Query 030058
Match_columns 183
No_of_seqs 126 out of 471
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2963 RNA-binding protein re 100.0 9.8E-52 2.1E-56 362.3 13.6 168 15-182 8-176 (405)
2 PF04427 Brix: Brix domain; I 100.0 3.7E-30 8.1E-35 208.5 7.8 139 37-182 1-141 (191)
3 KOG2781 U3 small nucleolar rib 100.0 8E-29 1.7E-33 209.9 12.0 132 31-174 81-213 (290)
4 KOG2780 Ribosome biogenesis pr 99.9 8E-28 1.7E-32 205.7 10.9 129 32-172 96-225 (302)
5 KOG2971 RNA-binding protein re 99.9 2.2E-26 4.7E-31 195.8 12.1 130 34-171 51-182 (299)
6 smart00879 Brix Brix domain. T 99.9 2.7E-24 5.9E-29 171.5 13.6 138 36-182 1-141 (180)
7 COG5154 BRX1 RNA-binding prote 99.9 2.7E-23 5.8E-28 173.6 11.2 130 32-169 30-161 (283)
8 PRK03972 ribosomal biogenesis 99.9 1.7E-21 3.8E-26 162.5 13.1 125 35-170 2-132 (208)
9 COG2136 IMP4 Predicted exosome 99.8 2.1E-18 4.6E-23 142.6 12.1 129 33-171 2-136 (191)
10 PRK00933 ribosomal biogenesis 97.6 0.00056 1.2E-08 55.7 9.0 83 36-126 2-85 (165)
11 KOG3031 Protein required for b 92.9 0.2 4.3E-06 44.3 5.1 139 34-182 28-178 (307)
12 PRK03972 ribosomal biogenesis 85.8 6.3 0.00014 33.4 8.5 78 32-117 105-188 (208)
13 PRK13605 endoribonuclease SymE 55.6 11 0.00025 29.0 2.6 44 31-80 62-105 (113)
14 smart00546 CUE Domain that may 54.5 5.1 0.00011 24.8 0.4 18 160-177 5-22 (43)
15 PF02845 CUE: CUE domain; Int 52.4 3.5 7.7E-05 25.5 -0.6 17 161-177 5-21 (42)
16 PF01206 TusA: Sulfurtransfera 38.9 60 0.0013 21.6 3.9 60 42-103 9-68 (70)
17 KOG3031 Protein required for b 33.1 65 0.0014 28.8 4.1 72 82-155 173-262 (307)
18 cd03412 CbiK_N Anaerobic cobal 29.9 2.1E+02 0.0045 21.7 6.0 59 35-94 3-78 (127)
19 cd00291 SirA_YedF_YeeD SirA, Y 26.8 1.9E+02 0.004 18.8 5.1 50 44-94 10-59 (69)
20 cd03416 CbiX_SirB_N Sirohydroc 24.3 2.6E+02 0.0056 19.6 5.9 57 35-92 2-64 (101)
21 cd00861 ProRS_anticodon_short 24.0 1.9E+02 0.004 19.7 4.5 64 46-113 19-83 (94)
22 cd00860 ThrRS_anticodon ThrRS 23.4 2.4E+02 0.0051 18.9 5.9 72 35-110 4-77 (91)
23 PF02172 KIX: KIX domain; Int 23.3 70 0.0015 23.1 2.1 19 158-176 17-35 (81)
24 PF04921 XAP5: XAP5, circadian 22.9 2.2E+02 0.0048 24.7 5.5 70 30-118 109-186 (239)
25 cd00858 GlyRS_anticodon GlyRS 22.5 2.8E+02 0.0061 20.4 5.5 76 33-113 27-106 (121)
26 cd01460 vWA_midasin VWA_Midasi 22.3 1E+02 0.0022 26.9 3.4 39 47-85 2-45 (266)
27 PF06968 BATS: Biotin and Thia 20.9 71 0.0015 23.0 1.8 45 46-91 23-67 (93)
28 PF06781 UPF0233: Uncharacteri 20.9 62 0.0013 23.8 1.5 16 9-24 1-16 (87)
29 cd00859 HisRS_anticodon HisRS 20.5 2.5E+02 0.0054 18.3 4.5 76 34-113 3-80 (91)
30 COG0124 HisS Histidyl-tRNA syn 20.0 3.9E+02 0.0085 25.0 6.9 76 30-109 333-410 (429)
No 1
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-52 Score=362.32 Aligned_cols=168 Identities=55% Similarity=0.840 Sum_probs=158.8
Q ss_pred hhhhccCCCCCCCCCCCCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEe
Q 030058 15 SFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSK 94 (183)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~ 94 (183)
+++.++...+.+++..+.|+|+|+++|-.++++++|..|||++|+||||++|+|++.|+||||+.+|+++|||||++|+.
