BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030058
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1
Length = 345
Score = 281 bits (719), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/177 (77%), Positives = 154/177 (87%), Gaps = 1/177 (0%)
Query: 1 MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
M RF+N+KK + K KK Q V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1 MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60
Query: 60 PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+ LRVARTPQGPTLTFKIH+Y
Sbjct: 61 PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120
Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTV
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTV 177
>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2
Length = 470
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 107/149 (71%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFVF+RG+ +RQL +D+R++M P TA L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
+KT+++ YL++ R P GPTLTF+I +Y+L DV S R R + F PL+VL+ FG
Sbjct: 89 TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
H+KL MFQN+FP+I+++TV+ TI
Sbjct: 149 QGMHIKLMATMFQNLFPSINVHTVNLNTI 177
>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1
Length = 473
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 103/149 (69%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFVF+RG +RQL +D+R++M P TA L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
SKTE+ Y ++ R P GPTLTF++ +YSL DV S R R + F PL+VL+ FG
Sbjct: 89 SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
H+KL MFQN+FP+I+++ V+ TI
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTI 177
>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1
Length = 473
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 102/149 (68%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFVF+RG +RQL +D+R++M P TA L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
SKTE+ Y ++ P GPTLTF++ +YSL DV S R R + F PL+VL+ FG
Sbjct: 89 SKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGP 148
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
H+KL MFQN+FP+I+++ V+ TI
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTI 177
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 11 GFVKSFVKKK-QPTVDHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTALNLK 67
G K VKK+ D I IPKS V G ++ L L DLR +M PHTA+ LK
Sbjct: 3 GIGKKRVKKRTHLKADPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLK 62
Query: 68 EKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ 127
E+K N +KD+L +AGP+GVTH L+LS+T++ LR+ R P+GP+L F+IHEY L DV +
Sbjct: 63 ERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRR 122
Query: 128 SQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDI 173
Q P+ P F T PL+V++ F H L T FQN+FP I +
Sbjct: 123 LQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISV 172
>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3
SV=1
Length = 426
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 93/145 (64%)
Query: 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91
I KS V+ RG +++L + R++M P+TA L+E N KDF+N+A GV+H +
Sbjct: 45 ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVG 104
Query: 92 LSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG 151
S T+ Y+ +AR P+GPT TFKI EYS DVA++++RP + + SPL+VL+GF
Sbjct: 105 FSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFT 164
Query: 152 TGDQHLKLTTIMFQNIFPAIDINTV 176
G HL++ M Q++FP+I++ T+
Sbjct: 165 RGTPHLEMVQNMVQSLFPSINVYTL 189
>sp|Q9VDE5|PPAN_DROME Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1
Length = 460
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 92/149 (61%)
Query: 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
P SFV RG + L +D R++M P TA NL+EK+ N +KDF++++ V+H +
Sbjct: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87
Query: 93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
+K + +V R P+GP+LTFK+H+++LA DV + D FK +PL++++ F
Sbjct: 88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147
Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
+HLKL FQN+FP+I++ TV+ TI
Sbjct: 148 DGKHLKLMATTFQNMFPSINLATVNIGTI 176
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 15/156 (9%)
Query: 32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
IPKS V G+ L QL D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 89 FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
M +++E L++ARTPQGPT+TF++ +YSL D+ + RP+ D PL+
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 146 VLSGF------GTGDQHLKLTTI---MFQNIFPAID 172
VL+GF G DQ + + + MFQNIFP ++
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLN 177
>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1
Length = 453
Score = 116 bits (290), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 15/156 (9%)
Query: 32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
IPKS V G+ L QL D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81
Query: 89 FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
M +++E L++ARTPQGPT+TF++ +YSL D+ + RP+ D PL+
Sbjct: 82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141
Query: 146 VLSGFGTG------DQHLKLTTI---MFQNIFPAID 172
VL+GF T DQ + + + MFQNIFP ++
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLN 177
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 56 KLMLPHTALNLKEKKRNN--LKDFLNVAGPMGVTHFLMLSKTESAP-YLRVARTPQGPTL 112
KL+ P T++ L R N +K+ ++ G T ++L + P L ++ P GPT
Sbjct: 101 KLLFP-TSVRLN---RGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTA 156
Query: 113 TFKIHEYSLAVDV----AQSQLRPRCPQDLFKTSPL 144
+F +H L D+ QS++ P D F T+PL
Sbjct: 157 SFSLHNVVLRHDILNAGNQSEVHPHLIFDNF-TTPL 191
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 58 MLPHTALNLKEKKRNNLKDFLNVAGPMGVTH-FLMLSKTESAPYLRVARTPQGPTLTFKI 116
M+PH+ + K ++ L +A + F S+ YL +AR P GPT+ F +
Sbjct: 67 MMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHV 126
Query: 117 H 117
Sbjct: 127 E 127
>sp|Q8A9C3|PYRDB_BACTN Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit
OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM
2079 / NCTC 10582 / E50 / VPI-5482) GN=pyrD PE=3 SV=1
Length = 303
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 76 DFLNVAGPMGV-THFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC 134
DF+++A G+ L K E PY R+A TP G + + + VD Q+ PR
Sbjct: 32 DFIDIARIGGIIVKGTTLHKREGNPYPRMAETPSG--MLNAVGLQNKGVDYFVEQIYPRI 89
Query: 135 PQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQ-NIFPAIDIN 174
+T+ ++ +SG D ++K I+ + + PAI++N
Sbjct: 90 KD--IQTNMIVNVSGSAIED-YVKTAEIINELDKIPAIELN 127
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 74 LKDFLNVAGPMGVTHFLMLSKTESAP-YLRVARTPQGPTLTFKIHEYSLAVDV----AQS 128
+ D ++ G T ++L + P L V+ P GPT F +H L D+ QS
Sbjct: 122 MADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQS 181
Query: 129 QLRPRCPQDLFKTSPL 144
++ P D F T+PL
Sbjct: 182 EVNPHLIFDNF-TTPL 196
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2
Length = 291
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 5 RNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAL 64
++ KK+G VK F+ K++ + + SRG + R L DL L LPH+
Sbjct: 16 KSEKKQGNVKQFMNKQRTLL------------ISSRG-VNYRHRHLIQDLSGL-LPHSRK 61
Query: 65 NLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQGPTLTFKI 116
K + +L+ +A + L ++ YL +++ P GPT+ F I
Sbjct: 62 EPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYI 114
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 26 HITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNL--KDFLNVAGP 83
H G++ PK V + + L Q ++R L+ LN R N+ + A
Sbjct: 77 HRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLN-----RGNIVVGSLVEAARA 131
Query: 84 MGVTHFLMLSKTESAPY-LRVARTPQGPTLTFKIHEYSLAVDV 125
+T ++L + P L ++ P GPTL+F +H L D+
Sbjct: 132 NDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDI 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,169,216
Number of Sequences: 539616
Number of extensions: 2618383
Number of successful extensions: 5126
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5111
Number of HSP's gapped (non-prelim): 17
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)