BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030062
(183 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225437969|ref|XP_002271666.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic [Vitis vinifera]
gi|297744226|emb|CBI37196.3| unnamed protein product [Vitis vinifera]
Length = 179
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/183 (74%), Positives = 158/183 (86%), Gaps = 4/183 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MAAL+SLA SP+SHC +SP LSG+ +WAVH SA S FNG+S+H+PR + + + R+
Sbjct: 1 MAALQSLAFTSPLSHCC---KQSP-LSGLSSWAVHRSAHSSFNGRSLHLPRPQWAALKRS 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
S SG ITM VKPTIQFIQGTDE TVPDV+LT+SRDG+NGMAIF F +PSVFDSSGE+GD
Sbjct: 57 SSTSGLITMMVKPTIQFIQGTDEQTVPDVRLTQSRDGTNGMAIFKFEQPSVFDSSGEVGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITGFYMIDEEG LQSVDVSAKF+NG+PS IEAKY+MRSPREWDRFMRFMERY+N+NGLQF
Sbjct: 117 ITGFYMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRSPREWDRFMRFMERYSNENGLQF 176
Query: 181 VKK 183
VKK
Sbjct: 177 VKK 179
>gi|118488045|gb|ABK95843.1| unknown [Populus trichocarpa]
Length = 181
Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/183 (70%), Positives = 153/183 (83%), Gaps = 2/183 (1%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L+SLALASP++ H Q ++ S SG +WAV+ S+ S FNGQS+ +PR+RL + R
Sbjct: 1 MATLQSLALASPVAQ--HLQHQTRSFSGSGSWAVNKSSYSLFNGQSLCLPRLRLPLIRRK 58
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ SG +TM VKP IQF+QG DE TVPDV+LTKSRDG+NGMAIF+F +PSVFDSS E+GD
Sbjct: 59 LRTSGLVTMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEVGD 118
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITGFYMIDEEG LQSVDV+AKFVNG+P RIEAKYIMR+PREWDRFMRFME+YAN NGLQF
Sbjct: 119 ITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMEKYANANGLQF 178
Query: 181 VKK 183
VKK
Sbjct: 179 VKK 181
>gi|351725219|ref|NP_001235805.1| uncharacterized protein LOC100306491 [Glycine max]
gi|255628701|gb|ACU14695.1| unknown [Glycine max]
Length = 179
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/183 (67%), Positives = 148/183 (80%), Gaps = 4/183 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L SLAL+SP+S+ + P + + VH S S FNGQ++H+P +RL + +N
Sbjct: 1 MATLHSLALSSPLSNSL----QKPRSCAVPSSIVHQSTNSSFNGQTLHLPCLRLPVLRQN 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ + P+ M VKP IQFIQGTDE T+PDV+LTKSRDG+NGMAIF+F +PSVFDSSGEIGD
Sbjct: 57 TPMHMPVIMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITGFYMIDEEG LQSVDVSAKFVNG+PS IEAKY+MRSPR+WDRFMRFMERY+N NGLQF
Sbjct: 117 ITGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPRDWDRFMRFMERYSNANGLQF 176
Query: 181 VKK 183
+KK
Sbjct: 177 IKK 179
>gi|255571176|ref|XP_002526538.1| Photosystem II reaction center W protein, putative [Ricinus
communis]
gi|223534099|gb|EEF35816.1| Photosystem II reaction center W protein, putative [Ricinus
communis]
Length = 178
Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 129/182 (70%), Positives = 149/182 (81%), Gaps = 5/182 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L+SLA ASP+SH H Q+RS G WAVH A+SPF+G+S+ + +L+ +
Sbjct: 1 MATLQSLAFASPVSHYSH-QTRS--FPGSFCWAVHRIARSPFSGKSLRLSHPQLTSTRQK 57
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
S S ITM KP+IQFIQGTDE T+PDV+LTKSRDG+NGMAIF+F EPSVFDSS E+GD
Sbjct: 58 S--SRFITMMAKPSIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDEPSVFDSSAELGD 115
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITGFYMIDEEG LQSVDVSAKFVNG+P+RIEAKY+MRSPREWDRFMRFMERYAN NGLQF
Sbjct: 116 ITGFYMIDEEGVLQSVDVSAKFVNGKPARIEAKYVMRSPREWDRFMRFMERYANANGLQF 175
Query: 181 VK 182
VK
Sbjct: 176 VK 177
>gi|388491040|gb|AFK33586.1| unknown [Lotus japonicus]
Length = 179
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 146/183 (79%), Gaps = 4/183 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L SLAL+SP+S+ + P L + + V S+ S FNGQ +H+P +RL +T+N
Sbjct: 1 MATLHSLALSSPLSNSI----QKPRLYSVPSSIVQRSSNSSFNGQHLHLPHLRLPKLTQN 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ + P+ M VKP IQFIQG DELT+PDV+LTKSRDG+NGMAIF F +PSVFD+SGE+GD
Sbjct: 57 TAMHTPVIMMVKPAIQFIQGNDELTIPDVRLTKSRDGTNGMAIFKFEQPSVFDASGEVGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITG YMIDEEG LQS DVSAKF+NG+PS IEAKYIMR+PREWDRFMRFMERY+N NGLQF
Sbjct: 117 ITGLYMIDEEGVLQSTDVSAKFINGKPSIIEAKYIMRTPREWDRFMRFMERYSNANGLQF 176
Query: 181 VKK 183
+KK
Sbjct: 177 IKK 179
>gi|356537186|ref|XP_003537110.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Glycine max]
Length = 179
Score = 255 bits (651), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 123/183 (67%), Positives = 146/183 (79%), Gaps = 4/183 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L SLAL+SP+S+ + P + + VH S S FNGQ++ MP +RL + ++
Sbjct: 1 MATLHSLALSSPLSNSL----QKPHSYAVPSSIVHQSTNSSFNGQTLRMPCLRLPVLRQS 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ + P+ M KP IQFIQGTDE T+PDV+LTKSRDG+NGMAIF+F +PSVFDSSGEIGD
Sbjct: 57 TPMHMPVIMMAKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITGFYMIDEEG LQSVDVSAKFVNG+PS IEAKY+MRSPREWDRFMRFMERY+N NGLQF
Sbjct: 117 ITGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPREWDRFMRFMERYSNANGLQF 176
Query: 181 VKK 183
VKK
Sbjct: 177 VKK 179
>gi|388494372|gb|AFK35252.1| unknown [Medicago truncatula]
Length = 182
Score = 241 bits (615), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 119/185 (64%), Positives = 148/185 (80%), Gaps = 7/185 (3%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQ--SPFNGQSVHMPRMRLSPVT 58
MA + SLA +SP+ + + RS S + ++ +HGS S FNGQ +H+P +RL +T
Sbjct: 1 MATMHSLAFSSPLYNSIQ-KPRSYSATSLI---IHGSLNLNSSFNGQHLHVPSLRLPMIT 56
Query: 59 RNSKVSGP-ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE 117
+ + + P I MA KP IQFIQG+DELT+PDVKLTKS+DG+NGMAIF F +PSVFDSSGE
Sbjct: 57 QKTPMHMPVIMMAGKPKIQFIQGSDELTIPDVKLTKSKDGTNGMAIFRFDQPSVFDSSGE 116
Query: 118 IGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNG 177
+GDITGFYMIDEEG LQSVDV+AKFVNG+PS IEAKYIMR+PR+WDRFMRFMERY++ NG
Sbjct: 117 VGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPRDWDRFMRFMERYSDANG 176
Query: 178 LQFVK 182
LQF+K
Sbjct: 177 LQFIK 181
>gi|449445636|ref|XP_004140578.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Cucumis sativus]
Length = 221
Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/188 (62%), Positives = 145/188 (77%), Gaps = 10/188 (5%)
Query: 1 MAALRSLA-LASPIS-HCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA+L+SLA SP S H HP S P LS +++H SA S F+G+S+ + + +T
Sbjct: 39 MASLQSLASTTSPSSPHLLHPSSTKPKLS----YSLHSSAFSSFHGRSLSLSTTKCHTLT 94
Query: 59 RNS---KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + PI M V P IQFIQGTDE T+PDV+LTKSRDG+NGMAIF F +PSVFDSS
Sbjct: 95 RRTYRQRSWNPILM-VLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 153
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQ 175
E+GDITGFYMIDEEG +QSVDV+AKF+NG+P+ IEAKY+MR+PREWDRFMRFMERY+N
Sbjct: 154 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 213
Query: 176 NGLQFVKK 183
NG+QFVKK
Sbjct: 214 NGMQFVKK 221
>gi|449487345|ref|XP_004157580.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Cucumis sativus]
Length = 226
Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 118/188 (62%), Positives = 145/188 (77%), Gaps = 10/188 (5%)
Query: 1 MAALRSLA-LASPIS-HCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA+L+SLA SP S H HP S P LS +++H SA S F+G+S+ + + +T
Sbjct: 44 MASLQSLASTTSPSSPHLLHPSSTKPKLS----YSLHSSAFSSFHGRSLSLSTTKCHTLT 99
Query: 59 RNS---KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + PI M V P IQFIQGTDE T+PDV+LTKSRDG+NGMAIF F +PSVFDSS
Sbjct: 100 RRTYRQRSWNPILM-VLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 158
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQ 175
E+GDITGFYMIDEEG +QSVDV+AKF+NG+P+ IEAKY+MR+PREWDRFMRFMERY+N
Sbjct: 159 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 218
Query: 176 NGLQFVKK 183
NG+QFVKK
Sbjct: 219 NGMQFVKK 226
>gi|357122411|ref|XP_003562909.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Brachypodium distachyon]
Length = 179
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 142/181 (78%), Gaps = 3/181 (1%)
Query: 4 LRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSA-QSPFNGQSVHMPRMRLSPVTRNSK 62
+++LA+ASP++ P+ R +++G+ + Q+ F G S+H R + P TR S
Sbjct: 1 MKALAVASPVAAA-QPRRRCLAVAGVPCHRIMSQQLQTSFTGVSLHR-RQQHKPSTRPSS 58
Query: 63 VSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDIT 122
+ MA +P+IQFIQGTDE TVPDV+LTKSRDGSNG+A+F+F +PSVFDSS E+GDIT
Sbjct: 59 SVVAMAMASRPSIQFIQGTDEQTVPDVRLTKSRDGSNGVAVFTFDQPSVFDSSAELGDIT 118
Query: 123 GFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
GFYMIDEEGTLQ+VDVSAKFVNG+P+ +EAKY+MR+PR+WDRFMRFMERY+ NGLQF+K
Sbjct: 119 GFYMIDEEGTLQTVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANGLQFLK 178
Query: 183 K 183
K
Sbjct: 179 K 179
>gi|122064924|sp|Q0JG75.2|PSB28_ORYSJ RecName: Full=Photosystem II reaction center PSB28 protein,
chloroplastic; AltName: Full=Photosystem II protein
W-like; Flags: Precursor
gi|57899200|dbj|BAD87310.1| putative photosystem II protein reaction center W [Oryza sativa
Japonica Group]
gi|125573262|gb|EAZ14777.1| hypothetical protein OsJ_04705 [Oryza sativa Japonica Group]
gi|215769143|dbj|BAH01372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 180
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 4/182 (2%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNS 61
A +++LA+ASPIS P+ SG + ++H S F G S+ R + + + R+
Sbjct: 3 AVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSR 58
Query: 62 KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDI 121
+ MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDI
Sbjct: 59 PSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDI 118
Query: 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFV 181
TGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMERY+ NGLQFV
Sbjct: 119 TGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFV 178
Query: 182 KK 183
KK
Sbjct: 179 KK 180
>gi|125529042|gb|EAY77156.1| hypothetical protein OsI_05122 [Oryza sativa Indica Group]
Length = 180
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 138/182 (75%), Gaps = 4/182 (2%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNS 61
A +++LA+ASPIS P+ SG + ++H S F G S+ R + + + R+
Sbjct: 3 AVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSR 58
Query: 62 KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDI 121
+ MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDI
Sbjct: 59 PSVQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDI 118
Query: 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFV 181
TGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMERY+ NGLQFV
Sbjct: 119 TGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFV 178
Query: 182 KK 183
KK
Sbjct: 179 KK 180
>gi|242055531|ref|XP_002456911.1| hypothetical protein SORBIDRAFT_03g045320 [Sorghum bicolor]
gi|241928886|gb|EES02031.1| hypothetical protein SORBIDRAFT_03g045320 [Sorghum bicolor]
Length = 176
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 136/182 (74%), Gaps = 10/182 (5%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMP-RMRLSPVTRN 60
A +++LA+ASP+S Q R G QS F+G SV P R R + R
Sbjct: 3 AVMKALAVASPVSARAAQQPRRYVAGG------ASQLQSSFHGVSVQCPGRPRQATPRRG 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+V + MA +P+IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GD
Sbjct: 57 VQV---VMMAARPSIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEQPSVFDSSAELGD 113
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITG YMID+EG LQSVDVSAKFVNG+P+RIEAKY+MR+PR+WDRFMRFMERY+ NGLQF
Sbjct: 114 ITGLYMIDDEGVLQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMERYSQANGLQF 173
Query: 181 VK 182
VK
Sbjct: 174 VK 175
>gi|18417239|ref|NP_567814.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
gi|75161816|sp|Q8W0Y8.1|PSB28_ARATH RecName: Full=Photosystem II reaction center PSB28 protein,
chloroplastic; AltName: Full=Photosystem II protein
W-like; Flags: Precursor
gi|18087645|gb|AAL58951.1|AF462867_1 AT4g28660/T5F17_110 [Arabidopsis thaliana]
gi|21360421|gb|AAM47326.1| AT4g28660/T5F17_110 [Arabidopsis thaliana]
gi|21592461|gb|AAM64412.1| photosystem II protein W-like [Arabidopsis thaliana]
gi|332660119|gb|AEE85519.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
Length = 183
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 141/188 (75%), Gaps = 11/188 (5%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA +RS+ + ++H R+ SGIV + +V S F G V +PR + P +
Sbjct: 1 MACVRSIGSLTSVNH----SQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQ--PSS 54
Query: 59 RNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSS
Sbjct: 55 RTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 114
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQ 175
GE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMERY++Q
Sbjct: 115 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 174
Query: 176 NGLQFVKK 183
NGLQFVKK
Sbjct: 175 NGLQFVKK 182
>gi|7269721|emb|CAB81454.1| photosystem II protein W-like [Arabidopsis thaliana]
Length = 224
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 141/188 (75%), Gaps = 11/188 (5%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA +RS+ + ++H R+ SGIV + +V S F G V +PR + P +
Sbjct: 42 MACVRSIGSLTSVNHS----QRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQ--PSS 95
Query: 59 RNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSS
Sbjct: 96 RTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 155
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQ 175
GE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMERY++Q
Sbjct: 156 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 215
Query: 176 NGLQFVKK 183
NGLQFVKK
Sbjct: 216 NGLQFVKK 223
>gi|297803208|ref|XP_002869488.1| photosystem II reaction centre W family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315324|gb|EFH45747.1| photosystem II reaction centre W family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 183
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/187 (58%), Positives = 138/187 (73%), Gaps = 9/187 (4%)
Query: 1 MAALRSLALASPISHCWHPQSRSP-SLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTR 59
MA +RS+ + ++H RS LS + GS+ F G V + +R P +R
Sbjct: 1 MACVRSIGSLTSVTHSPRNVPRSGIVLSSCSVLPIKGSS---FTGSPVSL--LRAQPSSR 55
Query: 60 NS---KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116
+ + IT+ VKPT+QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSG
Sbjct: 56 TALRPRKPVSITLMVKPTLQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSG 115
Query: 117 EIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQN 176
E+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMERY++QN
Sbjct: 116 EVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQN 175
Query: 177 GLQFVKK 183
GLQFVKK
Sbjct: 176 GLQFVKK 182
>gi|326519394|dbj|BAJ96696.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 182
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/184 (59%), Positives = 137/184 (74%), Gaps = 8/184 (4%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHM-PR--MRLSPVT 58
A ++ LA ASP+S P+ SG ++H S F G S+ PR + SP
Sbjct: 3 AVMKPLAAASPVSAPPSPRRSVAGSSGAPCQSLHSS----FRGISLRCRPRKPVHRSPPL 58
Query: 59 RNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI 118
R+S+ + + +A+KP IQFIQGTDE T+PDV+LTKSRDG+NG+AIF F +PSVFDSS E+
Sbjct: 59 RSSRAAAQV-VAMKPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFEFDQPSVFDSSAEL 117
Query: 119 GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGL 178
GDITGFYMIDEEG LQ+VDVSAKFVNG+P+R+EAKY+MR+ +WDRFMRFMERY+ NGL
Sbjct: 118 GDITGFYMIDEEGMLQTVDVSAKFVNGKPARVEAKYVMRTAGDWDRFMRFMERYSQANGL 177
Query: 179 QFVK 182
QFVK
Sbjct: 178 QFVK 181
>gi|224070060|ref|XP_002303109.1| predicted protein [Populus trichocarpa]
gi|222844835|gb|EEE82382.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/115 (84%), Positives = 106/115 (92%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M VKP IQF+QG DE TVPDV+LTKSRDG+NGMAIF+F +PSVFDSS E+GDITGFYMID
Sbjct: 1 MMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEVGDITGFYMID 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
EEG LQSVDV+AKFVNG+P RIEAKYIMR+PREWDRFMRFMERYAN NGLQFVKK
Sbjct: 61 EEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMERYANANGLQFVKK 115
>gi|116782491|gb|ABK22527.1| unknown [Picea sitchensis]
gi|116791920|gb|ABK26159.1| unknown [Picea sitchensis]
gi|224284580|gb|ACN40023.1| unknown [Picea sitchensis]
Length = 202
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/144 (71%), Positives = 120/144 (83%), Gaps = 1/144 (0%)
Query: 40 SPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSN 99
S F+GQ +H+P L R S+ S P+TM KP IQFIQGT+E ++PDVKLTKSRDG+
Sbjct: 60 STFSGQRLHLP-ASLWVSARGSRKSIPVTMMSKPVIQFIQGTNEQSIPDVKLTKSRDGTI 118
Query: 100 GMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSP 159
GMA FSF +PSVFDSS E+GDITG YMIDEEG LQSVDV+AKFVNG+PS IEA+YIMRSP
Sbjct: 119 GMATFSFDQPSVFDSSRELGDITGLYMIDEEGVLQSVDVNAKFVNGKPSTIEARYIMRSP 178
Query: 160 REWDRFMRFMERYANQNGLQFVKK 183
EWDRFMRFMERY+N+NGLQF+KK
Sbjct: 179 PEWDRFMRFMERYSNENGLQFIKK 202
>gi|334186999|ref|NP_001190860.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
gi|332660120|gb|AEE85520.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
Length = 198
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/199 (56%), Positives = 146/199 (73%), Gaps = 18/199 (9%)
Query: 1 MAALRSLALASPISHCWH--PQS---RSPSLS------GIV--TWAVHGSAQSPFNGQSV 47
MA +RS+ + ++H P+S ++P+ + GIV + +V S F G V