T Consensus 8 K~~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lsk 87 (405)
T KOG2963|consen 8 KRTHAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSK 87 (405)
T ss_pred hhhhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEec
Confidence 34455555566777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEeCCCCCeEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCC-chhHHHHHHHHhcCCCCCC
Q 030058 95 TESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDI 173 (183)
Q Consensus 95 ~~~~~~L~i~~lP~GPTl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~-~h~~lv~~mfq~lFP~i~~ 173 (183)
++..++|+|+|+|+|||+||+|..|+|.+||.++++||+++...|+|+||||||||++.. .|++|+++|||||||+|||
T Consensus 88 t~~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv 167 (405)
T KOG2963|consen 88 TETNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINV 167 (405)
T ss_pred ccCceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCc
Confidence 999999999999999999999999999999999999999998889999999999999986 8999999999999999999
Q ss_pred CccccCcee
Q 030058 174 NTVSDQTII 182 (183)
Q Consensus 174 ~~~~l~~~~ 182 (183)
++|+|++|+
T Consensus 168 ~tvnlntik 176 (405)
T KOG2963|consen 168 ATVNLNTIK 176 (405)
T ss_pred ceeecccee
Confidence 999999985
No 2
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=99.96 E-value=3.7e-30 Score=208.52 Aligned_cols=139 Identities=33% Similarity=0.543 Sum_probs=77.5
Q ss_pred EEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeEEEE
Q 030058 37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK 115 (183)
Q Consensus 37 V~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl~F~ 115 (183)
|++++++++++++|++||+.+| |.++.+++..+.|.++|++++|..++|+|+++|+++++. .+|||+++|+|||++|+
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~-~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~ 79 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLF-PPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS 79 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS--TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHc-CCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence 6899999999999999999999 667889997777799999999999999999999999984 89999999999999999
Q ss_pred EeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCC-chhHHHHHHHHhcCCCCCCCccccCcee
Q 030058 116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVSDQTII 182 (183)
Q Consensus 116 V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~-~h~~lv~~mfq~lFP~i~~~~~~l~~~~ 182 (183)
|++|.+++|+.++.+++ ..++|+||||||+++. +|++++++||++|||..+++++.+..++
T Consensus 80 I~~~~~~~~~~~~~~~~------~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~ 141 (191)
T PF04427_consen 80 IENYKLMKDIKSSSKRP------KGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGID 141 (191)
T ss_dssp EEEEE-HHHHT-------------S---EEEEE-----------------------------------
T ss_pred EEeEEEhhHhcccccCC------CCCCeEEEEEecccccccccccccccccccccccccccccccccc
Confidence 99999999998764422 2467999999999875 7899999999999999999998877653
No 3
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=99.96 E-value=8e-29 Score=209.88 Aligned_cols=132 Identities=20% Similarity=0.370 Sum_probs=121.3
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCC
Q 030058 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG 109 (183)
Q Consensus 31 ~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~G 109 (183)
.+||++|++|+.+|+++.+|+++|+.|+ || |.+++ |+.+.+.+++++|...|+|++++++|+++. .+|.|+|||.|
T Consensus 81 ~dPKimvTTSR~PSsrL~~FaKelkLvf-PN-aqr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfG 157 (290)
T KOG2781|consen 81 EDPKIMVTTSRDPSSRLKMFAKELKLVF-PN-AQRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFG 157 (290)
T ss_pred CCCcEEEEeCCCchHHHHHHHHhheEec-cC-hhhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCC
Confidence 4799999999999999999999999997 99 67887 888999999999999999999999999998 79999999999
Q ss_pred CeEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCCC
Q 030058 110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDIN 174 (183)
Q Consensus 110 PTl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~~ 174 (183)
||++|.+.|+.+.+||.+. |......|.||||||.+.+ |+++++++..|||....+
T Consensus 158 PTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~l--G~Rv~~iLkhLFP~pk~d 213 (290)
T KOG2781|consen 158 PTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKL--GKRVKTILKHLFPVPKDD 213 (290)
T ss_pred CceEeeeeeeeeccccccc-------ccccccCceEEeccccchH--HHHHHHHHHHhCCCCcCC
Confidence 9999999999999999875 4444568999999999999 579999999999955444
No 4
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=99.95 E-value=8e-28 Score=205.71 Aligned_cols=129 Identities=19% Similarity=0.343 Sum_probs=119.2
Q ss_pred CCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 030058 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP 110 (183)
Q Consensus 32 ~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GP 110 (183)
.||+||+++..+......|+.+|+.++ ||+.. +.|+...+|.++++|..+++||+||++++++. .+|.|+|+|+||
T Consensus 96 spKvlITt~~~~~~~t~~~~~eL~~ii-PNs~~--~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GP 172 (302)
T KOG2780|consen 96 SPKVLITTSKNPKRTTYKFASELLDII-PNSTV--KKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGP 172 (302)
T ss_pred CccEEEEcCCCCcccHHHHHHHHHHhC-CCceE--EecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCC
Confidence 699999999999999999999999996 99755 44568999999999999999999999999877 899999999999
Q ss_pred eEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCC
Q 030058 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAID 172 (183)
Q Consensus 111 Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~ 172 (183)
|++|+++||++.+||++. |+.+.|.|+||+|||+|++|| .|++|||+|||+-.
