Query 030062
Match_columns 183
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kvo_A Photosystem II reaction 100.0 5.2E-67 1.8E-71 409.5 12.6 111 72-183 1-111 (120)
2 3uv0_A Mutator 2, isoform B; F 73.5 7.6 0.00026 29.5 5.7 68 70-148 2-71 (102)
3 1ynx_A Replication factor-A pr 48.3 14 0.0005 26.5 3.2 19 118-136 38-56 (114)
4 3lmb_A Uncharacterized protein 46.8 34 0.0012 26.5 5.3 43 130-172 83-125 (165)
5 1jmc_A Protein (replication pr 32.0 46 0.0016 26.1 3.9 19 118-136 42-60 (246)
6 2dnn_A RNA-binding protein 12; 31.9 14 0.00047 26.3 0.8 36 75-113 34-70 (109)
7 3smz_A Protein raver-1, ribonu 31.1 53 0.0018 25.4 4.1 65 39-112 159-239 (284)
8 3t8b_A 1,4-dihydroxy-2-naphtho 31.1 50 0.0017 28.1 4.3 29 86-116 54-82 (334)
9 2pqf_A Poly [ADP-ribose] polym 29.4 48 0.0016 25.9 3.6 40 138-177 27-67 (198)
10 2kt5_A RNA and export factor-b 27.5 1.5E+02 0.0051 20.3 5.9 28 86-113 62-90 (124)
11 3eur_A Uncharacterized protein 27.0 42 0.0014 22.9 2.6 21 118-138 111-131 (142)
12 2hgm_A HNRPF protein, heteroge 26.8 16 0.00055 26.9 0.4 36 76-113 61-98 (126)
13 3a0s_A Sensor protein; PAS-fol 25.9 52 0.0018 18.6 2.5 24 122-145 3-26 (96)
14 4g2e_A Peroxiredoxin; redox pr 24.9 48 0.0016 23.8 2.7 16 123-138 121-136 (157)
15 4f02_A Polyadenylate-binding p 24.8 28 0.00094 26.3 1.4 38 76-113 106-157 (213)
16 3v67_A Sensor protein CPXA; PA 24.8 27 0.00092 26.8 1.4 16 123-138 57-72 (138)
17 1wf1_A RNA-binding protein RAL 24.5 1.4E+02 0.0047 20.0 4.8 22 86-113 55-76 (110)
18 2err_A Ataxin-2-binding protei 24.4 43 0.0015 22.9 2.3 28 86-113 56-83 (109)
19 2cq3_A RNA-binding protein 9; 24.1 32 0.0011 22.8 1.5 28 86-113 42-69 (103)
20 2do0_A HnRNP M, heterogeneous 23.9 49 0.0017 22.2 2.4 27 86-112 42-69 (114)
21 1fxl_A Paraneoplastic encephal 23.8 98 0.0034 21.2 4.0 62 39-112 66-143 (167)
22 3s7r_A Heterogeneous nuclear r 23.1 71 0.0024 20.3 3.0 28 86-113 38-67 (87)
23 2cqi_A Nucleolysin TIAR; RNA r 22.8 33 0.0011 22.8 1.3 28 86-113 42-69 (103)
24 2ln3_A De novo designed protei 22.7 78 0.0027 22.9 3.4 45 137-182 17-61 (83)
25 2div_A TRNA selenocysteine ass 22.6 81 0.0028 20.5 3.3 28 86-113 36-66 (99)
26 3hcz_A Possible thiol-disulfid 21.9 1.3E+02 0.0044 19.9 4.2 35 119-172 110-144 (148)
27 1wez_A HnRNP H', FTP-3, hetero 21.8 50 0.0017 22.5 2.2 35 76-113 34-69 (102)
28 2db1_A Heterogeneous nuclear r 21.6 34 0.0012 23.9 1.3 28 86-113 47-75 (118)
29 3lhe_A GNTR family transcripti 21.4 1E+02 0.0034 21.6 3.8 28 129-156 32-59 (143)
30 3e1y_E Eukaryotic peptide chai 21.3 99 0.0034 24.1 4.0 35 95-129 153-187 (204)
31 3ucg_A Polyadenylate-binding p 21.2 89 0.0031 19.7 3.2 28 86-113 33-62 (89)
32 4gqc_A Thiol peroxidase, perox 21.2 59 0.002 23.7 2.6 39 123-175 123-161 (164)
33 3ubh_A Neural-cadherin; cell a 21.1 63 0.0022 27.5 3.1 55 81-136 4-60 (419)
34 4f25_A Polyadenylate-binding p 21.1 31 0.0011 23.8 1.0 28 86-113 32-59 (115)