Sbjct: 1 MACVRSIGSLTSVNHSQRNVPRSGTRKNPNFALLIRRIGIVLSSCSVLPIKSSSFTGSPV 60
Query: 48 HMPRMRLSPVTRNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
+PR + P +R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+F
Sbjct: 61 SLPRAQ--PSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALF 118
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
SF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDR
Sbjct: 119 SFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDR 178
Query: 165 FMRFMERYANQNGLQFVKK 183
FMRFMERY++QNGLQFVKK
Sbjct: 179 FMRFMERYSDQNGLQFVKK 197
>gi|195611266|gb|ACG27463.1| photosystem II reaction center W protein [Zea mays]
Length = 180
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/145 (71%), Positives = 123/145 (84%), Gaps = 1/145 (0%)
Query: 39 QSPFNGQSVHMP-RMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDG 97
QSPF+G SV P R R + R +V+ + AV+P IQFIQGTDE T+PDV+LTKSRDG
Sbjct: 35 QSPFHGVSVQCPGRPRRATPRRGPQVAVVVAAAVRPAIQFIQGTDEQTIPDVRLTKSRDG 94
Query: 98 SNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMR 157
+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+RIEAKY+MR
Sbjct: 95 TNGVAIFTFEQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPARIEAKYVMR 154
Query: 158 SPREWDRFMRFMERYANQNGLQFVK 182
+PR+WDRFMRFMERY+ NGLQFVK
Sbjct: 155 TPRDWDRFMRFMERYSQANGLQFVK 179
>gi|226528942|ref|NP_001151243.1| photosystem II reaction center W protein [Zea mays]
gi|195645280|gb|ACG42108.1| photosystem II reaction center W protein [Zea mays]
gi|224035967|gb|ACN37059.1| unknown [Zea mays]
gi|414878789|tpg|DAA55920.1| TPA: photosystem II reaction center psb28 protein [Zea mays]
Length = 179
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/144 (69%), Positives = 118/144 (81%)
Query: 39 QSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGS 98
QSPF+G SV P R + + AV+P IQFIQGTDE T+PDV+LTKSRDG+
Sbjct: 35 QSPFHGVSVQCPGRPRRATPRRGRQVAVVAAAVRPAIQFIQGTDEQTIPDVRLTKSRDGT 94
Query: 99 NGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRS 158
NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+RIEAKY+MR+
Sbjct: 95 NGVAIFTFEQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPARIEAKYVMRT 154
Query: 159 PREWDRFMRFMERYANQNGLQFVK 182
PR+WDRFMRFMERY+ NGLQFVK
Sbjct: 155 PRDWDRFMRFMERYSQANGLQFVK 178
>gi|413951360|gb|AFW84009.1| hypothetical protein ZEAMMB73_786886 [Zea mays]
Length = 182
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 138/190 (72%), Gaps = 20/190 (10%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGI-------VTWAVHGSAQSPFNG-QSVHMP-RM 52
A +++LA+ASP+S R ++G+ ++H QS F+G SV P R
Sbjct: 3 AVMKALAVASPVSARAAQHPRRYHVAGVPSQQHQQQNLSLH--LQSLFHGVSSVQCPGRW 60
Query: 53 RLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF 112
R + V + MA +P IQFIQGTDE TVPDV+LTKSRDG+NG+A+F+F PSVF
Sbjct: 61 RRAQV---------VAMAGRPAIQFIQGTDEQTVPDVRLTKSRDGTNGVAVFAFERPSVF 111
Query: 113 DSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY 172
DSS E+GDITGFYM+D+EG LQSVDVSAKFVNG+P+RIEAKY+MR+P+EWDRFMRFMERY
Sbjct: 112 DSSAELGDITGFYMVDDEGVLQSVDVSAKFVNGKPARIEAKYVMRTPQEWDRFMRFMERY 171
Query: 173 ANQNGLQFVK 182
+ NGLQFV+
Sbjct: 172 SRANGLQFVR 181
>gi|326503710|dbj|BAJ86361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 182
Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 139/186 (74%), Gaps = 10/186 (5%)
Query: 4 LRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQ--SPFNGQSVHMPRMRLSPVTRNS 61
+ +LA+ASP PQ R L+ +W ++Q + F+G +V + + LSP +S
Sbjct: 1 MEALAVASPA--LTRPQPRRRCLAA-GSWCQRRTSQLHTSFSGVTVQLHKP-LSPTATSS 56
Query: 62 KVSGPIT----MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE 117
+ S M +P+IQFIQGTDE T+PDV+LTKSRDGSNG+AIF+F +PSVFDSS E
Sbjct: 57 RRSSSSVVAVAMLSRPSIQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFDSSAE 116
Query: 118 IGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNG 177
+GDITGFYM+DEEGTL SVDVSAKFVNG+P+ +EAKY+MR+PR+WDRFMRFMERY+ NG
Sbjct: 117 LGDITGFYMVDEEGTLSSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMERYSQANG 176
Query: 178 LQFVKK 183
LQF+KK
Sbjct: 177 LQFLKK 182
>gi|414878780|tpg|DAA55911.1| TPA: hypothetical protein ZEAMMB73_880653 [Zea mays]
gi|414878783|tpg|DAA55914.1| TPA: hypothetical protein ZEAMMB73_271109 [Zea mays]
Length = 155
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 103/111 (92%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG
Sbjct: 45 PAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEQPSVFDSSAELGDITGFYMIDDEGV 104
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
LQSVDVSAKFVNG+P+RIEAKY+MR+PR+WDRFMRFMERY+ NGLQFVK
Sbjct: 105 LQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMERYSQANGLQFVKN 155
>gi|413951359|gb|AFW84008.1| hypothetical protein ZEAMMB73_786886 [Zea mays]
Length = 115
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 105/114 (92%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
MA +P IQFIQGTDE TVPDV+LTKSRDG+NG+A+F+F PSVFDSS E+GDITGFYM+D
Sbjct: 1 MAGRPAIQFIQGTDEQTVPDVRLTKSRDGTNGVAVFAFERPSVFDSSAELGDITGFYMVD 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+EG LQSVDVSAKFVNG+P+RIEAKY+MR+P+EWDRFMRFMERY+ NGLQFV+
Sbjct: 61 DEGVLQSVDVSAKFVNGKPARIEAKYVMRTPQEWDRFMRFMERYSRANGLQFVR 114
>gi|115442119|ref|NP_001045339.1| Os01g0938100 [Oryza sativa Japonica Group]
gi|113534870|dbj|BAF07253.1| Os01g0938100, partial [Oryza sativa Japonica Group]
Length = 97
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/97 (81%), Positives = 91/97 (93%)
Query: 87 PDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGR 146
PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+
Sbjct: 1 PDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGK 60
Query: 147 PSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
P+ IEAKY+MR+PREWDRFMRFMERY+ NGLQFVKK
Sbjct: 61 PALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 97
>gi|302766731|ref|XP_002966786.1| hypothetical protein SELMODRAFT_85520 [Selaginella moellendorffii]
gi|302792389|ref|XP_002977960.1| hypothetical protein SELMODRAFT_108203 [Selaginella moellendorffii]
gi|300153981|gb|EFJ20617.1| hypothetical protein SELMODRAFT_108203 [Selaginella moellendorffii]
gi|300166206|gb|EFJ32813.1| hypothetical protein SELMODRAFT_85520 [Selaginella moellendorffii]
Length = 114
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 97/113 (85%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
VKP+IQFI+G DEL VPD+ LT+S+D NG+A F F +PSVFDSS E+G+ITG YMID+E
Sbjct: 2 VKPSIQFIRGVDELVVPDISLTRSQDQRNGVATFVFDQPSVFDSSREMGEITGIYMIDDE 61
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
G LQSVDVSAKFVNG+P++IEAKY+MR+ EWDRFMRFMERYA +N L FVKK
Sbjct: 62 GVLQSVDVSAKFVNGKPAKIEAKYVMRNIGEWDRFMRFMERYAAENNLGFVKK 114
>gi|168059549|ref|XP_001781764.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666766|gb|EDQ53412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 115
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 97/114 (85%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M VKP +QFI+G DE +VP+++LT+S DG+NG AIF F +PSVFDSS E+GDITG YM+D
Sbjct: 1 MQVKPVLQFIRGVDERSVPEIRLTRSPDGTNGKAIFVFDQPSVFDSSRELGDITGLYMLD 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EEG L +VDVSAKF+NG+PS+IE++YIMR+ EWDRFMRFMERYA +N L FVK
Sbjct: 61 EEGVLSTVDVSAKFLNGKPSKIESQYIMRNTTEWDRFMRFMERYAKENQLGFVK 114
>gi|168026840|ref|XP_001765939.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682845|gb|EDQ69260.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 115
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 97/114 (85%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M VKP IQFI+G DE VP+++LT+S +G+NG AIF F +PSVFD+S E+GDITG Y++D
Sbjct: 1 MQVKPVIQFIRGVDERVVPEIRLTRSPNGTNGKAIFVFDQPSVFDASRELGDITGLYLVD 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EEGTL +V+VSAKF+NG+PS+IE++Y+MR+ EWDRFMRFMERYA +N L FVK
Sbjct: 61 EEGTLSTVEVSAKFLNGKPSKIESQYVMRNTTEWDRFMRFMERYAKENQLGFVK 114
>gi|384253052|gb|EIE26527.1| photosystem II reaction cent [Coccomyxa subellipsoidea C-169]
Length = 141
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 104/139 (74%), Gaps = 1/139 (0%)
Query: 46 SVHMPRMRLSPVTRNSKVSGPIT-MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
S + + S TR + S T +++ +IQFI+G +E TVPDV+LT++RDGS+G A F
Sbjct: 2 SAKQVKQQSSSSTRWCRASASATILSMASSIQFIRGVNEPTVPDVRLTRARDGSSGTASF 61
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
F PSVF++S E+GDITG Y++D+EGTL +VDV AKF+NG+P RIEAKY+MRS EWDR
Sbjct: 62 VFKSPSVFEASSELGDITGLYLVDDEGTLTTVDVQAKFLNGKPDRIEAKYVMRSGFEWDR 121
Query: 165 FMRFMERYANQNGLQFVKK 183
FMRFMERYA +N L F KK
Sbjct: 122 FMRFMERYAEENELGFTKK 140
>gi|19880501|gb|AAM00366.1| saline responsive OSSRII protein [Oryza sativa]
Length = 98
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 89/98 (90%)
Query: 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNG 145
+PDV+LTKS DG+ G+AIF+F +PSVFDSS ++GDITGFYMID+EG LQSVDVSAKFVNG
Sbjct: 1 LPDVRLTKSGDGTKGVAIFTFDQPSVFDSSAKLGDITGFYMIDDEGVLQSVDVSAKFVNG 60
Query: 146 RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+P+ IEAKY+MR+PREWDRFMRFMERY+ N LQFVKK
Sbjct: 61 KPALIEAKYVMRTPREWDRFMRFMERYSQANVLQFVKK 98
>gi|307110368|gb|EFN58604.1| hypothetical protein CHLNCDRAFT_19726 [Chlorella variabilis]
Length = 114
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 89/109 (81%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+++FI+G +E T+PDVKLT+SRDG++G A F F P++F++S E+GDITG YM D+EGT+
Sbjct: 4 SMEFIKGIEEPTIPDVKLTRSRDGASGTATFVFQNPAIFEASSELGDITGLYMNDDEGTI 63
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
Q+VDV AKFVNGRP +IE KY+MRS EWDRFMRFMERYA GL F K
Sbjct: 64 QTVDVQAKFVNGRPDKIEVKYVMRSSFEWDRFMRFMERYAEDKGLGFQK 112
>gi|302829687|ref|XP_002946410.1| hypothetical protein VOLCADRAFT_103002 [Volvox carteri f.
nagariensis]
gi|300268156|gb|EFJ52337.1| hypothetical protein VOLCADRAFT_103002 [Volvox carteri f.
nagariensis]
Length = 1237
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 86/109 (78%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
+QFI+G +E TVP+V+LT+SR G+NG A+F F PS+F +SGE+GDITG +M+D+EG L
Sbjct: 1128 LQFIKGVNEPTVPEVRLTRSRTGANGTAMFVFENPSIFQASGEMGDITGLFMVDDEGVLS 1187
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ DV AKF+NG+P IEAKY MRS EWDRFMRFM+RYA NGL F K
Sbjct: 1188 TTDVKAKFINGKPQAIEAKYQMRSQFEWDRFMRFMDRYAEDNGLGFEKN 1236
>gi|145354881|ref|XP_001421703.1| psbW, PSII-W, photosystem II polypeptide [Ostreococcus lucimarinus
CCE9901]
gi|144581941|gb|ABO99996.1| psbW, PSII-W, photosystem II polypeptide [Ostreococcus lucimarinus
CCE9901]
Length = 129
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Query: 57 VTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116
V R ++ S +T A +IQF++G +E +VP+VKLT+S+DGSNG A F F+EP VF++
Sbjct: 5 VARATRASRAVTRAGTTSIQFVKGQNETSVPEVKLTRSKDGSNGTAFFIFAEPDVFENG- 63
Query: 117 EIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQN 176
GDITG ++ DEEG + +VDV+AKF+NG+PS IEA+Y+M++ R+WDRFMRFM RYA N
Sbjct: 64 -QGDITGMFLNDEEGEMSTVDVNAKFINGKPSGIEARYVMKTERDWDRFMRFMARYAEDN 122
Query: 177 GLQFVKK 183
GL F KK
Sbjct: 123 GLGFAKK 129
>gi|255079050|ref|XP_002503105.1| photosystem II 13kD protein, chloroplast precursor [Micromonas sp.
RCC299]
gi|226518371|gb|ACO64363.1| photosystem II 13kD protein, chloroplast precursor [Micromonas sp.
RCC299]
Length = 118
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 93/117 (79%)
Query: 67 ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYM 126
+T+A +IQF++GT+E +VPDVKLT+S+DG+NG A F FSEP VF+++ G+ITG ++
Sbjct: 1 MTVAADTSIQFVKGTNETSVPDVKLTRSKDGTNGTAFFWFSEPDVFEATELEGEITGMFL 60
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
ID+EG L +VDV+AKF+NG+P IEA Y+M+S EW+RFMRFMERYA NGL F K
Sbjct: 61 IDQEGELSTVDVNAKFLNGKPQGIEATYVMKSTNEWNRFMRFMERYAEDNGLGFAAK 117
>gi|159464615|ref|XP_001690537.1| photosystem II subunit 28 [Chlamydomonas reinhardtii]
gi|158280037|gb|EDP05796.1| photosystem II subunit 28 [Chlamydomonas reinhardtii]
Length = 144
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 87/109 (79%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
++QFI+G E TVP+V+LT+SR G+NG AIF F PS+F +SGE+GDITG +M+D+EGTL
Sbjct: 36 SLQFIKGVAEPTVPEVRLTRSRTGANGTAIFVFENPSIFQASGEMGDITGLFMVDDEGTL 95
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ DV AKF+NG+P IEAK+ MRS EWDRFMRFM+RYA +N L F K
Sbjct: 96 STTDVKAKFINGKPQAIEAKFNMRSQFEWDRFMRFMDRYAAENDLGFEK 144
>gi|361066809|gb|AEW07716.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149062|gb|AFG56398.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149064|gb|AFG56399.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149066|gb|AFG56400.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149068|gb|AFG56401.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149070|gb|AFG56402.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149072|gb|AFG56403.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149074|gb|AFG56404.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149076|gb|AFG56405.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149078|gb|AFG56406.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149080|gb|AFG56407.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149082|gb|AFG56408.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149084|gb|AFG56409.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149086|gb|AFG56410.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149088|gb|AFG56411.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149090|gb|AFG56412.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149092|gb|AFG56413.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149094|gb|AFG56414.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149096|gb|AFG56415.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
Length = 85
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 80/85 (94%)
Query: 80 GTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVS 139
GTDE +VPDVKL+KSRDG++G+AIFSF +PSVFDSS E+GDITG YMIDEEG LQSVDVS
Sbjct: 1 GTDEQSVPDVKLSKSRDGTSGLAIFSFDQPSVFDSSRELGDITGLYMIDEEGVLQSVDVS 60
Query: 140 AKFVNGRPSRIEAKYIMRSPREWDR 164
AKFVNG+PSRIEAKYIMR+P+EWDR
Sbjct: 61 AKFVNGKPSRIEAKYIMRNPQEWDR 85
>gi|217075366|gb|ACJ86043.1| unknown [Medicago truncatula]
Length = 83
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 77/82 (93%)
Query: 101 MAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPR 160
MAIF F +PSVFDSSGE+GDITGFYMIDEEG LQSVDV+AKFVNG+PS IEAKYIMR+PR
Sbjct: 1 MAIFRFDQPSVFDSSGEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPR 60
Query: 161 EWDRFMRFMERYANQNGLQFVK 182
+WDRFMRF+ERY++ NGLQF+K
Sbjct: 61 DWDRFMRFVERYSDANGLQFIK 82
>gi|378824580|ref|YP_005089750.1| psb28 gene product (chloroplast) [Synedra acus]
gi|371572779|gb|AEX37875.1| photosystem II protein 28 (chloroplast) [Synedra acus]
Length = 115
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 84/109 (77%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ G+ITG Y+IDEEGTL
Sbjct: 5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTARQGEITGMYLIDEEGTL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
++ DV+A+FVNG+P IE+ YIM+SP +WDRFMRFMERY NGL F K
Sbjct: 65 ETRDVNARFVNGKPEAIESVYIMKSPEDWDRFMRFMERYGQTNGLVFTK 113
>gi|308812414|ref|XP_003083514.1| Photosystem II 13kD Protein, chloroplast precursor (IC)
[Ostreococcus tauri]
gi|122064925|sp|Q00UI6.1|PSB28_OSTTA RecName: Full=Photosystem II reaction center psb28 protein,
chloroplastic; AltName: Full=Photosystem II protein
W-like; Flags: Precursor
gi|116055395|emb|CAL58063.1| Photosystem II 13kD Protein, chloroplast precursor (IC)
[Ostreococcus tauri]
Length = 147
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 97/139 (69%), Gaps = 5/139 (3%)
Query: 45 QSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
+S + R S R S V + +IQF++G +E VP+V+LT+S+DGSNG A F
Sbjct: 14 RSFNASTKRFSKSARRSVV---VRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFF 70
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
FS+P VF++ GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++ +W+R
Sbjct: 71 IFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNR 128
Query: 165 FMRFMERYANQNGLQFVKK 183
FMRFMERYA NGL F KK
Sbjct: 129 FMRFMERYAEDNGLGFSKK 147
>gi|424513642|emb|CCO66264.1| photosystem II reaction center protein Psb28 [Bathycoccus prasinos]
Length = 158
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 85/109 (77%), Gaps = 2/109 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TI F++ + E +VPDVKLTKSRDG++G A F+F P VF+S+ GDITG Y+ DEEG +
Sbjct: 50 TISFVRDSVETSVPDVKLTKSRDGTSGTAFFTFENPDVFESA--TGDITGMYLSDEEGEM 107
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+VDV+AKFVNG+P IEA+YIMRS +EW+RFMRFM RYA NGL F K
Sbjct: 108 TTVDVNAKFVNGKPKCIEARYIMRSSQEWERFMRFMTRYAEDNGLGFNK 156
>gi|330850890|ref|YP_004376640.1| photosystem II subunit [Fistulifera sp. JPCC DA0580]
gi|328835710|dbj|BAK19006.1| photosystem II subunit [Fistulifera sp. JPCC DA0580]
Length = 115
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ TIQFI+G DE +PDV+LT+S DGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEATIQFIKGLDEKVLPDVRLTRSVDGSTGTATFRFKNPNILDKNTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EGTL++ DV+A+FVNGRP IE+ YIM+SP WDRFMRFMERY NGL F K
Sbjct: 61 EGTLETRDVNARFVNGRPEAIESIYIMKSPEAWDRFMRFMERYGRANGLVFTK 113
>gi|299830595|ref|YP_003735043.1| photosystem II subunit [Durinskia baltica]
gi|297384959|gb|ADI40258.1| photosystem II subunit [Durinskia baltica]
Length = 115
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+IDE
Sbjct: 1 MQAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EG L++ DVSA F NG+P IE+ YIM++P+ WDRFMRFMERY N NGL F K
