Query 030061
Match_columns 183
No_of_seqs 107 out of 1083
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1691 emp24/gp25L/p24 family 100.0 9.4E-35 2E-39 224.1 18.4 153 29-182 17-170 (210)
2 KOG1692 Putative cargo transpo 100.0 9.7E-34 2.1E-38 214.9 13.7 144 32-182 18-161 (201)
3 KOG1690 emp24/gp25L/p24 family 100.0 4.6E-32 1E-36 206.6 16.7 151 29-182 15-175 (215)
4 KOG1693 emp24/gp25L/p24 family 100.0 3.7E-30 8E-35 196.4 16.6 147 30-182 19-167 (209)
5 KOG3287 Membrane trafficking p 99.9 1.3E-26 2.9E-31 178.9 17.0 145 32-181 33-188 (236)
6 PF01105 EMP24_GP25L: emp24/gp 99.9 1.8E-28 4E-33 187.9 0.0 144 34-182 1-148 (183)
7 PF13473 Cupredoxin_1: Cupredo 94.7 0.14 3E-06 35.6 6.2 22 95-116 75-97 (104)
8 PRK02710 plastocyanin; Provisi 93.5 1.9 4.2E-05 30.8 10.3 94 10-112 6-105 (119)
9 PF13897 GOLD_2: Golgi-dynamic 92.2 2.5 5.5E-05 31.1 9.3 30 99-130 104-133 (136)
10 PF04151 PPC: Bacterial pre-pe 91.9 1.3 2.8E-05 28.3 6.9 61 45-112 3-68 (70)
11 PF01835 A2M_N: MG2 domain; I 91.7 2.9 6.4E-05 28.4 9.9 62 53-115 13-86 (99)
12 smart00557 IG_FLMN Filamin-typ 91.1 3.4 7.4E-05 28.0 9.3 53 74-126 33-88 (93)
13 PF13860 FlgD_ig: FlgD Ig-like 91.1 1.5 3.3E-05 29.0 6.8 43 54-101 11-55 (81)
14 PF11589 DUF3244: Domain of un 88.0 2.1 4.6E-05 29.9 5.9 57 53-116 35-95 (106)
15 PRK06655 flgD flagellar basal 85.8 4.4 9.5E-05 32.5 7.2 57 54-115 112-179 (225)
16 PRK05842 flgD flagellar basal 85.5 4.6 9.9E-05 33.7 7.4 60 55-115 149-221 (295)
17 PF15417 DUF4624: Domain of un 84.2 11 0.00024 26.9 7.7 66 42-116 37-110 (132)
18 PF09315 DUF1973: Domain of un 83.8 16 0.00034 28.2 9.3 66 44-117 18-89 (179)
19 PF05738 Cna_B: Cna protein B- 83.7 2.8 6E-05 26.5 4.4 43 74-116 3-47 (70)
20 PRK12812 flgD flagellar basal 83.5 5.1 0.00011 32.8 6.8 56 55-115 128-194 (259)
21 PRK12813 flgD flagellar basal 83.1 6.1 0.00013 31.7 6.9 56 54-115 110-174 (223)
22 PF13620 CarboxypepD_reg: Carb 81.1 4.6 9.9E-05 26.1 4.8 43 74-116 16-58 (82)
23 PF00630 Filamin: Filamin/ABP2 78.5 9 0.0002 25.8 5.8 43 74-116 43-92 (101)
24 PF10572 UPF0556: Uncharacteri 75.2 33 0.00072 25.9 8.3 35 29-64 20-55 (158)
25 PRK14081 triple tyrosine motif 75.1 57 0.0012 30.5 11.3 73 54-131 401-476 (667)
26 PF07495 Y_Y_Y: Y_Y_Y domain; 74.9 17 0.00037 22.4 6.9 55 74-130 9-65 (66)
27 PRK12633 flgD flagellar basal 72.1 17 0.00036 29.2 6.6 55 56-115 117-182 (230)
28 TIGR03096 nitroso_cyanin nitro 71.5 38 0.00083 25.0 8.5 82 33-115 25-122 (135)
29 PF14524 Wzt_C: Wzt C-terminal 70.7 18 0.00038 25.6 6.0 70 43-116 25-94 (142)
30 PF10528 PA14_2: GLEYA domain; 70.3 12 0.00026 26.6 4.8 48 40-90 55-102 (113)
31 PRK09619 flgD flagellar basal 69.0 23 0.0005 28.2 6.7 55 55-115 110-172 (218)
32 PRK12634 flgD flagellar basal 68.7 16 0.00035 29.2 5.7 42 74-115 123-175 (221)
33 COG2332 CcmE Cytochrome c-type 68.0 48 0.001 24.9 7.6 73 11-86 10-85 (153)
34 PRK13159 cytochrome c-type bio 66.5 28 0.0006 26.3 6.2 61 23-86 22-85 (155)
35 PF12690 BsuPI: Intracellular 65.0 38 0.00083 22.5 6.4 20 71-91 23-42 (82)
36 PF15069 FAM163: FAM163 family 63.3 5.9 0.00013 29.4 2.1 18 12-29 11-28 (143)
37 PRK13150 cytochrome c-type bio 61.3 44 0.00096 25.4 6.5 64 20-86 19-91 (159)
38 PF07172 GRP: Glycine rich pro 61.0 3.9 8.4E-05 28.3 0.7 14 16-29 7-20 (95)
39 KOG0518 Actin-binding cytoskel 59.3 62 0.0013 31.7 8.4 45 74-118 884-931 (1113)
40 PHA02932 hypothetical protein; 56.7 95 0.0021 24.4 7.7 83 15-106 5-112 (221)
41 KOG3285 Spindle assembly check 55.9 25 0.00053 27.3 4.4 55 106-162 81-135 (203)
42 PRK13165 cytochrome c-type bio 55.0 57 0.0012 24.8 6.2 62 24-86 23-91 (160)
43 PF12904 Collagen_bind_2: Puta 54.2 26 0.00056 24.1 3.9 54 46-105 26-80 (93)
44 PF12988 DUF3872: Domain of un 52.9 91 0.002 23.0 10.3 79 49-130 42-133 (137)
45 PF05377 FlaC_arch: Flagella a 51.9 41 0.0009 20.8 4.2 23 150-172 4-26 (55)
46 PF03100 CcmE: CcmE; InterPro 51.5 17 0.00037 26.4 2.9 53 30-85 28-83 (131)
47 PF02419 PsbL: PsbL protein; 51.4 15 0.00032 20.7 1.9 22 6-27 10-31 (37)
48 PF07210 DUF1416: Protein of u 50.7 76 0.0016 21.5 6.9 59 52-115 5-63 (85)
49 PRK10299 PhoPQ regulatory prot 50.3 12 0.00027 22.2 1.6 21 10-30 5-25 (47)
50 PRK13254 cytochrome c-type bio 49.5 57 0.0012 24.4 5.4 65 17-84 16-82 (148)
51 PRK14749 hypothetical protein; 48.8 18 0.0004 19.4 1.9 16 13-28 6-21 (30)
52 PF05753 TRAP_beta: Translocon 48.7 1.2E+02 0.0027 23.3 9.6 32 47-81 30-61 (181)
53 COG2869 NqrC Na+-transporting 48.3 4.4 9.4E-05 32.7 -0.8 28 12-43 12-39 (264)
54 PRK00753 psbL photosystem II r 48.1 21 0.00045 20.3 2.2 22 6-27 12-33 (39)
55 PF09394 Inhibitor_I42: Chagas 46.1 83 0.0018 20.7 5.5 36 96-131 55-91 (92)
56 PF13715 DUF4480: Domain of un 46.0 81 0.0018 20.4 8.0 48 74-130 17-64 (88)
57 PRK14081 triple tyrosine motif 45.3 1.2E+02 0.0026 28.4 7.9 79 34-114 180-264 (667)
58 PF14155 DUF4307: Domain of un 45.0 73 0.0016 22.5 5.2 45 45-91 37-81 (112)
59 PRK10378 inactive ferrous ion 44.6 2.1E+02 0.0046 24.8 13.3 68 33-111 30-103 (375)
60 PF05326 SVA: Seminal vesicle 44.5 94 0.002 22.6 5.7 94 8-134 5-104 (124)
61 TIGR01432 QOXA cytochrome aa3 43.4 1.6E+02 0.0035 23.2 9.0 38 74-113 139-188 (217)
62 PF04728 LPP: Lipoprotein leuc 43.2 53 0.0011 20.4 3.7 26 148-173 5-30 (56)
63 PF10794 DUF2606: Protein of u 43.0 1.2E+02 0.0025 22.1 5.8 23 94-116 86-108 (131)
64 TIGR01433 CyoA cytochrome o ub 42.4 1.8E+02 0.0038 23.3 8.3 38 74-113 148-197 (226)
65 CHL00038 psbL photosystem II p 41.7 32 0.00069 19.4 2.3 22 6-27 11-32 (38)
66 PF13179 DUF4006: Family of un 41.0 27 0.00058 22.5 2.2 16 12-27 16-31 (66)
67 PF10670 DUF4198: Domain of un 40.9 1.3E+02 0.0028 22.9 6.6 20 94-113 191-210 (215)
68 PF06716 DUF1201: Protein of u 40.7 29 0.00064 20.7 2.1 18 8-25 5-22 (54)
69 PRK13211 N-acetylglucosamine-b 39.9 2.8E+02 0.0061 24.9 9.9 72 55-130 327-404 (478)
70 PRK10301 hypothetical protein; 39.8 1.4E+02 0.0031 21.4 9.1 59 54-117 45-110 (124)
71 PF07438 DUF1514: Protein of u 39.3 27 0.00059 22.3 2.0 14 11-24 6-19 (66)
72 PF01166 TSC22: TSC-22/dip/bun 38.4 1E+02 0.0022 19.4 4.7 33 143-175 11-43 (59)
73 PF11057 Cortexin: Cortexin of 37.8 18 0.00038 23.9 1.0 24 5-28 22-45 (81)
74 COG3117 Uncharacterized protei 37.7 90 0.0019 24.4 5.0 23 9-31 5-27 (188)
75 PF08842 Mfa2: Fimbrillin-A as 35.6 50 0.0011 26.3 3.6 43 74-116 30-78 (283)
76 PLN00115 pollen allergen group 35.1 61 0.0013 23.3 3.5 30 11-43 5-34 (118)
77 cd05860 Ig4_SCFR Fourth immuno 35.0 70 0.0015 22.3 3.7 25 103-132 75-99 (101)
78 PF07523 Big_3: Bacterial Ig-l 35.0 84 0.0018 19.6 3.9 41 74-116 18-58 (67)
79 PF08896 DUF1842: Domain of un 34.6 1.7E+02 0.0037 20.9 7.6 59 56-115 3-65 (114)
80 PF12958 DUF3847: Protein of u 33.1 87 0.0019 21.2 3.8 33 148-180 10-45 (86)
81 TIGR02106 cyd_oper_ybgT cyd op 32.8 46 0.00099 18.0 1.9 13 14-26 7-19 (30)
82 PF13314 DUF4083: Domain of un 32.6 40 0.00087 21.1 1.9 23 141-163 34-56 (58)
83 PF05506 DUF756: Domain of unk 32.0 1.5E+02 0.0033 19.5 6.2 19 45-63 47-65 (89)
84 PF09116 gp45-slide_C: gp45 sl 32.0 90 0.002 22.3 3.9 42 75-116 24-73 (112)
85 PF11598 COMP: Cartilage oligo 31.7 51 0.0011 19.5 2.2 26 148-173 10-35 (45)
86 PF11770 GAPT: GRB2-binding ad 31.5 25 0.00053 26.5 1.0 30 10-41 14-45 (158)
87 PF02083 Urotensin_II: Urotens 30.5 18 0.00039 15.3 0.1 8 42-49 2-9 (12)
88 PF02927 CelD_N: N-terminal ig 30.4 1.6E+02 0.0034 19.7 4.9 41 74-114 35-86 (91)
89 COG5436 Predicted integral mem 30.0 88 0.0019 23.8 3.7 44 60-103 72-121 (182)
90 PF08234 Spindle_Spc25: Chromo 29.2 1.6E+02 0.0035 18.9 5.8 37 102-142 3-39 (74)
91 PF07202 Tcp10_C: T-complex pr 29.1 33 0.00071 26.6 1.4 15 74-88 162-176 (179)
92 COG5510 Predicted small secret 29.0 68 0.0015 18.9 2.4 17 8-24 2-18 (44)
93 COG4549 Uncharacterized protei 28.9 2.7E+02 0.0058 21.4 11.3 86 20-117 8-93 (178)
94 PF04234 CopC: CopC domain; I 28.7 1.1E+02 0.0024 20.6 3.9 57 74-130 34-96 (97)
95 TIGR03503 conserved hypothetic 28.5 4E+02 0.0086 23.2 9.1 55 74-130 243-300 (374)
96 PF07680 DoxA: TQO small subun 28.3 2.4E+02 0.0053 20.7 6.6 42 74-116 48-98 (133)
97 PF11857 DUF3377: Domain of un 28.2 33 0.00071 22.6 1.1 14 12-25 34-47 (74)
98 PF10805 DUF2730: Protein of u 27.8 41 0.00088 23.5 1.6 30 143-172 32-61 (106)
99 PF08173 YbgT_YccB: Membrane b 27.8 63 0.0014 17.1 1.9 14 13-26 6-19 (28)
100 PF11131 PhrC_PhrF: Rap-phr ex 27.6 42 0.00092 18.9 1.3 8 17-24 5-12 (37)
101 TIGR02866 CoxB cytochrome c ox 27.5 2.5E+02 0.0055 21.7 6.2 19 95-113 156-175 (201)
102 PF11853 DUF3373: Protein of u 27.4 53 0.0012 29.5 2.5 28 147-175 26-53 (489)
103 PF06156 DUF972: Protein of un 27.3 90 0.0019 22.0 3.3 21 147-167 16-36 (107)
104 PF05366 Sarcolipin: Sarcolipi 27.0 85 0.0018 16.6 2.3 18 7-24 9-26 (31)
105 COG4062 MtrB Tetrahydromethano 26.9 54 0.0012 22.9 2.0 24 146-169 31-54 (108)
106 PRK13838 conjugal transfer pil 26.7 1.4E+02 0.003 22.8 4.5 28 33-60 27-60 (176)
107 KOG1692 Putative cargo transpo 26.5 1.6E+02 0.0034 23.2 4.7 88 7-100 3-92 (201)
108 PF12071 DUF3551: Protein of u 26.2 64 0.0014 21.6 2.2 27 8-34 1-27 (82)
109 KOG0518 Actin-binding cytoskel 26.2 5E+02 0.011 25.9 8.8 44 74-117 694-740 (1113)
110 PF08918 PhoQ_Sensor: PhoQ Sen 26.0 29 0.00062 26.6 0.6 41 76-116 76-119 (180)
111 PF08946 Osmo_CC: Osmosensory 25.8 1.5E+02 0.0033 17.5 4.4 29 145-173 11-39 (46)
112 KOG3317 Translocon-associated 25.3 3.2E+02 0.007 21.1 6.2 60 12-81 6-65 (188)
113 PF13464 DUF4115: Domain of un 25.2 1.9E+02 0.0042 18.5 5.8 41 74-116 8-48 (77)
114 COG4856 Uncharacterized protei 24.9 4.7E+02 0.01 22.9 8.0 57 54-114 51-112 (403)
115 PF02038 ATP1G1_PLM_MAT8: ATP1 24.7 89 0.0019 19.0 2.4 21 10-30 15-35 (50)
116 PRK10351 holo-(acyl carrier pr 24.5 1.4E+02 0.003 23.2 4.2 54 80-144 45-98 (187)
117 PRK09738 small toxic polypepti 24.5 75 0.0016 19.4 2.1 21 8-28 3-23 (52)
118 KOG4571 Activating transcripti 24.5 1.1E+02 0.0024 25.5 3.7 29 146-174 255-283 (294)
119 COG2372 CopC Uncharacterized p 24.4 2.9E+02 0.0062 20.2 10.3 57 74-130 61-124 (127)
120 PF08738 Gon7: Gon7 family; I 24.3 2.3E+02 0.0051 19.8 4.9 48 130-177 38-86 (103)
121 PRK09413 IS2 repressor TnpA; R 24.2 1.8E+02 0.0039 20.5 4.5 33 148-180 73-105 (121)
122 KOG2959 Transcriptional regula 24.0 1.1E+02 0.0023 24.2 3.4 35 148-182 128-162 (238)
123 PRK13169 DNA replication intia 24.0 1.1E+02 0.0025 21.6 3.3 20 148-167 10-29 (110)
124 PRK15396 murein lipoprotein; P 23.9 1.8E+02 0.0038 19.3 4.0 32 143-174 22-53 (78)
125 PF14257 DUF4349: Domain of un 23.9 1.1E+02 0.0023 24.7 3.6 27 150-176 166-192 (262)
126 PHA02665 hypothetical protein; 23.8 56 0.0012 26.2 1.8 30 39-68 25-54 (322)
127 COG4890 Predicted outer membra 23.7 80 0.0017 17.6 1.9 17 13-29 6-22 (37)
128 PF14283 DUF4366: Domain of un 23.6 1.2E+02 0.0027 24.1 3.8 27 13-45 162-188 (218)
129 PF08826 DMPK_coil: DMPK coile 22.9 1.8E+02 0.0039 18.3 3.7 31 144-174 30-60 (61)
130 smart00338 BRLZ basic region l 22.5 1.7E+02 0.0036 18.1 3.6 32 144-175 24-55 (65)
131 PF14109 GldH_lipo: GldH lipop 22.3 3.1E+02 0.0067 19.8 5.9 42 74-115 69-115 (131)
132 PF13605 DUF4141: Domain of un 22.3 1.3E+02 0.0029 18.6 2.9 16 27-42 13-28 (55)
133 PF15281 Consortin_C: Consorti 21.5 83 0.0018 22.4 2.1 26 14-40 54-79 (113)
134 PF12276 DUF3617: Protein of u 21.5 61 0.0013 23.9 1.6 15 8-22 1-15 (162)
135 PRK10190 L,D-transpeptidase; P 21.5 78 0.0017 26.7 2.4 22 28-49 15-36 (310)
136 PF14030 DUF4245: Protein of u 21.3 86 0.0019 23.8 2.4 21 8-28 7-27 (169)
137 PF11444 DUF2895: Protein of u 20.9 90 0.0019 24.6 2.4 15 28-42 32-46 (199)
138 COG2373 Large extracellular al 20.8 7.7E+02 0.017 26.0 9.4 63 53-116 407-479 (1621)
139 PRK00965 tetrahydromethanopter 20.6 87 0.0019 21.7 2.1 43 126-169 12-54 (96)
140 PF04977 DivIC: Septum formati 20.5 2.1E+02 0.0045 18.0 3.9 9 157-165 42-50 (80)
141 TIGR02962 hdxy_isourate hydrox 20.4 3.2E+02 0.007 19.3 5.2 44 74-117 18-69 (112)
142 COG3726 AhpA Uncharacterized m 20.4 32 0.00068 27.1 -0.2 58 74-135 87-153 (214)
143 COG1938 Archaeal enzymes of AT 20.1 2.4E+02 0.0051 23.0 4.8 32 146-177 204-235 (244)
144 PF13677 MotB_plug: Membrane M 20.1 59 0.0013 20.1 1.1 19 6-24 19-37 (58)
145 PRK15036 hydroxyisourate hydro 20.1 3.6E+02 0.0078 19.8 7.7 44 74-117 44-94 (137)
No 1
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-35 Score=224.10 Aligned_cols=153 Identities=46% Similarity=0.809 Sum_probs=138.7
Q ss_pred cceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcce
Q 030061 29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNY 108 (183)
Q Consensus 29 ~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y 108 (183)
+..+.|+.|+||+++++|+.|++.+|..+.|.|.+.++..+..+ .+++.|.||.|+.+++.++.++|+|+|++.++|.|
T Consensus 17 ~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~-~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y 95 (210)
T KOG1691|consen 17 LPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSH-KLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMY 95 (210)
T ss_pred hhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccc-eEEEEEEcCCCceeehhhccccceEEEEeccCCcE
Confidence 35679999999999999999999999999999999965422223 89999999999999999999999999999999999
Q ss_pred EEEEEeCCCC-CCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061 109 MACFWLGSNP-QKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP 182 (183)