T Consensus 173 T~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG~--~v~r~f~sLfp~~p 225 (302)
T KOG2780|consen 173 TAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLGM--TVGRLFASLFPHDP 225 (302)
T ss_pred ceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhhH--HHHHHHHHhCCCCc
Confidence 999999999999999876 677889999999999999954 99999999999743
No 5
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.2e-26 Score=195.78 Aligned_cols=130 Identities=22% Similarity=0.366 Sum_probs=122.7
Q ss_pred cEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeE
Q 030058 34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL 112 (183)
Q Consensus 34 k~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl 112 (183)
+++|+++++++.+.+|||+|+..+| ||+..+-+..++.++-.+.++|+..+|+.+++|+++++. +||||+..|+|||+
T Consensus 51 rvlv~ssRgis~R~RhLm~di~~Ll-ph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSv 129 (299)
T KOG2971|consen 51 RVLVLSSRGISFRTRHLMKDISSLL-PHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSV 129 (299)
T ss_pred eEEEEecCCchHHHHHHHHHHHHhc-ccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCce
Confidence 6999999999999999999999998 999999888888899999999999999999999999876 89999999999999
Q ss_pred EEEEeeeEehhhhhhhcCCCCCCCCCCC-CCcEEEcCCCCCCCchhHHHHHHHHhcCCCC
Q 030058 113 TFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSGFGTGDQHLKLTTIMFQNIFPAI 171 (183)
Q Consensus 113 ~F~V~n~~l~~DI~~~~k~~~~~g~~~~-~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i 171 (183)
.|.|+|+++|+|+. ++|||++ ++|+|-||.-++..+|++++..+|++.|...
T Consensus 130 kFlv~n~hTM~Elk-------mtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP 182 (299)
T KOG2971|consen 130 KFLVHNVHTMAELK-------MTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIP 182 (299)
T ss_pred EEehhhhhhHHHhC-------CccccccCCcceeecccccccchHHHHHHHHHHHHcCCC
Confidence 99999999999997 4599996 9999999999999999999999999999443
No 6
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=99.92 E-value=2.7e-24 Score=171.49 Aligned_cols=138 Identities=28% Similarity=0.410 Sum_probs=113.4
Q ss_pred EEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCC-CCceEEEEEecC-CC-CceEEEeCCCCCeE
Q 030058 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKTE-SA-PYLRVARTPQGPTL 112 (183)
Q Consensus 36 lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~-g~Thllv~~~~~-~~-~~L~i~~lP~GPTl 112 (183)
||++++++++++++|++||+.+|.|+++. .|+++.+.++.+.|... +++++++++.+. +. .+|||+++|+|||+
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~---~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l 77 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKI---NRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL 77 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEee---cccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence 58999999999999999999999555433 35667778888887777 677777777653 33 79999999999999
Q ss_pred EEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCCCccccCcee
Q 030058 113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTII 182 (183)
Q Consensus 113 ~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~~~~~l~~~~ 182 (183)
+|.+.+|++.+|+......+ ....++|+||||||+++.+ +++++||+.|||..++.++++..++
T Consensus 78 ~f~i~~v~~~~~~~~~~~~~----~~~~~~P~li~~~~~~~~~--~~~k~~l~~~F~~~~~~~~~~~~~~ 141 (180)
T smart00879 78 DFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTELG--KLIKELFQDLFPGPPEHKKSLPGLR 141 (180)
T ss_pred EEEEECcccHhhhhhhhcCC----CcCCCccEEEECCCCCchH--HHHHHHHHHHCCCCCccccccCCCC
Confidence 99999999999998754321 1245899999999999984 7999999999999999988776653
No 7
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.7e-23 Score=173.62 Aligned_cols=130 Identities=24% Similarity=0.397 Sum_probs=122.1
Q ss_pred CCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 030058 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP 110 (183)
Q Consensus 32 ~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GP 110 (183)
..+++|+++++++.+.+||++||-.+| ||+...-|.+-+..+-++.++|..++|..+++|+.++.. +|||+++.|+||
T Consensus 30 kq~~lilSsRGvsyr~RHL~~Dls~l~-phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp 108 (283)
T COG5154 30 KQTSLILSSRGVSYRIRHLMKDLSRLV-PHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP 108 (283)
T ss_pred cceEEEEecCCchHHHHHHHHHHHHhC-cccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence 458999999999999999999999998 999888888888889999999999999999999999876 899999999999
Q ss_pred eEEEEEeeeEehhhhhhhcCCCCCCCCCCC-CCcEEEcCCCCCCCchhHHHHHHHHhcCC
Q 030058 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSGFGTGDQHLKLTTIMFQNIFP 169 (183)
Q Consensus 111 Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~-~~PlLIlNnF~t~~~h~~lv~~mfq~lFP 169 (183)
|+.|+++|.++|+|+.. +||+++ ++|.|-||--+...+|++.+..++++.|.