Sbjct: 61 EGILETRDVSAHFSNGKPETIESIYIMKTPKAWDRFMRFMERYGNTNGLVFTK 113
>gi|11467474|ref|NP_043620.1| photosystem II protein W [Odontella sinensis]
gi|1346875|sp|P49508.1|PSB28_ODOSI RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1185169|emb|CAA91652.1| PSII, protein W, 13 kDa [Odontella sinensis]
Length = 115
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+ID+
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EGTL++ DV+A+F+NG+P IE+ YIM+SP WDRFMRFMERY NGL F K
Sbjct: 61 EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113
>gi|303283662|ref|XP_003061122.1| photosystem II 13kD protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226457473|gb|EEH54772.1| photosystem II 13kD protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 151
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 89/123 (72%), Gaps = 3/123 (2%)
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
++V P+ K +IQFI+G +E T PDV+LT+S+DG+NG A F F E +F++ GD
Sbjct: 32 ARVVAPV---AKTSIQFIKGLEETTQPDVRLTRSKDGTNGTAFFIFKESGIFEAPELPGD 88
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
ITG ++ DEEG + +VDV KF NG+P +IEA+Y+M+S EW+RFMRFMERYA NG+ F
Sbjct: 89 ITGMFLTDEEGEISTVDVKCKFSNGKPVQIEAQYVMKSTNEWNRFMRFMERYAEDNGMGF 148
Query: 181 VKK 183
KK
Sbjct: 149 SKK 151
>gi|90994538|ref|YP_537028.1| photosystem II protein W [Pyropia yezoensis]
gi|122064926|sp|Q1XDE0.1|PSB28_PORYE RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|90819102|dbj|BAE92471.1| Photosystem II protein W [Pyropia yezoensis]
Length = 115
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGT 132
TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG
Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + DV+AKF+NG+P IEA ++++SP +WDRFMRFMERYA NGL F K
Sbjct: 63 IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112
>gi|118411055|ref|YP_874450.1| photosystem II subunit [Phaeodactylum tricornutum]
gi|125964827|sp|A0T0H5.1|PSB28_PHATC RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|116739802|gb|ABK20673.1| photosystem II subunit [Phaeodactylum tricornutum]
Length = 115
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+S+DGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EG L++ DV+A+FVNG+P IE+ YIM+SP WDRFMRFMERY NGL F K
Sbjct: 61 EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113
>gi|11465813|ref|NP_053957.1| photosystem II protein W [Porphyra purpurea]
gi|1709848|sp|P51347.1|PSB28_PORPU RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1276813|gb|AAC08233.1| Photosystem II protein W (chloroplast) [Porphyra purpurea]
gi|378787384|gb|AFC40015.1| photosystem II protein W [Porphyra umbilicalis]
Length = 115
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGT 132
TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG
Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + DV+AKF+NG+P IEA ++++SP +WDRFMRFMERYA NGL F K
Sbjct: 63 IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMERYAQDNGLTFTK 112
>gi|11467617|ref|NP_050669.1| photosystem II protein W [Guillardia theta]
gi|6093825|sp|O78418.1|PSB28_GUITH RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|3602942|gb|AAC35603.1| PSII protein W (chloroplast) [Guillardia theta]
Length = 116
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 4/115 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMI 127
MAV IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G+ITG Y+I
Sbjct: 1 MAV---IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLI 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DEEG L + DV+A+FVNG+P IEA YIM+S +WDRFMRFMERY+ NGL F K
Sbjct: 58 DEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112
>gi|118411187|ref|YP_874581.1| photosystem II subunit [Thalassiosira pseudonana]
gi|125964829|sp|A0T0W9.1|PSB28_THAPS RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|116739934|gb|ABK20804.1| photosystem II subunit [Thalassiosira pseudonana]
Length = 114
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+SRDGS G A F F ++ + S + G+ITG YMIDEEG L
Sbjct: 5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGIL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
++ DVSA+FVNG+P +E+ YIM+SP WDRFMRFMERY NGL F K
Sbjct: 65 ETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGLAFTK 113
>gi|299830413|ref|YP_003734628.1| photosystem II protein W [Kryptoperidinium foliaceum]
gi|297385115|gb|ADI40413.1| photosystem II protein W [Kryptoperidinium foliaceum]
Length = 115
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFCFKNPNILDKNTAKKGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFV 181
EG L++ DV+A F NG+P IE+ YIM+SPR WDRFMRFMERY + NGL F
Sbjct: 61 EGILETRDVNAHFRNGKPEIIESIYIMKSPRAWDRFMRFMERYGDTNGLIFT 112
>gi|51209899|ref|YP_063563.1| photosystem II protein W [Gracilaria tenuistipitata var. liui]
gi|75120510|sp|Q6B8Z7.1|PSB28_GRATL RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|50657653|gb|AAT79638.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
Length = 114
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 84/115 (73%), Gaps = 4/115 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMI 127
MAV IQFI+G +E V DV LT+SRDGS G A F F+ P + S E GDITG Y+
Sbjct: 1 MAV---IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLK 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
D+EG L + DVSAKF+NG+P +EA YI++SP+EWDRFMRFME+YAN+N L F K
Sbjct: 58 DDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEKYANENKLSFTK 112
>gi|11467376|ref|NP_043233.1| photosystem II protein W [Cyanophora paradoxa]
gi|1346874|sp|P48264.1|PSB28_CYAPA RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1016177|gb|AAA81264.1| subunit of the water oxidation complex on the lumenal surface of
the photosystem II reaction center complex [Cyanophora
paradoxa]
Length = 112
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 81/108 (75%), Gaps = 2/108 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFIQG DE +PDVKL++S+DG+NG+A F F +P+VFD G+ITG Y+IDEEG L
Sbjct: 4 IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFDVYQ--GEITGLYLIDEEGELS 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ V AKF+NG+P IEA YIM + EW+RF+RFMERYA QN L F K
Sbjct: 62 TRTVYAKFINGKPQSIEASYIMNNREEWERFIRFMERYAKQNDLSFTK 109
>gi|224002100|ref|XP_002290722.1| nuclear copy of photosystem II protein psbW [Thalassiosira
pseudonana CCMP1335]
gi|220974144|gb|EED92474.1| nuclear copy of photosystem II protein psbW, partial [Thalassiosira
pseudonana CCMP1335]
Length = 113
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQF++G +E VP +KLT++RDGS+G+A F+F+ P+VFD S+ G+ITG +++DEEG +
Sbjct: 3 IQFVKGLEEKVVPGIKLTRARDGSSGIATFNFNNPNVFDASTSSQGEITGMFLVDEEGEM 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
++ DV+AKF+NG+P IE+ +M+SP EWDRFMRFMERY NGL F K
Sbjct: 63 RTSDVNAKFLNGKPQSIESVLVMQSPEEWDRFMRFMERYGEANGLGFTK 111
>gi|397619772|gb|EJK65399.1| hypothetical protein THAOC_13743, partial [Thalassiosira oceanica]
Length = 156
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQF++G +E +PD+KL+++RDGS+G+A F+F+ P+VFD S+ G+ITG ++ D EG +
Sbjct: 47 IQFVRGLEEKVIPDIKLSRARDGSSGIATFNFANPNVFDASTASEGEITGMFLADGEGEM 106
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ DV+A+F+NG+P IEA +++SP EWDRFMRFME+Y NGL FVK
Sbjct: 107 STTDVNARFMNGKPQSIEATLVLKSPGEWDRFMRFMEKYGEANGLGFVK 155
>gi|428777607|ref|YP_007169394.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
gi|428691886|gb|AFZ45180.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
Length = 112
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQF +G DE T+PDV+LT+SRDG++G A F F +P V D+ +ITG Y+ID+EG +
Sbjct: 4 TIQFSRGIDEETIPDVRLTRSRDGNSGTATFRFEQPKVLDAES-TQEITGMYLIDDEGII 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ DV KFVNG+P+ +EA + M+S EWDRFMRFMERYA +NGL+F K
Sbjct: 63 STQDVKGKFVNGQPTALEAVHYMKSEEEWDRFMRFMERYAEENGLEFSK 111
>gi|428771393|ref|YP_007163183.1| Photosystem II reaction center Psb28 protein [Cyanobacterium
aponinum PCC 10605]
gi|428685672|gb|AFZ55139.1| Photosystem II reaction center Psb28 protein [Cyanobacterium
aponinum PCC 10605]
Length = 111
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
I+F QG E ++PDV+LT+SRDGSNG A F F + DS G ++TG Y+IDEEG L
Sbjct: 4 IEFAQGVVEESIPDVRLTRSRDGSNGTATFRFESTKILDS-GNTQEVTGMYLIDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG P+ IEA Y++++P EWDRFMRFMERYA +NGL F K
Sbjct: 63 TREVKCKFVNGEPTAIEAIYVIKNPEEWDRFMRFMERYAKENGLGFTK 110
>gi|428209079|ref|YP_007093432.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
gi|428011000|gb|AFY89563.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
Length = 111
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E TVPDV+LT+SRDGSNG A F F P + S G ++TG Y+IDEEG L
Sbjct: 4 IQFSKGVTEETVPDVRLTRSRDGSNGTATFYFQNPQIL-SEGSNEEVTGMYLIDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P IEA Y+M+S EWDRFMRFMERYAN++GL F K
Sbjct: 63 TREVKGKFINGKPEAIEAIYLMKSTEEWDRFMRFMERYANEHGLGFNK 110
>gi|56752420|ref|YP_173121.1| photosystem II reaction center protein Psb28 [Synechococcus
elongatus PCC 6301]
gi|81300488|ref|YP_400696.1| photosystem II reaction center protein Psb28 [Synechococcus
elongatus PCC 7942]
gi|81561262|sp|Q5MZB9.1|PSB28_SYNP6 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|122064931|sp|Q31ML0.1|PSB28_SYNE7 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|56687379|dbj|BAD80601.1| photosystem II reaction center 13 kDa protein [Synechococcus
elongatus PCC 6301]
gi|81169369|gb|ABB57709.1| photosystem II reaction center W protein [Synechococcus elongatus
PCC 7942]
Length = 112
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 80/109 (73%), Gaps = 3/109 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQF +G DE VPDV+LT+SRDG NG A F F EP GE+ DITG Y++D+EG L
Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGEL 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+RYA NGL F +
Sbjct: 63 ATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111
>gi|149072107|ref|YP_001293482.1| photosystem II reaction center protein W [Rhodomonas salina]
gi|134303058|gb|ABO70862.1| photosystem II reaction center protein W [Rhodomonas salina]
Length = 116
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 84/115 (73%), Gaps = 4/115 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS-SGEIGDITGFYMI 127
MAV IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G ITG Y+I
Sbjct: 1 MAV---IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPQVLEAQTTNKGTITGMYLI 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DEEG + + DV+A+FVNG+P IEA +IM+S +WDRFMRFMERY+ NGL F K
Sbjct: 58 DEEGQIVTRDVNARFVNGKPQGIEAVHIMQSKEDWDRFMRFMERYSEDNGLTFTK 112
>gi|290760288|gb|ADD54637.1| photosystem II W protein [Galdieria sulphuraria]
Length = 116
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGT 132
+IQFI G DE +PD+KLT+S+DG G A F F+ P+VF +S + DITG Y+IDEEG
Sbjct: 3 SIQFITGLDEKEIPDIKLTRSKDGKTGTATFIFTNPNVFQKTSKDQADITGMYLIDEEGE 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + +V+AKFVNG+P +IEA YI+++ EWDRFMRFM+RYA + GL F K
Sbjct: 63 MVTREVNAKFVNGKPYKIEALYIIKNNDEWDRFMRFMDRYAKEKGLVFTK 112
>gi|215400731|ref|YP_002327492.1| photosystem II protein [Vaucheria litorea]
gi|194441181|gb|ACF70909.1| photosystem II protein [Vaucheria litorea]
Length = 114
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS-SGEIGDITGFYMIDEEGTL 133
IQFIQG +E+ +P VKLT+S++G+ G A F F+ S+F++ S + G+ITG ++ID EG L
Sbjct: 5 IQFIQGINEINIPRVKLTRSQNGTTGTATFLFTNSSLFNNESSKQGEITGMFLIDNEGIL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ DV+ +F NG+P IEA YIM +P WDRFMRFMERYA +NGL F+KK
Sbjct: 65 TTKDVNVRFKNGQPINIEALYIMTNPTNWDRFMRFMERYAKENGLTFIKK 114
>gi|254416796|ref|ZP_05030545.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
gi|196176342|gb|EDX71357.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
Length = 116
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 80/109 (73%), Gaps = 3/109 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTL 133
IQFI+G DE VPDV+LT+SRDGSNG A F F P + + GE +ITG Y++DEEG L
Sbjct: 9 IQFIKGIDEEVVPDVRLTRSRDGSNGTATFYFDNPKALNGNYGE--EITGIYLMDEEGEL 66
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
S +V KFVNG+P+ +EA IM+S EWDRFMRFMERYA +NGL F K
Sbjct: 67 VSREVKGKFVNGQPTALEAIVIMKSQEEWDRFMRFMERYAEENGLGFSK 115
>gi|434390847|ref|YP_007125794.1| Photosystem II reaction center Psb28 protein [Gloeocapsa sp. PCC
7428]
gi|428262688|gb|AFZ28634.1| Photosystem II reaction center Psb28 protein [Gloeocapsa sp. PCC
7428]
Length = 111
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPDV+LT+SRDGSNG A F F P SS +ITG YMIDEEGT+
Sbjct: 4 IQFFRGVDEEVVPDVRLTRSRDGSNGTATFYFQNPQAL-SSEATEEITGMYMIDEEGTIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P +E Y+M SP EWDRF+RFM+RYA +GL+F K
Sbjct: 63 TREVKGKFVNGKPEALEVFYLMNSPDEWDRFLRFMQRYAETHGLEFSK 110
>gi|397642454|gb|EJK75243.1| hypothetical protein THAOC_03038 [Thalassiosira oceanica]
Length = 271
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQF++G +E +PD+KL+++RDGS+G+A F+F+ P+VFD S+ G+ITG ++ D EG +
Sbjct: 42 IQFVRGLEEKVIPDIKLSRARDGSSGIATFNFANPNVFDASTASEGEITGMFLADGEGEM 101
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ DV+A+F+NG+P IEA +++SP EWDRFMRFME+Y NGL F
Sbjct: 102 STTDVNARFMNGKPQSIEATLVLKSPGEWDRFMRFMEKYGEANGLGF 148
>gi|428780519|ref|YP_007172305.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
gi|428694798|gb|AFZ50948.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
Length = 112
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQF +G DE T+PDV+LT+S+DGS+G A F F P V ++ ++TG Y+IDEEG +
Sbjct: 4 TIQFSRGIDEETIPDVRLTRSKDGSSGTATFRFENPKVLNAESN-QEVTGMYLIDEEGII 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ DV KFVNG+P+ +EA + M+S EWDRFMRFMERYA ++GL+F K
Sbjct: 63 STQDVKGKFVNGQPTALEAVHYMQSEEEWDRFMRFMERYAEEHGLEFSK 111
>gi|209526263|ref|ZP_03274793.1| photosystem II reaction center protein Psb28 [Arthrospira maxima
CS-328]
gi|376007932|ref|ZP_09785114.1| Photosystem II reaction center psb28 protein (Photosystem II
reaction center W protein) (Photosystem II 13 kDa
protein) [Arthrospira sp. PCC 8005]
gi|423062829|ref|ZP_17051619.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
C1]
gi|209493360|gb|EDZ93685.1| photosystem II reaction center protein Psb28 [Arthrospira maxima
CS-328]
gi|375323725|emb|CCE20867.1| Photosystem II reaction center psb28 protein (Photosystem II
reaction center W protein) (Photosystem II 13 kDa
protein) [Arthrospira sp. PCC 8005]
gi|406715785|gb|EKD10938.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
C1]
Length = 111
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF-DSSGEIGDITGFYMIDEEGT 132
+IQF +G DE +PDV+LT+SRDGS G A F F P D + E +ITG Y+IDEEG
Sbjct: 3 SIQFSRGVDEEVIPDVRLTRSRDGSQGTATFRFQNPKALADDATE--EITGMYLIDEEGE 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + +V KF+NG+ + IEA Y+MRSP EWDRFMRFM RYA +NGLQF K
Sbjct: 61 IVTREVKGKFINGKATDIEATYLMRSPEEWDRFMRFMGRYAEENGLQFNK 110
>gi|414878816|tpg|DAA55947.1| TPA: hypothetical protein ZEAMMB73_578027 [Zea mays]
Length = 260
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 73/94 (77%), Gaps = 11/94 (11%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDE 129
A + IQFIQG DE T+PDV+LTKSRD +NG+AIF+F +PSVFDSS E+G ITGFYMID+
Sbjct: 142 AARQAIQFIQGMDEQTIPDVRLTKSRDSTNGVAIFTFEQPSVFDSSAELGAITGFYMIDD 201
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWD 163
EG LQSVDVSAKFVNG+P PREW+
Sbjct: 202 EGVLQSVDVSAKFVNGKP-----------PREWE 224
>gi|22298036|ref|NP_681283.1| photosystem II reaction center protein Psb28 [Thermosynechococcus
elongatus BP-1]
gi|81743716|sp|Q8DLJ8.1|PSB28_THEEB RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|22294214|dbj|BAC08045.1| photosystem II reaction center W protein [Thermosynechococcus
elongatus BP-1]
Length = 116
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M IQFI+G +E VPDV+LT++RDGS+G A+F F P + G + ++TG YM+D
Sbjct: 1 MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIV-QEGNL-EVTGMYMVD 58
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EEG + + DV+AKF+NG+P IEA Y MRSP+EWDRF+RFM+RYA +GL F K
Sbjct: 59 EEGEIVTRDVNAKFINGQPVAIEATYTMRSPQEWDRFIRFMDRYAASHGLGFQK 112
>gi|409994067|ref|ZP_11277188.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
str. Paraca]
gi|291567871|dbj|BAI90143.1| photosystem II Psb28 protein [Arthrospira platensis NIES-39]
gi|409935059|gb|EKN76602.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
str. Paraca]
Length = 111
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF-DSSGEIGDITGFYMIDEEGT 132
+IQF +G DE +PDV+LT+SRDG G A F F P D + E +ITG Y+IDEEG
Sbjct: 3 SIQFSRGVDEEVIPDVRLTRSRDGGQGTATFRFQNPKALADDATE--EITGMYLIDEEGE 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + +V KF+NG+ + IEA Y+MRSP EWDRFMRFM RYA +NGL+F K
Sbjct: 61 ITTREVKGKFINGKATDIEATYLMRSPEEWDRFMRFMSRYAEENGLEFNK 110
>gi|298490112|ref|YP_003720289.1| photosystem II reaction center protein Psb28 ['Nostoc azollae'
0708]
gi|298232030|gb|ADI63166.1| photosystem II reaction center protein Psb28 ['Nostoc azollae'
0708]
Length = 111
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE+ VPDV+LT+SR G G A F F+ P + G +ITG YMIDEEG +
Sbjct: 4 IQFSRGVDEVVVPDVRLTRSRSGDQGTATFIFTNPQIL-GQGSTDEITGMYMIDEEGEIL 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P +EA Y+M++P EW RFMRFMERYA +NGL K
Sbjct: 63 TREVKGKFVNGKPEALEAVYLMKTPEEWTRFMRFMERYAQENGLGLTK 110
>gi|158338648|ref|YP_001519825.1| photosystem II reaction center protein Psb28 [Acaryochloris marina
MBIC11017]
gi|359461817|ref|ZP_09250380.1| photosystem II reaction center protein Psb28 [Acaryochloris sp.