Q Consensus 109 ~~Cf~n~~~~-~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~ 182 (183)
.+||.+.... .......|+|||++|.+++||+++||+++++|+|.++++|++.+++|++|+.|+|.||++||++
T Consensus 96 ~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~ 170 (210)
T KOG1691|consen 96 EACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT 170 (210)
T ss_pred EEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999994332 1235699999999999999999999999999999999999999999999999999999999975
No 2
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-34 Score=214.87 Aligned_cols=144 Identities=17% Similarity=0.364 Sum_probs=132.3
Q ss_pred eeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEE
Q 030061 32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC 111 (183)
Q Consensus 32 ~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~C 111 (183)
+.++-+.+++++++||+|++..|+.+.++|+|.+|+ .. ++++.|++|+|++++..+..+.|+|+|+|+..|.|++|
T Consensus 18 ~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg---~~-~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fC 93 (201)
T KOG1692|consen 18 AAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG---FL-GVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFC 93 (201)
T ss_pred hhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC---cc-ceeEEEECCCCchhhhcccccCceEEEEecCCceEEEE
Confidence 578888999999999999999999999999999875 34 99999999999999998888899999999999999999
Q ss_pred EEeCCCCCCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061 112 FWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP 182 (183)
Q Consensus 112 f~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~ 182 (183)
|+|..+ +..++.|.|+|++|...+ ++..+++.+.++|+..+++|++.|.+++.||+|+..||++||+.
T Consensus 94 F~N~~s--~mtpk~V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~ 161 (201)
T KOG1692|consen 94 FSNKMS--TMTPKTVMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNT 161 (201)
T ss_pred ecCCCC--CCCceEEEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 999976 457999999999987755 45588889999999999999999999999999999999999974
No 3
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-32 Score=206.55 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=132.8
Q ss_pred cceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEe--eCC-----CCCCCCeeEEEEECCCCC--eEEeeeccceeeEE
Q 030061 29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI--DEA-----HPEHPPTVSAKVTSPYGN--NLHHNENVTHGQFA 99 (183)
Q Consensus 29 ~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~--~~~-----~~~~~~~v~~~V~dp~g~--~v~~~~~~~~g~f~ 99 (183)
...++|++|++..+++|||+|++|+|+++.|+|.+. +.. ...+. .+.+.|.+|.++ +|.+++..++|+|+
T Consensus 15 ~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~-gm~VeV~e~fdnnh~Vl~q~~ss~G~ft 93 (215)
T KOG1690|consen 15 ATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNI-GMHVEVKETFDNNHVVLSQQYSSEGDFT 93 (215)
T ss_pred HhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCc-eEEEEeecCCCCceEEEeecCCCCCceE
Confidence 458899999999999999999999999999999986 211 11133 889999999877 89999999999999
Q ss_pred EEeccCcceEEEEEeCCC-CCCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030061 100 FTTTEAGNYMACFWLGSN-PQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSL 178 (183)
Q Consensus 100 f~a~~~G~Y~~Cf~n~~~-~~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r 178 (183)
|++..+|+|+||+....+ |+.+++.+|.+|+++|..++++++. ++..+.++.++++|.+++.+|+.||.|+|.||++
T Consensus 94 Fta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~ 171 (215)
T KOG1690|consen 94 FTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREET 171 (215)
T ss_pred EEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997765 5667889999999999998887654 5677888999999999999999999999999999
Q ss_pred cCCC
Q 030061 179 FLPP 182 (183)
Q Consensus 179 ~r~~ 182 (183)
+|++
T Consensus 172 FR~t 175 (215)
T KOG1690|consen 172 FRDT 175 (215)
T ss_pred HHhh
Confidence 9985
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=196.43 Aligned_cols=147 Identities=14% Similarity=0.285 Sum_probs=129.5
Q ss_pred ceeeeEEEEEcCCCcceeeeEcCCCcE-EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcce
Q 030061 30 PVTEAIWLQIPSSGTKCVSEEINSNVV-VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNY 108 (183)
Q Consensus 30 ~~~~al~f~I~~g~~~Cf~e~v~~~~~-v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y 108 (183)
..+..++|+||++.++|||+++++++- .+.+|+|..|+ +. +|++.|.+|+|++|++..++..+.|.|++.+.|+|
T Consensus 19 s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG---~f-DVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y 94 (209)
T KOG1693|consen 19 SEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG---HF-DVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEY 94 (209)
T ss_pred hhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC---ce-eeEEEEECCCCCEEeeccccccccEEEEEecceEE
Confidence 347899999999999999999998665 99999999886 46 99999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCccEEEEEEEEEccccccchhh-hhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061 109 MACFWLGSNPQKVADATLGLDWRIGFSAKDWESV-AKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP 182 (183)
Q Consensus 109 ~~Cf~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~-a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~ 182 (183)
+|||+|..+ +..+|.|.++++.|.+..-.++. +....++.+|..+..|+..|+.|.+.|.|+|.||+|.|.|
T Consensus 95 ~fCFsN~fs--tf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~t 167 (209)
T KOG1693|consen 95 TFCFSNEFS--TFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRST 167 (209)
T ss_pred EEEecCccc--cccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999876 45789999999999664332222 2234678999999999999999999999999999999986
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=178.93 Aligned_cols=145 Identities=17% Similarity=0.297 Sum_probs=125.2
Q ss_pred eeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEE
Q 030061 32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC 111 (183)
Q Consensus 32 ~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~C 111 (183)
...++|+||||+++|||..++.+..+..+|+|.+| ++| . +|++++.+|.|.++.+.+.+..|.+++.+.++|.|++|
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~GD-l-~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C 109 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AGD-L-DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC 109 (236)
T ss_pred ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CCc-c-ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence 46899999999999999999999999999999987 333 4 99999999999999999888999999999999999999
Q ss_pred EEeCCCCCCCccEEEEEEEEE---cccc---ccchhhhh-----ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030061 112 FWLGSNPQKVADATLGLDWRI---GFSA---KDWESVAK-----KDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFL 180 (183)
Q Consensus 112 f~n~~~~~~~~~~~V~f~i~~---g~~~---~d~~~~a~-----~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r 180 (183)
|+|++|++ +.|.|+|++.. |+.. ..|.+.++ ..+++.+++.+..+..+|..+...|..+|+||+|.|
T Consensus 110 fDNsFS~f--s~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr 187 (236)
T KOG3287|consen 110 FDNSFSTF--SRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR 187 (236)
T ss_pred EcCccccc--cceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999854 68999999943 3222 23443322 247889999999999999999999999999999998
Q ss_pred C
Q 030061 181 P 181 (183)
Q Consensus 181 ~ 181 (183)
+
T Consensus 188 ~ 188 (236)
T KOG3287|consen 188 N 188 (236)
T ss_pred H
Confidence 5
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=99.94 E-value=1.8e-28 Score=187.94 Aligned_cols=144 Identities=25% Similarity=0.467 Sum_probs=0.0
Q ss_pred eEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEE--CCCCCeEEeeecc-ceeeEEEEeccCcceEE
Q 030061 34 AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVT--SPYGNNLHHNENV-THGQFAFTTTEAGNYMA 110 (183)
Q Consensus 34 al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~--dp~g~~v~~~~~~-~~g~f~f~a~~~G~Y~~ 110 (183)
|++|+|+||+++||+|++++++.+.++|.+.+++ +.. .|++.|+ +|+|+.++++... ++|+|+|++.++|+|++
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~-~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~i 77 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAY-DVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQI 77 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccc-eEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEE
Confidence 6899999999999999999999999999999664 234 9999999 5556888888655 45799999999999999
Q ss_pred EEEeCCCCCCCcc-EEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061 111 CFWLGSNPQKVAD-ATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP 182 (183)
Q Consensus 111 Cf~n~~~~~~~~~-~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~ 182 (183)
||+|+.+.+ .+ +.|+|++++|.++.|+++.++++++++++..|+++...++.|+++|+|++.||+++|+.
T Consensus 78 Cf~n~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~ 148 (183)
T PF01105_consen 78 CFDNSSSSF--SPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQL 148 (183)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEcCCCCc--cccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997632 33 99999999998777778889999999999999999999999999999999999999874
No 7
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.67 E-value=0.14 Score=35.63 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=14.1
Q ss_pred eeeEEEEeccCcceEE-EEEeCC
Q 030061 95 HGQFAFTTTEAGNYMA-CFWLGS 116 (183)
Q Consensus 95 ~g~f~f~a~~~G~Y~~-Cf~n~~ 116 (183)
...+.|++.++|+|.| |=.+..
T Consensus 75 ~~~~~f~~~~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 75 TATVTFTPLKPGEYEFYCTMHPN 97 (104)
T ss_dssp EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred EEEEEEcCCCCEEEEEEcCCCCc
Confidence 5678889999999987 865543
No 8
>PRK02710 plastocyanin; Provisional
Probab=93.48 E-value=1.9 Score=30.78 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHhhhcccceeeeEEEEEcCCC-cceee---eEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCC
Q 030061 10 RATVLPLILLLCLACYICVVPVTEAIWLQIPSSG-TKCVS---EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGN 85 (183)
Q Consensus 10 ~~~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~-~~Cf~---e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~ 85 (183)
|..+++.+++++.++.......+...++.+.... .-.|. -+++.|+.|. +... +..+ + ++.+ .+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~-~~~~--H-~v~~--~~~~~- 76 (119)
T PRK02710 6 RSIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNN-KLAP--H-NAVF--DGAKE- 76 (119)
T ss_pred HHHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEEC-CCCC--c-eEEe--cCCcc-
Confidence 3444455555555554444455667777776432 33555 3566788754 3322 2221 2 3332 22111
Q ss_pred eEEee-eccceeeEEEEeccCcceEE-EE
Q 030061 86 NLHHN-ENVTHGQFAFTTTEAGNYMA-CF 112 (183)
Q Consensus 86 ~v~~~-~~~~~g~f~f~a~~~G~Y~~-Cf 112 (183)
.-... ...+...++++...+|.|.+ |-
T Consensus 77 ~~~~~~~~~pg~t~~~tF~~~G~y~y~C~ 105 (119)
T PRK02710 77 LSHKDLAFAPGESWEETFSEAGTYTYYCE 105 (119)
T ss_pred ccccccccCCCCEEEEEecCCEEEEEEcC
Confidence 11111 11233456666666999976 85
No 9
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=92.23 E-value=2.5 Score=31.08 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=24.1
Q ss_pred EEEeccCcceEEEEEeCCCCCCCccEEEEEEE
Q 030061 99 AFTTTEAGNYMACFWLGSNPQKVADATLGLDW 130 (183)
Q Consensus 99 ~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i 130 (183)
+++.+.+|.|-++|+|+.|++ -+|++.+.+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~--rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWF--RSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCcceeE--EeeEEEEEE
Confidence 566788999999999999964 467777655
No 10
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=91.90 E-value=1.3 Score=28.32 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=40.7
Q ss_pred ceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc-----ceeeEEEEeccCcceEEEE
Q 030061 45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV-----THGQFAFTTTEAGNYMACF 112 (183)
Q Consensus 45 ~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~-----~~g~f~f~a~~~G~Y~~Cf 112 (183)
..|.-+++++..+.+.- . +. .. +.++.+++++|..+...... ..-...|++..+|.|.+=+
T Consensus 3 D~y~f~v~ag~~l~i~l--~-~~---~~-d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTIDL--S-GG---SG-DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEESTTEEEEEEE--C-ET---TS-SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEE--c-CC---CC-CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 35666777777766553 3 22 12 67799999998877663222 2356788899999998744
No 11
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=91.74 E-value=2.9 Score=28.37 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=39.6
Q ss_pred CCcEEEEEEEEeeCC----CCCCCCeeEEEEECCCCCeEEeeec-c--ceeeEEEEe--c---cCcceEEEEEeC
Q 030061 53 SNVVVLADYYVIDEA----HPEHPPTVSAKVTSPYGNNLHHNEN-V--THGQFAFTT--T---EAGNYMACFWLG 115 (183)
Q Consensus 53 ~~~~v~~~y~v~~~~----~~~~~~~v~~~V~dp~g~~v~~~~~-~--~~g~f~f~a--~---~~G~Y~~Cf~n~ 115 (183)
.|+.|.+.--+.+.. .+.+. .+.+.|+||+|+.+..... . ..|.++++- . ..|.|++=+...