T Consensus 109 tvkF~~~NlhTMdelNf-------tgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ 161 (283)
T COG5154 109 TVKFRMHNLHTMDELNF-------TGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFG 161 (283)
T ss_pred eEEEEEeccchHhhcCC-------ccccccCCcceEeeccccccchHHHHHHHHHHHhcc
Confidence 99999999999999964 489996 99999999999999999999999999994
No 8
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.87 E-value=1.7e-21 Score=162.49 Aligned_cols=125 Identities=14% Similarity=0.241 Sum_probs=105.7
Q ss_pred EEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCC---CC
Q 030058 35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ---GP 110 (183)
Q Consensus 35 ~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~---GP 110 (183)
++|++|+++|.++++|++||..++ ||+ .. ..|++++|+|+++.|...|+|++++++|+++. .+|.|+|||. ||
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~-Pns-~~-i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP 78 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVF-PNS-LY-LTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY 78 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhC-CCC-EE-EecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence 689999999999999999999997 996 33 45889999999999999999999999999988 7999999985 55
Q ss_pred eEEEEEeeeEehhhhh--hhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCC
Q 030058 111 TLTFKIHEYSLAVDVA--QSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA 170 (183)
Q Consensus 111 Tl~F~V~n~~l~~DI~--~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~ 170 (183)
|++|+|+|+.+.+||. +. |....|.|++|.+||.++.++ ...+..+.+.+.-
T Consensus 79 Ta~FkLsnV~l~~ei~~~~~-------~~~s~~~p~iItts~kt~~g~-~~~Ak~lA~eLgi 132 (208)
T PRK03972 79 LGYLYLHGIKLQREMGFRNL-------RPIREDMPLVITTAKRVGLDH-MAFAQVFAELTGG 132 (208)
T ss_pred eEEEEEccEEEHHHcccCCC-------CCccccccEEEEcCCCCCHHH-HHHHHHHHHHhCC
Confidence 9999999999999993 33 445568999999999999875 3344445444443
No 9
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.78 E-value=2.1e-18 Score=142.58 Aligned_cols=129 Identities=19% Similarity=0.306 Sum_probs=114.9
Q ss_pred CcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeC-CCCC
Q 030058 33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQGP 110 (183)
Q Consensus 33 Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~l-P~GP 110 (183)
||.+||||+++|.++++|++||..++ ||+.. ++ |++.++.++.+.|...|.+++++++|.++. ..|.+.++ |+||
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~l-p~~~~-~~-rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~ 78 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVL-PNAYF-LR-RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL 78 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhC-CcceE-Ee-cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence 89999999999999999999999997 99754 34 578899999999999999999999999999 69999999 9999
Q ss_pred eEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhc----CCCC
Q 030058 111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAI 171 (183)
Q Consensus 111 Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~l----FP~i 171 (183)
++.|.+.++++.+|+..+... .-.+.|++|+|||.+.++| ..+.++|+.+ |++-
T Consensus 79 ~~~f~l~~v~l~re~~~~~~~------~~~~~~~~I~~~~~~~~g~-~~~~~~~~~~~~~~f~~~ 136 (191)
T COG2136 79 TFSFKLSGVKLRREIPVLGPK------SRLHGPELIFNNFTTLLGF-LKVAEAFSELLLVKFVPN 136 (191)
T ss_pred eEEEEEecceEEEeccccCCc------ccCCCCceeeecccccccc-hhhHHHHHhhcccccccC
Confidence 999999999999999876321 2347899999999999974 7899999999 7654
No 10
>PRK00933 ribosomal biogenesis protein; Validated
Probab=97.57 E-value=0.00056 Score=55.67 Aligned_cols=83 Identities=13% Similarity=0.280 Sum_probs=67.9
Q ss_pred EEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeEEE
Q 030058 36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF 114 (183)
Q Consensus 36 lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl~F 114 (183)
+|||+++++..++++++||-..+ |+ .+..|++.+++++.+.|.. .++++++|+++. ..|.|...-.-+.+.+
T Consensus 2 IITTSrkPs~~t~~fAkeLa~~l--n~--~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~ 74 (165)
T PRK00933 2 IITTSRKPSQRTRSLVKDLARFL--NC--KYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY 74 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh--CC--EEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence 79999999999999999999997 54 4566899999999887654 399999999988 7999999877777777
Q ss_pred EEeeeEehhhhh
Q 030058 115 KIHEYSLAVDVA 126 (183)
Q Consensus 115 ~V~n~~l~~DI~ 126 (183)
.+. +.+..|..
