcHHHHHh
Confidence 58899999999999999994 5788887654
No 6
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=42.54 E-value=8 Score=27.44 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=37.1
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC-------------------CCc-------hhHHHHHHhhhcccCC
Q 030055 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG-------------------ELP-------ASVIHDAKSALSRNND 120 (183)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~-------------------elp-------~svv~~ak~alSk~tD 120 (183)
+.| |+.|-||+++|-+|.+-...|++-.|. .|| +.|+.+.+.|++...+
T Consensus 9 ~~~-eTfSyLP~Ltde~I~~QV~yll~qGw~~~~E~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~c~~~~p~ 83 (108)
T d1svdm1 9 LKY-ETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPT 83 (108)
T ss_dssp CCC-STTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHHCCCEeeEeecccCCCcCceeeecCCCCcCCCcHHHHHHHHHHHHHHCCC
Confidence 444 588999999999999999999987663 454 4677777777665443
No 7
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=37.67 E-value=10 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=24.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHcccC
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAADWG 101 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (183)
|+.|-||+++|-+|.+-..-|++--|.
T Consensus 13 ETfSyLP~ltd~qI~~QI~yll~qGw~ 39 (122)
T d1wdds_ 13 ETLSYLPPLTVEDLLKQIEYLLRSKWV 39 (122)
T ss_dssp STTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred eeeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 588999999999999999999998773
No 8
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.32 E-value=9.8 Score=26.54 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 030055 133 SAAEAVEEFIGIIMNIKMEF 152 (183)
Q Consensus 133 rAAeAvEeFgGiL~sLrmei 152 (183)
-.||+++-|..++++||+.+
T Consensus 5 ~Vae~~~~FIT~mDaLkL~~ 24 (94)
T d2j9ua1 5 YVAEATGNFITVMDALKLNY 24 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 35899999999999999865
No 9
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=33.98 E-value=7.5 Score=31.57 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=64.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA-----DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGI 144 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----sW~elp~s----vv~~ak~alSk~tDDkAGqeaLknvfrAAeA-vEeFgGi 144 (183)
+.+..+|.-+..||..|++.--++ .|..+|.. ++..+...|.++.|+.+--+.+..=---.|+ .+|....
T Consensus 40 ~~i~~v~~a~~~dv~~Av~aA~~Af~~~~~W~~~~~~eRa~iL~~~a~~l~~~~eela~~~~~E~GK~~~ea~~~ev~~~ 119 (494)
T d1o04a_ 40 EVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMV 119 (494)
T ss_dssp EEEEEEECBCHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHhccchhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcchhhhhhhHHHHH
Confidence 456778888999999988765554 59999975 8888888999988888777666552222344 3567777
Q ss_pred HHHHhhhhhhcccCCcccc
Q 030055 145 IMNIKMEFDDEIGLSGEFI 163 (183)
Q Consensus 145 L~sLrmeiDDl~GlSGEnV 163 (183)
+..++.-.+..-.+.||.+
T Consensus 120 ~~~~~~~a~~~~~~~~~~~ 138 (494)
T d1o04a_ 120 LKCLRYYAGWADKYHGKTI 138 (494)
T ss_dssp HHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcCcee
Confidence 7777777777777777654
No 10
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=30.19 E-value=26 Score=22.45 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHcccCC-CchhHHHHHHhhhcccCC
Q 030055 80 MPVIRDPEIQRAFKDLMAADWGE-LPASVIHDAKSALSRNND 120 (183)
Q Consensus 80 lP~i~Dpei~~afKdLmAasW~e-lp~svv~~ak~alSk~tD 120 (183)
...||--+|++.++ ...+|.. +|++|.+-.|+...++++
T Consensus 123 ~~~ISST~IR~~i~--~g~~i~~lVP~~V~~yI~e~~~~~~~ 162 (163)
T d1o6ba_ 123 YSFLSSSIVKEVAR--YDGSVSEFVPPEVELALQQKFRQGGS 162 (163)
T ss_dssp TTTCCHHHHHHHHH--TTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred hhccCHHHHHHHHH--cCCChHHhCCHHHHHHHHHHHhccCC
Confidence 45688899998765 3668888 599999999988887653
No 11
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=29.77 E-value=7.1 Score=28.93 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhcccC
Q 030055 82 VIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAE-AVEEFIGIIMNIKMEFDDEIGL 158 (183)
Q Consensus 82 ~i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAe-AvEeFgGiL~sLrmeiDDl~Gl 158 (183)
--+|.-+.++++.|+.. +|..|-..-..+++++++..+=- ...-++..++|+ -+++|||.+-..+ ++|..|