CCMEE 5410]
gi|189037924|sp|B0CE32.1|PSB28_ACAM1 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|158308889|gb|ABW30506.1| photosystem II protein Psb28 PsbW [Acaryochloris marina MBIC11017]
Length = 111
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 2/109 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+++DGS+G AIF F P++ G++ ++ G Y+ DEEG L
Sbjct: 4 AIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLI-QEGKL-EVMGMYLQDEEGEL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
++DVSAKFVNG+P IEA Y M+S EWDRFMRFM RYA +GL F K
Sbjct: 62 TTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNRYAESHGLGFSK 110
>gi|218246061|ref|YP_002371432.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8801]
gi|257059110|ref|YP_003136998.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8802]
gi|226712029|sp|B7K2E0.1|PSB28_CYAP8 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|218166539|gb|ACK65276.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8801]
gi|256589276|gb|ACV00163.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8802]
Length = 114
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PDV+LT+SR G +G A F F EPS+F+S ++TG Y++DEEG +
Sbjct: 4 IQFSRGVAEPVIPDVRLTRSRSGQSGTATFYFREPSIFNSES-TDEVTGMYLVDEEGEIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V KF+NG+ + IEA IMRSP EWDRFMRFMERYA + GL+F
Sbjct: 63 TTEVKGKFINGKATDIEAILIMRSPEEWDRFMRFMERYAKEQGLEF 108
>gi|332708592|ref|ZP_08428566.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
gi|332352689|gb|EGJ32255.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
Length = 111
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPDV+LT+S+ G G A F F++P V+D + +ITG YMIDEEG +
Sbjct: 4 IQFSRGIKEEVVPDVRLTRSKTGQTGSATFIFTKPKVYDKDSK-DEITGMYMIDEEGEIS 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ V+ KFVNG P IEA YIM+SP EWDRFMRFMERY+ +N L F K
Sbjct: 63 TSKVNGKFVNGEPMAIEATYIMKSPEEWDRFMRFMERYSEENDLGFTK 110
>gi|427717042|ref|YP_007065036.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
7507]
gi|427349478|gb|AFY32202.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
7507]
Length = 112
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PD++LT+SR G NG A F F P S DITG Y++DEEG L
Sbjct: 4 IQFSRGIDENVIPDIRLTRSRSGENGTATFVFVNPQALSQSNS-DDITGMYLLDEEGELI 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKFVNG+P +EA Y+M++ EWDRFMRFMERYA++NGL K
Sbjct: 63 TREVKAKFVNGKPEALEAVYLMKTAEEWDRFMRFMERYADENGLGLSK 110
>gi|334118295|ref|ZP_08492385.1| Photosystem II reaction center Psb28 protein [Microcoleus vaginatus
FGP-2]
gi|333460280|gb|EGK88890.1| Photosystem II reaction center Psb28 protein [Microcoleus vaginatus
FGP-2]
Length = 111
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VP+V+LT+S+ G+ G A F F P SS DITG YMIDEEG +
Sbjct: 4 IQFSRGIDEDAVPEVRLTRSKTGAQGTATFIFENPKAL-SSTSTEDITGMYMIDEEGEIL 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKF+NG+P+ +EA Y+MR+P EWDRFMRFMERY+ NGL F K
Sbjct: 63 TREVKAKFINGQPAGLEALYLMRNPAEWDRFMRFMERYSEANGLGFSK 110
>gi|30468121|ref|NP_849008.1| photosystem II protein W [Cyanidioschyzon merolae strain 10D]
gi|75272356|sp|Q85G21.1|PSB28_CYAME RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|30409221|dbj|BAC76170.1| photosystem II protein W (chloroplast) [Cyanidioschyzon merolae
strain 10D]
Length = 109
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQFIQG DE +P V+LT+SRDG G A+F F +P + GEI TG YMIDEEG +
Sbjct: 3 SIQFIQGVDEDIIPTVRLTRSRDGQTGTAVFRFVQPKLLQQQGEI---TGMYMIDEEGEI 59
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V AKFVNG+P IEA Y+M++ + W+RFMRFM RYA GL F
Sbjct: 60 VTREVQAKFVNGQPQIIEALYVMKNAQAWERFMRFMNRYAEAKGLSF 106
>gi|189095323|ref|YP_001936336.1| photosystem II protein W [Heterosigma akashiwo]
gi|157694666|gb|ABV65942.1| photosystem II protein psb28 [Heterosigma akashiwo]
gi|157777897|gb|ABV70083.1| photosystem II protein psb28 [Heterosigma akashiwo]
Length = 119
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G DE +P++KLT+SRDGS G A F F++P + D + E G+ITG Y+IDE
Sbjct: 1 MKAKIQFIKGIDEEVIPNIKLTRSRDGSTGTATFLFTQPMILDKTMSEQGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EG + +V+A+F NG P IEA +IM++ WDRFMRFMERY+ N L F K
Sbjct: 61 EGEQVTREVNARFRNGNPETIEAIFIMKNRESWDRFMRFMERYSLSNELTFTK 113
>gi|315320557|ref|YP_004072614.1| photosystem II reaction center protein W [Thalassiosira oceanica
CCMP1005]
gi|283569030|gb|ADB27567.1| photosystem II reaction center protein W [Thalassiosira oceanica
CCMP1005]
Length = 114
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDE 129
+K IQFI+GT+E +PD++LT+SRDGS G A F F ++ D S + G+ITG YMID
Sbjct: 1 MKARIQFIKGTNENILPDIRLTRSRDGSTGTATFRFKNANILDKSLALNGEITGMYMIDI 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EG L++ DV+A F+ G+P ++A YIM+S EW+RFMRFM+RY+ N L F K
Sbjct: 61 EGILETRDVTACFIKGKPKAVQAIYIMKSSDEWNRFMRFMKRYSQGNDLVFTK 113
>gi|440681196|ref|YP_007155991.1| Photosystem II reaction center Psb28 protein [Anabaena cylindrica
PCC 7122]
gi|428678315|gb|AFZ57081.1| Photosystem II reaction center Psb28 protein [Anabaena cylindrica
PCC 7122]
Length = 111
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + + G +ITG YMIDEEG +
Sbjct: 4 IQFSKGVDEEVIPEVRLTRSRSGDQGTATFIFTNPQIL-AQGSNEEITGMYMIDEEGEMI 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGL 178
+ +V KFVNG+P +EA Y+M++P EWDRFMRFM+RYAN+NGL
Sbjct: 63 TREVKGKFVNGKPEALEAIYLMKTPEEWDRFMRFMDRYANENGL 106
>gi|428316542|ref|YP_007114424.1| Photosystem II reaction center Psb28 protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428240222|gb|AFZ06008.1| Photosystem II reaction center Psb28 protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 111
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VP+V+LT+S+ G G A F+F P SS DITG YMID+EG L
Sbjct: 4 IQFSRGIDEDAVPEVRLTRSKSGEQGTATFTFENPKALSSSS-TEDITGMYMIDDEGELL 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKF+NG+P+ +EA YIM+S EWDRFMRFMERY+ NGL F K
Sbjct: 63 TREVKAKFINGQPAGLEAVYIMKSTAEWDRFMRFMERYSEANGLGFSK 110
>gi|411117253|ref|ZP_11389740.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
gi|410713356|gb|EKQ70857.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
Length = 112
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+++DGSNG A F F P SS +ITG Y+ID+EG +
Sbjct: 5 IQFARGIDEEIIPNVRLTRAKDGSNGTATFYFQNPKAL-SSNMTEEITGMYLIDDEGEIS 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKFVNG+P IEA Y+M+S EWDRF+RFMERYA +N L F K
Sbjct: 64 TREVKAKFVNGQPDAIEAVYLMKSASEWDRFIRFMERYAEENDLGFTK 111
>gi|186684071|ref|YP_001867267.1| photosystem II reaction center protein Psb28 [Nostoc punctiforme
PCC 73102]
gi|226712031|sp|B2J5G7.1|PSB28_NOSP7 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|186466523|gb|ACC82324.1| photosystem II protein PsbW, class I [Nostoc punctiforme PCC 73102]
Length = 113
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE+ +P+V+LT+SR G +G A F F+ P + D G DITG Y+ DEEG +
Sbjct: 4 IQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQ-GSTEDITGMYLSDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKFVNG+P +EA Y+M+S +EWDRFMRFMERYA +N L K
Sbjct: 63 TREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFMERYAEENDLGLSK 110
>gi|428201030|ref|YP_007079619.1| photosystem II reaction center protein Psb28 [Pleurocapsa sp. PCC
7327]
gi|427978462|gb|AFY76062.1| photosystem II reaction center protein Psb28 [Pleurocapsa sp. PCC
7327]
Length = 111
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +P+V+L++ R+G NGMA F F P++F S+ +ITG Y+IDEEG +
Sbjct: 4 IQFARGVTEEAIPEVRLSRDRNGQNGMAKFYFDSPNIF-SNDSREEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P +EA +M SP+EWDRFMRFMERYA + GLQF K
Sbjct: 63 TREVKGKFINGKPEAVEAVVVMNSPQEWDRFMRFMERYAQEKGLQFTK 110
>gi|428304944|ref|YP_007141769.1| Photosystem II reaction center Psb28 protein [Crinalium epipsammum
PCC 9333]
gi|428246479|gb|AFZ12259.1| Photosystem II reaction center Psb28 protein [Crinalium epipsammum
PCC 9333]
Length = 111
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF G E VPDV+LT+SRDGS+G A F F P D+ ++TG YMIDEEG L
Sbjct: 4 IQFSIGVTEDVVPDVRLTRSRDGSHGTATFYFENPKALDND-RTDEVTGMYMIDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKFVNG+P +EA Y+M+S EW+RFMRFMERYA +N L F K
Sbjct: 63 TREVKAKFVNGKPEALEAVYLMKSQAEWERFMRFMERYAEKNDLGFSK 110
>gi|428308683|ref|YP_007119660.1| photosystem II reaction center protein Psb28 [Microcoleus sp. PCC
7113]
gi|428250295|gb|AFZ16254.1| photosystem II reaction center protein Psb28 [Microcoleus sp. PCC
7113]
Length = 112
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PDV+LT+SRDGSNG A F F P DS+ +ITG Y+IDEEG +
Sbjct: 4 IQFSRGIDEEVIPDVRLTRSRDGSNGTATFIFENPKALDSNS-TEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P+ +EA +++S EWDRFMRFMERYA ++GL F +
Sbjct: 63 TREVKGKFVNGQPTALEAFVLIKSQDEWDRFMRFMERYAQEHGLGFTQ 110
>gi|427725085|ref|YP_007072362.1| Photosystem II reaction center Psb28 protein [Leptolyngbya sp. PCC
7376]
gi|427356805|gb|AFY39528.1| Photosystem II reaction center Psb28 protein [Leptolyngbya sp. PCC
7376]
Length = 111
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 8/116 (6%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF--DSSGEIGDITGFYM 126
MAV IQF QG DE +PD+++T+++DGS G A+F+F +P+ DS+ EI TG Y+
Sbjct: 1 MAV---IQFSQGIDEPEIPDIRVTRAQDGSTGTAVFTFEDPAALAQDSTDEI---TGMYL 54
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
IDEEG + + +V KF +G+ IEA+ IMRSP EW+RF+RFMERY QNGL+F K
Sbjct: 55 IDEEGEIITREVKGKFYDGKARVIEARLIMRSPEEWERFLRFMERYGKQNGLEFTK 110
>gi|170077874|ref|YP_001734512.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7002]
gi|226712033|sp|B1XL01.1|PSB28_SYNP2 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|169885543|gb|ACA99256.1| Photosystem II reaction center W protein [Synechococcus sp. PCC
7002]
Length = 111
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG +E VP ++LT+S DGS G A+FSF +P+ + +ITG Y+IDEEG +
Sbjct: 4 IQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAAL-AQESTDEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKF +G+P IEA+ +MRS EWDRFMRFMERYA +NGL+F K
Sbjct: 63 TREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMERYAAENGLEFTK 110
>gi|428772638|ref|YP_007164426.1| photosystem II reaction center protein Psb28 [Cyanobacterium
stanieri PCC 7202]
gi|428686917|gb|AFZ46777.1| photosystem II reaction center protein Psb28 [Cyanobacterium
stanieri PCC 7202]
Length = 111
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
I+F +G E ++PDVK+T++RDGSNG A F F E + +S G +TG Y+ DEEG L
Sbjct: 4 IEFTKGIIEESIPDVKITRARDGSNGTATFRFEESPILES-GNTQAVTGMYLTDEEGELS 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG P +EA Y+M+S EWDRFMRFMERYA ++GL F K
Sbjct: 63 TREVKCKFINGEPVALEAIYVMKSVEEWDRFMRFMERYAEEHGLGFTK 110
>gi|67925021|ref|ZP_00518404.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|416407009|ref|ZP_11688228.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
gi|67853139|gb|EAM48515.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|357260942|gb|EHJ10266.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
Length = 111
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PD++LT+ + G +G A F F P +FD+ DITG Y++DEEG +
Sbjct: 4 IQFSRGVSETVIPDIRLTRGKKGDSGTATFRFDSPKIFDAQS-TDDITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P+ IEA IM S EWDRFMRFMERY +NGL+FVK
Sbjct: 63 TNEVKGKFVNGKPTSIEAFLIMNSQDEWDRFMRFMERYGKENGLEFVK 110
>gi|428226568|ref|YP_007110665.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
gi|427986469|gb|AFY67613.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
Length = 111
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 5/110 (4%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPS--VFDSSGEIGDITGFYMIDEEGT 132
IQF G E +PDV+LT++RDGS+G A F F P V +S+ EI TG Y++DEEG
Sbjct: 4 IQFSPGVSEAVIPDVRLTRARDGSSGTATFYFERPQALVGESNAEI---TGMYLVDEEGQ 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + +V AKF+NG+P +EA YIMRS EWDRFMRFMERYA ++GL F K
Sbjct: 61 VMTREVKAKFINGQPEALEATYIMRSSEEWDRFMRFMERYAEEHGLGFSK 110
>gi|282899563|ref|ZP_06307527.1| Photosystem II protein PsbW, class I [Cylindrospermopsis
raciborskii CS-505]
gi|281195442|gb|EFA70375.1| Photosystem II protein PsbW, class I [Cylindrospermopsis
raciborskii CS-505]
Length = 112
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +GTDE VPDV+LT+SR G G A F+F P + G ITG YMIDEEG +
Sbjct: 3 SIQFSKGTDEKVVPDVRLTRSRSGDQGTATFTFVNPDIL-QEGNTDGITGMYMIDEEGEI 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P +EA Y++++ +EWDRFMRFM RYA +NGL K
Sbjct: 62 VTREVRGKFVNGKPEAVEAVYLIKTSQEWDRFMRFMNRYAEENGLGLSK 110
>gi|75906816|ref|YP_321112.1| photosystem II reaction center protein Psb28 [Anabaena variabilis
ATCC 29413]
gi|122064923|sp|Q3MFL9.1|PSB28_ANAVT RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|75700541|gb|ABA20217.1| Photosystem II protein PsbW, class I [Anabaena variabilis ATCC
29413]
Length = 111
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG +
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNGRP +EA Y+M+S +EW+RF+RFMERYA +N L F K
Sbjct: 63 TREVKGKFVNGRPEGVEAVYVMKSAQEWERFIRFMERYAQENDLGFSK 110
>gi|434388347|ref|YP_007098958.1| photosystem II reaction center protein Psb28 [Chamaesiphon minutus
PCC 6605]
gi|428019337|gb|AFY95431.1| photosystem II reaction center protein Psb28 [Chamaesiphon minutus
PCC 6605]
Length = 112
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GT E VPDV+LTKSR G G A F F +P++ + ++TG YMIDEEG +
Sbjct: 4 IQFSRGTTEPVVPDVRLTKSRTGEQGKASFYFEKPAILGNDV-TEEVTGLYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKFVNG+P +EA YIM S EWDRFMRFMERY+ NGL F K
Sbjct: 63 TREVKAKFVNGKPEALEAIYIMNSTAEWDRFMRFMERYSEANGLGFTK 110
>gi|282897580|ref|ZP_06305580.1| Photosystem II protein PsbW, class I [Raphidiopsis brookii D9]
gi|281197503|gb|EFA72399.1| Photosystem II protein PsbW, class I [Raphidiopsis brookii D9]
Length = 112
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +GTDE VPDV+LT+SR G G A F+F P + G ITG YMIDEEG +
Sbjct: 3 SIQFSKGTDEKVVPDVRLTRSRSGDQGTATFTFVNPDIV-KEGNTDGITGMYMIDEEGEI 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P +EA Y++++ +EWDRFMRFM RYA +NGL K
Sbjct: 62 VTREVRGKFVNGKPEAVEAVYLIKTSQEWDRFMRFMNRYAEENGLGLSK 110
>gi|119490017|ref|ZP_01622641.1| photosystem II reaction center 13 kDa protein [Lyngbya sp. PCC
8106]
gi|119454169|gb|EAW35321.1| photosystem II reaction center 13 kDa protein [Lyngbya sp. PCC
8106]
Length = 133
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
+ TIQF +G DE +P+V+LT+SRD + G A F F P ++ +ITG Y+IDEE
Sbjct: 22 IMATIQFAKGIDEDVIPNVRLTRSRDNTQGTATFYFDNPKAL-ANDFAEEITGMYLIDEE 80
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
G L + +V AKFVNG+P IEA Y+M+S EW+RFMRFM RYA NGL+F K
Sbjct: 81 GELLTREVKAKFVNGKPEAIEAFYLMQSEEEWNRFMRFMNRYAEANGLEFSK 132
>gi|427728794|ref|YP_007075031.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
gi|427364713|gb|AFY47434.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
Length = 111
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G +G A F F+ P + S G +ITG Y+IDEEG L
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDSGTATFIFTNPKIL-SQGSTEEITGMYLIDEEGELI 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V +FVNG+P +EA Y+M+S EWDRFMRFMERYA +N L F K
Sbjct: 63 TREVKGRFVNGKPEALEAVYLMKSSEEWDRFMRFMERYAEENDLGFSK 110
>gi|354565723|ref|ZP_08984897.1| Photosystem II reaction center Psb28 protein [Fischerella sp.
JSC-11]
gi|353548596|gb|EHC18041.1| Photosystem II reaction center Psb28 protein [Fischerella sp.
