Query 030060
Match_columns 183
No_of_seqs 51 out of 53
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9z_A WHY2 protein; stwhy2, s 100.0 3.7E-61 1.3E-65 397.0 13.9 130 50-179 2-133 (178)
2 1l3a_A PBF-2, P24: plant trans 100.0 6.2E-57 2.1E-61 382.9 16.5 129 51-179 30-160 (227)
3 1aoc_A Coagulogen; coagulation 90.2 0.19 6.4E-06 40.9 3.2 52 60-118 78-129 (175)
4 1vq8_1 50S ribosomal protein L 34.0 13 0.00045 25.6 0.9 14 103-116 42-55 (57)
5 3j21_e 50S ribosomal protein L 25.4 21 0.00073 24.9 0.8 14 103-116 42-55 (62)
6 3iz5_l 60S ribosomal protein L 19.1 33 0.0011 25.7 0.8 14 103-116 40-53 (94)
7 3bu2_A Putative tRNA-binding p 17.1 1.8E+02 0.0063 23.7 4.9 57 111-172 55-115 (199)
8 3pw3_A Aminopeptidase C; bleom 16.3 1.2E+02 0.0041 27.1 3.8 56 107-171 168-226 (383)
9 2zkr_2 60S ribosomal protein L 15.7 49 0.0017 24.8 1.0 14 103-116 40-53 (97)
10 2cwp_A Metrs related protein; 11.3 2.1E+02 0.0071 21.0 3.4 21 152-172 18-39 (112)
No 1
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=3.7e-61 Score=397.00 Aligned_cols=130 Identities=65% Similarity=1.068 Sum_probs=115.2
Q ss_pred cCCCCCCCeeeeceeeeecceeEEeeccCCceeecCCCCeEEeeeeeEEEEeecccCCcccccccceEEEeChhhHhhhh
Q 030060 50 SAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLL 129 (183)
Q Consensus 50 s~~~~~~~Rvy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPa~G~RqYDW~kKq~FaLS~tEvG~Ll 129 (183)
+++|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+||||||||+|+|||||+|||+|+||++|+|+||
T Consensus 2 ~~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Ll 81 (178)
T 3r9z_A 2 ADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI 81 (178)
T ss_dssp -----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHH
T ss_pred CCCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceeeeeCCCCCCCCCCceeeeEEeEeCCCC--ceEEEEEeeccccc
Q 030060 130 TMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLICIASSHGL 179 (183)
Q Consensus 130 sl~~~~s~effHDP~~g~S~~G~vrK~LkveP~~dG--~f~~LsV~n~~~~~ 179 (183)
++++++||||||||+|++|++|+|+|+|||||+||| +||||+|+|++.|.
T Consensus 82 sl~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~ 133 (178)
T 3r9z_A 82 SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKT 133 (178)
T ss_dssp TCCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTE
T ss_pred HhcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccc
Confidence 999999999999999999999999999999999998 99999999998763
No 2
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=6.2e-57 Score=382.86 Aligned_cols=129 Identities=45% Similarity=0.832 Sum_probs=121.9
Q ss_pred CCCCCCCeeeeceeeeecceeEEeeccCCceeecCCCCeEEeeeeeEEEEeecccCCcccccccceEEEeChhhHhhhhh
Q 030060 51 AKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLT 130 (183)
Q Consensus 51 ~~~~~~~Rvy~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPa~G~RqYDW~kKq~FaLS~tEvG~Lls 130 (183)
.++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||+
T Consensus 30 ~a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEFAPa~g~RqYDW~kKq~FsLS~tEvG~LLs 109 (227)
T 1l3a_A 30 PQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIIS 109 (227)
T ss_dssp -----CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEEEEBCSTTCBCGGGCEEEEECHHHHHHHHT
T ss_pred CCCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEEeeccCccccccccceEEEeCHHHHhHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeeeCCCCCCCCCCceeeeEEeEeCCCC--ceEEEEEeeccccc
Q 030060 131 MGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLICIASSHGL 179 (183)
Q Consensus 131 l~~~~s~effHDP~~g~S~~G~vrK~LkveP~~dG--~f~~LsV~n~~~~~ 179 (183)
|+++++|||||||+||+|++|+|+|+|+|||+||| +||||+|+|+++|.