35 1r8s_E ARNO; protein transport 20.7 49 0.0017 27.0 2.2 24 157-180 106-130 (203)
36 3smj_A Poly [ADP-ribose] polym 20.4 91 0.0031 24.5 3.7 29 148-176 35-63 (193)
37 2omz_B Epithelial-cadherin; le 20.3 42 0.0014 23.5 1.5 35 96-136 32-67 (105)
38 3luc_A Protein argonaute-2; MI 20.0 95 0.0032 22.8 3.5 43 139-181 2-49 (138)
No 1
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=100.00 E-value=5.2e-67 Score=409.54 Aligned_cols=111 Identities=51% Similarity=0.932 Sum_probs=108.6
Q ss_pred eceeEeecCCCCCCCCCeeEEeccCCCcceEEEEEcCCcccccCCcccceeeEEEEecCceEEeEeceeEEEcCCcceeE
Q 030062 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIE 151 (183)
Q Consensus 72 ~asIQFi~GidEe~iPdVrLtRSrdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI~Tr~V~aKFvnGkp~~iE 151 (183)
+|+||||+||||++||||||||||||++|+|+|+|++|++|+++ ++++|||||||||||||+|+||++|||||||++||
T Consensus 1 ~a~IQF~~Gi~E~~vpdVrLtRsrdg~~g~A~f~F~~p~al~~~-~~~~itgm~LiDeEGei~t~~v~aKFvnGkp~~iE 79 (120)
T 2kvo_A 1 MAEIQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTILAKE-STDDITGMYLIDDEGEIITREVKGKFINGRPTAIE 79 (120)
T ss_dssp CCEEESSSSCCCCCCCEEEEEECTTSCSEEEEEEEESCGGGTSS-CGGGCCCEEEECSSCEEEECCEEEEEETTEEEEEE
T ss_pred CCcEEEecCCCCCcCCceEEEEcccCCccEEEEEECCchhcccc-ccCcceeEEEEccCccEEEEecceEEECCceeEEE
Confidence 48999999999999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred EEEEecCchhHHHHHHHHHhhhhhcCcceecC
Q 030062 152 AKYIMRSPREWDRFMRFMERYANQNGLQFVKK 183 (183)
Q Consensus 152 a~y~m~s~~eWdRFMRFMeRYAe~NGL~f~k~ 183 (183)
|+|+|+|+++||||||||||||++|||+|+|+
T Consensus 80 a~y~m~s~~~WdRFMRFMeRYA~~Ngl~f~k~ 111 (120)
T 2kvo_A 80 ATVILNSQPEWDRFMRFMERYGAENGLGFSKS 111 (120)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHCCSSSCST
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhcCCccccC
Confidence 99999999999999999999999999999985
No 2
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=73.48 E-value=7.6 Score=29.48 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=39.5
Q ss_pred ceeceeEeecCCCCCC-CCCeeEEeccCCCcceEEEEEcCCcccccCCcccceeeEEEEecCceEEeEeceeE-EEcCCc
Q 030062 70 AVKPTIQFIQGTDELT-VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAK-FVNGRP 147 (183)
Q Consensus 70 ~~~asIQFi~GidEe~-iPdVrLtRSrdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI~Tr~V~aK-FvnGkp 147 (183)
|+..+|-| +|-+-.+ -|+..++=.|| -.+.|.-++|.+=-.-. -.-+++.|.....-.|++ ||||+.
T Consensus 2 m~~~s~~~-~~~p~v~l~~~~~~rIGR~---~~~~l~LddpsVs~~HA-------ti~~~~~G~~~l~S~nGtVFVNGqr 70 (102)
T 3uv0_A 2 MADVSLFF-GGLPAILLKADTIYRIGRQ---KGLEISIADESMELAHA-------TACILRRGVVRLAALVGKIFVNDQE 70 (102)
T ss_dssp --CEEEEE-TTSCCEECCTTCCEEEESS---TTSTEECCCTTSCTTCE-------EEEEEETTEEEEEESSSCEEETTEE
T ss_pred cceEEEEE-CCcccEEeecCcEEEEcCC---CCCcEEECCcccccceE-------EEEecCCceEEEEeccCcEEECCEE
Confidence 45577777 6654432 37887777776 34477777776422111 122345555555577887 999965
Q ss_pred c
Q 030062 148 S 148 (183)
Q Consensus 148 ~ 148 (183)
.
