Query 030058
Match_columns 183
No_of_seqs 126 out of 471
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.9 5.7E-28 2E-32 201.7 11.2 130 31-173 32-167 (217)
2 1w94_A MIL, probable BRIX-doma 99.4 2.4E-13 8.3E-18 108.0 8.5 84 34-126 1-85 (156)
3 1otr_A Protein CUE2; protein-p 64.5 1.2 4E-05 28.4 -0.4 16 162-177 9-24 (49)
4 1p3q_Q VPS9P, vacuolar protein 52.0 2.6 8.8E-05 27.5 -0.3 18 159-176 14-31 (54)
5 2dhy_A CUE domain-containing p 47.4 3.4 0.00011 27.9 -0.4 19 159-177 20-38 (67)
6 1wgl_A TOLL-interacting protei 44.4 4 0.00014 26.7 -0.4 17 161-177 13-29 (59)
7 4g3o_A E3 ubiquitin-protein li 34.6 11 0.00038 24.8 0.6 21 156-176 16-36 (58)
8 2ekf_A Ancient ubiquitous prot 28.4 21 0.0007 23.7 1.1 21 156-176 12-32 (61)
9 2ejs_A Autocrine motility fact 28.3 16 0.00056 23.9 0.6 21 156-176 12-32 (58)
10 1kdx_A CBP; complex (transcrip 21.5 44 0.0015 23.2 1.8 19 158-176 17-35 (81)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.95 E-value=5.7e-28 Score=201.69 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=117.5
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCC
Q 030058 31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG 109 (183)
Q Consensus 31 ~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~G 109 (183)
..||++||||++++.++++|++||+.+| ||+ ..+ .|++++|+|+++.|..+|||++++|+++++. .+|||+|+|.|
T Consensus 32 ~~pKvLITTSr~pS~r~r~fakeL~~~l-Pns-~~i-~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G 108 (217)
T 2cxh_A 32 GGYRILVTTSRRPSPRIRSFVKDLSATI-PGA-FRF-TRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP 108 (217)
T ss_dssp -CCEEEEEESSSCCHHHHHHHHHHHTTS-TTE-EEC-CCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHHHC-CCC-EEe-ecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence 4899999999999999999999999998 986 344 4889999999999999999999999999987 89999999999
Q ss_pred ---C-eEEEEEeeeEehhhhhhhcCCCCCCCCCC-CCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCC
Q 030058 110 ---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI 173 (183)
Q Consensus 110 ---P-Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~-~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~ 173 (183)
| |++|+|+|+.+++||..+ |+++ .++|+|+ |||.+++ +.++++||++|||....
T Consensus 109 ~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~~--g~~i~~~f~~lFp~P~~ 167 (217)
T 2cxh_A 109 ERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSGV--AVEFADAFVIAFHARLK 167 (217)
T ss_dssp SCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSST--HHHHHHHHHHHHCCBSS
T ss_pred CCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCch--HHHHHHHHHHHcCCCCC
Confidence 9 999999999999999865 5555 4899999 9999884 78999999999998443
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=99.44 E-value=2.4e-13 Score=107.98 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=75.4
Q ss_pred cEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeE
Q 030058 34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL 112 (183)
Q Consensus 34 k~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl 112 (183)
|.+|||+++++.++.+|+++|..++ + +. +-.|++.+|+++++.|... +++++++++. .+|.|+|+|.|||+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l--n-~~-~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~ 72 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM--G-WR-YINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG 72 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH--T-CE-ECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--C-CE-EEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence 5799999999999999999999997 5 33 3458899999999988554 9999999988 79999999999999
Q ss_pred EEEEeeeEehhhhh
Q 030058 113 TFKIHEYSLAVDVA 126 (183)
Q Consensus 113 ~F~V~n~~l~~DI~ 126 (183)
+|++ |+.+.+|+.