T Consensus 75 ~~~-v~~~~~~~ 85 (165)
T PRK00933 75 RLS-VKLQREIS 85 (165)
T ss_pred EEE-eeeecccC
Confidence 663 45555553
No 11
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=0.2 Score=44.26 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=101.6
Q ss_pred cEEEEcCC-CCCccHHHHHHHHhHhcCCCcccccccccCCCHH------HHHHhhcCCCCceEEEEEecCCC-CceEEEe
Q 030058 34 KSFVFSRG-KLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLK------DFLNVAGPMGVTHFLMLSKTESA-PYLRVAR 105 (183)
Q Consensus 34 k~lV~~~g-~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lk------d~v~~a~~~g~Thllv~~~~~~~-~~L~i~~ 105 (183)
+..++..| .++..+.+.|.|+-.+=-|.+ .++. ++|++. -+..+.....|+-+++-+.+.+- .+|.|.|
T Consensus 28 k~alf~~g~~~~~tl~~vm~dl~alKKp~~-i~~~--rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR 104 (307)
T KOG3031|consen 28 KDALFLPGMKTNKTLLDVMKDLYALKKPLE-IRYN--RKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGR 104 (307)
T ss_pred hhhhccCchhhchHHHHHHHHHHHhccCce-eeec--cCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEE
Confidence 34455555 567788999999999988974 4444 445554 34566667777777666666655 7999998
Q ss_pred CCCCCe---EEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCC-CCCchhHHHHHHHHhcCCCCCCCccccCce
Q 030058 106 TPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG-TGDQHLKLTTIMFQNIFPAIDINTVSDQTI 181 (183)
Q Consensus 106 lP~GPT---l~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~-t~~~h~~lv~~mfq~lFP~i~~~~~~l~~~ 181 (183)
+=++=- +-+.|.||....|...+. .+. .+.|.|+|+|+. ...+.++++.++|-..|---.++++.|..+
T Consensus 105 ~fd~~vlDMiElgI~~ykslsdF~~~k-----~~~--gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl 177 (307)
T KOG3031|consen 105 TFDYEVLDMIELGIENYKSLSDFKAAK-----ITE--GTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGL 177 (307)
T ss_pred ecCchhhHHHHHhhhhhhhhhhhhccC-----CCC--CCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccc
Confidence 765543 457889999999987652 112 367999999984 344558999999999999999999988765
Q ss_pred e
Q 030058 182 I 182 (183)
Q Consensus 182 ~ 182 (183)
+
T Consensus 178 ~ 178 (307)
T KOG3031|consen 178 E 178 (307)
T ss_pred c
Confidence 4
No 12
>PRK03972 ribosomal biogenesis protein; Validated
Probab=85.85 E-value=6.3 Score=33.38 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCCCceEEEe------
Q 030058 32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVAR------ 105 (183)
Q Consensus 32 ~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~~~L~i~~------ 105 (183)
-| -+|+++.+++....+..+.+-..+ ...+-+|++.++.++. ...+..+++|+..+-.+..+.+-+
T Consensus 105 ~p-~iItts~kt~~g~~~~Ak~lA~eL----gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~~~~~~~~~~~~~ 176 (208)
T PRK03972 105 MP-LVITTAKRVGLDHMAFAQVFAELT----GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRGMAVNFYRLDVTKE 176 (208)
T ss_pred cc-EEEEcCCCCCHHHHHHHHHHHHHh----CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCceEEEEEEeccccc
Confidence 45 378888888887888888887776 2334568888888665 445678899998888776666666
Q ss_pred CCCCCeEEEEEe
Q 030058 106 TPQGPTLTFKIH 117 (183)
Q Consensus 106 lP~GPTl~F~V~ 117 (183)
-|-||.+..++-
T Consensus 177 ~~~~~~~~~~~~ 188 (208)
T PRK03972 177 RPVGPLIFVKIW 188 (208)
T ss_pred cccCCcEEEEEE
Confidence 488999988874
No 13
>PRK13605 endoribonuclease SymE; Provisional
Probab=55.65 E-value=11 Score=29.00 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHh
Q 030058 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNV 80 (183)
Q Consensus 31 ~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~ 80 (183)
-.+-+|||+.........+|++.||++- +|..|++..+.+|+++
T Consensus 62 V~~G~LVIt~~~~~~~~~el~~~l~~v~------~~s~~kq~q~~~fi~v 105 (113)
T PRK13605 62 VMEGCIVLTAQPPAAEESELMQSLRQVC------KLSARKQKQVQEFIGV 105 (113)
T ss_pred EeCCEEEEEeCCCCcccHHHHHHHHHHH------HhhhHHHHHHHHHHHH
Confidence 3568999999999999999999999993 5677888889999875
No 14
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=54.46 E-value=5.1 Score=24.84 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCCCCCccc
Q 030058 160 TTIMFQNIFPAIDINTVS 177 (183)
Q Consensus 160 v~~mfq~lFP~i~~~~~~ 177 (183)
....++.|||.++...|+
T Consensus 5 ~v~~L~~mFP~l~~~~I~ 22 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIK 22 (43)
T ss_pred HHHHHHHHCCCCCHHHHH
Confidence 346789999999887663
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=52.40 E-value=3.5 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=12.5
Q ss_pred HHHHHhcCCCCCCCccc
Q 030058 161 TIMFQNIFPAIDINTVS 177 (183)
Q Consensus 161 ~~mfq~lFP~i~~~~~~ 177 (183)
-..+++|||.++.+.+.