T Consensus 41 qT~~~~v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~y---~~Ka~~l~~~a~~i~~~~~g~~p~~~---~~L~~L 114 (211)
T d2abka_ 41 QATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY---NSKAENIIKTCRILLEQHNGEVPEDR---AALEAL 114 (211)
T ss_dssp TSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTH---HHHHHHHHHHHHHHHHHTTTSCCSCH---HHHHHS
T ss_pred cchHHHHHHHHHHHHHhccChHHHHhhhHhHhHHHHHHhhhh---hhHHHHHHHHHHHHHHHhcCchhHHH---HHHHHH
Confidence 45688999999999874 44444444456677777763321 234467777777 5789999665544 555555
Q ss_pred CccccCCCCchHHHHHhhc
Q 030055 159 SGEFINVMLPTWMHLALMN 177 (183)
Q Consensus 159 SGEnV~~PLPd~~~~Av~~ 177 (183)
-| || .++.+||-+
T Consensus 115 pG--VG----~~TA~~Il~ 127 (211)
T d2abka_ 115 PG--VG----RKTANVVLN 127 (211)
T ss_dssp TT--CC----HHHHHHHHH
T ss_pred Hh--hc----hHHHHHHHH
Confidence 44 45 456666654
No 12
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]}
Probab=27.75 E-value=21 Score=28.60 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=51.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc---ccCCCch----hHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAA---DWGELPA----SVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMN 147 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa---sW~elp~----svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~s 147 (183)
+-+.++|..+..||..|.+..-++ +|..+|. .+...+...|.++.|+.+--..++-=--..+|..|+...+..
T Consensus 41 ~~i~~v~~a~~~dv~~Av~~A~~a~~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~etGk~~~~a~~Ev~~~i~~ 120 (499)
T d1ky8a_ 41 ATIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDR 120 (499)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhhhhhccccc
Confidence 346677888888888877544322 6888886 467777788888777766555443222234445566666666
Q ss_pred Hhhhhhhcc
Q 030055 148 IKMEFDDEI 156 (183)
Q Consensus 148 LrmeiDDl~ 156 (183)
++-..+.+-
T Consensus 121 ~~~~a~~~~ 129 (499)
T d1ky8a_ 121 LRLAELDLK 129 (499)
T ss_dssp HHGGGGGGT
T ss_pred ccchhhhhh
Confidence 665444433
No 13
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=27.51 E-value=20 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.447 Sum_probs=35.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccCC
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNND 120 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~ak~alSk~tD 120 (183)
..+-||+++|-+|.+-+..|++-.| . .|| ..|+.+++.|++...+
T Consensus 7 tfSyLP~Ltd~~I~~QV~yll~qG~~i~iE~ad~r~~r~~yW~mw~lPmf~~~d~~~Vl~ele~c~~e~p~ 77 (129)
T d1bxni_ 7 TFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPN 77 (129)
T ss_dssp BTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSS
T ss_pred eeccCCCCCHHHHHHHHHHHHHCCCEeeEEEecCcCcccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 4568999999999999999998765 3 553 6777777777776544
No 14
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=27.50 E-value=67 Score=20.02 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=9.8
Q ss_pred hhhhhcccCCccc
Q 030055 150 MEFDDEIGLSGEF 162 (183)
Q Consensus 150 meiDDl~GlSGEn 162 (183)
.++.+++|+-+++
T Consensus 70 ~~~~~vLGll~~~ 82 (87)
T d1li5a1 70 RKLSAVLGLLEQE 82 (87)
T ss_dssp HHHHTTTTCSCSC
T ss_pred HHHHhHcCCCCCC
Confidence 4678889987765
No 15
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=23.24 E-value=29 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.412 Sum_probs=34.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHcccC-------------------CCc-------hhHHHHHHhhhcccCC
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAADWG-------------------ELP-------ASVIHDAKSALSRNND 120 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW~-------------------elp-------~svv~~ak~alSk~tD 120 (183)
..+-||+++|.+|.+-..-|++-.|. .|| +.|+.+++.|++...+
T Consensus 7 tfSyLP~LtdeqI~~QV~yll~qGw~~~iE~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~ 77 (138)
T d1bwvs_ 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSN 77 (138)
T ss_dssp TTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTT
T ss_pred eeccCCCCCHHHHHHHHHHHHcCCCEeeeEeccccccccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 56689999999999999999987663 553 5666777777665443
No 16
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.88 E-value=26 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHcccC
Q 030055 75 EDVAHMPVIRDPEIQRAFKDLMAADWG 101 (183)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (183)
|+.|-||+++|-+|.+-..=++.-.|.