JSC-11]
Length = 111
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G +G A F F P DS G DITG YMIDEEG +
Sbjct: 4 IQFSKGIDEEVIPEVRLTRSRTGDSGTATFIFQNPKALDS-GNTEDITGMYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V +FVNG+P +EA Y+M+S +WDRFMRFM+RYA +N L F K
Sbjct: 63 TREVKGRFVNGKPEALEAVYLMKSKEQWDRFMRFMQRYAEENDLGFNK 110
>gi|17228296|ref|NP_484844.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7120]
gi|81772834|sp|Q8YYP5.1|PSB28_ANASP RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|17130146|dbj|BAB72758.1| photosystem II protein W [Nostoc sp. PCC 7120]
Length = 111
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG +
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NGRP +EA Y+M+S +EW+RF+RFMERYA +N L F K
Sbjct: 63 TREVKGKFINGRPEGLEAVYVMKSAQEWERFIRFMERYAQENDLGFSK 110
>gi|300866289|ref|ZP_07110996.1| Photosystem II reaction center Psb28 protein [Oscillatoria sp. PCC
6506]
gi|300335708|emb|CBN56156.1| Photosystem II reaction center Psb28 protein [Oscillatoria sp. PCC
6506]
Length = 111
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PDV+LT+S+ G+ G A F+F P +S +ITG YMIDEEG +
Sbjct: 4 IQFSRGIDEDVIPDVRLTRSKTGNQGTATFTFENPKALSNSS-TEEITGMYMIDEEGEIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V AKF+NG+P+ +EA Y+M+S +WDRFMRFMERY+ ++GL F K
Sbjct: 63 TREVKAKFINGQPASLEALYLMKSVEDWDRFMRFMERYSEEHGLGFSK 110
>gi|11465484|ref|NP_045125.1| photosystem II protein W [Cyanidium caldarium]
gi|14195103|sp|Q9TLZ2.1|PSB28_CYACA RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|6466387|gb|AAF12969.1|AF022186_92 unknown [Cyanidium caldarium]
Length = 115
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF---DSSGEIGDITGFYMIDEEG 131
IQFI+G DE TVP+++LT+SRDG+ G AIFSF P+VF SS G+ITG Y+ D+EG
Sbjct: 4 IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEG 63
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
L + +V+A FVNG+P +EA Y++R+ WDR MRF+ +YA + F K
Sbjct: 64 ELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMRFINKYAEDKNMSFYK 114
>gi|376403749|ref|YP_005090110.1| psb28 gene product (chloroplast) [Fucus vesiculosus]
gi|269991312|emb|CAX12496.1| photosystem II subunit [Fucus vesiculosus]
Length = 118
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G +E T+P + +T+S DG+ G A F F + S+F + +ITG ++ID+
Sbjct: 1 MKAVIQFIKGIEETTIPIINITRSPDGTTGTATFIFEDASLFYTGINSQNEITGMFLIDK 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EGTL + D++AKF+ G+P ++A YIM++ WDRFMRFMERY++QN L F+K
Sbjct: 61 EGTLSTRDINAKFIQGKPKTLQAVYIMKNAEAWDRFMRFMERYSDQNNLTFIK 113
>gi|428211216|ref|YP_007084360.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
gi|427999597|gb|AFY80440.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
Length = 111
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPDV+LT+S+DG G A F F P++ D +ITG Y++DEEG +
Sbjct: 4 IQFSRGIKEEVVPDVRLTRSKDGKQGTATFYFKNPAILDKDS-TDEITGMYLLDEEGEIA 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DV KFVNG+ IEA ++M+S +WDRFMRFMERYA +NGL F K
Sbjct: 63 CRDVKGKFVNGQADGIEATHVMKSQADWDRFMRFMERYAKENGLGFSK 110
>gi|434406781|ref|YP_007149666.1| photosystem II reaction center protein Psb28 [Cylindrospermum
stagnale PCC 7417]
gi|428261036|gb|AFZ26986.1| photosystem II reaction center protein Psb28 [Cylindrospermum
stagnale PCC 7417]
Length = 111
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPDV+LT+SR G G A F F+ P++ S ++TG YMIDEEG +
Sbjct: 4 IQFSRGIDEEVVPDVRLTRSRSGDQGTATFIFTNPTILGQSS-TEEVTGMYMIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P +EA +M++P EW+RFMRFMERYA NGL K
Sbjct: 63 TREVKGKFVNGKPEALEALVLMKTPEEWERFMRFMERYAKDNGLGLSK 110
>gi|443312134|ref|ZP_21041754.1| photosystem II reaction center protein Psb28 [Synechocystis sp. PCC
7509]
gi|442777812|gb|ELR88085.1| photosystem II reaction center protein Psb28 [Synechocystis sp. PCC
7509]
Length = 111
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE P+V+LT+SRDG A F F PSV S DITG YMIDEEG +
Sbjct: 4 IQFSKGVDEDVTPNVRLTRSRDGKQSTATFLFQNPSVL-SGNNADDITGMYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P +E YIM S EWDRF+RFMERYA +N L F K
Sbjct: 63 TREVKGKFVNGKPEALEVFYIMNSTAEWDRFLRFMERYAEKNDLDFNK 110
>gi|159903261|ref|YP_001550605.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9211]
gi|226712032|sp|A9B9Y9.1|PSB28_PROM4 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|159888437|gb|ABX08651.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9211]
Length = 117
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
+ P IQF +G DE +P+++LT+S+DG G AIF F +P S GDITG +ID+E
Sbjct: 6 INPAIQFYEGVDETAIPEIRLTRSKDGKTGQAIFVFQKPDAL-SEATTGDITGMTLIDDE 64
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
G L++ +V A+F+NG PS IEA Y ++ +++RFMRF ERYA +NGL + K
Sbjct: 65 GALKTREVKARFLNGEPSAIEATYTWKTESDFERFMRFAERYAKKNGLGYSSK 117
>gi|427420545|ref|ZP_18910728.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7375]
gi|425756422|gb|EKU97276.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7375]
Length = 110
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG E +PDV+LT+++DGS+G A F F +P G ++TG Y++DEEG +
Sbjct: 4 IQFSQGVAEEVIPDVRLTRAKDGSDGTATFYFDKPKALIEEG--SEVTGLYLVDEEGMMT 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
S +V+AKF+NG P+ +EA+ +++S EWDRFMRFM RYA + GL F K
Sbjct: 62 SREVNAKFINGAPAGLEARILLKSRDEWDRFMRFMNRYAEEKGLGFTK 109
>gi|126657299|ref|ZP_01728458.1| photosystem II 13 kD protein [Cyanothece sp. CCY0110]
gi|172036514|ref|YP_001803015.1| photosystem II reaction center protein Psb28 [Cyanothece sp. ATCC
51142]
gi|354553297|ref|ZP_08972604.1| Photosystem II reaction center Psb28 protein [Cyanothece sp. ATCC
51472]
gi|254783428|sp|B1WXW2.1|PSB28_CYAA5 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|126621286|gb|EAZ91998.1| photosystem II 13 kD protein [Cyanothece sp. CCY0110]
gi|171697968|gb|ACB50949.1| photosystem II 13 kD protein [Cyanothece sp. ATCC 51142]
gi|353555127|gb|EHC24516.1| Photosystem II reaction center Psb28 protein [Cyanothece sp. ATCC
51472]
Length = 111
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+LT+++ G++G A F F P++ D+ DITG Y++DEEG +
Sbjct: 4 IQFSRGVSEPVVPEVRLTRAKSGNSGTATFRFESPTILDAES-TDDITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P+ +EA IM S EWDRFMRFMERYA +NGL F K
Sbjct: 63 TREVKGKFINGKPTSVEAILIMNSQDEWDRFMRFMERYAQENGLGFSK 110
>gi|428221102|ref|YP_007105272.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7502]
gi|427994442|gb|AFY73137.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7502]
Length = 113
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 78/109 (71%), Gaps = 2/109 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMIDEEGTL 133
IQ +G DE V DV+LT+++DGSNG A F F +P + + + + DITG +M DEEG L
Sbjct: 5 IQLTRGIDE-DVSDVRLTRAKDGSNGTATFIFKDPKCTNEANKALTDITGMFMTDEEGEL 63
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V+AKF+NG+P+ IEA YI+ SP+ WDRFMRFM RYA NG+ F K
Sbjct: 64 VTRNVNAKFINGKPAGIEAVYIIDSPQAWDRFMRFMNRYAEANGMGFNK 112
>gi|428300812|ref|YP_007139118.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
6303]
gi|428237356|gb|AFZ03146.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
6303]
Length = 110
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PDV+LT+SR G +G A F F P D++ +ITG YMIDEEG +
Sbjct: 4 IQFSKGITEEVIPDVRLTRSRSGESGTATFFFQNPRALDATS-TEEITGMYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V KFVNG+ +EA +IM+S EWDRFMRFMERYA QNGL
Sbjct: 63 TREVKGKFVNGKADALEALHIMKSVEEWDRFMRFMERYAEQNGLDL 108
>gi|254422407|ref|ZP_05036125.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7335]
gi|196189896|gb|EDX84860.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7335]
Length = 110
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++LT+++D S+G A F F +P G G++TG YM+DEEG L
Sbjct: 4 IQFSRGVKEEVVPDIRLTRAKDLSDGTATFYFDKPKALVEEG--GEVTGMYMVDEEGELS 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGL 178
+ DV+ KFVNG PS IEA ++MR EWDRFMRFM+RYA +GL
Sbjct: 62 TRDVNGKFVNGEPSGIEAVFVMRGQDEWDRFMRFMDRYAADHGL 105
>gi|293651705|pdb|2KVO|A Chain A, Solution Nmr Structure Of Photosystem Ii Reaction Center
Psb28 Protein From Synechocystis Sp.(Strain Pcc 6803),
Northeast Structural Genomics Consortium Target Sgr171
Length = 120
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+L+KS++G +GMA F F EP++ + DITG Y+ID+EG +
Sbjct: 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NGRP+ IEA I+ S EWDRFMRFMERY +NGL F K
Sbjct: 63 TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENGLGFSK 110
>gi|403066642|ref|YP_006639131.1| photosystem II reaction center protein W (chloroplast) [Saccharina
japonica]
gi|378787555|gb|AFC40185.1| photosystem II reaction center protein W (chloroplast) [Saccharina
japonica]
Length = 114
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G +E T+P + +T+S DG+ G A F F + S+F + +ITG ++ID+
Sbjct: 1 MKAIIQFIKGVEETTIPTINITRSTDGTTGTATFIFEDASLFYTVVNPESEITGMFLIDK 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EGTL + D++AKF+ G+P ++A YIM++ WDRFMRFMERY+++N L F +
Sbjct: 61 EGTLSTKDLNAKFIEGKPKTLQALYIMKNAEAWDRFMRFMERYSDENNLTFTR 113
>gi|16329210|ref|NP_439938.1| photosystem II reaction center protein Psb28 [Synechocystis sp. PCC
6803]
gi|383320949|ref|YP_005381802.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324119|ref|YP_005384972.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490003|ref|YP_005407679.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384435269|ref|YP_005649993.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803]
gi|451813369|ref|YP_007449821.1| photosystem II 13 kD protein [Synechocystis sp. PCC 6803]
gi|3334306|sp|Q55356.3|PSB28_SYNY3 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1183850|dbj|BAA11641.1| 13 kDa protein of photosystem II [Synechocystis sp. PCC 6803]
gi|1651690|dbj|BAA16618.1| photosystem II 13 kD protein [Synechocystis sp. PCC 6803]
gi|339272301|dbj|BAK48788.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803]
gi|359270268|dbj|BAL27787.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359273439|dbj|BAL30957.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359276609|dbj|BAL34126.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407957077|dbj|BAM50317.1| photosystem II reaction center protein Psb28 [Bacillus subtilis
BEST7613]
gi|451779338|gb|AGF50307.1| photosystem II 13 kD protein [Synechocystis sp. PCC 6803]
Length = 112
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+L+KS++G +GMA F F EP++ + DITG Y+ID+EG +
Sbjct: 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NGRP+ IEA I+ S EWDRFMRFMERY +NGL F K
Sbjct: 63 TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMERYGAENGLGFSK 110
>gi|318041305|ref|ZP_07973261.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CB0101]
Length = 123
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
IQF +G DE VPD+++T+SRDG G AIF F +P S +GDI G YM+DEEG L
Sbjct: 3 AIQFFRGVDEPVVPDIRMTRSRDGRTGQAIFVFDQPEAL-SPESMGDIGGMYMVDEEGQL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V+AKFVNG+P+ +EA Y ++P +++RFMRF +RYA+ + L F +K
Sbjct: 62 VTREVNAKFVNGKPAALEATYTWKTPEDFERFMRFAQRYADSHDLGFSQK 111
>gi|194476724|ref|YP_002048903.1| putative photosystem II reaction center Psb28 [Paulinella
chromatophora]
gi|171191731|gb|ACB42693.1| putative photosystem II reaction center Psb28 [Paulinella
chromatophora]
Length = 124
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQF +G DEL +PD+++T+SRDG G A F F +P + +G+ITG +MIDEEG L
Sbjct: 3 TIQFFRGVDELVLPDIRMTRSRDGRTGQATFRFEQPVAL-APETLGNITGMFMIDEEGEL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V A FVNG+PS +EA Y +S +++RFMRF +RYA+ NGL + +K
Sbjct: 62 ITREVKASFVNGKPSALEATYTWKSESDFERFMRFAQRYADDNGLGYSQK 111
>gi|427735069|ref|YP_007054613.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
gi|427370110|gb|AFY54066.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
Length = 113
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G +E +P+V+LT+SR G +G A F F+ P D G +ITG YM+DEEG +
Sbjct: 4 IQFSRGVNEEVIPEVRLTRSRSGDSGTATFIFTNPKALDE-GSTDEITGMYMVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P +EA Y+M+S EW+RFMRFMERYA +N L K
Sbjct: 63 TREVKGKFINGKPEALEAIYLMKSAEEWERFMRFMERYAEENELGLDK 110
>gi|427706029|ref|YP_007048406.1| Photosystem II reaction center Psb28 protein [Nostoc sp. PCC 7107]
gi|427358534|gb|AFY41256.1| Photosystem II reaction center Psb28 protein [Nostoc sp. PCC 7107]
Length = 111
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PDV+LT+SR G G A F F+ P + S ++TG YM+DEEG +
Sbjct: 4 IQFSRGLDENVLPDVRLTRSRSGDTGTATFIFTNPKILSQSSS-EEVTGMYMLDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V A+FVNG+ +EA +IM+S EWDRF+RFMER+A NGL+F K
Sbjct: 63 TREVKARFVNGKAEALEAVHIMKSADEWDRFIRFMERFAQANGLEFSK 110
>gi|87302778|ref|ZP_01085589.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 5701]
gi|87282661|gb|EAQ74619.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 5701]
Length = 133
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
IQF +G DE +PD++LT+SRDG G A+F F +P +GDITG +++DEEG L
Sbjct: 3 AIQFFRGVDEPVIPDIRLTRSRDGRTGQALFVFEQPQALAPEA-MGDITGMFLLDEEGEL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V A+FVNG+PS +EA Y ++ ++DRFMRF ERYA +GL F +K
Sbjct: 62 VTREVKARFVNGKPSALEATYTWKTEADFDRFMRFAERYAAGHGLGFAEK 111
>gi|113476038|ref|YP_722099.1| photosystem II reaction center protein Psb28 [Trichodesmium
erythraeum IMS101]
gi|110167086|gb|ABG51626.1| photosystem II protein PsbW, class I [Trichodesmium erythraeum
IMS101]
Length = 120
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 75/111 (67%), Gaps = 5/111 (4%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF--DSSGEIGDITGFYMIDEEG 131
TIQFIQG DE P+V+LT+SR G+ G A F +P D + EI TG YMIDEEG
Sbjct: 10 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEI---TGMYMIDEEG 66
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ S DV A+FVNG+P +E Y+M++ +EW+RFMRFME YA ++ L F K
Sbjct: 67 QITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKK 117
>gi|443323027|ref|ZP_21052038.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
gi|442787208|gb|ELR96930.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
Length = 111
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG E T+P+V+LT+S +G +G A F F P DS +ITG Y++DEEG +
Sbjct: 4 IQFTQGIIEETIPNVRLTRSANGQSGTATFYFDLPKALDSDN-TEEITGMYLVDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+ +EA Y+M++P +W+RFMRFM RYA ++GL+F K
Sbjct: 63 TREVKGKFVNGKAQALEAIYVMKTPEQWERFMRFMARYAEESGLEFTK 110
>gi|425439965|ref|ZP_18820276.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9717]
gi|389719699|emb|CCH96504.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9717]
Length = 112
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAKFYFEQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P+ IEA I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPTAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|122064935|sp|Q112E8.2|PSB28_TRIEI RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
Length = 113
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 75/111 (67%), Gaps = 5/111 (4%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF--DSSGEIGDITGFYMIDEEG 131
TIQFIQG DE P+V+LT+SR G+ G A F +P D + EI TG YMIDEEG
Sbjct: 3 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEI---TGMYMIDEEG 59
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ S DV A+FVNG+P +E Y+M++ +EW+RFMRFME YA ++ L F K
Sbjct: 60 QITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFMESYAKEHDLGFKK 110
>gi|422304385|ref|ZP_16391731.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9806]
gi|389790447|emb|CCI13652.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9806]
Length = 112
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFEQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P+ IEA I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPTAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|443317023|ref|ZP_21046446.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
6406]
gi|442783363|gb|ELR93280.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
6406]
Length = 111
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
I+F +G E +PDV++T+S+DGSNG A F F P S E ++TG Y++DEEG +
Sbjct: 4 IEFARGVVEEVIPDVRMTRSKDGSNGTATFYFEYPKAL-SQDEGVEVTGMYLVDEEGEMV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ DV+ KF+NG P+ IEA Y ++S +W+RFMRFM RYA +NGL F K
Sbjct: 63 TRDVNGKFINGEPAGIEATYSIKSLADWERFMRFMNRYAEENGLGFTK 110
>gi|166368180|ref|YP_001660453.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa NIES-843]
gi|425464851|ref|ZP_18844161.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9809]
gi|226712030|sp|B0JGJ5.1|PSB28_MICAN RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|166090553|dbj|BAG05261.1| photosystem II reaction center 13 kDa protein [Microcystis
aeruginosa NIES-843]
gi|389833024|emb|CCI22854.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9809]
Length = 112
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAEFYFKQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ V KF+NG+P IEA I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TTKVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|269101016|ref|YP_003289164.1| Photosystem II reaction center protein W [Ectocarpus siliculosus]
gi|266631524|emb|CAV31195.1| Photosystem II reaction center protein W [Ectocarpus siliculosus]
gi|270118654|emb|CAT18706.1| Photosystem II reaction center protein W [Ectocarpus siliculosus]
Length = 114
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G +E T+P + +T+S DG+ G A F F + S+F + +I+G ++ID+
Sbjct: 1 MKAIIQFIKGVEETTIPTINITRSTDGTTGTATFIFEDASLFYTGINPESEISGMFLIDK 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EG L + D++AKF+ G+P ++A YIM++ WDRFMRFMERY+++N L F++
Sbjct: 61 EGVLSTKDLNAKFIEGKPKTLQALYIMKNAEAWDRFMRFMERYSDENNLTFIR 113
>gi|425438192|ref|ZP_18818598.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|425449162|ref|ZP_18829005.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 7941]
gi|425462816|ref|ZP_18842283.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9808]
gi|389676666|emb|CCH94334.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|389764335|emb|CCI09346.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 7941]
gi|389824087|emb|CCI27278.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9808]
Length = 112
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y++DEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P+ IEA I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPTAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|414078466|ref|YP_006997784.1| photosystem II reaction center protein Psb28 [Anabaena sp. 90]
gi|413971882|gb|AFW95971.1| photosystem II reaction center protein Psb28 [Anabaena sp. 90]
Length = 111
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G +E VPDV+LT+++ G +G A F F+ P + G ++TG Y+IDEEG +
Sbjct: 4 IQFAKGIEETVVPDVRLTRAKQGESGTATFIFTNPDILAQDG-TDEVTGLYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+V KFVNG+P +EA Y+M S EWDRFMRFM RYA NGL K
Sbjct: 63 IRNVQGKFVNGKPESLEAIYVMNSNDEWDRFMRFMNRYAEDNGLGLSK 110
>gi|218439882|ref|YP_002378211.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
gi|226712028|sp|B7K9Y7.1|PSB28_CYAP7 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|218172610|gb|ACK71343.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
Length = 111
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +P ++LT+SR G +G A F F P++F + + ++TG Y+ID EG +
Sbjct: 4 IQFARGLVEDAIPTIRLTRSRTGDSGTATFYFESPNIF-ADEQTQEVTGMYLIDSEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
S +V KF+NG+P IEA IM SP EW+RFMRFMERYA ++GL+F K
Sbjct: 63 SREVKGKFINGKPHAIEAILIMNSPDEWERFMRFMERYAQEHGLEFTK 110
>gi|425454825|ref|ZP_18834551.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9807]
gi|389804402|emb|CCI16631.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9807]
Length = 112
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKESVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P IEA I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|427712438|ref|YP_007061062.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
6312]
gi|427376567|gb|AFY60519.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
6312]
Length = 110
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFI+G +E VPDV+LT+++DG+NG A F+F P + G + +I G YM+DEEG +
Sbjct: 4 IQFIRGINEEIVPDVRLTRAKDGTNGKAYFTFDNPKIV-QEGNL-EINGMYMVDEEGEIV 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGL 178
+ +V+AKF+NG+ + IEA Y +RS +WDRF+RFM+RYA +GL
Sbjct: 62 TREVNAKFINGQATAIEATYTIRSAADWDRFIRFMDRYAATHGL 105
>gi|440755161|ref|ZP_20934363.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa TAIHU98]