T Consensus 110 l~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~ 160 (227)
T 1l3a_A 110 LGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINL 160 (227)
T ss_dssp CCTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTE
T ss_pred cccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCC
Confidence 99999999999999999999999999999999997 99999999998763
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=90.22 E-value=0.19 Score=40.88 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=46.4
Q ss_pred eeceeeeecceeEEeeccCCceeecCCCCeEEeeeeeEEEEeecccCCcccccccceEE
Q 030060 60 FAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHF 118 (183)
Q Consensus 60 y~~ysIYKgKAAlsv~p~~P~F~~l~SG~~kv~R~G~vlLeFAPa~G~RqYDW~kKq~F 118 (183)
|+||.-|+..+-.+.+..-|.|.-.-+|.+. |++| ||.+|-||--|+.|-.|
T Consensus 78 f~pf~hf~secpvstrdcepvfgyt~a~efr------vivq-apragfrqcvwqhkcry 129 (175)
T 1aoc_A 78 FPPFTHFKSECPVSTRDCEPVFGYTVAGEFR------VIVQ-APRAGFRQCVWQHKCRF 129 (175)
T ss_dssp STTCCCCSSBCCEEEECCCCSEEEBTTCCEE------EECC-BTTTTBCBCCCEEEETT
T ss_pred CCCcccccccCCcccccccccccceecceEE------EEEe-CchhhhHHHHHhhhccc
Confidence 5999999999999999999999998888765 5666 99999999999998654
No 4
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=33.99 E-value=13 Score=25.60 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.9
Q ss_pred cccCCcccccccce
Q 030060 103 PAIGERKYDWAKKQ 116 (183)
Q Consensus 103 Pa~G~RqYDW~kKq 116 (183)
|+.--|+|+|+.|-
T Consensus 42 pa~r~R~ynWs~Ka 55 (57)
T 1vq8_1 42 KSAKRRDYEWQSKA 55 (57)
T ss_dssp TCSSCCCCGGGSCT
T ss_pred chhhhcCcchhhhh
Confidence 78888999999873
No 5
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.43 E-value=21 Score=24.95 Aligned_cols=14 Identities=43% Similarity=0.677 Sum_probs=11.3
Q ss_pred cccCCcccccccce
Q 030060 103 PAIGERKYDWAKKQ 116 (183)
Q Consensus 103 Pa~G~RqYDW~kKq 116 (183)
|+.--|+|+|+.|-
T Consensus 42 ps~r~R~YnWs~Ka 55 (62)
T 3j21_e 42 RSRRLRKYRWSKKW 55 (62)
T ss_dssp TCSSCCCCTTCSHH
T ss_pred hhhhhccccHHHHh
Confidence 66777999999873
No 6
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=19.10 E-value=33 Score=25.71 Aligned_cols=14 Identities=50% Similarity=0.952 Sum_probs=11.9
Q ss_pred cccCCcccccccce
Q 030060 103 PAIGERKYDWAKKQ 116 (183)
Q Consensus 103 Pa~G~RqYDW~kKq 116 (183)
|+.--|+|+|+.|-
T Consensus 40 ps~r~R~YnWs~Ka 53 (94)
T 3iz5_l 40 PAARIRKYNWSVKA 53 (94)
T ss_dssp SCSSCCCCSSSCHH
T ss_pred chhhcccccHHHhh
Confidence 77778999999874
No 7
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=17.05 E-value=1.8e+02 Score=23.71 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=31.1