T Consensus 5 v~~L~~mFP~~~~~~I~ 21 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIE 21 (42)
T ss_dssp HHHHHHHSSSS-HHHHH
T ss_pred HHHHHHHCCCCCHHHHH
Confidence 36799999999877653
No 16
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=38.90 E-value=60 Score=21.59 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=41.0
Q ss_pred CCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCCCceEE
Q 030058 42 KLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRV 103 (183)
Q Consensus 42 ~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~~~L~i 103 (183)
.+...+-.+.+-|+.+ .|.....+.-.......|+..+|...|++ ++-+++..+...++|
T Consensus 9 ~CP~Pll~~~~~l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~~-~~~~~~~~~~~~i~I 68 (70)
T PF01206_consen 9 SCPMPLLKAKKALKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGYE-VVEVEEEGGEYRILI 68 (70)
T ss_dssp STTHHHHHHHHHHHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTEE-EEEEEESSSSEEEEE
T ss_pred CCCHHHHHHHHHHHhc-CCCCEEEEEECCccHHHHHHHHHHHCCCE-EEEEEEeCCEEEEEE
Confidence 3445667777788887 68777777777888899999999999994 444444333333333
No 17
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=33.14 E-value=65 Score=28.79 Aligned_cols=72 Identities=26% Similarity=0.397 Sum_probs=47.2
Q ss_pred cCCCCceEEEEEecCCC-CceEEEeC---------C------CCCeEEEEEeeeEehhh-h-hhhcCCCCCCCCCCCCCc
Q 030058 82 GPMGVTHFLMLSKTESA-PYLRVART---------P------QGPTLTFKIHEYSLAVD-V-AQSQLRPRCPQDLFKTSP 143 (183)
Q Consensus 82 ~~~g~Thllv~~~~~~~-~~L~i~~l---------P------~GPTl~F~V~n~~l~~D-I-~~~~k~~~~~g~~~~~~P 143 (183)
..-|+.|+|+|+..+.. ++|+..++ | -||.+-|.|-.-.++.| + +.+.+.|+.. .-+..-
T Consensus 173 ~l~Gl~~v~vfta~~~~~v~~r~Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~asddL~k~A~k~PK~l--~~K~kK 250 (307)
T KOG3031|consen 173 RLAGLEYVIVFTATEETNVLFRVYRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKLASDDLYKEALKKPKQL--EKKKKK 250 (307)
T ss_pred eeccccEEEEEEeecCceeeeeeeeeeeeeccCCCCceehhhcCCceeEEEEeccCCCHHHHHHHhcCchhc--cccccc
Confidence 34689999999999876 67776653 5 59999999977777665 4 3355555411 112223
Q ss_pred EEEcCCCCCCCc
Q 030058 144 LIVLSGFGTGDQ 155 (183)
Q Consensus 144 lLIlNnF~t~~~ 155 (183)
-+-.|-|++..+
T Consensus 251 Nv~~D~~g~k~G 262 (307)
T KOG3031|consen 251 NVSKDAFGNKLG 262 (307)
T ss_pred ccchhhhcCcce
Confidence 455666776654
No 18
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.91 E-value=2.1e+02 Score=21.66 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=40.6
Q ss_pred EEEEcCCCCC----ccHHHHHHHHhHhcCCCccccc-----------cc--ccCCCHHHHHHhhcCCCCceEEEEEe
Q 030058 35 SFVFSRGKLP----GPLRQLEMDLRKLMLPHTALNL-----------KE--KKRNNLKDFLNVAGPMGVTHFLMLSK 94 (183)
Q Consensus 35 ~lV~~~g~~~----~~~~~L~~DlR~vm~P~ta~~l-----------k~--r~kn~lkd~v~~a~~~g~Thllv~~~ 94 (183)
++++..|... ..+..+.++++.-+ |.....+ +. ....++.|-++-+...||+++++..-
T Consensus 3 illv~fGS~~~~~~~~~~~i~~~l~~~~-p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl 78 (127)
T cd03412 3 ILLVSFGTSYPTAEKTIDAIEDKVRAAF-PDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSL 78 (127)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHC-CCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeC
Confidence 4566666554 35678889998886 8543321 11 12467888888888899999999854
No 19
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.77 E-value=1.9e+02 Score=18.84 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=37.8
Q ss_pred CccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEe
Q 030058 44 PGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSK 94 (183)
Q Consensus 44 ~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~ 94 (183)
...+-.+.+-|+.+ .+.....+.-+......|+..+|...|+..+.+-.+
T Consensus 10 P~Pl~~~~~~l~~l-~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~~ 59 (69)
T cd00291 10 PLPVLKTKKALEKL-KSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEE 59 (69)
T ss_pred CHHHHHHHHHHhcC-CCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEe
Confidence 34677788888886 677766666666667999999999999986554443
No 20
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=24.29 E-value=2.6e+02 Score=19.64 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=37.8
Q ss_pred EEEEcCCCCCc----cHHHHHHHHhHhcCCCcccc--cccccCCCHHHHHHhhcCCCCceEEEE
Q 030058 35 SFVFSRGKLPG----PLRQLEMDLRKLMLPHTALN--LKEKKRNNLKDFLNVAGPMGVTHFLML 92 (183)
Q Consensus 35 ~lV~~~g~~~~----~~~~L~~DlR~vm~P~ta~~--lk~r~kn~lkd~v~~a~~~g~Thllv~ 92 (183)
++++..|.... .+.+|+..++... |..... +-+...-++.|.++-+...|+++++++
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~-~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERL-PGDEVELAFLELAEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhC-CCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 35666665543 5678888888774 432221 123335678999988888899998886
No 21
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.00 E-value=1.9e+02 Score=19.75 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=44.3
Q ss_pred cHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeEE
Q 030058 46 PLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLT 113 (183)
Q Consensus 46 ~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl~ 113 (183)
...++..+||.. -. ...+-.+. .+++.-...|...|+..++++.+.+-. ..+.|-.+-.|-...