gi|440175367|gb|ELP54736.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa TAIHU98]
Length = 112
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y++DEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P+ IEA + SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPTAIEATVVFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|425444146|ref|ZP_18824203.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9443]
gi|443663500|ref|ZP_21133137.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa DIANCHI905]
gi|159026619|emb|CAO86551.1| psbW [Microcystis aeruginosa PCC 7806]
gi|389730576|emb|CCI05181.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9443]
gi|443331886|gb|ELS46525.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa DIANCHI905]
Length = 112
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P IEA I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|425472582|ref|ZP_18851423.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9701]
gi|389881328|emb|CCI38118.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9701]
Length = 112
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P IEA + SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TREVKGKFINGKPMAIEATVVFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|427701781|ref|YP_007045003.1| photosystem II reaction center protein Psb28 [Cyanobium gracile PCC
6307]
gi|427344949|gb|AFY27662.1| photosystem II reaction center protein Psb28 [Cyanobium gracile PCC
6307]
Length = 124
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD++LT+SRDG G A F F EP + +GDITG +M+DEEG +
Sbjct: 5 IQFFRGVDETVVPDIRLTRSRDGRTGQATFVFEEPEAL-APQSVGDITGMFMLDEEGEMV 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V A+FVNG+ S +EA Y +S +++RFMRF +RYA+ +GL F +
Sbjct: 64 TREVKARFVNGKASALEATYTWKSTADFERFMRFAQRYADGHGLGFAGQ 112
>gi|220909872|ref|YP_002485183.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7425]
gi|254783429|sp|B8HK72.1|PSB28_CYAP4 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|219866483|gb|ACL46822.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7425]
Length = 110
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 2/108 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E VPDV+LT+++DG+ G A+F F P + G + +I G YM+DEEG +
Sbjct: 4 IQFVRGVNEGVVPDVRLTRAKDGNTGRAVFYFDNPQLV-QEGNL-EIMGMYMVDEEGEIV 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V+AKF+NG+ + IEA Y +RS EWDRF+RFM RYA +GL F K
Sbjct: 62 TREVNAKFINGKATAIEAIYTIRSAPEWDRFIRFMNRYAESHGLGFNK 109
>gi|452821442|gb|EME28472.1| [pt] photosystem II reaction center 13kDa protein [Galdieria
sulphuraria]
Length = 98
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 72/109 (66%), Gaps = 17/109 (15%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQFI G DE +PD+KLT+S+DG A DITG Y+IDEEG +
Sbjct: 3 SIQFITGLDEKEIPDIKLTRSKDGKTDQA-----------------DITGMYLIDEEGEM 45
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V+AKFVNG+P +IEA YI+++ EWDRFMRFM+RYA + GL F K
Sbjct: 46 VTREVNAKFVNGKPYKIEALYIIKNNDEWDRFMRFMDRYAKEKGLVFTK 94
>gi|148239691|ref|YP_001225078.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
7803]
gi|166989936|sp|A5GLG6.1|PSB28_SYNPW RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|147848230|emb|CAK23781.1| Photosystem II reaction centre Psb28 protein [Synechococcus sp. WH
7803]
Length = 129
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +GTDE VPD++LT+SRDG G A F F +P + +G+I G +M+DEEG
Sbjct: 6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
L + +V+ KFVNG+PS +EA Y ++ ++++RFMRF ERYA GL +
Sbjct: 65 ELVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAERYAETKGLGY 113
>gi|352094188|ref|ZP_08955359.1| Photosystem II reaction center Psb28 protein [Synechococcus sp. WH
8016]
gi|351680528|gb|EHA63660.1| Photosystem II reaction center Psb28 protein [Synechococcus sp. WH
8016]
Length = 128
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEE 130
K IQF++G DE VPD+++T+SRDG G AIF F +P + E+ + ITG +M+DEE
Sbjct: 6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEE 63
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
GTL + +V+ KFVNG+PS +EA Y +S ++++RFMRF +RYA+ +GL +
Sbjct: 64 GTLVTREVNGKFVNGKPSALEATYTWKSEQDFERFMRFAQRYADSSGLGY 113
>gi|307150103|ref|YP_003885487.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7822]
gi|306980331|gb|ADN12212.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7822]
Length = 112
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP +K+T+SR G + A F F P++F + + ++TG Y+ID EG +
Sbjct: 4 IQFARGLKEDAVPTIKVTRSRTGDSATATFYFDSPNIF-ADDQTQEVTGMYLIDSEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KF+NG+P IEA IM S EW+RFMRFMERY +NGL+F K
Sbjct: 63 TREVKGKFINGKPQAIEALLIMNSASEWERFMRFMERYGKENGLEFTK 110
>gi|33240221|ref|NP_875163.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|81664649|sp|Q7VCG9.1|PSB28_PROMA RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33237748|gb|AAP99815.1| Photosystem II reaction centre W protein [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 117
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TI+F++G DE ++P+++LT+SRDG G A F+F EP S+ + G I G M DEEG L
Sbjct: 9 TIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQAL-SAVKDGSIQGMSMFDEEGEL 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
++ +V A+FVNG PS +EA Y+ +S ++ RFMRF +RYA+ NG+ + +K
Sbjct: 68 KTREVKARFVNGTPSALEATYVWKSESDFQRFMRFAKRYASSNGMGYSEK 117
>gi|390438745|ref|ZP_10227187.1| Photosystem II reaction center Psb28 protein [Microcystis sp. T1-4]
gi|389837829|emb|CCI31311.1| Photosystem II reaction center Psb28 protein [Microcystis sp. T1-4]
Length = 112
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPNIRLSRTKTGEKGSAEFYFEQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ V KF+NG+P I+A I SP EWDRFMRFMERY ++NGL+F K
Sbjct: 63 TTKVEGKFINGKPMAIKATVIFNSPAEWDRFMRFMERYGSENGLEFTK 110
>gi|88808467|ref|ZP_01123977.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 7805]
gi|88787455|gb|EAR18612.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 7805]
Length = 129
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +GTDE VPD++LT+SRDG G A F F +P + +G+I G +M+DEEG
Sbjct: 6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ + +V+ KFVNG+PS +EA Y ++ ++++RFMRF ERYA GL +
Sbjct: 65 EMVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAERYAETKGLGY 113
>gi|87124281|ref|ZP_01080130.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9917]
gi|86167853|gb|EAQ69111.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9917]
Length = 139
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G +E VPD++LT+SRDG G A+F F EP + +GDITG +++DEEGTL
Sbjct: 20 IQFFRGVNEPVVPDIRLTRSRDGRTGQAMFVFEEPDAL-APESMGDITGMFLVDEEGTLV 78
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V A+FVNG+PS IEA Y +S +++RFMRF +RYA+ + L +
Sbjct: 79 TREVKARFVNGKPSAIEATYTWKSEVDFERFMRFAQRYADAHDLGY 124
>gi|443329572|ref|ZP_21058157.1| photosystem II reaction center protein Psb28 [Xenococcus sp. PCC
7305]
gi|442790910|gb|ELS00412.1| photosystem II reaction center protein Psb28 [Xenococcus sp. PCC
7305]
Length = 112
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
+IQF +G E VPD+K+T+SR+ G AIF F P D +ITG Y+ID+EG
Sbjct: 2 ASIQFSRGVIEDAVPDIKVTRSRNLDGGKAIFYFEAPKALDQDS-TDEITGMYLIDDEGE 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ S DV KF+NG+ S IEA +MRS EW+RF+RFM++YA +NGL K
Sbjct: 61 IVSRDVKGKFINGKASAIEATLLMRSAEEWERFIRFMDKYAAENGLGLQK 110
>gi|124023340|ref|YP_001017647.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9303]
gi|166989933|sp|A2CA72.1|PSB28_PROM3 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123963626|gb|ABM78382.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9303]
Length = 117
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFI+G DE VPD+KLT+S DG G A+F F +P + G ITG +M+DEEG L
Sbjct: 10 IQFIRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMLDEEGELV 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V+A+FVNG+PS +E YI +S +++RFMRF +RYA NGL +
Sbjct: 69 TREVNARFVNGQPSALEVTYIWKSEEDFERFMRFAKRYAACNGLGY 114
>gi|254431161|ref|ZP_05044864.1| photosystem II reaction center protein Psb28 [Cyanobium sp. PCC
7001]
gi|197625614|gb|EDY38173.1| photosystem II reaction center protein Psb28 [Cyanobium sp. PCC
7001]
Length = 124
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD++LT+SRDG G A+F F EP + +GDITG +++DEEG L
Sbjct: 5 IQFFRGVDEPVVPDIRLTRSRDGRTGQAMFVFEEPDAL-APESMGDITGMFLVDEEGELV 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V A+FVNG+ S IEA Y +S +++RFMRF +RYA+ + L F
Sbjct: 64 TREVKARFVNGKASAIEATYTWKSTADFERFMRFAQRYADSHDLGF 109
>gi|260436441|ref|ZP_05790411.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
8109]
gi|260414315|gb|EEX07611.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
8109]
Length = 133
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG
Sbjct: 9 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEG 67
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ + +V+ KFVNG S +EA Y +S ++++RFMRF +RYA+ NGL +
Sbjct: 68 EMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQRYADANGLGY 116
>gi|33865599|ref|NP_897158.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
8102]
gi|81574696|sp|Q7U7C0.1|PSB28_SYNPX RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33632769|emb|CAE07580.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 8102]
Length = 127
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
K +IQF +G DE VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEE
Sbjct: 2 AKASIQFFRGVDEPVVPDIRLTRSRDGLTGQATFRFEQPAAI-APETMGDITGMWMVDEE 60
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + + +++ KFVNG S +EA Y +S ++++RFMRF +RYA NGL +
Sbjct: 61 GEMVTREINGKFVNGTASALEAVYSWKSVQDFERFMRFAQRYAEANGLGY 110
>gi|78212728|ref|YP_381507.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CC9605]
gi|122064934|sp|Q3AKD0.1|PSB28_SYNSC RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|78197187|gb|ABB34952.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. CC9605]
Length = 127
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG
Sbjct: 3 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEG 61
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ + +V+ KFVNG S +EA Y +S ++++RFMRF +RYA+ NGL +
Sbjct: 62 EMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQRYADANGLGY 110
>gi|33862877|ref|NP_894437.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9313]
gi|81573196|sp|Q7TV11.1|PSB28_PROMM RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33634793|emb|CAE20779.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9313]
Length = 117
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD+KLT+S DG G A+F F +P + G ITG +MIDEEG L
Sbjct: 10 IQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMIDEEGELV 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V+A+FVNG+PS +E YI +S +++RFMRF +RYA NGL +
Sbjct: 69 TREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKRYAACNGLGY 114
>gi|148242403|ref|YP_001227560.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
RCC307]
gi|147850713|emb|CAK28207.1| Photosystem II reaction centre Psb28 protein [Synechococcus sp.
RCC307]
Length = 112
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PD+KLT+SRDG G A F F EP + +GDITG +M+DEEG L
Sbjct: 5 IQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQAL-APETMGDITGMFMVDEEGELT 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
S DV+A+FVNG +EA Y +S ++ RFMRF ERYA + L F
Sbjct: 64 SRDVNARFVNGVAFALEATYTWKSEADFQRFMRFAERYAASHDLGF 109
>gi|113954403|ref|YP_730788.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CC9311]
gi|122064932|sp|Q0I9T4.1|PSB28_SYNS3 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|113881754|gb|ABI46712.1| photosystem II reaction center protein PsbW [Synechococcus sp.
CC9311]
Length = 128
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEE 130
K IQF++G DE VPD+++T+SRDG G AIF F +P + E+ + ITG +M+DEE
Sbjct: 6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEE 63
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G L + +V+ KFVNG+ S +EA Y +S ++++RFMRF +RYA+ +GL +
Sbjct: 64 GMLVTREVNGKFVNGKASALEATYTWKSEQDFERFMRFAQRYADSSGLGY 113
>gi|78184846|ref|YP_377281.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CC9902]
gi|122064933|sp|Q3AXG3.1|PSB28_SYNS9 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|78169140|gb|ABB26237.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. CC9902]
Length = 131
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +G DE VPD++LT+SRDG G A F F +P + G+I G +M+DEEG +
Sbjct: 9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEM 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V+ KFVNG PS +EA Y ++ +++RFMRF +RYA+ NGL +
Sbjct: 68 VTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQRYADSNGLGY 114
>gi|116070720|ref|ZP_01467989.1| hypothetical protein BL107_13780 [Synechococcus sp. BL107]
gi|116066125|gb|EAU71882.1| hypothetical protein BL107_13780 [Synechococcus sp. BL107]
Length = 131
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +G DE VPD++LT+SRDG G A F F +P + G+I G +M+DEEG +
Sbjct: 9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEM 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ +V+ KFVNG PS +EA Y ++ +++RFMRF +RYA+ NGL +
Sbjct: 68 VTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQRYADSNGLGY 114
>gi|434400393|ref|YP_007134397.1| Photosystem II reaction center Psb28 protein [Stanieria
cyanosphaera PCC 7437]
gi|428271490|gb|AFZ37431.1| Photosystem II reaction center Psb28 protein [Stanieria
cyanosphaera PCC 7437]
Length = 111
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PD+++T+SR G++G A F F P + S ++TG Y++DEEG +
Sbjct: 4 IQFSRGVTEEVIPDIRVTRSRTGNSGTATFYFEFPKIL-SQESTDEVTGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ +V KFVNG+P+ IEA IM+S EW+RF+RFM+RYA ++ L K
Sbjct: 63 TREVKGKFVNGKPTAIEAVLIMKSAEEWERFIRFMDRYAEEHDLGLTK 110
>gi|414878787|tpg|DAA55918.1| TPA: hypothetical protein ZEAMMB73_027919 [Zea mays]
Length = 58
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 54/57 (94%)
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
MID+EG LQSVDVSAKFVNG+P+RIEAKY+MR+PR+WDRFMRFMERY+ NGLQFVK
Sbjct: 1 MIDDEGVLQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMERYSQANGLQFVK 57
>gi|323455270|gb|EGB11139.1| hypothetical protein AURANDRAFT_22066 [Aureococcus anophagefferens]
Length = 151
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD---ITGFYMIDEEG 131
IQF +G E VPDVK+T+SRDG NG+A F F PS F+ E IT M+DEEG
Sbjct: 40 IQFYEGMFEPDVPDVKITRSRDGDNGVATFDFQAPSFFNCESEADRARAITAMTMMDEEG 99
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
L + +V+A+FV+G P + +Y M +P +DRF+RFM RYA NGL F K
Sbjct: 100 ELSTPNVNARFVDGDPVGLVVRYEMTTPAAFDRFIRFMGRYAEANGLNFNK 150
>gi|116074654|ref|ZP_01471915.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9916]
gi|116067876|gb|EAU73629.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9916]
Length = 128
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD+++T+SRDG G A F F EP + +GDI G +M+DEEG
Sbjct: 6 KAAIQFFRGVNEPVVPDIRMTRSRDGRTGQAKFVFEEPQAL-APETLGDIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+L + +V+ +FVNG+P +EA Y +S +++RFMRF +RYA N L +
Sbjct: 65 SLVTREVNGRFVNGKPFALEATYTWKSEADFERFMRFAQRYAAANDLGY 113
>gi|78779258|ref|YP_397370.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9312]
gi|122064927|sp|Q31B11.1|PSB28_PROM9 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|78712757|gb|ABB49934.1| photosystem II reaction center Psb28 protein-like protein
[Prochlorococcus marinus str. MIT 9312]
Length = 117
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG++G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITD-GEITGMRMIDAEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +EA YI +S ++DRFMRF YA NGL + +K
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEK 116
>gi|254526267|ref|ZP_05138319.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9202]
gi|221537691|gb|EEE40144.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9202]
Length = 117
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K
Sbjct: 68 TKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRFANSYAKSNGLGYSEK 116
>gi|157413299|ref|YP_001484165.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9215]
gi|166989932|sp|A8G4P8.1|PSB28_PROM2 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|157387874|gb|ABV50579.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9215]
Length = 117
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K
Sbjct: 68 TKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRFANSYAKSNGLGYSEK 116
>gi|126696271|ref|YP_001091157.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9301]
gi|166989930|sp|A3PCT1.1|PSB28_PROM0 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|126543314|gb|ABO17556.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9301]
Length = 117
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116
>gi|123968467|ref|YP_001009325.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. AS9601]
gi|166989935|sp|A2BR07.1|PSB28_PROMS RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123198577|gb|ABM70218.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. AS9601]
Length = 117
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116
>gi|123966242|ref|YP_001011323.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9515]
gi|166989934|sp|A2BWQ5.1|PSB28_PROM5 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123200608|gb|ABM72216.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9515]
Length = 117
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GT+E VP+++LT+ DG+ G AIF F +P S E G+ITG MID EG +
Sbjct: 9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIM 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +E YI ++ ++DRFMRF YA NGL + +K
Sbjct: 68 TREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116
>gi|33861483|ref|NP_893044.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|81573006|sp|Q7TU94.1|PSB28_PROMP RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33634060|emb|CAE19385.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 117
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+ DG+ G AIF F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
+ +V KFV+G P +E YI ++ ++DRFMRF YA NGL + +K
Sbjct: 68 TREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116
>gi|428218909|ref|YP_007103374.1| Photosystem II reaction center Psb28 protein [Pseudanabaena sp. PCC
7367]
gi|427990691|gb|AFY70946.1| Photosystem II reaction center Psb28 protein [Pseudanabaena sp. PCC
7367]
Length = 112
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
+ TIQ G +E DV+LT+S+DGS A F F P +ITG YM DEE
Sbjct: 1 MTATIQLALGVNE-EASDVRLTRSKDGSTSTATFIFENPLCMTEGQVNNEITGMYMSDEE 59
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
G + + V+AKF+NG+P+ IEA Y M EW+RF+RFM RYA NG+ F K
Sbjct: 60 GEMVTRSVNAKFINGQPAGIEAIYRMDGEAEWERFLRFMNRYAEANGMDFNK 111
>gi|443479229|ref|ZP_21068851.1| Photosystem II reaction center Psb28 protein [Pseudanabaena biceps
PCC 7429]
gi|443015284|gb|ELS30309.1| Photosystem II reaction center Psb28 protein [Pseudanabaena biceps
PCC 7429]
Length = 113
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG--DITGFYMIDEEGT 132
IQ G DE DVK+T+S+DG +A+F F P+ + + G +I G YMIDEEG
Sbjct: 5 IQLAIGIDE-EASDVKITRSKDGDTSVAVFIFESPNCM-TGADAGNNEILGMYMIDEEGE 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
+ + +V+AKF+NG+ + IEA + + EW+RF+RFM RYA NG+ K
Sbjct: 63 MVTRNVNAKFINGKSAGIEAIHKLNGQNEWERFLRFMNRYAEANGMSLNK 112
>gi|86609069|ref|YP_477831.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|122064930|sp|Q2JL50.1|PSB28_SYNJB RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|86557611|gb|ABD02568.1| photosystem II reaction center protein PsbW [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 104
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 73 PTIQFIQGTDELTVP-DVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
+I+F G E VP V++ KS+ G+ G AIF F D + +I G MIDEEG
Sbjct: 2 ASIEFSPGIQE--VPTQVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEG 54
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY--ANQNGL 178
L + ++ AKF+NG +E Y M + EWDRF+RFMER+ ANQ G+
Sbjct: 55 ELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFMERFSAANQMGM 103
>gi|86606087|ref|YP_474850.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
JA-3-3Ab]
gi|122064929|sp|Q2JUM7.1|PSB28_SYNJA RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|86554629|gb|ABC99587.1| photosystem II reaction center protein PsbW [Synechococcus sp.