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~-~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANS-PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSE-EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccCC-ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 577777777765433 12234 9999999999999877655 2 344444333 2 258888888875
No 12
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=91.15 E-value=3.4 Score=27.98 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=35.7
Q ss_pred eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061 74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL 126 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V 126 (183)
.+.+.|.+|+|+.+-.+ .+...| ..+|+....|.|++.+.-....-..++..+
T Consensus 33 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~~I~gSPF~v 88 (93)
T smart00557 33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTV 88 (93)
T ss_pred cEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEE
Confidence 89999999999655332 222345 567888999999998886643212344444
No 13
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=91.13 E-value=1.5 Score=29.02 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=28.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEE
Q 030061 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFT 101 (183)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~--~~~g~f~f~ 101 (183)
+..+.+.|.+..+. . .+.+.|+|.+|++|.+... .+.|.+.|+
T Consensus 11 ~~~~~~~~~l~~~a----~-~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~ 55 (81)
T PF13860_consen 11 GTKGSIEYTLPEDA----D-NVTVTIYDSNGQVVRTISLGSQSAGEHSFT 55 (81)
T ss_dssp TCEEEEEEEECSSC----E-EEEEEEEETTS-EEEEEEEEECSSEEEEEE
T ss_pred CEEEEEEEeCCCcc----c-EEEEEEEcCCCCEEEEEEcCCcCCceEEEE
Confidence 35788888887442 3 8999999999999977532 234444444
No 14
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=87.98 E-value=2.1 Score=29.90 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=37.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc--eeeEEEEe--ccCcceEEEEEeCC
Q 030061 53 SNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT--HGQFAFTT--TEAGNYMACFWLGS 116 (183)
Q Consensus 53 ~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~--~g~f~f~a--~~~G~Y~~Cf~n~~ 116 (183)
++..+.+.|... .. .+.++|+|.+|++++++.... .....+.. ...|.|.+=+.+..
T Consensus 35 ~~~~l~I~F~~~------~~-~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~ 95 (106)
T PF11589_consen 35 DGNNLSIEFESP------IG-DVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGN 95 (106)
T ss_dssp ETTEEEEEESS--------S-EEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECT
T ss_pred eCCEEEEEEcCC------CC-CEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCC
Confidence 356677777432 12 999999999999999975433 33455555 56899999999886
No 15
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=85.77 E-value=4.4 Score=32.49 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=40.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEEe---------ccCcceEEEEEeC
Q 030061 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFTT---------TEAGNYMACFWLG 115 (183)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~--~~~g~f~f~a---------~~~G~Y~~Cf~n~ 115 (183)
+..+.+.|...++. . .+.+.|+|.+|++|++..- ...|.+.|+- -.+|.|++=+...
T Consensus 112 ~~~~~~~~~l~~~a----~-~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 112 GGTTPFGVELPSAA----D-NVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred CCceEEEEEcCCCC----c-EEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 34567777765432 3 8999999999999987533 3477777743 3379999988654
No 16
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=85.53 E-value=4.6 Score=33.74 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=39.9
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc----ceeeEEEEe---------ccCcceEEEEEeC
Q 030061 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV----THGQFAFTT---------TEAGNYMACFWLG 115 (183)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~----~~g~f~f~a---------~~~G~Y~~Cf~n~ 115 (183)
..+.+.|.+..+...+.. .+.+.|+|.+|++|++-.-. ..|.+.|+- -..|.|+|=....
T Consensus 149 ~~~~~~~~l~~~~~~~a~-~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 149 NKLSFSLFFDEKIDASKG-VPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred CceEEEEeccccccccCc-eEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 356677766432211233 89999999999999875432 347777774 2369999988643
No 17
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=84.21 E-value=11 Score=26.91 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCcceeeeEcCC-CcEEEEEEEEeeCCCCCCCCeeEEEEECCC-CCeEEeeec---cceeeEEEEe---ccCcceEEEEE
Q 030061 42 SGTKCVSEEINS-NVVVLADYYVIDEAHPEHPPTVSAKVTSPY-GNNLHHNEN---VTHGQFAFTT---TEAGNYMACFW 113 (183)
Q Consensus 42 g~~~Cf~e~v~~-~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~-g~~v~~~~~---~~~g~f~f~a---~~~G~Y~~Cf~ 113 (183)
+.-.|+.+++.. +.. ++|+. +|+ .--+.|+|.+ +.++|+... .....|+..- +...+|-+||.
T Consensus 37 ~rLFcVs~Die~L~aE--v~f~m-DGe------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ft 107 (132)
T PF15417_consen 37 GRLFCVSEDIEALDAE--VYFQM-DGE------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFT 107 (132)
T ss_pred ceEEEEecchheeeeE--EEEEE-cCc------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEe
Confidence 456899988864 333 44544 354 4556788865 567888532 2344566554 55779999999
Q ss_pred eCC
Q 030061 114 LGS 116 (183)
Q Consensus 114 n~~ 116 (183)
...
T Consensus 108 Gtk 110 (132)
T PF15417_consen 108 GTK 110 (132)
T ss_pred ccE
Confidence 764
No 18
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=83.76 E-value=16 Score=28.20 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=39.6
Q ss_pred cceeeeE--cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe-eeccce--eeEEEE-eccCcceEEEEEeCCC
Q 030061 44 TKCVSEE--INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH-NENVTH--GQFAFT-TTEAGNYMACFWLGSN 117 (183)
Q Consensus 44 ~~Cf~e~--v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~-~~~~~~--g~f~f~-a~~~G~Y~~Cf~n~~~ 117 (183)
.-+|+-+ +..++.+.+.|... . ...+.+.+|+|+.+.. ..+... .++... +.+.|..++.+.|..+
T Consensus 18 ~gtv~ID~tvG~~T~f~v~w~~~-------~-~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~ 89 (179)
T PF09315_consen 18 TGTVYIDSTVGNNTVFTVTWQNS-------S-PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSS 89 (179)
T ss_pred EeEEEECCCCCCCeEEEEEECCC-------C-CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCC
Confidence 3444444 34456666665433 1 5567799999998866 222222 344443 3568999999877654
No 19
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=83.67 E-value=2.8 Score=26.51 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=35.4
Q ss_pred eeEEEEECCCCCeEEe--eeccceeeEEEEeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGNNLHH--NENVTHGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~--~~~~~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
++.|.+++.++..+.. ..-...|.+.|.--..|.|.+=.....
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP 47 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAP 47 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECC
Confidence 6889999999888775 444468999999999999999888754
No 20
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.50 E-value=5.1 Score=32.83 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=40.6
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CcceEEEEEeC
Q 030061 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWLG 115 (183)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~--~~~~g~f~f~a~~---------~G~Y~~Cf~n~ 115 (183)
..+.+.|.+... .. .+.+.|+|.+|++|++.. ....|.+.|+-.. .|.|+|=+...
T Consensus 128 ~~~~~~~~l~~~----a~-~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~ 194 (259)
T PRK12812 128 ELIALKLYFPED----SD-EGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYN 194 (259)
T ss_pred ceeEEEEecCCc----Cc-eEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 467777777533 23 899999999999998754 3346777776644 69999988744
No 21
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.09 E-value=6.1 Score=31.68 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=39.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecccee--eEEEEe-------ccCcceEEEEEeC
Q 030061 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHG--QFAFTT-------TEAGNYMACFWLG 115 (183)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a-------~~~G~Y~~Cf~n~ 115 (183)
+..+.+.|...++. . .+.+.|+|.+|++|++..- ..| .|.|.- -..|.|+|=..-.
T Consensus 110 g~~~~~~~~l~~~a----~-~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~ 174 (223)
T PRK12813 110 GTPVTISPNPAADA----D-KAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESY 174 (223)
T ss_pred CceeEEEEeccCCC----c-eEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEE
Confidence 45777888776432 3 8999999999999987643 334 455542 2369999988765
No 22
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=81.08 E-value=4.6 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=30.2
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
...+.+.+.++.......-..+|+|.|.--.+|.|.+=+....
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g 58 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG 58 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence 8888899887777666555579999999666799999887654
No 23
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=78.53 E-value=9 Score=25.78 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=30.2
Q ss_pred eeEEEEECCCCC----eEE-eeecccee--eEEEEeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGN----NLH-HNENVTHG--QFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~----~v~-~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
.+.+.|.+|++. .+. .-....+| ..+|++...|.|++.+.-..
T Consensus 43 ~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 43 EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence 688999999986 332 22222345 56788899999999887654
No 24
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=75.22 E-value=33 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=21.5
Q ss_pred cceeeeEEEEEcCCCc-ceeeeEcCCCcEEEEEEEEe
Q 030061 29 VPVTEAIWLQIPSSGT-KCVSEEINSNVVVLADYYVI 64 (183)
Q Consensus 29 ~~~~~al~f~I~~g~~-~Cf~e~v~~~~~v~~~y~v~ 64 (183)
+......-|++.||+. .=|.+.+. +-.=..+|.+.
T Consensus 20 ~~e~~t~eFdvkP~G~~~t~~~~~~-~~~C~FTYAaq 55 (158)
T PF10572_consen 20 VSEPTTKEFDVKPGGVVHTFSESLG-KYKCTFTYAAQ 55 (158)
T ss_pred cccccceeEEecCCCEEEEeEEecC-ceEEEEEEEec
Confidence 3445678899999976 33333333 44456677776
No 25
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=75.06 E-value=57 Score=30.48 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=49.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCCCCCC---CccEEEEEEE
Q 030061 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQK---VADATLGLDW 130 (183)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~~~~~---~~~~~V~f~i 130 (183)
|+.+.+.-.+..| .+. ...+.|+. +|+.+...+-.....+.|++..+|.|++=++..+..+. -..+.|+|++
T Consensus 401 G~~i~i~v~a~gg---~~~-lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V 475 (667)
T PRK14081 401 GEEIKIRVIAEGG---TNL-RYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKV 475 (667)
T ss_pred CCeEEEEEEecCC---CeE-EEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEE
Confidence 5555555444422 233 77777777 78778777766789999999999999886665543211 2467888777
Q ss_pred E
Q 030061 131 R 131 (183)
Q Consensus 131 ~ 131 (183)
.
T Consensus 476 ~ 476 (667)
T PRK14081 476 H 476 (667)
T ss_pred e
Confidence 4
No 26
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=74.85 E-value=17 Score=22.38 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=31.5
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCCCC--CCCccEEEEEEE
Q 030061 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNP--QKVADATLGLDW 130 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~~~--~~~~~~~V~f~i 130 (183)
.....+.+.+++-+....... .+.|+.-.+|.|+|-+...... +......+.|.|
T Consensus 9 ~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred EEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 555556666665444433222 8999999999999988765432 122236666655
No 27
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=72.12 E-value=17 Score=29.23 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=38.3
Q ss_pred EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEEec---------cCcceEEEEEeC
Q 030061 56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFTTT---------EAGNYMACFWLG 115 (183)
Q Consensus 56 ~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~--~~~g~f~f~a~---------~~G~Y~~Cf~n~ 115 (183)
.+.+.|...++ .. .+.+.|+|.+|++|++.+- ...|.+.|+-. ..|.|+|=+.-.
T Consensus 117 ~~~~~~~l~~~----a~-~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~ 182 (230)
T PRK12633 117 ATPFGIDLQGD----AT-KVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSAS 182 (230)
T ss_pred ceeEEEecCCc----Cc-EEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 44555665433 23 8999999999999987532 34677777642 368999988754
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=71.49 E-value=38 Score=24.97 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=43.6
Q ss_pred eeEEEEEcCCCcceeeeEcCC---CcEEEEEEEEeeCC--CCCCCCeeEEEEECCCCCe--E-Ee-----eecc--ceee
Q 030061 33 EAIWLQIPSSGTKCVSEEINS---NVVVLADYYVIDEA--HPEHPPTVSAKVTSPYGNN--L-HH-----NENV--THGQ 97 (183)
Q Consensus 33 ~al~f~I~~g~~~Cf~e~v~~---~~~v~~~y~v~~~~--~~~~~~~v~~~V~dp~g~~--v-~~-----~~~~--~~g~ 97 (183)
..+.+.|.+..+.----+++. .+..-++|.+.... ..... .|.+.+.+.++-. + .. ..-. ....
T Consensus 25 ~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD-~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~T 103 (135)
T TIGR03096 25 QSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGT-PVKVTVENKSPISEGFSIDAYGISEVIKAGETKT 103 (135)
T ss_pred ceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCC-EEEEEEEeCCCCccceEECCCCcceEECCCCeEE
Confidence 467777775443321122322 33346777776221 11123 7888878766421 1 11 1111 2356
Q ss_pred EEEEeccCcceEE-EEEeC
Q 030061 98 FAFTTTEAGNYMA-CFWLG 115 (183)
Q Consensus 98 f~f~a~~~G~Y~~-Cf~n~ 115 (183)
+.|++.++|.|.+ |=.-+
T Consensus 104 itF~adKpG~Y~y~C~~HP 122 (135)
T TIGR03096 104 ISFKADKAGAFTIWCQLHP 122 (135)
T ss_pred EEEECCCCEEEEEeCCCCC
Confidence 7899999999985 65443
No 29
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=70.72 E-value=18 Score=25.63 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=33.0
Q ss_pred CcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCC
Q 030061 43 GTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 43 ~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
++.|=.-...+.-.+.+.|++... . +. +.+.+.|++.+|..++.... ......+.....|.|++++.-+.
T Consensus 25 g~~~~~~~~ge~~~i~i~~~~~~~-i-~~-~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~~i~~ 94 (142)
T PF14524_consen 25 GEPTSSFESGEPIRIRIDYEVNED-I-DD-PVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTFTIPK 94 (142)
T ss_dssp EES-SSEETTSEEEEEEEEEESS--E-EE-EEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEEEEE-
T ss_pred CCEeeEEeCCCEEEEEEEEEECCC-C-Cc-cEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEEEEcC
Confidence 344444333333344455554321 1 12 48999999999998887432 22223444433666666666544
No 30
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=70.26 E-value=12 Score=26.62 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=27.8
Q ss_pred cCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee
Q 030061 40 PSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90 (183)
Q Consensus 40 ~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~ 90 (183)
..+...++..++.+|...-+..-...++. .- ..+++|++|+|..+.+.
T Consensus 55 ~~~~~~~~tv~L~aG~yyPiRi~~~N~~g--~~-~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 55 STGASKSVTVYLTAGTYYPIRIVYANGGG--PG-SFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SS-SEEEEEEEE-TT-BEEEEEEEEE-SS---E-EEEEEEEETT-S--B--
T ss_pred CCCCceEEEEEEECCcEEEEEEEEEcCCC--ce-EEEEEEECCCCcEEecC
Confidence 45566888889988886655555554431 12 99999999999887765
No 31
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=69.01 E-value=23 Score=28.22 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=38.5
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee-e-ccceeeEEEEec------cCcceEEEEEeC
Q 030061 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-E-NVTHGQFAFTTT------EAGNYMACFWLG 115 (183)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~-~-~~~~g~f~f~a~------~~G~Y~~Cf~n~ 115 (183)
....+.|....+ .. .+.+.|+|.+|++ +.. . ....|.+.|+-. ..|.|+|=+...
T Consensus 110 ~~~~~~~~L~~~----a~-~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~ 172 (218)
T PRK09619 110 DPVAGRLTLKHP----AP-TLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSG 172 (218)
T ss_pred CeeEEEEecCCc----Cc-EEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEe
Confidence 566777876533 23 8999999999997 443 2 234677777753 479999988754
No 32
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=68.66 E-value=16 Score=29.19 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.9
Q ss_pred eeEEEEECCCCCeEEeeec--cceeeEEEEecc---------CcceEEEEEeC
Q 030061 74 TVSAKVTSPYGNNLHHNEN--VTHGQFAFTTTE---------AGNYMACFWLG 115 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~--~~~g~f~f~a~~---------~G~Y~~Cf~n~ 115 (183)
.+.+.|+|.+|++|++..- .+.|.+.|+-.. .|.|+|-..-.