T Consensus 19 ~a~~la~~Lr~~--g~-~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~ 83 (94)
T cd00861 19 LAEKLYAELQAA--GV-DVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEE 83 (94)
T ss_pred HHHHHHHHHHHC--CC-EEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceE
Confidence 457778888864 22 23333333 478888889999999999999988744 567676666665444
No 22
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.39 E-value=2.4e+02 Score=18.89 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=48.9
Q ss_pred EEEEcCCC-CCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 030058 35 SFVFSRGK-LPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP 110 (183)
Q Consensus 35 ~lV~~~g~-~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GP 110 (183)
++|+..+. .-.....++.+||.. ... ..+-.+ ..++..-...|...|+..++++...+.. ..+.+-.+-.|-
T Consensus 4 v~ii~~~~~~~~~a~~~~~~Lr~~--g~~-v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~ 77 (91)
T cd00860 4 VVVIPVTDEHLDYAKEVAKKLSDA--GIR-VEVDLR-NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGD 77 (91)
T ss_pred EEEEeeCchHHHHHHHHHHHHHHC--CCE-EEEECC-CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCc
Confidence 35554433 334667888999875 332 233333 3588999999999999999999987744 566666666554
No 23
>PF02172 KIX: KIX domain; InterPro: IPR003101 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner []. This provides a model for activator:coactivator interactions. The KIX domain of CBP also binds to transactivation domains of other nuclear factors including Myb and Jun.; GO: 0003712 transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2KWF_A 1KDX_A 2LQH_A 2LQI_A 1SB0_A 2AGH_B.
Probab=23.33 E-value=70 Score=23.11 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCCCCCCcc
Q 030058 158 KLTTIMFQNIFPAIDINTV 176 (183)
Q Consensus 158 ~lv~~mfq~lFP~i~~~~~ 176 (183)
.+|+.+.+.+||..|+...
T Consensus 17 hlV~KLv~aI~P~pdp~a~ 35 (81)
T PF02172_consen 17 HLVHKLVQAIFPTPDPNAM 35 (81)
T ss_dssp HHHHHHHHHHS-SSSCCCC
T ss_pred HHHHHHHHhhCCCCChhhh
Confidence 4999999999999888765
No 24
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=22.90 E-value=2.2e+02 Score=24.65 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=47.7
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCC----C--CceEE
Q 030058 30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTES----A--PYLRV 103 (183)
Q Consensus 30 ~~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~----~--~~L~i 103 (183)
+..|+++-++- |-.+-+|+.-.|+++ . +||-+++.. ++.+||++-++=. . -+|.+
T Consensus 109 s~hrr~v~vKK---GdtI~~FL~~~r~~l-~--------------~~f~el~~v-svd~LM~VkedlIiPHhy~FY~fI~ 169 (239)
T PF04921_consen 109 SGHRRTVRVKK---GDTIWQFLEKCRKQL-A--------------KEFRELRRV-SVDDLMYVKEDLIIPHHYTFYDFIV 169 (239)
T ss_pred CCCcceEEEcC---CCCHHHHHHHHHHHH-H--------------HHhHHHHhc-CHhheeeeccceeccCCceeeeeee
Confidence 34667555544 456889999999997 2 556777665 8889999988532 2 23333
Q ss_pred --EeCCCCCeEEEEEee
Q 030058 104 --ARTPQGPTLTFKIHE 118 (183)
Q Consensus 104 --~~lP~GPTl~F~V~n 118 (183)
++-+.||-+.|.+..