JA-3-3Ab]
Length = 104
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 74 TIQFIQGTDELTVP-DVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
TI+F G E VP V+L KS+ G G AIF F E + I G MIDEEG
Sbjct: 3 TIEFSPGIPE--VPTQVRLLKSKTGKRGSAIFRFEELK-----SDTQSILGMRMIDEEGE 55
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY--ANQNGL 178
L + ++ AKF+NG +E Y M + EW+RF+RFMER+ ANQ G+
Sbjct: 56 LTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFMERFSAANQMGM 103
>gi|124025474|ref|YP_001014590.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. NATL1A]
gi|166989931|sp|A2C1G5.1|PSB28_PROM1 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123960542|gb|ABM75325.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. NATL1A]
Length = 113
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E P+++L ++ DG NG A++ F +P+ + + ++ID EG L
Sbjct: 10 IQFVKGENEKDQPEIRLFRNLDGKNGKAVYKFYKPTTITLTN-YKSVQRMFLIDSEGVLS 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYAN 174
+ + +++ Y S ++RFMRF RYAN
Sbjct: 69 TKKIDLSISEDHVKEVKSTYSWNSEEAFERFMRFASRYAN 108
>gi|72381975|ref|YP_291330.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. NATL2A]
gi|122064928|sp|Q46LK1.1|PSB28_PROMT RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|72001825|gb|AAZ57627.1| photosystem II reaction centre W protein [Prochlorococcus marinus
str. NATL2A]
Length = 113
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E P+++L ++ DG G A++ F +P + + ++ID EG L
Sbjct: 10 IQFVKGENEKDQPEIRLFRNLDGKKGKAVYKFYKPKTITLTN-YKSVQRMFLIDSEGVLS 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYAN 174
+ + +++ Y S E++RFMRF RYAN
Sbjct: 69 TKKIDLSISEDHVKEVKSTYNWNSEEEFERFMRFASRYAN 108
>gi|428779800|ref|YP_007171586.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
gi|428694079|gb|AFZ50229.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
Length = 125
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRD--GSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
PTI+F +G E V DV+L K + N + IF E +S + D E
Sbjct: 6 PTIEFFEGLPE-EVSDVRLRKEKSTGCHNVLMIFEKLEALERFNSFRQRFSKALNLTDSE 64
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + S +F+ G P R+E +++ WDRFMRFMERYA NG+ +
Sbjct: 65 GKISVEPDSLRFIYGGPEGDDLQRVECSFVIEQDDHWDRFMRFMERYAEANGMGY 119
>gi|119489685|ref|ZP_01622444.1| Photosystem II protein PsbW, class I [Lyngbya sp. PCC 8106]
gi|119454422|gb|EAW35571.1| Photosystem II protein PsbW, class I [Lyngbya sp. PCC 8106]
Length = 126
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 67 ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSE-PSVFDSSGEIGDITGFY 125
+ + V +IQFI+G DE + V L K R+ + + +F +V IT +
Sbjct: 2 LVVDVSTSIQFIKGLDE-EISGVSLRKVRNSEKKIVVLTFERLQAVEQLRAYRKQITNLW 60
Query: 126 MIDEEGTLQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ DEEG ++ KF + S++E + + S ++R MRF+ RYA +NG ++
Sbjct: 61 LRDEEGEIKVTPTGVKFFYVGDDELSKVECTFEVESEEIFERVMRFLNRYAEENGFEY 118
>gi|254416736|ref|ZP_05030486.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
gi|196176476|gb|EDX71490.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
Length = 141
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD--ITGFYMIDEE 130
P+IQF +G E + +V L ++R+ + SF + +IDEE
Sbjct: 18 PSIQFFEGLPE-ELSNVSLRRNRNSGVRSVLMSFDSLKAIEKFQSYTKRFANALLLIDEE 76
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + S KF+ G P R++ ++ + WDRFMRFM RYA NG+ +
Sbjct: 77 GQISVEPSSVKFIFGGPEGDDLRRVDCEFEIERQDHWDRFMRFMHRYAEVNGMAY 131
>gi|428219251|ref|YP_007103716.1| photosystem II reaction center protein Psb28 [Pseudanabaena sp. PCC
7367]
gi|427991033|gb|AFY71288.1| photosystem II reaction center protein Psb28 [Pseudanabaena sp. PCC
7367]
Length = 116
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEEGTL 133
+QFI+G DE + ++ L K RD + + F + ++ + I ++ DEEG +
Sbjct: 5 VQFIEGLDE-ELANISLRKRRDTEVKIVVLFFEQVRAIENIRSFTNKIDILWLRDEEGDI 63
Query: 134 QSVDVSAKFVNGRPSR-----IEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
Q KF G E + + + +W+R MRF+ RYA+QNG +F
Sbjct: 64 QVTPTGIKFKFGEDEENPKGEAECSFEVSNDEDWERVMRFLHRYADQNGFEF 115
>gi|428776712|ref|YP_007168499.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
gi|428690991|gb|AFZ44285.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
Length = 123
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 73 PTIQFIQGTDELTVPDVKL--TKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
PT++F +G E + DV+L KS N + IF E +S + D E
Sbjct: 6 PTVEFFEGIPE-EISDVRLRQAKSTGIRNVLIIFEQLEALERFNSFRQRFSKALNLKDSE 64
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
GT+ S +F+ G P R+E + + WDRFMRFMERYA NG+ + K
Sbjct: 65 GTISVEPDSLRFIYGGPEGDDLQRVECTFAIDQDDHWDRFMRFMERYAQANGMAYQDK 122
>gi|159906341|gb|ABX10861.1| photosystem II reaction center protein W [Rhodomonas baltica]
Length = 50
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS 114
MAV IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++
Sbjct: 1 MAV---IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPQVLEA 43
>gi|159906348|gb|ABX10866.1| photosystem II reaction center protein W [Rhodomonas sp. CCMP1170]
Length = 50
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS 114
MAV IQFIQG +E +PD++LT+SRDGS G A F F+ P V ++
Sbjct: 1 MAV---IQFIQGVNEDVIPDIRLTRSRDGSTGTATFRFANPQVLEA 43
>gi|37520497|ref|NP_923874.1| photosystem II reaction center 13 kDa protein [Gloeobacter
violaceus PCC 7421]
gi|81710828|sp|Q7NM41.1|PSB28_GLOVI RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|35211491|dbj|BAC88869.1| psb28 [Gloeobacter violaceus PCC 7421]
Length = 99
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 76 QFIQGTDELTVPDVKLTKSR-DGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
QF++G +E + D+++ S+ D S A+ + P ++ + F M DEEG +
Sbjct: 5 QFLEGINE-EITDIRVMASKYDTSRKTALIYIAAPK-----ADLNQVMSFRMRDEEGEIT 58
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
D+ +K +NG+ +E + M S W+RF RFMER
Sbjct: 59 VRDIRSKHLNGKFIGLEISHEMGSDAAWNRFYRFMER 95
>gi|414878784|tpg|DAA55915.1| TPA: hypothetical protein ZEAMMB73_289553 [Zea mays]
Length = 151
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 120 DITGFYMIDEEGTLQSVDVSAKFVNGR 146
DITGFYMI++EG LQSVDVSAKFVNG+
Sbjct: 121 DITGFYMINDEGVLQSVDVSAKFVNGK 147
>gi|443322021|ref|ZP_21051056.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
gi|442788224|gb|ELR97922.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
Length = 125
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGM--AIFSFSEPSVFDSSGEIGDITGFY----- 125
P+I+F G E + +V L R+ SNG+ + +F+ + T Y
Sbjct: 6 PSIEFFVGLSE-ELSNVSL--RRNPSNGLRTVMMTFTSLKALE---RFNSFTQQYQGNLR 59
Query: 126 MIDEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ID+EG + S KF+ G R+E + + S WDRF+RFMERYA NG+ +
Sbjct: 60 LIDDEGEISVSPSSLKFIYGGDEGDDLKRVECGFEIGSQEHWDRFLRFMERYAQANGMGY 119
Query: 181 VKK 183
+ K
Sbjct: 120 IDK 122
>gi|427737756|ref|YP_007057300.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
gi|427372797|gb|AFY56753.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
Length = 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMIDEE 130
P+IQF G +E + +V L ++ + + + +F + + +S + + DEE
Sbjct: 4 PSIQFFAGINE-KLGNVSLRRNPNTGKRIVLMTFDQLQALEKFNSFTKKSLNTMLLTDEE 62
Query: 131 GTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + S KF+ G R++ + + W+RFMRFM RYA NG+ +
Sbjct: 63 GEINVTPSSTKFIFGGDEGDELKRVDCQIEIEQDDHWERFMRFMHRYAEANGMAY 117
>gi|354567582|ref|ZP_08986751.1| photosystem II reaction center protein Psb28 [Fischerella sp.
JSC-11]
gi|353542854|gb|EHC12315.1| photosystem II reaction center protein Psb28 [Fischerella sp.
JSC-11]
Length = 121
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMIDEE 130
PTIQF G E + +V L + R G + + +F++ + +S + + DEE
Sbjct: 6 PTIQFFSGIYE-ELGNVSLRRGRSGKR-IILMTFNKLQALEGFNSFTKQSLNTMLLSDEE 63
Query: 131 GTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + S +F+ G R+E K + W+R MRFM RYA NG+ +
Sbjct: 64 GKISITPASVQFIFGGAEGDELQRVECKLEIEQDDHWERVMRFMHRYAQANGMAY 118
>gi|427708571|ref|YP_007050948.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7107]
gi|427361076|gb|AFY43798.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7107]
Length = 121
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD--ITGFYMI 127
+ P+IQF G E + +V L + + + +F++ + + +
Sbjct: 3 STTPSIQFFAGIFE-ELSNVSLRRGKVSGKRIVAMTFNQLQALEGLNSFTKPSLNSLLLS 61
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
DEEG + S +F+ G R+E ++ + W+RFMRFM+RYA NG+++
Sbjct: 62 DEEGEISVTPSSTRFIFGGDEGDELQRVECQFEIEQDDYWERFMRFMQRYAEANGMEY 119
>gi|37520610|ref|NP_923987.1| photosystem II 13 kDa protein [Gloeobacter violaceus PCC 7421]
gi|35211604|dbj|BAC88982.1| psb28-2 [Gloeobacter violaceus PCC 7421]
Length = 151
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 53 RLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF 112
R V + SG ++A TI+FI G E + ++KL + + N + +F F + +
Sbjct: 12 RFGAVQWLERHSGGQSLA---TIEFISGIRE-ELTEIKLRRGQTSGNRIVVFVFEKVNAM 67
Query: 113 DSSGEIGDITGFYMI--DEEGTLQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMR 167
D YM+ DEEG +Q + +F + +++ + + +W R R
Sbjct: 68 DKLSSFSSGGAQYMLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDLQWQRLRR 127
Query: 168 FMERYANQNGLQF 180
FM+RYA NG+++
Sbjct: 128 FMDRYAASNGMEY 140
>gi|428226137|ref|YP_007110234.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
gi|427986038|gb|AFY67182.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
Length = 129
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMIDEE 130
P+++F +G E + +V L ++R+ + SF + + +S + D E
Sbjct: 6 PSVEFFEGISE-EISNVSLRRNRNTGARSVLLSFEKLRCIERFNSYRKRFSNALLLTDSE 64
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + S +F+ G P R++ K+ + W+RF RFM+RYA NG+ +
Sbjct: 65 GQITVEPSSVQFIFGGPEGDDLERVDCKFEIEREEHWERFRRFMDRYAEANGMAY 119
>gi|427729773|ref|YP_007076010.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
gi|427365692|gb|AFY48413.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
Length = 122
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMI 127
+ P+IQF G E + +V L + + + F + + +S + +
Sbjct: 3 STNPSIQFFTGIFE-ELSNVSLRREVRTGKRVVMMKFEKLKAIEGFNSFTKQSLNALLLS 61
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
DEEG + S +F+ G +E K+ + WDRFMRFM RYA+ NG+++
Sbjct: 62 DEEGEISVTPSSTRFIFGGDEGDELQGVECKFEIERDDHWDRFMRFMHRYADANGMEY 119
>gi|428209556|ref|YP_007093909.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
gi|428011477|gb|AFY90040.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
Length = 123
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 126 MIDEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
++DEEG +Q S KF+ G R++ + + W+RFMRFM RYA NG+ F
Sbjct: 59 LVDEEGEIQVTPDSTKFIFGGMDGDEFQRLDCTFAIEQEDHWERFMRFMNRYAEANGMAF 118
>gi|411118271|ref|ZP_11390652.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
gi|410711995|gb|EKQ69501.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
Length = 126
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFY----- 125
++P+IQF G E + V L ++R + + F E I F
Sbjct: 4 LQPSIQFFDGISE-ELDTVSLRRNRVSGARIVVMVFRELKA------IAQFNSFRYRFSQ 56
Query: 126 ---MIDEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNG 177
+ D EG + S KF G P R+E ++ + W+RF RFMERYA NG
Sbjct: 57 CLKLTDSEGEISIEPSSVKFYFGGPEGDELERMECRFELVQDDHWERFSRFMERYAAANG 116
Query: 178 LQF 180
L++
Sbjct: 117 LEY 119
>gi|332710692|ref|ZP_08430634.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
gi|332350528|gb|EGJ30126.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
Length = 128
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMI--DEE 130
P+IQF G E + +V L K+R + + +F + + M+ DEE
Sbjct: 6 PSIQFFDGIYE-ELSNVSLRKNRRSGARIVLMTFESLKAIEQFNSYRNRFSQSMVLTDEE 64
Query: 131 GTLQSVDVSAKFVNGRP-----SRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
G + S KF G P + +E K + W+RFMRFM RYA NG+ +
Sbjct: 65 GIIAMTPSSIKFRFGGPEGDELAGVECKVEIDEDDHWERFMRFMNRYAEANGMAY 119
>gi|218441419|ref|YP_002379748.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
gi|218174147|gb|ACK72880.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
Length = 123
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIF-SFSEPSVFDSSGE--IGDITGF 124
+V P+I+F G E + +V L +S+D N + IF S F S + GD+
Sbjct: 3 SVTPSIEFFDGLSE-ELSNVSLRRSKDTGVRNVLMIFKSLKAIEKFQSFTKRSYGDLR-- 59
Query: 125 YMIDEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQ 179
+ID EG + S K + G R+E + + W+RFMRFM RYA NG+
Sbjct: 60 -LIDSEGIISVEPSSVKLIFGGDEGDELIRVECTFEIPRDDHWERFMRFMHRYAEANGMG 118
Query: 180 F 180
+
Sbjct: 119 Y 119
>gi|317969775|ref|ZP_07971165.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CB0205]
Length = 48
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF 112
IQF G DE VPD+++T+SRDG G AIF F +P
Sbjct: 4 IQFFPGVDEPVVPDIRMTRSRDGRTGQAIFVFDQPQAL 41
>gi|67923255|ref|ZP_00516740.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|416396680|ref|ZP_11686463.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
gi|67854881|gb|EAM50155.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|357262934|gb|EHJ12007.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
Length = 123
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 71 VKPTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYM 126
V P+I+F G ++EL+ ++ +K N + IF + F S + GD+ +
Sbjct: 4 VTPSIEFFVGISEELSNVSLRRSKQTGIRNVLMIFENLKSLERFRSYTNQTYGDLR---L 60
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMERYANQNGLQF 180
ID EG + S K + G E K + + WDRFMRFMERYA NG+ +
Sbjct: 61 IDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFDLEKDEHWDRFMRFMERYAEANGMAY 119
>gi|428215654|ref|YP_007088798.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
gi|428004035|gb|AFY84878.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
Length = 118
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMIDEEGT 132
++QFI+G DE + + L K R + F + I I + DEEG
Sbjct: 4 SVQFIKGLDE-ELGGISLRKGRTSGTKTVVLLFERVQAMEKGRSFINKIETLNLSDEEGE 62
Query: 133 LQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
+ + KF + S+ E + + S W+R MRF+ RYA+ +G +F
Sbjct: 63 ITVIPNGMKFQFVDDDNLSQAECSFEVTSDEAWERVMRFLHRYADAHGFEF 113
>gi|409991161|ref|ZP_11274448.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
str. Paraca]
gi|291565696|dbj|BAI87968.1| photosystem II Psb28-2 protein [Arthrospira platensis NIES-39]
gi|409937979|gb|EKN79356.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
str. Paraca]
Length = 116
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS-SGEIGDITGFYMIDEEG 131
+IQFI G DE + V L K RD + + + F++ + I+ ++ DEEG
Sbjct: 3 TSIQFIDGLDE-ELGGVSLRKRRDSNTKIVVLVFNQLKAIEKLRAYRKQISHLWLRDEEG 61
Query: 132 TLQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
++ KF + S+ E + + S + R MRF+ RYA+ +G ++
Sbjct: 62 EIRVSPTGVKFFYVGDDELSKAECTFEVHSEDIFGRVMRFLHRYADDHGFEY 113
>gi|282900735|ref|ZP_06308677.1| Photosystem II protein PsbW, class I [Cylindrospermopsis
raciborskii CS-505]
gi|281194535|gb|EFA69490.1| Photosystem II protein PsbW, class I [Cylindrospermopsis
raciborskii CS-505]
Length = 120
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEP---SVFDSSGEIGDITGFYMIDE 129
P+IQF G E + +V L + + + F + S F+S + + +IDE
Sbjct: 4 PSIQFFAGLFE-EMSNVSLRREVRTGKLIVVLQFEQLKAISGFNSFTK-QSLNSLLLIDE 61
Query: 130 EGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
EG +Q KF+ G R++ K+ + +DR MRF+ RYA+ NG+++ +
Sbjct: 62 EGEIQVTPSGTKFIFGGDEGDELKRVDCKFAVDPGEGFDRIMRFLHRYADANGMEYAE 119
>gi|425436021|ref|ZP_18816462.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|425445452|ref|ZP_18825482.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9443]
gi|389679326|emb|CCH91867.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|389734557|emb|CCI01806.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9443]
Length = 119
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
PTI+F G E + V L K+++ + +F + ++ GD+ +
Sbjct: 4 PTIEFFVGLSE-ELSGVSLRKNKNTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LT 59
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DEEG + + S KF+ G R+E + + + W+RFMRFM RYA NG+ +
Sbjct: 60 DEEGVITVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFMRFMNRYAAANGMGYQD 118
Query: 183 K 183