Q ss_pred ccccceEEEeC---hhhHhhhhhccCCCceeeeeCCCCCCCCCCceeeeEEeEeCCCC-ceEEEEE
Q 030060 111 DWAKKQHFALS---PTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG-FFISLIC 172 (183)
Q Consensus 111 DW~kKq~FaLS---~tEvG~Llsl~~~~s~effHDP~~g~S~~G~vrK~LkveP~~dG-~f~~LsV 172 (183)
+-+.+....|| +.|+...|.+.--+ .| .+++ . ...=.|.|+++++|+||. ...-+.|
T Consensus 55 ~~~~~g~v~l~~~~~~~l~~~Lt~~G~E-ve-v~~~--~-~~~vvVG~V~~~e~hP~ADkL~v~~V 115 (199)
T 3bu2_A 55 TLTGNGHIKLTETLVQAFQKAIEAAGFT-YK-LDAD--F-TPKFVVGYVETKDKHPDADKLSVLSV 115 (199)
T ss_dssp CCC---CCCCCHHHHHHHHHHHHHTTCC-CC-CCCC--C-CCSEEEEEEEEEEECTTTSSCEEEEE
T ss_pred eeccCCceeCCHHHHHHHHHHHHhCCCe-EE-EEEc--C-CCCeEEEEEEEEEECCCCCEEEEEEE
Confidence 44444455688 44555555433332 45 4444 1 233457899999999997 4444444
No 8
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=16.26 E-value=1.2e+02 Score=27.06 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=41.2
Q ss_pred CcccccccceEEEeChhhHhhhhhccCCCceeeeeCCCCCCCCCCceeeeEEeEeCCC---CceEEEE
Q 030060 107 ERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANAD---GFFISLI 171 (183)
Q Consensus 107 ~RqYDW~kKq~FaLS~tEvG~Llsl~~~~s~effHDP~~g~S~~G~vrK~LkveP~~d---G~f~~Ls 171 (183)
+.+++|+.| .++|.|...=+-+.+.+=+.+.|||.. .-.|.+.|+-..+ |.++|+.
T Consensus 168 P~~F~~~gk---~~TP~~F~~~v~~~~~dyV~l~n~p~~------py~~~y~ve~~~N~~~g~~~Nvp 226 (383)
T 3pw3_A 168 PEKFTYKGK---EYTPKSFFESTGLKASDYVSLTSYTHH------PFYTQFPLEIQDNWRHGMSYNLP 226 (383)
T ss_dssp CSSEEETTE---EECHHHHHHHHTCCGGGEEEEECCSSS------CTTCEEECCCTTCTTCCEEEECC
T ss_pred CceEEecCC---CcCHHHHHHHhCCCccceEEEeeCCCC------ccCceEEEecCCCccCCccCCcC
Confidence 789999988 569999886665667889999999963 3456777776443 5766653
No 9
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=15.67 E-value=49 Score=24.84 Aligned_cols=14 Identities=50% Similarity=1.044 Sum_probs=11.8
Q ss_pred cccCCcccccccce
Q 030060 103 PAIGERKYDWAKKQ 116 (183)
Q Consensus 103 Pa~G~RqYDW~kKq 116 (183)
|+.--|+|+|+.|-
T Consensus 40 pa~k~R~ynWs~Ka 53 (97)
T 2zkr_2 40 PAKRKRKYNWSAKA 53 (97)
T ss_dssp TTSSCCCCSSSSCC
T ss_pred chHhccCcchhhhh
Confidence 66778999999984
No 10
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=11.26 E-value=2.1e+02 Score=20.99 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=16.0
Q ss_pred ceeeeEEeEeCCCC-ceEEEEE
Q 030060 152 QMRKSLSIKANADG-FFISLIC 172 (183)
Q Consensus 152 ~vrK~LkveP~~dG-~f~~LsV 172 (183)
.|.|++++||+|+. ..+-+.|
T Consensus 18 rVG~I~~~e~hp~adkL~~~~V 39 (112)
T 2cwp_A 18 KVGLVKKAEKIKRTKKLIKLIV 39 (112)
T ss_dssp EEEEEEEEEECTTCSSCEEEEE
T ss_pred EEEEEEEEEECCCCCccEEEEE
Confidence 46799999999997 5555554
Done!