T Consensus 123 ~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~ 175 (221)
T PRK12634 123 FVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT 175 (221)
T ss_pred eEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 8999999999999988643 456777777643 59999999643
No 33
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=48 Score=24.94 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhhhcccceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCCe
Q 030061 11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGNN 86 (183)
Q Consensus 11 ~~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~---~~~~~~v~~~V~dp~g~~ 86 (183)
.+.++.+..||++..+-|...-+.+.+-..|+ +--.-+...|+.+.+-=-|..|+. ++.. .++|.++|-...+
T Consensus 10 ~~il~~~a~l~~a~~l~Lyal~~ni~~fy~Ps--el~~~~~~~G~rlR~GGlV~~GSv~R~~~~~-~v~F~vtD~~~~v 85 (153)
T COG2332 10 WIILAGLAGLALAVGLVLYALRSNIDYFYTPS--ELLEGKVETGQRLRLGGLVEAGSVQRDPGSL-KVSFVVTDGNKSV 85 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCceEEECHH--HhccccccCCcEEEEeeeEeeceEEecCCCc-EEEEEEecCCceE
Confidence 56677777888888777766655444444443 233333444555544433333321 2334 8899999876654
No 34
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=66.48 E-value=28 Score=26.35 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=30.0
Q ss_pred HhhhcccceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCCe
Q 030061 23 ACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGNN 86 (183)
Q Consensus 23 ~~~~~~~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~---~~~~~~v~~~V~dp~g~~ 86 (183)
++.|.+....+.+.|...|.+ -.....+.+..+.+-=-|..|+. ++.. .+.|.|.|....+
T Consensus 22 a~~Lv~~al~~n~~yF~tpsE--v~~~~~~~~~~~RlGG~V~~GSv~r~~~~~-~v~F~vtD~~~~v 85 (155)
T PRK13159 22 AVTLIVLALQRNMSYLFTPSQ--VRAGAAAGYQQFRLGGMVKAGSIQRAADSL-KVSFTVIDKNAAT 85 (155)
T ss_pred HHHHHHHHhhhCceEEECHHH--HhcCCcccCCeEEEccEEecCcEEEcCCCc-EEEEEEEcCCcEE
Confidence 333334445566666666644 22222334444443333332321 2334 7888888875543
No 35
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=64.99 E-value=38 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=12.9
Q ss_pred CCCeeEEEEECCCCCeEEeee
Q 030061 71 HPPTVSAKVTSPYGNNLHHNE 91 (183)
Q Consensus 71 ~~~~v~~~V~dp~g~~v~~~~ 91 (183)
.+ ..++.|+|++|+.||...
T Consensus 23 gq-~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 23 GQ-RYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp S---EEEEEE-TT--EEEETT
T ss_pred CC-EEEEEEECCCCCEEEEec
Confidence 35 999999999999999864
No 36
>PF15069 FAM163: FAM163 family
Probab=63.31 E-value=5.9 Score=29.44 Aligned_cols=18 Identities=28% Similarity=0.833 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhhhccc
Q 030061 12 TVLPLILLLCLACYICVV 29 (183)
Q Consensus 12 ~~~~~~~~~c~~~~~~~~ 29 (183)
+.|+.|+|||..|+||-=
T Consensus 11 gILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 11 GILATVILLCIIAVLCYC 28 (143)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 578999999999988863
No 37
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=61.27 E-value=44 Score=25.36 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHhhhcccceeeeEEEEEcCCCcceeeeE------cCCCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCCe
Q 030061 20 LCLACYICVVPVTEAIWLQIPSSGTKCVSEE------INSNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGNN 86 (183)
Q Consensus 20 ~c~~~~~~~~~~~~al~f~I~~g~~~Cf~e~------v~~~~~v~~~y~v~~~~~---~~~~~~v~~~V~dp~g~~ 86 (183)
+.+++.+.+....+.+.|...|.+- ...+ .+.+..+.+.=.|..|+. ++.. .+.|.|.|..+.+
T Consensus 19 ~~~a~~Lvl~al~~n~~yF~tPsev--~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~-~v~F~vtD~~~~v 91 (159)
T PRK13150 19 LGLTTALVLYALRANIDLFYTPGEI--LYGKRETQQLPAVGQRLRVGGMVMPGSVRRDPDSL-KVNFSLYDAEGSV 91 (159)
T ss_pred HHHHHHHHHHHHhhCccEEeCHHHH--hccccccccCcCCCCEEEEeeEEeCCcEEECCCCc-EEEEEEEcCCcEE
Confidence 3334444444555556666666442 1111 234666655555543431 2234 7899999976654
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.95 E-value=3.9 Score=28.30 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhccc
Q 030061 16 LILLLCLACYICVV 29 (183)
Q Consensus 16 ~~~~~c~~~~~~~~ 29 (183)
++|.|+||++|+++
T Consensus 7 llL~l~LA~lLlis 20 (95)
T PF07172_consen 7 LLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455544443
No 39
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=59.28 E-value=62 Score=31.74 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=34.2
Q ss_pred eeEEEEECCCCCeEEe---eeccceeeEEEEeccCcceEEEEEeCCCC
Q 030061 74 TVSAKVTSPYGNNLHH---NENVTHGQFAFTTTEAGNYMACFWLGSNP 118 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~---~~~~~~g~f~f~a~~~G~Y~~Cf~n~~~~ 118 (183)
++...+.||+|+..-. .-+...=+..|+.++.|.|++|..+...+
T Consensus 884 d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 884 DITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred ceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 8999999999976322 22222347789999999999999998754
No 40
>PHA02932 hypothetical protein; Provisional
Probab=56.74 E-value=95 Score=24.40 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhcccc------------------eeeeEEEEEcCC-CcceeeeE--cCCCcEEEEEEEEeeCCCCCCCC
Q 030061 15 PLILLLCLACYICVVP------------------VTEAIWLQIPSS-GTKCVSEE--INSNVVVLADYYVIDEAHPEHPP 73 (183)
Q Consensus 15 ~~~~~~c~~~~~~~~~------------------~~~al~f~I~~g-~~~Cf~e~--v~~~~~v~~~y~v~~~~~~~~~~ 73 (183)
.++++.|++++++-+. ++.+++.+|+.. .+||+..+ +..++.+.+ .|. ..
T Consensus 5 ili~l~~s~~ls~~l~~~n~~~~~dyryWnlAa~LtIGLny~I~Eti~~EC~m~e~yi~~nstivl-----TGY---Gl- 75 (221)
T PHA02932 5 ILILLFCSASLSYSLEYKNTICRQDYRYWNLAAELTIGLNYDINETIIGECHMSESYIDRNSTIVL-----TGY---GL- 75 (221)
T ss_pred hhhHHHHHHhhcceeecCCcccccchheeeeeeeEEeeeceecchhhhceeeecceeecccceEEE-----Ecc---cE-
Confidence 4567788888765543 235566666543 36899884 444555443 121 13
Q ss_pred eeEEEEECCCCCeEEeeeccc-ee---eEEEEeccCc
Q 030061 74 TVSAKVTSPYGNNLHHNENVT-HG---QFAFTTTEAG 106 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~-~g---~f~f~a~~~G 106 (183)
.|+++|.+-+++.|...++.- .+ -.-|+|+...
T Consensus 76 ~Ini~it~i~q~~VAaaeG~g~nNkL~illF~t~d~s 112 (221)
T PHA02932 76 EINITITDIDQRFVAAAEGVGKNNKLSILLFTTQDLS 112 (221)
T ss_pred EEEEEEEeecceeEeeeeccccCCEEEEEEEEcCccc
Confidence 777777777777777766652 22 3446665543
No 41
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.93 E-value=25 Score=27.30 Aligned_cols=55 Identities=5% Similarity=0.055 Sum_probs=35.2
Q ss_pred cceEEEEEeCCCCCCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHH
Q 030061 106 GNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQV 162 (183)
Q Consensus 106 G~Y~~Cf~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l 162 (183)
-..-+|+.|..+ +-.--++.|+++....+.|-.+.......+.++.+|+.+..++
T Consensus 81 qklvlvI~~~~t--gEvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQI 135 (203)
T KOG3285|consen 81 QKLVLVITSKHT--GEVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQI 135 (203)
T ss_pred ceEEEEEEeccc--ccchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHHH
Confidence 456688988875 3356789999988777666444444455556666555554443
No 42
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=54.96 E-value=57 Score=24.77 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=31.3
Q ss_pred hhhcccceeeeEEEEEcCCCcceeee----EcCCCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCCe
Q 030061 24 CYICVVPVTEAIWLQIPSSGTKCVSE----EINSNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGNN 86 (183)
Q Consensus 24 ~~~~~~~~~~al~f~I~~g~~~Cf~e----~v~~~~~v~~~y~v~~~~~---~~~~~~v~~~V~dp~g~~ 86 (183)
+.|.+....+.+.+...|.+-.=-.. ..+.+..+.+.=.|..|+. ++.. .+.|.|.|....+
T Consensus 23 ~~L~l~al~~n~~yF~tPsev~~~~~~~~~~~~~g~~iRvgG~V~~GSi~r~~~~l-~v~F~vtD~~~~v 91 (160)
T PRK13165 23 IGLVLYALRSNIDLFYTPGEILYGKRETQQKPEVGQRLRVGGMVMPGSVQRDPNSL-KVSFTLYDAGGSV 91 (160)
T ss_pred HHHHHHHHhhCccEEeCHHHHhccccccccccCCCCEEEEeeEEeCCcEEECCCCe-EEEEEEEcCCeEE
Confidence 33444455555666666654211110 1334666665555554431 2233 6888898875544
No 43
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=54.17 E-value=26 Score=24.08 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=21.0
Q ss_pred eeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECC-CCCeEEeeeccceeeEEEEeccC
Q 030061 46 CVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSP-YGNNLHHNENVTHGQFAFTTTEA 105 (183)
Q Consensus 46 Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp-~g~~v~~~~~~~~g~f~f~a~~~ 105 (183)
+.....+.|..+.+.-.-..| . .+....+|| +|+......-...+...|+++..
T Consensus 26 y~~VY~~~Gr~~~vdl~~l~g-----~-~~~a~WfdPR~G~~~~~g~~~~~~~~~F~pP~~ 80 (93)
T PF12904_consen 26 YALVYTPTGRPFTVDLSKLSG-----K-KVKAWWFDPRTGKYTYIGEFSNKGIQTFTPPSG 80 (93)
T ss_dssp EEEEEESS---EEEEGGGSS------S-EEEEEEEETTT-BEEEEEEEES-SEEEE--SS-
T ss_pred EEEEECCCCCEEEEEcccccC-----C-ceeEEEEcCCCCCEEEeeeecCCcceEecCCCC
Confidence 444445555554444333222 1 566666666 34443333222345556655444
No 44
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=52.92 E-value=91 Score=23.03 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=41.2
Q ss_pred eEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCC-eEEeeecc----------cee--eEEEEeccCcceEEEEEeC
Q 030061 49 EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGN-NLHHNENV----------THG--QFAFTTTEAGNYMACFWLG 115 (183)
Q Consensus 49 e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~-~v~~~~~~----------~~g--~f~f~a~~~G~Y~~Cf~n~ 115 (183)
..+.+|+.+-+..++...+..++. ...++.+-|+|+ .+...++. .++ +.-|++......++=|+-.
T Consensus 42 k~I~~GeTvEIR~~l~reG~y~~t-~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~~~FRLYYTS~s~~~q~idv~ve 120 (137)
T PF12988_consen 42 KKIKKGETVEIRCELKREGNYADT-RYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEKEVFRLYYTSRSDDQQTIDVYVE 120 (137)
T ss_dssp SS--TTEEEEEEEEEEESS--SS----EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-SEEEEEEEE-SSS-EEEEEEEE
T ss_pred cccCCCCEEEEEEEEecCceeccc-EEEEEEEeecCCEEEEecCCcEeccccceecCcCEEEEEEecCCCCCceeEEEEE
Confidence 357789999999999865533333 666777777765 23322221 233 4456777777776666666
Q ss_pred CCCCCCccEEEEEEE
Q 030061 116 SNPQKVADATLGLDW 130 (183)
Q Consensus 116 ~~~~~~~~~~V~f~i 130 (183)
+++ +..+.++|++
T Consensus 121 Dnf--Gq~~ql~f~F 133 (137)
T PF12988_consen 121 DNF--GQEQQLSFSF 133 (137)
T ss_dssp ETT--TEEEEEEEEE
T ss_pred eCC--CCEEEEEEec
Confidence 553 2556666665
No 45
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.93 E-value=41 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 030061 150 GVELHLKRLEAQVQSIHENLLFL 172 (183)
Q Consensus 150 ~le~~l~~l~~~l~~I~~eq~y~ 172 (183)
.+|.++.+++..+..++.+..-+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i 26 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEI 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 46
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=51.52 E-value=17 Score=26.41 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=24.5
Q ss_pred ceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCC
Q 030061 30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGN 85 (183)
Q Consensus 30 ~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~---~~~~~~v~~~V~dp~g~ 85 (183)
...++..+++.|.+-. .+..+.+..+.+.=.|..|+. ++.. .++|.|.|....
T Consensus 28 ~~~~~~~yy~t~se~~--~~~~~~~~~vrv~G~V~~gSv~~~~~~~-~~~F~i~D~~~~ 83 (131)
T PF03100_consen 28 SFSDSAVYYLTPSELA--AEPQKVGRKVRVGGLVVEGSVEYDPDGN-TLTFTITDGGKE 83 (131)
T ss_dssp ----SSS-EE-TTTTT--TTST-TTSEEEEEEEEECTTEEE-TTSS-EEEEEEE-SS-E
T ss_pred HhhccceEEcCHHHHh--hccccCCceEEEeeEEccCCEEEcCCCC-EEEEEEEECCcE
Confidence 3445555555554311 111135677777666765432 2334 899999988543
No 47
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=51.44 E-value=15 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=16.6
Q ss_pred ehhhhhhHHHHHHHHHHHhhhc
Q 030061 6 ISLDRATVLPLILLLCLACYIC 27 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~ 27 (183)
..+||+-+-.++|++|..++++
T Consensus 10 VELNRTSLY~GLllifvl~vLF 31 (37)
T PF02419_consen 10 VELNRTSLYWGLLLIFVLAVLF 31 (37)
T ss_dssp BE--CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHh
Confidence 4688999999999999988654
No 48
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=50.73 E-value=76 Score=21.45 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=37.0
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeC
Q 030061 52 NSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (183)
Q Consensus 52 ~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~ 115 (183)
.+.+-|.+... .+|+ | .+.--+++.|++|+--..-....+|+|.|-+ .+|..++=.-.+
T Consensus 5 ~ke~VItG~V~-~~G~-P--v~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~ 63 (85)
T PF07210_consen 5 EKETVITGRVT-RDGE-P--VGGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSR 63 (85)
T ss_pred cceEEEEEEEe-cCCc-C--CCCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEcc
Confidence 34455566555 2232 2 1255677899999875555555689999988 567777655443
No 49
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=50.31 E-value=12 Score=22.23 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHhhhcccc
Q 030061 10 RATVLPLILLLCLACYICVVP 30 (183)
Q Consensus 10 ~~~~~~~~~~~c~~~~~~~~~ 30 (183)
|.+++..+++.|++.+++++.
T Consensus 5 rwiili~iv~~Cl~lyl~ald 25 (47)
T PRK10299 5 RWVVLVVVVLACLLLWAQVFN 25 (47)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 567777888889888766653
No 50
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=49.48 E-value=57 Score=24.39 Aligned_cols=65 Identities=17% Similarity=0.055 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcccceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCC-C-CCCCeeEEEEECCCC
Q 030061 17 ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH-P-EHPPTVSAKVTSPYG 84 (183)
Q Consensus 17 ~~~~c~~~~~~~~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~-~-~~~~~v~~~V~dp~g 84 (183)
++++.+++++.+....+.+.+.+.|.+- .......+..+.+.=.|..|+. . +.. .++|.|.|...