T Consensus 13 ETfSyLPpLtdeqI~kQI~Y~i~~GW~ 39 (126)
T d1gk8i_ 13 ETFSYLPPLTDEQIAAQVDYIVANGWI 39 (126)
T ss_dssp STTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred eecccCCCCCHHHHHHHHHHHHhcCCc
Confidence 589999999999999999999999995
No 17
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=21.72 E-value=80 Score=18.86 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccccCCCCchHHHHHhh
Q 030055 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGEFINVMLPTWMHLALM 176 (183)
Q Consensus 101 ~elp~svv~~ak~alSk~tDDkAGqeaLknvfrAAeAvEeFgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~~~Av~ 176 (183)
.|||-+.|...=+ ..+..+.++|++.-+ ++++|+|-.-|..-=.++-. - ++=|.=-|+++..||+
T Consensus 2 aeLP~a~I~ri~k---~~~~~ris~ea~~~l---~~~~e~fi~~l~~~a~~~a~---~--~kRkTi~~~DV~~Alk 66 (68)
T d1htaa_ 2 GELPIAPIGRIIK---NAGAERVSDDARIAL---AKVLEEMGEEIASEAVKLAK---H--AGRKTIKAEDIELARK 66 (68)
T ss_dssp CCSCHHHHHHHHH---HTTCSCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H--TTCSSCCHHHHHHHHH
T ss_pred CcCcHHHHHHHHH---HCCcchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H--hCCCcCCHHHHHHHHH
Confidence 4788877744322 235567888887654 67888998866543333322 1 2233234677777765
No 18
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}
Probab=21.33 E-value=1.3e+02 Score=23.07 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=43.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccc----CCCchhHHHHHHhhhccc--CCc-----hhHHHHHHHHHHHHHHHH
Q 030055 76 DVAHMPVIRDPEIQRAFKDLMAADW----GELPASVIHDAKSALSRN--NDD-----KAGQEVLKNVFSAAEAVE 139 (183)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW----~elp~svv~~ak~alSk~--tDD-----kAGqeaLknvfrAAeAvE 139 (183)
.++| .+|+|.+|+++-|..-+ .-+.+..++-|++-+... .-| ..|-||.+++.|.|++.-
T Consensus 54 ~lGh----~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t 124 (431)
T d1zoda1 54 VLGH----CHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT 124 (431)
T ss_dssp TTCB----TCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcC----CCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhc
Confidence 4566 68999999999887544 234566667777655432 223 469999999999999884
No 19
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit {Escherichia coli [TaxId: 562]}
Probab=21.23 E-value=11 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhhhcccCCccccCCCCchHH
Q 030055 141 FIGIIMNIKMEFDDEIGLSGEFINVMLPTWM 171 (183)
Q Consensus 141 FgGiL~sLrmeiDDl~GlSGEnV~~PLPd~~ 171 (183)
|+-||-+|+...++..-++-|.|+ .||.++
T Consensus 28 ~~dILrsm~L~~~q~~~lt~eql~-~L~~~~ 57 (110)
T d1em8b_ 28 VSDVLRALTVSPDQVLQLTPEKIA-MLPQGS 57 (110)
T ss_dssp HHHHHHHTTCCGGGEEEECTTGGG-GSCTTC
T ss_pred HHHHHHHcCCCHHHeeeeCHHHHh-hCCCCC
Confidence 555788899999999999999999 998764
Done!