T Consensus 73 ~f~~-nv~l~~~~~ 85 (156)
T 1w94_A 73 YILF-NPSFEMKKP 85 (156)
T ss_dssp EEEE-EEEECSSCC
T ss_pred EEEE-ceEEcccCc
Confidence 9999 999999986
No 3
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=64.51 E-value=1.2 Score=28.45 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=13.2
Q ss_pred HHHHhcCCCCCCCccc
Q 030058 162 IMFQNIFPAIDINTVS 177 (183)
Q Consensus 162 ~mfq~lFP~i~~~~~~ 177 (183)
..|+.|||.++..+++
T Consensus 9 ~~L~EMFP~~~~~~ik 24 (49)
T 1otr_A 9 SILMDMFPAISKSKLQ 24 (49)
T ss_dssp HHHHHHCSSSCHHHHH
T ss_pred HHHHHHCCCCCHHHHH
Confidence 5789999999987764
No 4
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=52.00 E-value=2.6 Score=27.46 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCCCCCCcc
Q 030058 159 LTTIMFQNIFPAIDINTV 176 (183)
Q Consensus 159 lv~~mfq~lFP~i~~~~~ 176 (183)
-.-..|++|||.++.+.+
T Consensus 14 ~~~~~L~~MFP~lD~evI 31 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLI 31 (54)
T ss_dssp HHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHcccCCHHHH
Confidence 345679999999987654
No 5
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.45 E-value=3.4 Score=27.90 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCCCCCccc
Q 030058 159 LTTIMFQNIFPAIDINTVS 177 (183)
Q Consensus 159 lv~~mfq~lFP~i~~~~~~ 177 (183)
-....|+.|||.++.+.|+
T Consensus 20 ~~v~~L~~MFP~lD~~vI~ 38 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIE 38 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHH
Confidence 3445699999999987653
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=44.37 E-value=4 Score=26.73 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.3
Q ss_pred HHHHHhcCCCCCCCccc
Q 030058 161 TIMFQNIFPAIDINTVS 177 (183)
Q Consensus 161 ~~mfq~lFP~i~~~~~~ 177 (183)
-..|+.|||.++.+.++
T Consensus 13 l~~L~emFP~ld~~~I~ 29 (59)
T 1wgl_A 13 LKAIQDMFPNMDQEVIR 29 (59)
T ss_dssp HHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHCCCCCHHHHH
Confidence 35689999999987654
No 7
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=34.58 E-value=11 Score=24.77 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhcCCCCCCCcc
Q 030058 156 HLKLTTIMFQNIFPAIDINTV 176 (183)
Q Consensus 156 h~~lv~~mfq~lFP~i~~~~~ 176 (183)
.+.-+....++|||++..+.+
T Consensus 16 ql~~Mve~V~~mFPqv~~~~I 36 (58)
T 4g3o_A 16 QLNAMAHQIQEMFPQVPYHLV 36 (58)
T ss_dssp HHHHHHHHHHHHCTTSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHH
Confidence 356788899999999987654
No 8
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.43 E-value=21 Score=23.66 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=17.1
Q ss_pred hhHHHHHHHHhcCCCCCCCcc
Q 030058 156 HLKLTTIMFQNIFPAIDINTV 176 (183)
Q Consensus 156 h~~lv~~mfq~lFP~i~~~~~ 176 (183)
.+..+....++|||++....+
T Consensus 12 ql~~mv~~V~~mfP~vp~~~I 32 (61)
T 2ekf_A 12 QLATLAQRVKEVLPHVPLGVI 32 (61)
T ss_dssp CHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHH
Confidence 467889999999999976554
No 9
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.27 E-value=16 Score=23.89 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhcCCCCCCCcc
Q 030058 156 HLKLTTIMFQNIFPAIDINTV 176 (183)
Q Consensus 156 h~~lv~~mfq~lFP~i~~~~~ 176 (183)
.+..+....++|||++..+.+
T Consensus 12 q~~~mv~~V~~mfP~vp~~~I 32 (58)
T 2ejs_A 12 QLNAMAHQIQEMFPQVPYHLV 32 (58)
T ss_dssp HHHHHHHHHHHHCCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHH
Confidence 467888999999999986654
No 10
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=21.45 E-value=44 Score=23.20 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCCCCCcc
Q 030058 158 KLTTIMFQNIFPAIDINTV 176 (183)
Q Consensus 158 ~lv~~mfq~lFP~i~~~~~ 176 (183)
.+|..+.+.+||.+++...
T Consensus 17 hlv~Klv~aI~P~pdp~a~ 35 (81)
T 1kdx_A 17 HLVHKLVQAIFPTPDPAAL 35 (81)
T ss_dssp HHHHHHHHHHSCCSSGGGG
T ss_pred HHHHHHHHHhcCCCChhhh
Confidence 4999999999999998753
Done!