T Consensus 16 ~~~~~~~~~L~~~a~~~~~~yf~tpse~--~~~~~~~g~~vrvgG~V~~gSi~~~~~~-~~~F~ltD~~~ 82 (148)
T PRK13254 16 LAALGLAVALVLYALRQNIVFFYTPSEV--AEGEAPAGRRFRLGGLVEKGSVQRGDGL-TVRFVVTDGNA 82 (148)
T ss_pred HHHHHHHHHHHHHHHHhCCceeeCHHHH--hcCCccCCCeEEEeEEEecCcEEeCCCC-EEEEEEEeCCe
Confidence 3344444444455566677777766542 1122234555554444443332 1 233 88999998744
No 51
>PRK14749 hypothetical protein; Provisional
Probab=48.83 E-value=18 Score=19.41 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhcc
Q 030061 13 VLPLILLLCLACYICV 28 (183)
Q Consensus 13 ~~~~~~~~c~~~~~~~ 28 (183)
-.+.+++.|+++++-+
T Consensus 6 WiLG~~lAc~f~ilna 21 (30)
T PRK14749 6 WFVGILLMCSLSTLVL 21 (30)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678899999987544
No 52
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.66 E-value=1.2e+02 Score=23.31 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=23.4
Q ss_pred eeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEEC
Q 030061 47 VSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTS 81 (183)
Q Consensus 47 f~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~d 81 (183)
.-..+..|..+.++|.+.+-|. . +-.++.+.|
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~--~-~A~dV~l~D 61 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGS--S-AAYDVKLTD 61 (181)
T ss_pred ccccccCCcEEEEEEEEEECCC--C-eEEEEEEEC
Confidence 3445667999999999986542 2 277888888
No 53
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=48.25 E-value=4.4 Score=32.73 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhhhcccceeeeEEEEEcCCC
Q 030061 12 TVLPLILLLCLACYICVVPVTEAIWLQIPSSG 43 (183)
Q Consensus 12 ~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~ 43 (183)
.+|+++|+|||+|- ...++..+-+.|-+
T Consensus 12 ~tllvvl~lsLvcs----vivagaav~Lkp~Q 39 (264)
T COG2869 12 GTLLVVLVLSLVCS----VIVAGAAVGLKPIQ 39 (264)
T ss_pred eeehhHHHHHHHHH----HHHhhhheeeChHH
Confidence 47899999999993 33345555566654
No 54
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=48.13 E-value=21 Score=20.26 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.6
Q ss_pred ehhhhhhHHHHHHHHHHHhhhc
Q 030061 6 ISLDRATVLPLILLLCLACYIC 27 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~ 27 (183)
..+||+-+-++.|+++..++++
T Consensus 12 VELNRTSLy~GlLlifvl~vLF 33 (39)
T PRK00753 12 VELNRTSLYLGLLLVFVLGILF 33 (39)
T ss_pred ceechhhHHHHHHHHHHHHHHH
Confidence 4689999999999999988754
No 55
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=46.07 E-value=83 Score=20.68 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=25.7
Q ss_pred eeEEEEeccCcceEEEEEeCCCCCCCc-cEEEEEEEE
Q 030061 96 GQFAFTTTEAGNYMACFWLGSNPQKVA-DATLGLDWR 131 (183)
Q Consensus 96 g~f~f~a~~~G~Y~~Cf~n~~~~~~~~-~~~V~f~i~ 131 (183)
-.|.|.+..+|+.++=|.....|.... .+++.+++.
T Consensus 55 ~~f~f~a~~~G~~~i~~~y~r~we~~~~~~~~~~~V~ 91 (92)
T PF09394_consen 55 RTFTFKALKPGTTTIKFEYRRPWEKGSPIKTFTITVT 91 (92)
T ss_dssp EEEEEEESSSEEEEEEEEEEBTTTBSTTSEEEEEEEE
T ss_pred EEEEEEEecCeeEEEEEEEECcCCCCCccEEEEEEEE
Confidence 478999999999999888776654323 356666654
No 56
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=46.02 E-value=81 Score=20.42 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=31.5
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCCCCCCCccEEEEEEE
Q 030061 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDW 130 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i 130 (183)
.+.+.+.+.. ....- ..+|.|.+.. ..|.|.+-|+.... ..+.+.++.
T Consensus 17 ~a~V~~~~~~---~~~~T-d~~G~F~i~~-~~g~~~l~is~~Gy----~~~~~~i~~ 64 (88)
T PF13715_consen 17 GATVYLKNTK---KGTVT-DENGRFSIKL-PEGDYTLKISYIGY----ETKTITISV 64 (88)
T ss_pred CeEEEEeCCc---ceEEE-CCCeEEEEEE-cCCCeEEEEEEeCE----EEEEEEEEe
Confidence 7777777665 11212 2589999994 58999999987643 445554444
No 57
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=45.27 E-value=1.2e+02 Score=28.38 Aligned_cols=79 Identities=9% Similarity=0.156 Sum_probs=48.9
Q ss_pred eEEEEEcCCCcc------eeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcc
Q 030061 34 AIWLQIPSSGTK------CVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGN 107 (183)
Q Consensus 34 al~f~I~~g~~~------Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~ 107 (183)
.+.|.+.|-.+- |.-..+-.|+.+...-.....+ +... --.+.+.+++|.....+.-.....|++++..+|.
T Consensus 180 ~v~y~Vk~~~~v~I~~F~~lns~~i~~~eI~f~~~a~~~~-g~~~-LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~ 257 (667)
T PRK14081 180 KVKFKVKEIDKVEITDFKCLNKELICDEELVFEVESVYEE-DRTI-LYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGD 257 (667)
T ss_pred EEEEEcccCcceEEEeccccCcceecCcEEEEEEEEEeCC-CceE-EEEEEEECCCCCEEEecCccccceEEEEeCCCcc
Confidence 345555555422 3333333455555553343221 1123 5667777888987777777789999999999999
Q ss_pred eEEEEEe
Q 030061 108 YMACFWL 114 (183)
Q Consensus 108 Y~~Cf~n 114 (183)
|++=...
T Consensus 258 Y~i~~~V 264 (667)
T PRK14081 258 YKLLCLV 264 (667)
T ss_pred EEEEEEE
Confidence 9984443
No 58
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=45.01 E-value=73 Score=22.51 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=31.3
Q ss_pred ceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee
Q 030061 45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE 91 (183)
Q Consensus 45 ~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~ 91 (183)
+=..-++..++.+.+.|+|..+ ++....+.+...|.++.++-.++
T Consensus 37 ~~~gf~vv~d~~v~v~f~Vtr~--~~~~a~C~VrA~~~d~aeVGrre 81 (112)
T PF14155_consen 37 EVIGFEVVDDSTVEVTFDVTRD--PGRPAVCIVRALDYDGAEVGRRE 81 (112)
T ss_pred EEEEEEECCCCEEEEEEEEEEC--CCCCEEEEEEEEeCCCCEEEEEE
Confidence 4455566678899999999843 22212899999999887765543
No 59
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=44.58 E-value=2.1e+02 Score=24.83 Aligned_cols=68 Identities=10% Similarity=0.301 Sum_probs=36.7
Q ss_pred eeEEEEEcCCCcceeeeE--cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc-e--eeEEEEeccCcc
Q 030061 33 EAIWLQIPSSGTKCVSEE--INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT-H--GQFAFTTTEAGN 107 (183)
Q Consensus 33 ~al~f~I~~g~~~Cf~e~--v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~-~--g~f~f~a~~~G~ 107 (183)
..+.++|..+ .|--.. ++.|. ..|.|.+.+ .. ...+.+++. +.++-..++.. . +.+.++. .+|+
T Consensus 30 ~~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~---~~-~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~pGt 98 (375)
T PRK10378 30 PQVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS---QK-ALEWEILKG-VMVVEERENIAPGFSQKMTANL-QPGE 98 (375)
T ss_pred CceEEEEECC--ccccCceeeCCCC---EEEEEEeCC---CC-cceEEeecc-ccccccccccCCCCceEEEEec-CCce
Confidence 4577777765 565444 56674 566665443 12 455555542 22333333432 2 3454333 7999
Q ss_pred eEE-E
Q 030061 108 YMA-C 111 (183)
Q Consensus 108 Y~~-C 111 (183)
|.+ |
T Consensus 99 Y~~~C 103 (375)
T PRK10378 99 YDMTC 103 (375)
T ss_pred EEeec
Confidence 988 9
No 60
>PF05326 SVA: Seminal vesicle autoantigen (SVA); InterPro: IPR007990 This family consists of seminal vesicle autoantigen and prolactin-inducible (PIP) proteins. Seminal vesicle autoantigen (SVA) is specifically present in the seminal plasma of mice. This 19 kDa secretory glycoprotein suppresses the motility of spermatozoa by interacting with phospholipid. PIP has several known functions. In saliva, this protein plays a role in host defence by binding to microorganisms such as Streptococcus. PIP is an aspartyl proteinase and it acts as a factor capable of suppressing T-cell apoptosis through its interaction with CD4 [].; GO: 0005576 extracellular region; PDB: 3ES6_B.
Probab=44.52 E-value=94 Score=22.60 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHHHHHHhhhcccceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeC-CCCCCCCeeEEEEECCCCC-
Q 030061 8 LDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDE-AHPEHPPTVSAKVTSPYGN- 85 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~-~~~~~~~~v~~~V~dp~g~- 85 (183)
+=|+.++.+.|+|||-. . +..+++- ....+..+.++... ..+.+. .+.++|.+--++
T Consensus 5 l~~~~~a~llLvlcLqL-----~--------t~~aQe~-------~~k~l~l~l~~~~~~~~~eev-~v~l~V~t~~~eC 63 (124)
T PF05326_consen 5 LFRASPATLLLVLCLQL-----G--------TNKAQEN-------SRKPLSLNLQVPQTAKANEEV-TVTLTVTTELREC 63 (124)
T ss_dssp --------------------------------------------------EE-----SEE-SS--E-EEEEEEEE--SS-
T ss_pred EeeccHHHHHHHHHHhh-----c--------cchhhcc-------cCccEEEEeecCCCCCCCCEE-EEEEEEEcchhee
Confidence 44677777788888766 1 1122211 23445555555422 111223 555556554333
Q ss_pred eEEe---eecc-ceeeEEEEeccCcceEEEEEeCCCCCCCccEEEEEEEEEcc
Q 030061 86 NLHH---NENV-THGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGF 134 (183)
Q Consensus 86 ~v~~---~~~~-~~g~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i~~g~ 134 (183)
.+.. .... -+|.|.| .|+.|.=+.. +++++.||.+..
T Consensus 64 mvVk~yl~sn~~i~~~fny------~YTaCLC~d~------~r~FyWDi~~~~ 104 (124)
T PF05326_consen 64 MVVKIYLESNPPIDGSFNY------KYTACLCDDY------PRTFYWDIQVNR 104 (124)
T ss_dssp EEEEEEEEESS---SGGG-------EEEEEE-SSS-------EEEEEEE--SS
T ss_pred EEEEEEeccCCCccccccc------eEEEEeCCCC------CccEEEEEEECc
Confidence 1111 1111 1233333 6888998753 578888886643
No 61
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=43.40 E-value=1.6e+02 Score=23.16 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=25.1
Q ss_pred eeEEEEECCCCCeEEe--------eec-cc--eeeEEEEeccCcceEE-EEE
Q 030061 74 TVSAKVTSPYGNNLHH--------NEN-VT--HGQFAFTTTEAGNYMA-CFW 113 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~--------~~~-~~--~g~f~f~a~~~G~Y~~-Cf~ 113 (183)
.|++.+.+. .++++ +.+ .+ ..+..|++.++|.|.. |-.
T Consensus 139 ~v~~~ltS~--DViHsf~vP~l~~k~daiPG~~~~~~~~~~~~G~y~g~Cae 188 (217)
T TIGR01432 139 PVLFKLQSA--DTMTSFWIPQLGGQKYAMTGMTMNWYLQADQVGTYRGRNAN 188 (217)
T ss_pred EEEEEEECC--chhhhhhchhhCceeecCCCceEEEEEEeCCCEEEEEEehh
Confidence 777777764 34443 222 22 5688999999999864 654
No 62
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.22 E-value=53 Score=20.44 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 148 IEGVELHLKRLEAQVQSIHENLLFLK 173 (183)
Q Consensus 148 l~~le~~l~~l~~~l~~I~~eq~y~r 173 (183)
++.|...++.|...++.+..+..-+|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554443
No 63
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=42.98 E-value=1.2e+02 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.9
Q ss_pred ceeeEEEEeccCcceEEEEEeCC
Q 030061 94 THGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 94 ~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
.+|++.+.+...|.|.+-|.|..
T Consensus 86 ~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 86 EEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred CCCcEEEecCCcceEEEEEcCCC
Confidence 58999999999999999999875
No 64
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=42.41 E-value=1.8e+02 Score=23.28 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=24.8
Q ss_pred eeEEEEECCCCCeEEe--------eec-cc--eeeEEEEeccCcceEE-EEE
Q 030061 74 TVSAKVTSPYGNNLHH--------NEN-VT--HGQFAFTTTEAGNYMA-CFW 113 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~--------~~~-~~--~g~f~f~a~~~G~Y~~-Cf~ 113 (183)
.|++.+.+.+ ++++ +.+ .+ ..++.|++.++|.|.. |-.
T Consensus 148 pV~~~ltS~D--ViHSF~VP~l~~K~DaiPG~~n~~~~~~~~~G~y~g~CaE 197 (226)
T TIGR01433 148 PINFKITSNS--VMNSFFIPQLGSQIYAMAGMQTKLHLIANEPGVYDGISAN 197 (226)
T ss_pred EEEEEEEECc--hhhhhhhhhcCCeeecCCCceEEEEEEeCCCEEEEEEchh
Confidence 7777777642 3333 222 22 5688899999999976 765
No 65
>CHL00038 psbL photosystem II protein L
Probab=41.70 E-value=32 Score=19.43 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=17.2
Q ss_pred ehhhhhhHHHHHHHHHHHhhhc
Q 030061 6 ISLDRATVLPLILLLCLACYIC 27 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~ 27 (183)
..+||+-+-.+.||++..|+++
T Consensus 11 VELNRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 11 VELNRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred cchhhhhHHHHHHHHHHHHHHH
Confidence 4689998888888888877643
No 66
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=41.01 E-value=27 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.642 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHhhhc
Q 030061 12 TVLPLILLLCLACYIC 27 (183)
Q Consensus 12 ~~~~~~~~~c~~~~~~ 27 (183)
+++++|||||.++++.
T Consensus 16 ~LIAvvLLLsIl~~lt 31 (66)
T PF13179_consen 16 MLIAVVLLLSILAFLT 31 (66)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777543
No 67
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=40.95 E-value=1.3e+02 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.3
Q ss_pred ceeeEEEEeccCcceEEEEE
Q 030061 94 THGQFAFTTTEAGNYMACFW 113 (183)
Q Consensus 94 ~~g~f~f~a~~~G~Y~~Cf~ 113 (183)
.+|+++|+...+|.|-+=..
T Consensus 191 ~~G~~~~~~~~~G~wli~a~ 210 (215)
T PF10670_consen 191 ANGRATFTLPRPGLWLIRAS 210 (215)
T ss_pred CCCEEEEecCCCEEEEEEEE
Confidence 48888888888888866433
No 68
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=40.65 E-value=29 Score=20.69 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 030061 8 LDRATVLPLILLLCLACY 25 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~~~~ 25 (183)
+|--.++++.++||++.+
T Consensus 5 LRs~L~~~F~~lIC~Fl~ 22 (54)
T PF06716_consen 5 LRSYLLLAFGFLICLFLF 22 (54)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678889999998874
No 69
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=39.88 E-value=2.8e+02 Score=24.92 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=43.6
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee-ccceeeEEEEe----ccCcceEEEEEeCCCCCCC-ccEEEEE
Q 030061 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE-NVTHGQFAFTT----TEAGNYMACFWLGSNPQKV-ADATLGL 128 (183)
Q Consensus 55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~-~~~~g~f~f~a----~~~G~Y~~Cf~n~~~~~~~-~~~~V~f 128 (183)
..+.+.|.+..-+ +. .|.++|+|.+|+.+.... ....+..+++. -+.|.|++=.....+.... ....++|
T Consensus 327 G~~~i~ftv~a~g---~~-~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~dG~~~~q~~~~~ 402 (478)
T PRK13211 327 GAATLDFTVTATG---DM-NVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKDGELIKQQTLDF 402 (478)
T ss_pred CcEEEEEEEEecc---ce-EEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeCCCceeeeeeEEE
Confidence 3455555555322 23 999999999999876642 22334445544 4689999988876542211 2455555
Q ss_pred EE
Q 030061 129 DW 130 (183)
Q Consensus 129 ~i 130 (183)
.+
T Consensus 403 ~v 404 (478)
T PRK13211 403 ML 404 (478)
T ss_pred EE
Confidence 55
No 70
>PRK10301 hypothetical protein; Provisional
Probab=39.78 E-value=1.4e+02 Score=21.41 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=34.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec---cc-eeeEEEEec---cCcceEEEEEeCCC
Q 030061 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN---VT-HGQFAFTTT---EAGNYMACFWLGSN 117 (183)
Q Consensus 54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~---~~-~g~f~f~a~---~~G~Y~~Cf~n~~~ 117 (183)
-+.|.+.|.-. . ... ...+.+.|++|+.+..... .. ...+..... ..|.|++=-..-..