K
Sbjct: 119 K 119
>gi|425457099|ref|ZP_18836805.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9807]
gi|389801636|emb|CCI19220.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9807]
Length = 119
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 73 PTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYMID 128
PTI+F G ++EL+ ++ KS N + F + F S + GD+ + D
Sbjct: 4 PTIEFFVGLSEELSGVSLRKNKSTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LTD 60
Query: 129 EEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
EEG + + S KF+ G R+E + + + W+RFMRFM RYA NG+ + K
Sbjct: 61 EEGVITVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFMRFMNRYAAANGMGYQDK 119
>gi|172037705|ref|YP_001804206.1| photosystem II 13 kD protein [Cyanothece sp. ATCC 51142]
gi|354553421|ref|ZP_08972727.1| photosystem II reaction center protein Psb28 [Cyanothece sp. ATCC
51472]
gi|171699159|gb|ACB52140.1| photosystem II 13 kD protein [Cyanothece sp. ATCC 51142]
gi|353554138|gb|EHC23528.1| photosystem II reaction center protein Psb28 [Cyanothece sp. ATCC
51472]
Length = 123
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIF-SFSEPSVFDS--SGEIGDITGFY 125
V P+I+F G E + +V+L +S+ N + IF + F S + GD+
Sbjct: 4 VTPSIEFFVGIAE-ELSNVRLRRSKQTGIRNVLMIFENLKSLERFRSYTTQTYGDLR--- 59
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMERYANQNGLQF 180
+ID EG + S K + G E K + + WDRFMRFMERYA NG+ +
Sbjct: 60 LIDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFEIEKDEHWDRFMRFMERYAEANGMAY 119
>gi|126659449|ref|ZP_01730583.1| photosystem II protein [Cyanothece sp. CCY0110]
gi|126619285|gb|EAZ90020.1| photosystem II protein [Cyanothece sp. CCY0110]
Length = 123
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIF-SFSEPSVFDS--SGEIGDITGFY 125
V P+I+F G E + +V+L +S+ N + IF + F S + GD+
Sbjct: 4 VTPSIEFFVGISE-ELSNVRLRRSKQTGIRNVLMIFENLKSLERFRSYTTQTYGDLR--- 59
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMERYANQNGLQF 180
+ID EG + S K + G E K + + WDRFMRFMERYA NG+ +
Sbjct: 60 LIDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFEIEKDDHWDRFMRFMERYAEANGMAY 119
>gi|209526674|ref|ZP_03275198.1| photosystem II reaction center protein Psb28 [Arthrospira maxima
CS-328]
gi|376007146|ref|ZP_09784350.1| Putative photosystem II reaction center psb28 protein (PSII
psb28-like protein) [Arthrospira sp. PCC 8005]
gi|423064030|ref|ZP_17052820.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
C1]
gi|209492910|gb|EDZ93241.1| photosystem II reaction center protein Psb28 [Arthrospira maxima
CS-328]
gi|375324522|emb|CCE20103.1| Putative photosystem II reaction center psb28 protein (PSII
psb28-like protein) [Arthrospira sp. PCC 8005]
gi|406714447|gb|EKD09612.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
C1]
Length = 116
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS-SGEIGDITGFYMIDEEG 131
+IQFI G DE + V L K RD + + + F + + I+ ++ DEEG
Sbjct: 3 TSIQFIDGLDE-ELGGVSLRKRRDSNTKIVVLVFKQLKAIEKLRAYRKQISHLWLRDEEG 61
Query: 132 TLQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
++ KF + S+ E + + S + R MRF+ RYA+ +G ++
Sbjct: 62 EIRVSPTGVKFFYVGDDELSKAECTFEVDSEDIFGRVMRFLHRYADDHGFEY 113
>gi|307150135|ref|YP_003885519.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7822]
gi|306980363|gb|ADN12244.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7822]
Length = 130
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
P+I+F G E + +V L +S++ + F + + GD+ +I
Sbjct: 6 PSIEFFDGLSE-ELANVSLRRSKETGIRSVLMIFKTLKAIEKFQSFTKRSYGDLR---LI 61
Query: 128 DEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
D EG + S KF+ G R+E + + W+RFMRFM+RYA NG+ +
Sbjct: 62 DSEGIISVQPSSVKFIFGGDEGDDIKRVECTFEIPQDDHWERFMRFMQRYAEANGMGY 119
>gi|443649585|ref|ZP_21130293.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa DIANCHI905]
gi|159028583|emb|CAO90585.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443334885|gb|ELS49374.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa DIANCHI905]
Length = 119
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
PTI+F G E + V L K+++ + +F + ++ GD+ +
Sbjct: 4 PTIEFFVGLSE-ELSGVSLRKNKNTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LT 59
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DEEG + + S KF+ G R+E + + + W+RF+RFM RYA NG+ +
Sbjct: 60 DEEGVITVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFLRFMNRYAAANGMGYQD 118
Query: 183 K 183
K
Sbjct: 119 K 119
>gi|390441786|ref|ZP_10229817.1| Photosystem II reaction center psb28 protein [Microcystis sp. T1-4]
gi|422301540|ref|ZP_16388907.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9806]
gi|389789455|emb|CCI14530.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9806]
gi|389834840|emb|CCI33943.1| Photosystem II reaction center psb28 protein [Microcystis sp. T1-4]
Length = 119
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 73 PTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYMID 128
PTI+F G ++EL+ ++ K+ N + F + F S + GD+ + D
Sbjct: 4 PTIEFFVGLSEELSGVSLRQNKNTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LTD 60
Query: 129 EEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
EEG + + S KF+ G R+E + + + W+RFMRFM RYA NG+ + K
Sbjct: 61 EEGVITVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFMRFMNRYAAANGMGYQDK 119
>gi|425451732|ref|ZP_18831552.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 7941]
gi|425459289|ref|ZP_18838775.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9808]
gi|389766822|emb|CCI07633.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 7941]
gi|389823044|emb|CCI29071.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9808]
Length = 119
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
PTI+F G E + V L K+++ + +F + ++ GD+ +
Sbjct: 4 PTIEFFVGLSE-ELSGVSLRKNKNTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LT 59
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DEEG + + S KF+ G R+E + + + W+RF+RFM RYA NG+ +
Sbjct: 60 DEEGVIIVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFLRFMNRYAAANGMGYQD 118
Query: 183 K 183
K
Sbjct: 119 K 119
>gi|166365284|ref|YP_001657557.1| photosystem II 13 kDa protein [Microcystis aeruginosa NIES-843]
gi|425438806|ref|ZP_18819148.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9717]
gi|425467550|ref|ZP_18846830.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9809]
gi|425471597|ref|ZP_18850449.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9701]
gi|166087657|dbj|BAG02365.1| photosystem II 13 kDa protein [Microcystis aeruginosa NIES-843]
gi|389717662|emb|CCH98263.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9717]
gi|389829646|emb|CCI28852.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9809]
gi|389882493|emb|CCI37043.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9701]
Length = 119
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 73 PTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYMID 128
PTI+F G ++EL+ ++ KS N + F + F S + GD+ + D
Sbjct: 4 PTIEFFVGLSEELSGVSLRKNKSTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LTD 60
Query: 129 EEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183
EEG + + S KF+ G R+E + + + W+RF+RFM RYA NG+ + K
Sbjct: 61 EEGVIIVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFLRFMNRYAAANGMGYQDK 119
>gi|17228577|ref|NP_485125.1| hypothetical protein all1082 [Nostoc sp. PCC 7120]
gi|75909932|ref|YP_324228.1| photosystem II protein PsbW, class I [Anabaena variabilis ATCC
29413]
gi|17130428|dbj|BAB73039.1| all1082 [Nostoc sp. PCC 7120]
gi|75703657|gb|ABA23333.1| Photosystem II protein PsbW, class I [Anabaena variabilis ATCC
29413]
Length = 122
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMI 127
++ P+IQF G E + +V L + + + F++ + +S + +
Sbjct: 3 SITPSIQFFAGIFE-ELSNVSLRREVRTGKRIVMMKFNQLQAIEGFNSFTKQSLNSLLLT 61
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
DEEG + + +F+ G +E K+ + W+RFMRFM RYA N +++
Sbjct: 62 DEEGEISVTPSATRFIFGGDEGDELQGVECKFEVERDDHWERFMRFMNRYAEANDMEY 119
>gi|119713441|gb|ABL97502.1| photosystem II reaction center W protein PsbW [uncultured marine
bacterium HOT0_02H05]
Length = 123
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 71 VKPTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYM 126
V P+I+F G ++EL+ ++ +K N + IF + F S + GD+ +
Sbjct: 4 VTPSIEFFVGISEELSNVSLRRSKQTGIRNVLMIFENLKSLERFRSYTNQTYGDLR---L 60
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMERYANQNGLQF 180
ID EG + S K + G E K + + WDRFMRFME YA NG+ +
Sbjct: 61 IDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFDLEKDEHWDRFMRFMEGYAEANGMAY 119
>gi|428203047|ref|YP_007081636.1| photosystem II reaction center protein Psb28 [Pleurocapsa sp. PCC
7327]
gi|427980479|gb|AFY78079.1| photosystem II reaction center protein Psb28 [Pleurocapsa sp. PCC
7327]
Length = 130
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
P+I+F G E + +V L +++D + +F + + GD+ +I
Sbjct: 6 PSIEFFVGLSE-ELENVSLRQNKDTGVRSVLMTFKMLKALEKFQSFTQKTYGDLR---LI 61
Query: 128 DEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
D EG + S K + G R+E K + W+R MRF+ RYA NG+ + +
Sbjct: 62 DSEGEISIEPASLKIIYGGDDGDDLIRVECKLEIYREDHWERLMRFLHRYAEANGMGYQE 121
Query: 183 K 183
K
Sbjct: 122 K 122
>gi|440752738|ref|ZP_20931941.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa TAIHU98]
gi|440177231|gb|ELP56504.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa TAIHU98]
Length = 119
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
P I+F G E + V L K+++ + +F + ++ GD+ +
Sbjct: 4 PKIEFFVGLSE-ELSGVSLRKNKNTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LT 59
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182
DEEG + + S KF+ G R+E + + + W+RF+RFM RYA NG+ +
Sbjct: 60 DEEGVIIVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFLRFMNRYAAANGMGYQD 118
Query: 183 K 183
K
Sbjct: 119 K 119
>gi|170077927|ref|YP_001734565.1| photosystem II complex subunit [Synechococcus sp. PCC 7002]
gi|5650768|gb|AAD45940.1|AF089813_3 photosystem II complex subunit [Synechococcus sp. PCC 7002]
gi|169885596|gb|ACA99309.1| photosystem II complex subunit [Synechococcus sp. PCC 7002]
Length = 157
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIE-----AKYIMRSPREWDRFMRFMERYANQNGLQF 180
+IDEEG + S + V G E ++ + + W+RFMRFM RYA+++G +
Sbjct: 77 LIDEEGDIAVTPSSCRIVFGGEEGDELRGVICRFEIENDDHWERFMRFMHRYADEHGFAY 136
>gi|298205073|emb|CBI40594.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 3 ALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNSK 62
AL+SLA P+SHC QSR L + +WAVH SA S F+ S+ +PR + R
Sbjct: 18 ALQSLAFIPPLSHC-CKQSRL--LLDLSSWAVHRSAHSSFDSHSLCLPR-PWELMNRQKG 73
Query: 63 VSGPITMAVK 72
V P+ ++ K
Sbjct: 74 VLQPVDISAK 83
>gi|218248325|ref|YP_002373696.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8801]
gi|257060348|ref|YP_003138236.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8802]
gi|218168803|gb|ACK67540.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8801]
gi|256590514|gb|ACV01401.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8802]
Length = 124
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 73 PTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDSSGE--IGDITGFYMID 128
P+I+F G ++EL+ ++ +K N + IF + F S + GD+ +ID
Sbjct: 6 PSIEFFVGISEELSNVSLRRSKETGIRNVLLIFDTLKSLEKFKSFTQQTYGDLR---LID 62
Query: 129 EEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
EG + S K + G ++ + + WDRFMRFM RYA NG+ +
Sbjct: 63 CEGEISVKPSSLKIIWGGDEGDELRQVRCGFEIEQDDHWDRFMRFMNRYAEANGMGY 119
>gi|16330371|ref|NP_441099.1| photosystem II protein [Synechocystis sp. PCC 6803]
gi|383322112|ref|YP_005382965.1| PsbW [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325281|ref|YP_005386134.1| PsbW [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491165|ref|YP_005408841.1| protein PsbW [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436432|ref|YP_005651156.1| protein PsbW [Synechocystis sp. PCC 6803]
gi|451814529|ref|YP_007450981.1| photosystem II 13kD protein (PsbW)-like protein [Synechocystis sp.
PCC 6803]
gi|1652861|dbj|BAA17779.1| slr1739 [Synechocystis sp. PCC 6803]
gi|339273464|dbj|BAK49951.1| PsbW homolog [Synechocystis sp. PCC 6803]
gi|359271431|dbj|BAL28950.1| PsbW homolog [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274601|dbj|BAL32119.1| PsbW homolog [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277771|dbj|BAL35288.1| PsbW homolog [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958291|dbj|BAM51531.1| photosystem II protein [Synechocystis sp. PCC 6803]
gi|451780498|gb|AGF51467.1| photosystem II 13kD protein (PsbW)-like protein [Synechocystis sp.
PCC 6803]
Length = 122
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAK-----YIMRSPREWDRFMRFMERYANQNGLQF 180
+ DEEG ++ S KF+ G E + + + W+RF+RFMERYA NG+ +
Sbjct: 60 LADEEGAMEIEPSSVKFIFGGDEGDELRGAQCSFDLVKNDHWERFIRFMERYAEANGMGY 119
>gi|427414856|ref|ZP_18905043.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7375]
gi|425755509|gb|EKU96374.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7375]
Length = 124
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSR-----IEAKYIMRSPREWDRFMRFMERYANQN 176
++ID EG + + K G +E K + W+RFMRFM RYA N
Sbjct: 55 NALHLIDTEGEILIMPSGVKMFYGDLEGEDLKGVECKLEIDRDDHWERFMRFMHRYAEAN 114
Query: 177 GLQF 180
GL +
Sbjct: 115 GLAY 118
>gi|56751635|ref|YP_172336.1| photosystem II reaction center W protein [Synechococcus elongatus
PCC 6301]
gi|81301287|ref|YP_401495.1| photosystem II reaction center W protein [Synechococcus elongatus
PCC 7942]
gi|25019700|gb|AAN71786.1| PsbW [Synechococcus elongatus PCC 7942]
gi|56686594|dbj|BAD79816.1| photosystem II reaction center W protein [Synechococcus elongatus
PCC 6301]
gi|81170168|gb|ABB58508.1| photosystem II reaction center W protein [Synechococcus elongatus
PCC 7942]
Length = 124
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD--ITGFYMID 128
V PTI+ G E + +V L + R + F D + D
Sbjct: 4 VLPTIELFDGIAE-ELDNVSLRRDRQSGTRNVLLRFRALKALDRFNSFRSRFSKAIRLTD 62
Query: 129 EEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 180
EG ++ S+K V G R+E + + W RFMRFMERYA N + +
Sbjct: 63 SEGAIELWPDSSKLVFGGDDGDELDRVEFVVPIDNEDHWQRFMRFMERYAAANDMTY 119
>gi|427722732|ref|YP_007070009.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7376]
gi|427354452|gb|AFY37175.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7376]
Length = 164
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 60 NSKVSGPITMAVKPTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI 118
NS ++ + P I+F G T++L+ ++ RD G+ S +F+ +
Sbjct: 28 NSAIAPEAEKDITPRIEFFNGITEDLS----NVSLRRDPRTGLK----SVEMIFEQLNAL 79
Query: 119 GDITGFY--------MIDEEGTLQSVDVSAKFVNGRPSR-----IEAKYIMRSPREWDRF 165
F +IDEEG + S + + G + ++ + W+RF
Sbjct: 80 ERFQSFTSGFKGVVSLIDEEGDIAVTPSSCRIIFGGDEGDDLRGVICRFEIDQENHWERF 139
Query: 166 MRFMERYANQNGLQF 180
+RFM RYA+ NG +
Sbjct: 140 IRFMNRYADANGFAY 154
>gi|407396289|gb|EKF27431.1| hypothetical protein MOQ_008849 [Trypanosoma cruzi marinkellei]
Length = 480
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 7/123 (5%)
Query: 30 VTWAVHGSAQSPFNGQS----VHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELT 85
+W + PF +S +++ + LS R + + P K +I + T
Sbjct: 4 CSWCYSSFQRLPFGRRSAAGGINLNKGLLSDRERGDQFTDPTVYRNKKSIAAMHKVSRKT 63
Query: 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE---IGDITGFYMIDEEGTLQSVDVSAKF 142
+K K ++G N + + S E + D S +I +IDE+G L S D +K+
Sbjct: 64 ERLLKEEKQKEGMNALGVDSQMERELLDGSMHPLHREEIAAARVIDEDGLLSSSDPGSKY 123
Query: 143 VNG 145
Sbjct: 124 TTA 126
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,495,976
Number of Sequences: 23463169
Number of extensions: 108670964
Number of successful extensions: 273677
Number of sequences better than 100.0: 281
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 273315
Number of HSP's gapped (non-prelim): 283
length of query: 183
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 50
effective length of database: 9,238,593,890
effective search space: 461929694500
effective search space used: 461929694500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)