T Consensus 170 nka~GksGpLF~fd~~~ 186 (239)
T PF04921_consen 170 NKARGKSGPLFDFDVHD 186 (239)
T ss_pred ccccCCCCCeeeccCCc
Confidence 456889888888865
No 25
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.47 E-value=2.8e+02 Score=20.41 Aligned_cols=76 Identities=9% Similarity=0.105 Sum_probs=53.0
Q ss_pred CcEEEEcCC--C-CCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCC
Q 030058 33 PKSFVFSRG--K-LPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ 108 (183)
Q Consensus 33 Pk~lV~~~g--~-~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~ 108 (183)
+.++|+..+ . .-....+++..||.- .. ...+-.+ .+++.-...|...|+..++++.+.+-. ..+.+-.+-.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~--gi-~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~ 101 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELREL--GF-SVKYDDS--GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDS 101 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHC--CC-EEEEeCC--CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCC
Confidence 456777665 2 233567888899875 33 2333333 589999999999999999999988754 5777777766
Q ss_pred CCeEE
Q 030058 109 GPTLT 113 (183)
Q Consensus 109 GPTl~ 113 (183)
|-..+
T Consensus 102 ~~~~~ 106 (121)
T cd00858 102 MRQVR 106 (121)
T ss_pred CceEE
Confidence 65444
No 26
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=22.30 E-value=1e+02 Score=26.85 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=28.5
Q ss_pred HHHHHHHHhHhcCCCccccccc----ccCCCHHHHH-HhhcCCC
Q 030058 47 LRQLEMDLRKLMLPHTALNLKE----KKRNNLKDFL-NVAGPMG 85 (183)
Q Consensus 47 ~~~L~~DlR~vm~P~ta~~lk~----r~kn~lkd~v-~~a~~~g 85 (183)
..+||..||.++||.-|++|+- .|+-++|.++ .+|..+.
T Consensus 2 ~~~l~eqlrlilept~~~~~~gdy~tgkrln~kkii~yias~~~ 45 (266)
T cd01460 2 SSELCEQLRLILEPTLATKLKGDYRTGKRLNMKKIIPYIASQFR 45 (266)
T ss_pred hHHHHHHHHHHhCchhhhhccCCCCcccccchhhhhhhhhcccc
Confidence 3689999999999998887653 3566677664 5666443
No 27
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=20.91 E-value=71 Score=23.01 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=34.0
Q ss_pred cHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEE
Q 030058 46 PLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91 (183)
Q Consensus 46 ~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv 91 (183)
...+++--+|-+| |++..++--+....++|+..+|-.-|++.+++
T Consensus 23 e~lr~ia~~Rl~~-P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~ 67 (93)
T PF06968_consen 23 EFLRIIAAFRLLL-PEAGIRLAGGREALLRDLQPLTFMSGANSIMV 67 (93)
T ss_dssp HHHHHHHHHHHHS-TTSEEEEECCHHHCSCCHHHHHHCCT--EEE-
T ss_pred HHHHHHHHHHHHC-CCcceEeecCccccCHHHHHHHHhcccceeEE
Confidence 5678888999997 99877777667667888888888888887764
No 28
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=20.86 E-value=62 Score=23.75 Aligned_cols=16 Identities=6% Similarity=-0.236 Sum_probs=10.7
Q ss_pred CcchhhhhhhccCCCC
Q 030058 9 KKGFVKSFVKKKQPTV 24 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (183)
||+|+.||..+..++.
T Consensus 1 MPkSk~rKk~~~~~~~ 16 (87)
T PF06781_consen 1 MPKSKVRKKAAYTPPP 16 (87)
T ss_pred CCCccccccccCCCCC
Confidence 7888888776554433
No 29
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.50 E-value=2.5e+02 Score=18.28 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=48.8
Q ss_pred cEEEEcCCCC-CccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCe
Q 030058 34 KSFVFSRGKL-PGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPT 111 (183)
Q Consensus 34 k~lV~~~g~~-~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPT 111 (183)
.++|+..+.. -....+++.+||.-= . ...+-... .++++....|...|+..++++.+.+.. ..+.+..+..|-.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g--~-~v~~~~~~-~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~ 78 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAG--I-KAEIDYGG-RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ 78 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCC--C-EEEEecCC-CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCc
Confidence 4666665542 235678889999751 1 12222222 358888999999999999999865432 4666666666654
Q ss_pred EE
Q 030058 112 LT 113 (183)
Q Consensus 112 l~ 113 (183)
..
T Consensus 79 ~~ 80 (91)
T cd00859 79 ET 80 (91)
T ss_pred EE
Confidence 33
No 30
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.00 E-value=3.9e+02 Score=24.99 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCCCcEEEEcCCCCC-ccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCC
Q 030058 30 DKIPKSFVFSRGKLP-GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTP 107 (183)
Q Consensus 30 ~~~Pk~lV~~~g~~~-~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP 107 (183)
...+.++|+.-+.-. .....+++.||.- .+.+-..+..++ ++.-...|...|+..++++-+++-. -.+.|-.+-
T Consensus 333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~-g~~~~~~~~~r~---~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~ 408 (429)
T COG0124 333 ETRVDVYVVPLGEDAEPEALKLAQKLRAA-GISVEVDYSGRK---LKKQFKYADKLGARFAVILGEDELANGVVTVKDLA 408 (429)
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHHHc-CCcEEEEecccc---HHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCC
Confidence 446889999998875 7889999999998 577666555433 8999999999999999999998854 566666666
Q ss_pred CC
Q 030058 108 QG 109 (183)
Q Consensus 108 ~G 109 (183)
.|
T Consensus 409 t~ 410 (429)
T COG0124 409 TG 410 (429)
T ss_pred CC
Confidence 66
Done!