T Consensus 45 P~~V~L~F~e~---v-~~~-~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~ 110 (124)
T PRK10301 45 PQALTLNFSEG---I-EPG-FSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSV 110 (124)
T ss_pred CCEEEEEcCCC---c-ccc-ccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEEEEEEEec
Confidence 46677777322 1 112 5678889999987754321 11 234555543 47999987665543
No 71
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=39.35 E-value=27 Score=22.30 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHh
Q 030061 11 ATVLPLILLLCLAC 24 (183)
Q Consensus 11 ~~~~~~~~~~c~~~ 24 (183)
+++|++++|+||.-
T Consensus 6 SIvLai~lLI~l~~ 19 (66)
T PF07438_consen 6 SIVLAIALLISLSV 19 (66)
T ss_pred HHHHHHHHHHHHhh
Confidence 56666666666654
No 72
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=38.41 E-value=1e+02 Score=19.35 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=28.8
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 143 AKKDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175 (183)
Q Consensus 143 a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~R 175 (183)
|-.+.++-+..+|..|.++...+..|-.++|..
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556889999999999999999999999998864
No 73
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=37.84 E-value=18 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=18.3
Q ss_pred eehhhhhhHHHHHHHHHHHhhhcc
Q 030061 5 LISLDRATVLPLILLLCLACYICV 28 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~c~~~~~~~ 28 (183)
-+.+.|-+.+++|++||++..++.
T Consensus 22 ~~~~eqkt~faFV~~L~~fL~~li 45 (81)
T PF11057_consen 22 SLDLEQKTAFAFVGLLCLFLGLLI 45 (81)
T ss_pred ccccccceeehHHHHHHHHHHHHH
Confidence 356778888999999998875443
No 74
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.72 E-value=90 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHHHhhhcccce
Q 030061 9 DRATVLPLILLLCLACYICVVPV 31 (183)
Q Consensus 9 ~~~~~~~~~~~~c~~~~~~~~~~ 31 (183)
|...+.|+++.+|+.+++.-...
T Consensus 5 Rw~~~ILll~a~~~~~w~~~~~~ 27 (188)
T COG3117 5 RWVYLILLLAALALSGWLLGLEQ 27 (188)
T ss_pred hHHHHHHHHHHHHHHHHhhhccc
Confidence 33336777777788876444333
No 75
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=35.57 E-value=50 Score=26.27 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=26.9
Q ss_pred eeEEEEECCCCCeEEeeecc---ce-eeEEE--EeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGNNLHHNENV---TH-GQFAF--TTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~---~~-g~f~f--~a~~~G~Y~~Cf~n~~ 116 (183)
.+++.|+|.+|+.+...... .. +.|.. ..-..|.|+++.....
T Consensus 30 ~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n~ 78 (283)
T PF08842_consen 30 RVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGNL 78 (283)
T ss_dssp EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES-
T ss_pred EEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEECC
Confidence 99999999999965543221 13 45554 3356799999877653
No 76
>PLN00115 pollen allergen group 3; Provisional
Probab=35.08 E-value=61 Score=23.32 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhhhcccceeeeEEEEEcCCC
Q 030061 11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSG 43 (183)
Q Consensus 11 ~~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~ 43 (183)
.-+|+++.|..|+++ -.....++|+|..|.
T Consensus 5 ~~~~~~~~~a~l~~~---~~~g~~v~F~V~~gS 34 (118)
T PLN00115 5 SFLLLAVALAALFAV---GSCATEVTFKVGKGS 34 (118)
T ss_pred HHHHHHHHHHHHhhh---hhcCCceEEEECCCC
Confidence 347777777777773 233568999999887
No 77
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=35.03 E-value=70 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=19.7
Q ss_pred ccCcceEEEEEeCCCCCCCccEEEEEEEEE
Q 030061 103 TEAGNYMACFWLGSNPQKVADATLGLDWRI 132 (183)
Q Consensus 103 ~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i~~ 132 (183)
.+.|.|.|=..|.. ....+.|++.+
T Consensus 75 ~E~G~YTf~a~N~~-----~~~s~tF~l~v 99 (101)
T cd05860 75 TEGGTYTFLVSNSD-----ASASVTFNVYV 99 (101)
T ss_pred hhCcEEEEEEECCC-----CeEEEEEEEEE
Confidence 56899999999886 46778887764
No 78
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=35.02 E-value=84 Score=19.57 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=24.1
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
+..+...+.+|..+-..+..-.| .|.+..+|.|.+=+.-..
T Consensus 18 ~~~v~at~~dG~~~~~~~~~vs~--~~d~~~~G~y~Vt~~y~~ 58 (67)
T PF07523_consen 18 GLFVTATYSDGTSLPLSDVTVSG--TVDTSKAGTYTVTYTYKG 58 (67)
T ss_dssp CHEEEEEETTS-ES-GCCSEEES-----TTS-CCEEEEEEECT
T ss_pred CCEEEEEEcCCCEeceeeeEEEe--eeecCCCceEEEEEEECC
Confidence 66778888888874333322244 788889999999888653
No 79
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=34.64 E-value=1.7e+02 Score=20.88 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=33.1
Q ss_pred EEEEEEEEeeCCCCC-CCCeeEEEEECCCCCeEEeee-c-cceeeEEEEeccCcce-EEEEEeC
Q 030061 56 VVLADYYVIDEAHPE-HPPTVSAKVTSPYGNNLHHNE-N-VTHGQFAFTTTEAGNY-MACFWLG 115 (183)
Q Consensus 56 ~v~~~y~v~~~~~~~-~~~~v~~~V~dp~g~~v~~~~-~-~~~g~f~f~a~~~G~Y-~~Cf~n~ 115 (183)
++.++|.|..+-.+. .. .+++.|..|.+++.-.-. . ..+--..|.+.-.|.| .+|+.+.
T Consensus 3 LF~v~y~i~~~~~Gap~L-~L~L~V~~~~~~VsG~a~ItQat~ppl~~~s~v~G~~~~~~~~~~ 65 (114)
T PF08896_consen 3 LFPVSYRIGTGLPGAPVL-TLDLLVNTPDKSVSGRARITQATNPPLNFHSDVWGQYSYMGLMPP 65 (114)
T ss_pred eeEEEEEecCCCCCCcEE-EEEEEEeCCCCEEEeEEEEEEecCCCcceEEEeEEeEEEEEecCC
Confidence 577889995432111 23 788888888876632211 1 1123355666667766 4477533
No 80
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=33.08 E-value=87 Score=21.24 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHhccC
Q 030061 148 IEGVELHLKRLEAQVQSIHENLLFLK---HRSSLFL 180 (183)
Q Consensus 148 l~~le~~l~~l~~~l~~I~~eq~y~r---~RE~r~r 180 (183)
+...+.++.+....++.+.+.+.++. .+++.||
T Consensus 10 ~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHR 45 (86)
T PF12958_consen 10 IEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHR 45 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777775 4444443
No 81
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=32.82 E-value=46 Score=17.97 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhh
Q 030061 14 LPLILLLCLACYI 26 (183)
Q Consensus 14 ~~~~~~~c~~~~~ 26 (183)
.+.+++.|+++++
T Consensus 7 ilG~~lA~~~~v~ 19 (30)
T TIGR02106 7 ILGTLLACAFGVL 19 (30)
T ss_pred HHHHHHHHHHHHH
Confidence 5778888888854
No 82
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=32.59 E-value=40 Score=21.06 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.1
Q ss_pred hhhhccChhhHHHHHHHHHHHHH
Q 030061 141 SVAKKDKIEGVELHLKRLEAQVQ 163 (183)
Q Consensus 141 ~~a~~~~l~~le~~l~~l~~~l~ 163 (183)
+.+++.+..+++.++.++-+.++
T Consensus 34 s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 34 SNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred ccccccchhHHHHHHHHHHHHHc
Confidence 34677888899999998887764
No 83
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=32.02 E-value=1.5e+02 Score=19.52 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=9.0
Q ss_pred ceeeeEcCCCcEEEEEEEE
Q 030061 45 KCVSEEINSNVVVLADYYV 63 (183)
Q Consensus 45 ~Cf~e~v~~~~~v~~~y~v 63 (183)
......|+.|+.+...+.+
T Consensus 47 ~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 47 GPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEECCCCEEEEEEee
Confidence 3444444445544444444
No 84
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=32.01 E-value=90 Score=22.26 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=24.0
Q ss_pred eEEEEECCCCCeEEee-----eccceeeEEEEec-cCcc--eEEEEEeCC
Q 030061 75 VSAKVTSPYGNNLHHN-----ENVTHGQFAFTTT-EAGN--YMACFWLGS 116 (183)
Q Consensus 75 v~~~V~dp~g~~v~~~-----~~~~~g~f~f~a~-~~G~--Y~~Cf~n~~ 116 (183)
-++.+...+|+++... .+..+..|++... ..|+ |.|||.-.+
T Consensus 24 ~dl~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eN 73 (112)
T PF09116_consen 24 PDLCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMEN 73 (112)
T ss_dssp -EEEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG
T ss_pred CeEEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEece
Confidence 3455666667776554 2334678888773 3455 888888654
No 85
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=31.69 E-value=51 Score=19.52 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 148 IEGVELHLKRLEAQVQSIHENLLFLK 173 (183)
Q Consensus 148 l~~le~~l~~l~~~l~~I~~eq~y~r 173 (183)
+..+...+..|.+.++.-..|..|+|
T Consensus 10 l~~l~~~l~elk~~l~~Q~kE~~~LR 35 (45)
T PF11598_consen 10 LSELNQMLQELKELLRQQIKETRFLR 35 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444544
No 86
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=31.51 E-value=25 Score=26.45 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHhhhcccc--eeeeEEEEEcC
Q 030061 10 RATVLPLILLLCLACYICVVP--VTEAIWLQIPS 41 (183)
Q Consensus 10 ~~~~~~~~~~~c~~~~~~~~~--~~~al~f~I~~ 41 (183)
..+.|+++||||-+. |... .-....|.+|.
T Consensus 14 igi~Ll~lLl~cgiG--cvwhwkhr~~~~ftLPk 45 (158)
T PF11770_consen 14 IGISLLLLLLLCGIG--CVWHWKHRDSTRFTLPK 45 (158)
T ss_pred HHHHHHHHHHHHhcc--eEEEeeccCccccchHH
Confidence 345666677777665 3332 23456677764
No 87
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=30.50 E-value=18 Score=15.28 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=5.4
Q ss_pred CCcceeee
Q 030061 42 SGTKCVSE 49 (183)
Q Consensus 42 g~~~Cf~e 49 (183)
+..+|||-
T Consensus 2 ~~~~CFWK 9 (12)
T PF02083_consen 2 GKSECFWK 9 (12)
T ss_pred Cccchhhh
Confidence 45688874
No 88
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=30.45 E-value=1.6e+02 Score=19.65 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=18.8
Q ss_pred eeEEEEECCCCCeEEeeec------cceeeEE----EEe-ccCcceEEEEEe
Q 030061 74 TVSAKVTSPYGNNLHHNEN------VTHGQFA----FTT-TEAGNYMACFWL 114 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~------~~~g~f~----f~a-~~~G~Y~~Cf~n 114 (183)
...+.|.|..|+.+++-.- ...+... |+. .++|+|.+....
T Consensus 35 ~~~f~l~d~~~~~V~~g~~~~~~~~~~s~~~~~~~DFS~~~~~G~Y~i~~~~ 86 (91)
T PF02927_consen 35 PSTFELVDASGGKVYTGKLSPAGVDPWSGEYVYRIDFSDLTTPGTYYIRVGG 86 (91)
T ss_dssp --EEEEEETTSBEEEEEEEEEEEECTTTTEEEEEEE-TT--S-EEEEEEETT
T ss_pred eeEEEEEcCCCCEEEEEEeeCccccCCCCCeEEEEEcCCcCCCEEEEEEECC
Confidence 3466677766665554211 1122222 333 567888887654
No 89
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=30.00 E-value=88 Score=23.81 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=27.4
Q ss_pred EEEEeeCC----CCCCCCeeEEEEECCCCCeEEeeecc--ceeeEEEEec
Q 030061 60 DYYVIDEA----HPEHPPTVSAKVTSPYGNNLHHNENV--THGQFAFTTT 103 (183)
Q Consensus 60 ~y~v~~~~----~~~~~~~v~~~V~dp~g~~v~~~~~~--~~g~f~f~a~ 103 (183)
.|.+.+|. ...+.|.-+++||||+|+.+++-.+. ..|+......
T Consensus 72 ~fdvsegpvri~a~~nvpyWSvsiyds~~nn~fS~ND~ta~~gkLDlVva 121 (182)
T COG5436 72 RFDVSEGPVRIEAKGNVPYWSVSIYDSNGNNFFSINDRTAKGGKLDLVVA 121 (182)
T ss_pred EeeccCCcEEEEecCCCceEEEEEEcCCCCceEEeccccccCCccceEEe
Confidence 45555442 12245688999999999999885332 2455555443
No 90
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=29.19 E-value=1.6e+02 Score=18.91 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=17.3
Q ss_pred eccCcceEEEEEeCCCCCCCccEEEEEEEEEccccccchhh
Q 030061 102 TTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESV 142 (183)
Q Consensus 102 a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~ 142 (183)
+...+.-+|.|.|-... ...+..+|.+.++. ..|.-.
T Consensus 3 ~~~~d~lkf~F~~id~~--d~~re~s~~l~i~~--~~Y~v~ 39 (74)
T PF08234_consen 3 AIGGDQLKFVFTNIDPN--DPDREFSFTLDISS--DKYEVI 39 (74)
T ss_dssp --STT-EEEEE-S-BTT--BSSS-EEEEEE-SS--S-EE--
T ss_pred ccCCceEEEEEeEcCCC--CCCceEEEEEEECC--CeEEEE
Confidence 34455678888886542 24577888887765 345533
No 91
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=29.08 E-value=33 Score=26.56 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=7.9
Q ss_pred eeEEEEECCCCCeEE
Q 030061 74 TVSAKVTSPYGNNLH 88 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~ 88 (183)
.-+++++|++|++|.
T Consensus 162 ~gr~r~kd~~g~~~~ 176 (179)
T PF07202_consen 162 SGRVRIKDKDGNVIM 176 (179)
T ss_pred CCcEEEecCCCCEEe
Confidence 444555555555544
No 92
>COG5510 Predicted small secreted protein [Function unknown]
Probab=29.00 E-value=68 Score=18.86 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=10.6
Q ss_pred hhhhhHHHHHHHHHHHh
Q 030061 8 LDRATVLPLILLLCLAC 24 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~~~ 24 (183)
|.+++.+..++++|.+.
T Consensus 2 mk~t~l~i~~vll~s~l 18 (44)
T COG5510 2 MKKTILLIALVLLASTL 18 (44)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 56666666666666554
No 93
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.90 E-value=2.7e+02 Score=21.38 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=46.9
Q ss_pred HHHHhhhcccceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEE
Q 030061 20 LCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFA 99 (183)
Q Consensus 20 ~c~~~~~~~~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~ 99 (183)
||-+..+|+......-+..+.+++ .+.|+......+|..|- |..+.-.++|.=|.|-+..+.+- .--+.
T Consensus 8 l~~~~~~~~~~~~AsAH~s~~~~e-------a~~gs~~~atlrVPhgc--dgkaTtkV~vklPeGvi~~kp~P--kpGW~ 76 (178)
T COG4549 8 LCALFALSLSTFTASAHVSLETGE-------AAAGSTYKATLRVPHGC--DGKATTKVRVKLPEGVIFAKPQP--KPGWT 76 (178)
T ss_pred HHHHHHHHhccccceEEEEecccc-------ccCCceEEEEEecCCCC--CCCcceEEEEeCCCceeeecccC--CCCcE
Confidence 343333344344445566666643 67788899999998654 22236667778888854443332 22233
Q ss_pred EEeccCcceEEEEEeCCC
Q 030061 100 FTTTEAGNYMACFWLGSN 117 (183)
Q Consensus 100 f~a~~~G~Y~~Cf~n~~~ 117 (183)
..+.. |.|+.-..|..+
T Consensus 77 le~~K-g~y~~ty~~hG~ 93 (178)
T COG4549 77 LETIK-GDYEKTYQNHGS 93 (178)
T ss_pred EEEee-cceeeeeeccCC
Confidence 33322 555555555443
No 94
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=28.73 E-value=1.1e+02 Score=20.63 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=30.8
Q ss_pred eeEEEEECCCCCeEEeeecc---ceeeEEEEecc---CcceEEEEEeCCCCCCCccEEEEEEE
Q 030061 74 TVSAKVTSPYGNNLHHNENV---THGQFAFTTTE---AGNYMACFWLGSNPQKVADATLGLDW 130 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~---~~g~f~f~a~~---~G~Y~~Cf~n~~~~~~~~~~~V~f~i 130 (183)
.-.+.|+|++|+.+-..... ....+...... .|.|.+=...-....-...-.+.|.+
T Consensus 34 ~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~~G~~~F~V 96 (97)
T PF04234_consen 34 FSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADGHPVSGSFSFTV 96 (97)
T ss_dssp C-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEecCCCCcCCEEEEEE
Confidence 67788889888765332111 12355555544 78998877765432112334444443
No 95
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=28.50 E-value=4e+02 Score=23.20 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=30.8
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEe---ccCcceEEEEEeCCCCCCCccEEEEEEE
Q 030061 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTT---TEAGNYMACFWLGSNPQKVADATLGLDW 130 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a---~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i 130 (183)
.+.+.+..|+|..........++...+.. .+.|.|++=.+--.+ +...+.+.|.+
T Consensus 243 ~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~T--t~~GRe~~~~l 300 (374)
T TIGR03503 243 VIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFGT--TITGRELQLTL 300 (374)
T ss_pred EEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEEe--cCCCCEEEEEc
Confidence 78888889999744333333344444433 457899875553322 11345555544
No 96
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=28.33 E-value=2.4e+02 Score=20.69 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=29.5
Q ss_pred eeEEEEECCCCCeEEeeecc---------ceeeEEEEeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGNNLHHNENV---------THGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~---------~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
-+.+.++|++|+++..+... -+++|.-. -.+|.|.++.--..
T Consensus 48 l~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv~~-~~~g~~gl~vpLGa 98 (133)
T PF07680_consen 48 LIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYVAK-VKPGKHGLVVPLGA 98 (133)
T ss_pred eeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEEcc-ccCCceeEEEEcCC
Confidence 88899999999998875433 14555422 34788888887554
No 97
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=28.20 E-value=33 Score=22.59 Aligned_cols=14 Identities=50% Similarity=1.094 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhh
Q 030061 12 TVLPLILLLCLACY 25 (183)
Q Consensus 12 ~~~~~~~~~c~~~~ 25 (183)
++.+++|+||...+
T Consensus 34 VviPl~L~LCiLvl 47 (74)
T PF11857_consen 34 VVIPLVLLLCILVL 47 (74)
T ss_pred EeHHHHHHHHHHHH
Confidence 46788888888774
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.82 E-value=41 Score=23.54 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=15.4
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 030061 143 AKKDKIEGVELHLKRLEAQVQSIHENLLFL 172 (183)
Q Consensus 143 a~~~~l~~le~~l~~l~~~l~~I~~eq~y~ 172 (183)
|+++.++.+...+.+...+++.+..+.+.+
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555555555555555555444443
No 99
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=27.76 E-value=63 Score=17.12 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhh
Q 030061 13 VLPLILLLCLACYI 26 (183)
Q Consensus 13 ~~~~~~~~c~~~~~ 26 (183)
-.+.++|.|+++++
T Consensus 6 WilG~~lA~~~~i~ 19 (28)
T PF08173_consen 6 WILGVLLACAFGIL 19 (28)
T ss_pred HHHHHHHHHHHHHH
Confidence 35678888888754
No 100
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=27.60 E-value=42 Score=18.86 Aligned_cols=8 Identities=50% Similarity=1.248 Sum_probs=5.7
Q ss_pred HHHHHHHh
Q 030061 17 ILLLCLAC 24 (183)
Q Consensus 17 ~~~~c~~~ 24 (183)
.+++|||+
T Consensus 5 l~l~CLA~ 12 (37)
T PF11131_consen 5 LFLICLAA 12 (37)
T ss_pred HHHHHHHH
Confidence 36778877
No 101
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=27.54 E-value=2.5e+02 Score=21.69 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.5
Q ss_pred eeeEEEEeccCcceEE-EEE
Q 030061 95 HGQFAFTTTEAGNYMA-CFW 113 (183)
Q Consensus 95 ~g~f~f~a~~~G~Y~~-Cf~ 113 (183)
.....|++.++|+|.. |-.
T Consensus 156 ~~~~~~~~~~~G~y~~~c~e 175 (201)
T TIGR02866 156 YNALWFNADEPGVYYGYCAE 175 (201)
T ss_pred EEEEEEEeCCCEEEEEEehh
Confidence 5678899999999975 765
No 102
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.37 E-value=53 Score=29.50 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=17.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 147 KIEGVELHLKRLEAQVQSIHENLLFLKHR 175 (183)
Q Consensus 147 ~l~~le~~l~~l~~~l~~I~~eq~y~r~R 175 (183)
.++.++ +|++|+.+|++++++|..+..|
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccc
Confidence 344444 6667777777777776655544
No 103
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.32 E-value=90 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=9.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q 030061 147 KIEGVELHLKRLEAQVQSIHE 167 (183)
Q Consensus 147 ~l~~le~~l~~l~~~l~~I~~ 167 (183)
++..+-.++..|...+..+..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~E 36 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLE 36 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 104
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=26.98 E-value=85 Score=16.63 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHh
Q 030061 7 SLDRATVLPLILLLCLAC 24 (183)
Q Consensus 7 ~~~~~~~~~~~~~~c~~~ 24 (183)
-+|-+++|.-++|+||..
T Consensus 9 ~lnftvvlitvilmwllv 26 (31)
T PF05366_consen 9 FLNFTVVLITVILMWLLV 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 467788888899998865
No 105
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=26.90 E-value=54 Score=22.88 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.6
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHH
Q 030061 146 DKIEGVELHLKRLEAQVQSIHENL 169 (183)
Q Consensus 146 ~~l~~le~~l~~l~~~l~~I~~eq 169 (183)
-.++|+++++++|+..++++.+.+
T Consensus 31 ldv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 31 LDVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred EeccHHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999988877654
No 106
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=26.69 E-value=1.4e+02 Score=22.85 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=17.2
Q ss_pred eeEEEEEcCCCcceeeeE------cCCCcEEEEE
Q 030061 33 EAIWLQIPSSGTKCVSEE------INSNVVVLAD 60 (183)
Q Consensus 33 ~al~f~I~~g~~~Cf~e~------v~~~~~v~~~ 60 (183)
.++.+.+.++.+.=+|-- +..|+.|...
T Consensus 27 ~~~~~N~T~S~pig~y~~~~~~~~~~rGDiVvf~ 60 (176)
T PRK13838 27 GGYRINLTPSEPLGLWRIEALDRPVAVGDLVFIC 60 (176)
T ss_pred CceEEECCCCCEEEEEEEeccCCCCCCCcEEEEE
Confidence 677888887765544432 3456666654
No 107
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.47 E-value=1.6e+02 Score=23.21 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=51.1
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccce--eeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCC
Q 030061 7 SLDRATVLPLILLLCLACYICVVPV--TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYG 84 (183)
Q Consensus 7 ~~~~~~~~~~~~~~c~~~~~~~~~~--~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g 84 (183)
+|.-+++|+.+|++-.+++...+.. -.++.=.+..|.+-=..-++.+|....+.+.+..|. +. .|-=...+..|
T Consensus 3 ~~~~~~vll~~L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg~~~vd~~I~gP~---~~-~i~~~~~~ssg 78 (201)
T KOG1692|consen 3 SLASVIVLLGLLFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGGFLGVDVEITGPD---GK-IIHKGKRESSG 78 (201)
T ss_pred chhhHHHHHHHHHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCCccceeEEEECCC---Cc-hhhhcccccCc
Confidence 4566677777777765554433322 356666677777777777777777778888887443 22 33323345556
Q ss_pred CeEEeeeccceeeEEE
Q 030061 85 NNLHHNENVTHGQFAF 100 (183)
Q Consensus 85 ~~v~~~~~~~~g~f~f 100 (183)
+-=+...+ +|.|.|
T Consensus 79 k~tF~a~~--~G~Y~f 92 (201)
T KOG1692|consen 79 KYTFTAPK--KGTYTF 92 (201)
T ss_pred eEEEEecC--CceEEE
Confidence 55444433 454444
No 108
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=26.22 E-value=64 Score=21.61 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHhhhcccceeee
Q 030061 8 LDRATVLPLILLLCLACYICVVPVTEA 34 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~~~~~~~~~~~~a 34 (183)
||+..+.++++++.+++...+..++++
T Consensus 1 MR~~~~aa~a~~~~~~~~~~~~~pA~A 27 (82)
T PF12071_consen 1 MRRLLLAALALLLAAALLALAAAPAQA 27 (82)
T ss_pred ChhHHHHHHHHHHHHHHHhccccchhh
Confidence 566677777764444443334444444
No 109
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=26.21 E-value=5e+02 Score=25.86 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.5
Q ss_pred eeEEEEECCCCCeE---EeeeccceeeEEEEeccCcceEEEEEeCCC
Q 030061 74 TVSAKVTSPYGNNL---HHNENVTHGQFAFTTTEAGNYMACFWLGSN 117 (183)
Q Consensus 74 ~v~~~V~dp~g~~v---~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~~ 117 (183)
.+.+.|.||.|+.. .....-.+-.++|+..+.|+|++=+.-...
T Consensus 694 ~ltaeI~~PsGn~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~ 740 (1113)
T KOG0518|consen 694 VLTAEIVDPSGNPEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGK 740 (1113)
T ss_pred eeEEEEECCCCCccceeeEecCCCceeEEECCCcCcceEEEEEEcce
Confidence 78889999999875 223222345899999999999998886543
No 110
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=26.02 E-value=29 Score=26.64 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=24.8
Q ss_pred EEEEECCCCCeEEeeeccceeeEEEEe---ccCcceEEEEEeCC
Q 030061 76 SAKVTSPYGNNLHHNENVTHGQFAFTT---TEAGNYMACFWLGS 116 (183)
Q Consensus 76 ~~~V~dp~g~~v~~~~~~~~g~f~f~a---~~~G~Y~~Cf~n~~ 116 (183)
-+.|||.+|+.+|++.+.++-.=.... +++|-|++=-+...
T Consensus 76 L~~IYD~~G~lLW~qr~vP~l~~~I~~~WL~k~gf~Eidtd~~~ 119 (180)
T PF08918_consen 76 LVLIYDENGKLLWRQRDVPELEKRIQPEWLKKNGFYEIDTDVDT 119 (180)
T ss_dssp EEEEEETTS-EEEESS--HHHHCCS-GGGGGSSEEEEEEEEHHH
T ss_pred EEEEEcCCCcEEEecCccHHHHHhcCHHHccCCCceEEecCcch
Confidence 447999999999998887643222222 56777777666543
No 111
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.76 E-value=1.5e+02 Score=17.54 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=19.4
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 145 KDKIEGVELHLKRLEAQVQSIHENLLFLK 173 (183)
Q Consensus 145 ~~~l~~le~~l~~l~~~l~~I~~eq~y~r 173 (183)
.++-+.+|.++..|...+.++..-..-+-
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999998888776544443
No 112
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=3.2e+02 Score=21.11 Aligned_cols=60 Identities=8% Similarity=0.171 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhhcccceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEEC
Q 030061 12 TVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTS 81 (183)
Q Consensus 12 ~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~d 81 (183)
+.+++++|-|+++ ..+.+=-+-|.... -.--..-++..+.++|++.+-|. .|..++++.|
T Consensus 6 l~s~fvVlslvaa-----~~at~~a~ll~kk~--~lnry~v~~rd~~leY~IyNvGs---spAldVtLsD 65 (188)
T KOG3317|consen 6 LISAFVVLSLVAA-----SFATSEAMLLAKKA--TLNRYAVEARDVSLEYDIYNVGS---SPALDVTLSD 65 (188)
T ss_pred HHHHHHHHHHHHh-----hhcccceEEEeecc--chhhccccceeeEEEEeeEEcCC---CcceeEEecC
Confidence 4556777777777 22222223333221 11122334677888998875332 1244444444
No 113
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=25.17 E-value=1.9e+02 Score=18.46 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=28.8
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCC
Q 030061 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~ 116 (183)
.+=+.|+|.+|+.+++....+...+.| .....+++=+-|..
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~ 48 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAG 48 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCC
Confidence 677889999999999876655556666 34445666666553
No 114
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.86 E-value=4.7e+02 Score=22.87 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=33.5
Q ss_pred CcEEEEEEEEeeCCCC-CCCCeeEEEEECCCCCeEEeeeccceeeEEEEe----ccCcceEEEEEe
Q 030061 54 NVVVLADYYVIDEAHP-EHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTT----TEAGNYMACFWL 114 (183)
Q Consensus 54 ~~~v~~~y~v~~~~~~-~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a----~~~G~Y~~Cf~n 114 (183)
+-.+.+.|.-..-..+ -.+ .+.+++.+|++..+..+...+ |...| ...|.|+.=+.-
T Consensus 51 dvpvdvlYD~~~y~isg~~e-tV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~v 112 (403)
T COG4856 51 DVPVDVLYDSDKYFISGQPE-TVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQV 112 (403)
T ss_pred eceeEEEEccccccccCCce-EEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeEe
Confidence 3445666654321111 123 999999999998877765433 55544 446777665543
No 115
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.68 E-value=89 Score=18.96 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHhhhcccc
Q 030061 10 RATVLPLILLLCLACYICVVP 30 (183)
Q Consensus 10 ~~~~~~~~~~~c~~~~~~~~~ 30 (183)
|.+-|.++.+||.+.++.+++
T Consensus 15 rigGLi~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred hccchHHHHHHHHHHHHHHHc
Confidence 455567777778777665543
No 116
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=24.53 E-value=1.4e+02 Score=23.19 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.4
Q ss_pred ECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCCCCCCCccEEEEEEEEEccccccchhhhh
Q 030061 80 TSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAK 144 (183)
Q Consensus 80 ~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~a~ 144 (183)
++++|+..+.. ...+.|+..++|.|-.|.-... ..|.+|++.-....+|..+++
T Consensus 45 ~~~~GKP~l~~----~~~~~fSISHSg~~va~a~s~~-------~~VGIDIE~i~~~~~~~~la~ 98 (187)
T PRK10351 45 YGEQGKPAFAP----ETPLWFNLSHSGDDIALLLSDE-------GEVGCDIEVIRPRANWRSLAN 98 (187)
T ss_pred cCcCCCccccC----CCCCeEEEecccCcEEEEEEcC-------CCeEEEEEEecCccCHHHHHH
Confidence 57788877642 2346789889999999976442 245566665333345555554
No 117
>PRK09738 small toxic polypeptide; Provisional
Probab=24.50 E-value=75 Score=19.44 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHhhhcc
Q 030061 8 LDRATVLPLILLLCLACYICV 28 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~~~~~~~ 28 (183)
|.+-..+..++.+|++.+.+.
T Consensus 3 mp~~~~~~~livvCiTvL~f~ 23 (52)
T PRK09738 3 LPRSPLVWCVLIVCLTLLIFT 23 (52)
T ss_pred CccceehhhHHHHHHHHHHHH
Confidence 345566777888999886554
No 118
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.48 E-value=1.1e+02 Score=25.55 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=25.2
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 146 DKIEGVELHLKRLEAQVQSIHENLLFLKH 174 (183)
Q Consensus 146 ~~l~~le~~l~~l~~~l~~I~~eq~y~r~ 174 (183)
..+..++.+=++|.+++..+.+|+.|+|.
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999985
No 119
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.41 E-value=2.9e+02 Score=20.19 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=32.4
Q ss_pred eeEEEEECCCCCeEEeeecc-cee---eEEEEe---ccCcceEEEEEeCCCCCCCccEEEEEEE
Q 030061 74 TVSAKVTSPYGNNLHHNENV-THG---QFAFTT---TEAGNYMACFWLGSNPQKVADATLGLDW 130 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~~-~~g---~f~f~a---~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i 130 (183)
.-.+.+++|+|..+...... .++ ...... -..|.|.+=..--++..-..+-.+.|++
T Consensus 61 fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV 124 (127)
T COG2372 61 FSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSISFSV 124 (127)
T ss_pred cceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEecCCcEeccEEEEEe
Confidence 57788999999887653221 122 133333 3478898877665442112345566655
No 120
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=24.27 E-value=2.3e+02 Score=19.82 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=28.7
Q ss_pred EEEccccccchhhhhccChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 030061 130 WRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQ-SIHENLLFLKHRSS 177 (183)
Q Consensus 130 i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~-~I~~eq~y~r~RE~ 177 (183)
+..|..+.|...-++...|..|...|..|.+.++ -+.+.|+.-+.|+.
T Consensus 38 l~ag~~d~d~~s~~K~t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~ 86 (103)
T PF08738_consen 38 LNAGQEDRDKPSEDKDTYLSELRAQLTTLQDDINEFLTERMEEDKARDA 86 (103)
T ss_pred ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556555554444566667777777777777776 34444555555543
No 121
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.16 E-value=1.8e+02 Score=20.50 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030061 148 IEGVELHLKRLEAQVQSIHENLLFLKHRSSLFL 180 (183)
Q Consensus 148 l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r 180 (183)
+.+++.++.+|...+..++.|.++++.--.-+|
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777777777777776554444
No 122
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=24.03 E-value=1.1e+02 Score=24.20 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061 148 IEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP 182 (183)
Q Consensus 148 l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~ 182 (183)
-..|+.+|+++-.....---.+.|+..|-..||+|
T Consensus 128 s~eL~~KI~k~y~~k~k~~mdmnrliq~~keFRNP 162 (238)
T KOG2959|consen 128 STELEKKIKKFYKLKAKGIMDMNRLIQDNKEFRNP 162 (238)
T ss_pred cHHHHHHHHHHHHHHhhcchhHHHHHhhhhhccCc
Confidence 45789999999988888888899999999999987
No 123
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.01 E-value=1.1e+02 Score=21.63 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 030061 148 IEGVELHLKRLEAQVQSIHE 167 (183)
Q Consensus 148 l~~le~~l~~l~~~l~~I~~ 167 (183)
+..++..+..+...+..+++
T Consensus 10 l~~le~~l~~l~~el~~LK~ 29 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKK 29 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 124
>PRK15396 murein lipoprotein; Provisional
Probab=23.95 E-value=1.8e+02 Score=19.34 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=21.1
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 143 AKKDKIEGVELHLKRLEAQVQSIHENLLFLKH 174 (183)
Q Consensus 143 a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~ 174 (183)
|...+++.|..+++.|...++.+..+..-+|.
T Consensus 22 As~~kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777766665553
No 125
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.93 E-value=1.1e+02 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 150 GVELHLKRLEAQVQSIHENLLFLKHRS 176 (183)
Q Consensus 150 ~le~~l~~l~~~l~~I~~eq~y~r~RE 176 (183)
.+|.+|.++...++.++..+.|+..|-
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 557777777777777777777777664
No 126
>PHA02665 hypothetical protein; Provisional
Probab=23.79 E-value=56 Score=26.22 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.5
Q ss_pred EcCCCcceeeeEcCCCcEEEEEEEEeeCCC
Q 030061 39 IPSSGTKCVSEEINSNVVVLADYYVIDEAH 68 (183)
Q Consensus 39 I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~ 68 (183)
..|+++||.+-.+..+....-.|.|.+|+.
T Consensus 25 ~ep~kkkc~ftkirt~~s~a~ry~vsdg~l 54 (322)
T PHA02665 25 FEPGKKKCVFTKIRTSSSLACRYAVSDGGL 54 (322)
T ss_pred cccccceeEEEEEecchhhhheeeeccCcc
Confidence 478999999999999999999999998863
No 127
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=23.71 E-value=80 Score=17.58 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhccc
Q 030061 13 VLPLILLLCLACYICVV 29 (183)
Q Consensus 13 ~~~~~~~~c~~~~~~~~ 29 (183)
-++.++|.|-++++-++
T Consensus 6 WiLG~lLAcAFgiinAl 22 (37)
T COG4890 6 WILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788899988876543
No 128
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.65 E-value=1.2e+02 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhcccceeeeEEEEEcCCCcc
Q 030061 13 VLPLILLLCLACYICVVPVTEAIWLQIPSSGTK 45 (183)
Q Consensus 13 ~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~~~ 45 (183)
+++++|+|.|++ ...+++|.+...+++
T Consensus 162 ~ll~lllv~l~g------GGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 162 SLLLLLLVALIG------GGAYYYFKFYKPKQE 188 (218)
T ss_pred HHHHHHHHHHhh------cceEEEEEEeccccc
Confidence 344444444444 467788888766544
No 129
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.88 E-value=1.8e+02 Score=18.32 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=16.7
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 144 KKDKIEGVELHLKRLEAQVQSIHENLLFLKH 174 (183)
Q Consensus 144 ~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~ 174 (183)
-..+++..+.+.+.|...+..++.++.=+|.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555566666666666555554443
No 130
>smart00338 BRLZ basic region leucin zipper.
Probab=22.47 E-value=1.7e+02 Score=18.11 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=20.1
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030061 144 KKDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175 (183)
Q Consensus 144 ~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~R 175 (183)
++.++..|+.++..|...-..+..+...++..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776666666655555443
No 131
>PF14109 GldH_lipo: GldH lipoprotein
Probab=22.28 E-value=3.1e+02 Score=19.78 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=24.3
Q ss_pred eeEEEEECCCCCeEEeeec-cceeeEEE----EeccCcceEEEEEeC
Q 030061 74 TVSAKVTSPYGNNLHHNEN-VTHGQFAF----TTTEAGNYMACFWLG 115 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~-~~~g~f~f----~a~~~G~Y~~Cf~n~ 115 (183)
.+.+.+.||+|+.+-+--+ ..+.++.+ .-+.+|.|+|.+.--
T Consensus 69 tl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~ 115 (131)
T PF14109_consen 69 TLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQA 115 (131)
T ss_pred eEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEec
Confidence 6777777777766533222 12233322 335788888888754
No 132
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=22.27 E-value=1.3e+02 Score=18.58 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=10.1
Q ss_pred cccceeeeEEEEEcCC
Q 030061 27 CVVPVTEAIWLQIPSS 42 (183)
Q Consensus 27 ~~~~~~~al~f~I~~g 42 (183)
|+...+.|=.+-.+|+
T Consensus 13 ~~~~~a~AQWvV~DP~ 28 (55)
T PF13605_consen 13 LLAGPARAQWVVTDPG 28 (55)
T ss_pred hcCCcceeEEEEeCch
Confidence 4456677766666665
No 133
>PF15281 Consortin_C: Consortin C-terminus
Probab=21.53 E-value=83 Score=22.38 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhcccceeeeEEEEEc
Q 030061 14 LPLILLLCLACYICVVPVTEAIWLQIP 40 (183)
Q Consensus 14 ~~~~~~~c~~~~~~~~~~~~al~f~I~ 40 (183)
-++++|+|++.+.+.+ ..-|++=.+.
T Consensus 54 cl~L~LlclvTv~lS~-gGTALYCt~g 79 (113)
T PF15281_consen 54 CLLLLLLCLVTVVLSV-GGTALYCTFG 79 (113)
T ss_pred cHHHHHHHHHHHHHhc-cceEEEEecC
Confidence 4677788888854333 3445655543
No 134
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.47 E-value=61 Score=23.92 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=7.3
Q ss_pred hhhhhHHHHHHHHHH
Q 030061 8 LDRATVLPLILLLCL 22 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~ 22 (183)
|++..++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 445555555544443
No 135
>PRK10190 L,D-transpeptidase; Provisional
Probab=21.47 E-value=78 Score=26.71 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=16.2
Q ss_pred ccceeeeEEEEEcCCCcceeee
Q 030061 28 VVPVTEAIWLQIPSSGTKCVSE 49 (183)
Q Consensus 28 ~~~~~~al~f~I~~g~~~Cf~e 49 (183)
++..+.|..+.+|+.+.+.+.+
T Consensus 15 ~~~~~~A~~y~lp~~~~~lvG~ 36 (310)
T PRK10190 15 ASHTSLAVTYPLPPEGSRLVGQ 36 (310)
T ss_pred hhccccceeeccCCCCCceecc
Confidence 3455679999999887776655
No 136
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=21.31 E-value=86 Score=23.83 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHhhhcc
Q 030061 8 LDRATVLPLILLLCLACYICV 28 (183)
Q Consensus 8 ~~~~~~~~~~~~~c~~~~~~~ 28 (183)
-||+.-|++++++|++.++++
T Consensus 7 rdMilSL~vl~~~~~~i~~~~ 27 (169)
T PF14030_consen 7 RDMILSLAVLVAIVALIVAGV 27 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467888888888888885444
No 137
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=20.91 E-value=90 Score=24.62 Aligned_cols=15 Identities=7% Similarity=0.178 Sum_probs=11.4
Q ss_pred ccceeeeEEEEEcCC
Q 030061 28 VVPVTEAIWLQIPSS 42 (183)
Q Consensus 28 ~~~~~~al~f~I~~g 42 (183)
....-..++|++||.
T Consensus 32 w~~aP~~ltih~PPD 46 (199)
T PF11444_consen 32 WMRAPKRLTIHNPPD 46 (199)
T ss_pred HHhCCCceEEECCCc
Confidence 345568999999994
No 138
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=20.84 E-value=7.7e+02 Score=25.98 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCCeEEeeecc--ce--eeEEEEecc---CcceEEEEEeCC
Q 030061 53 SNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGNNLHHNENV--TH--GQFAFTTTE---AGNYMACFWLGS 116 (183)
Q Consensus 53 ~~~~v~~~y~v~~~~~---~~~~~~v~~~V~dp~g~~v~~~~~~--~~--g~f~f~a~~---~G~Y~~Cf~n~~ 116 (183)
.|+.+++..-.-+... .++. .+.+.+.+|+|.++.+..-. .+ +.+.|+..+ .|.|.+=++-..
T Consensus 407 pGE~v~~~~~~R~~~~~~a~~~~-p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~~~~~~ 479 (1621)
T COG2373 407 PGETVHVNALLRDFDGKTALDNQ-PLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYTLELYTGG 479 (1621)
T ss_pred CCceeeeeeeehhhcccccccCC-CeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEEEEEEeCC
Confidence 3666666665543221 1345 99999999999877653221 23 467777755 599998888654
No 139
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=20.62 E-value=87 Score=21.70 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=26.7
Q ss_pred EEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHH
Q 030061 126 LGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENL 169 (183)
Q Consensus 126 V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq 169 (183)
+-+|..+|..+....++ -.=.++|+.+++++|+...+++.+.+
T Consensus 12 Lv~D~~tG~va~~~~dv-i~~s~~pi~E~i~kLe~~addL~nsL 54 (96)
T PRK00965 12 LVMDPDTGLIAEMREDI-IVVDMDPIEEEINKLEALADDLENSL 54 (96)
T ss_pred eeeccccceeeeccCCe-EEEechHHHHHHHHHHHHHHHHHhcc
Confidence 34455555443321111 12358999999999999998887643
No 140
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.54 E-value=2.1e+02 Score=18.00 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 030061 157 RLEAQVQSI 165 (183)
Q Consensus 157 ~l~~~l~~I 165 (183)
++...++.+
T Consensus 42 ~L~~ei~~l 50 (80)
T PF04977_consen 42 ELKEEIERL 50 (80)
T ss_pred HHHHHHHHh
Confidence 333333333
No 141
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=20.37 E-value=3.2e+02 Score=19.28 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=23.5
Q ss_pred eeEEEEECCCCC---eEEeeeccceeeEE-----EEeccCcceEEEEEeCCC
Q 030061 74 TVSAKVTSPYGN---NLHHNENVTHGQFA-----FTTTEAGNYMACFWLGSN 117 (183)
Q Consensus 74 ~v~~~V~dp~g~---~v~~~~~~~~g~f~-----f~a~~~G~Y~~Cf~n~~~ 117 (183)
+|.++++..++. .+.+..-...|+.. -....+|.|++.|.....
T Consensus 18 gv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Y 69 (112)
T TIGR02962 18 GVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDY 69 (112)
T ss_pred CCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhh
Confidence 555555543322 23333323456554 122357999999987654
No 142
>COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only]
Probab=20.37 E-value=32 Score=27.08 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=36.4
Q ss_pred eeEEEEECCCCCeEEeeec-cc-eeeEEEEeccCcceEE-------EEEeCCCCCCCccEEEEEEEEEccc
Q 030061 74 TVSAKVTSPYGNNLHHNEN-VT-HGQFAFTTTEAGNYMA-------CFWLGSNPQKVADATLGLDWRIGFS 135 (183)
Q Consensus 74 ~v~~~V~dp~g~~v~~~~~-~~-~g~f~f~a~~~G~Y~~-------Cf~n~~~~~~~~~~~V~f~i~~g~~ 135 (183)
-.+..|||.+|..+..... .. ..+.....+..|.|.= -+.|.- ..-.+++||-+++..
T Consensus 87 VldAsIY~~~g~LlA~ag~~~~vR~~l~Ldg~~~g~y~nqQiVEPI~~~~gi----~GfLRiTlDt~~~at 153 (214)
T COG3726 87 VLDASIYDEDGDLLARAGSSVNVRDRLALDGKTAGLYFNQQIVEPIAGKNGI----LGFLRITLDTHVLAT 153 (214)
T ss_pred eeeceeecccchhHHhcccccchhhhhhcCCCCCcccccceeecccccCCCc----ceeEEEEEecccchh
Confidence 7788999999988755432 11 4456666777777743 122221 245889998877643
No 143
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=20.15 E-value=2.4e+02 Score=23.01 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.4
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030061 146 DKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177 (183)
Q Consensus 146 ~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~ 177 (183)
-..++|+++.+.++.+++++.+..+-..+|+.
T Consensus 204 V~td~L~keAe~i~~~lekl~eq~~~~~~~~~ 235 (244)
T COG1938 204 VDTDKLEKEAEEIEEQLEKLAEQLEKEEERVE 235 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35778899999999999998888877776544
No 144
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=20.14 E-value=59 Score=20.09 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.9
Q ss_pred ehhhhhhHHHHHHHHHHHh
Q 030061 6 ISLDRATVLPLILLLCLAC 24 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~ 24 (183)
++.-=.++|++++++-|++
T Consensus 19 vtyaDlmTLLl~fFVlL~s 37 (58)
T PF13677_consen 19 VTYADLMTLLLAFFVLLFS 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555
No 145
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=20.14 E-value=3.6e+02 Score=19.75 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=26.6
Q ss_pred eeEEEEECCCC---CeEEeeeccceeeEEEE----eccCcceEEEEEeCCC
Q 030061 74 TVSAKVTSPYG---NNLHHNENVTHGQFAFT----TTEAGNYMACFWLGSN 117 (183)
Q Consensus 74 ~v~~~V~dp~g---~~v~~~~~~~~g~f~f~----a~~~G~Y~~Cf~n~~~ 117 (183)
+|.+++...++ ..+.+..-...|++.+- ...+|.|++=|.....
T Consensus 44 gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Y 94 (137)
T PRK15036 44 DVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDY 94 (137)
T ss_pred CCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchh
Confidence 66666665432 23444443457777651 2457999999987654
Done!