T Consensus 71 v 71 (102)
T 3uv0_A 71 E 71 (102)
T ss_dssp E
T ss_pred e
Confidence 4
No 3
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.32 E-value=14 Score=26.54 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.3
Q ss_pred ccceeeEEEEecCceEEeE
Q 030062 118 IGDITGFYMIDEEGTLQSV 136 (183)
Q Consensus 118 ~~~ItGMyLiDEEGeI~Tr 136 (183)
.+.+..|.|.||+|+|..+
T Consensus 38 ~g~~~~~~L~De~G~I~at 56 (114)
T 1ynx_A 38 DGKLFNVNFLDTSGEIRAT 56 (114)
T ss_dssp EEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEEECCCCeEEEE
Confidence 5678889999999987654
No 4
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=46.77 E-value=34 Score=26.51 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=36.9
Q ss_pred CceEEeEeceeEEEcCCcceeEEEEEecCchhHHHHHHHHHhh
Q 030062 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY 172 (183)
Q Consensus 130 EGeI~Tr~V~aKFvnGkp~~iEa~y~m~s~~eWdRFMRFMeRY 172 (183)
++.+.+.+.+.+|+--...++.|...+..+++|++|..=..|.
T Consensus 83 ~~~vv~~~~~I~yl~P~~~~~~a~~~~~~~~~~~~i~~~l~~~ 125 (165)
T 3lmb_A 83 ACNQVVTEGNMKYIAPVYGRIRAICHAPDEEELANFFDHFERK 125 (165)
T ss_dssp CCEEEEEEEEEEECSCCCSCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeEEEEccCccCCeEEEEEeCcHHHHHHHHHHHHhC
Confidence 4789999999999987777899999999999999998765554
No 5
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=31.98 E-value=46 Score=26.05 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=14.0
Q ss_pred ccceeeEEEEecCceEEeE
Q 030062 118 IGDITGFYMIDEEGTLQSV 136 (183)
Q Consensus 118 ~~~ItGMyLiDEEGeI~Tr 136 (183)
.+.+..|.|.||+|+|..+
T Consensus 42 ~g~~~~~~L~De~G~I~at 60 (246)
T 1jmc_A 42 EGKLFSLELVDESGEIRAT 60 (246)
T ss_dssp EEEEEEEEEECSSCEEEEE
T ss_pred CceEEEEEEECCCCeEEEE
Confidence 4567788888998876644
No 6
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.86 E-value=14 Score=26.29 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=27.8
Q ss_pred eEeecCCCCCCCCCeeEEeccCCC-cceEEEEEcCCcccc
Q 030062 75 IQFIQGTDELTVPDVKLTKSRDGS-NGMAIFSFSEPSVFD 113 (183)
Q Consensus 75 IQFi~GidEe~iPdVrLtRSrdG~-~GtA~F~Fe~p~a~~ 113 (183)
.+||... + |-+|+|.+.++|. +|.|...|++++..+
T Consensus 34 ~~~F~~~--~-v~~v~i~~d~~g~~~G~afV~F~~~~~a~ 70 (109)
T 2dnn_A 34 RDFFHGL--R-VDAVHLLKDHVGRNNGNGLVKFLSPQDTF 70 (109)
T ss_dssp HHHTTTS--C-CCEEEECCCTTCCCCSEEEEECSSHHHHH
T ss_pred HHHhccC--C-eeEEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 3577776 3 5799999988864 799999999987443
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=31.14 E-value=53 Score=25.40 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCcCCeeeeecCCCCCccccCCccccceeeceeceeEeecCCCCCC---------------CCCeeEEeccCCC-cceE
Q 030062 39 QSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELT---------------VPDVKLTKSRDGS-NGMA 102 (183)
Q Consensus 39 ~s~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~asIQFi~GidEe~---------------iPdVrLtRSrdG~-~GtA 102 (183)
...+.|..|.+....+...+.... ....=|+.|++..+ |-+|+|.+.++|. +|.|
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~~~~~---------~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~a 229 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLTPALL---------HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFA 229 (284)
T ss_dssp TCEETTEECEEEECCGGGCCTTTT---------SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEE
T ss_pred CCEeCCcEEEEEECCCCCCCcccC---------CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEE
Confidence 456788888776554433221111 12233677777662 5579999988875 8999
Q ss_pred EEEEcCCccc
Q 030062 103 IFSFSEPSVF 112 (183)
Q Consensus 103 ~F~Fe~p~a~ 112 (183)
...|++++.-
T Consensus 230 fV~f~~~~~A 239 (284)
T 3smz_A 230 VLEYETAEMA 239 (284)
T ss_dssp EEECSSHHHH
T ss_pred EEEeCCHHHH
Confidence 9999998744
No 8
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=31.09 E-value=50 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccccCC
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~~~~ 116 (183)
..+|.+.+..+ .|+++++|+.|+..+..+
T Consensus 54 ~~~i~~~~~~~--~gVa~ItlnrP~~~NAl~ 82 (334)
T 3t8b_A 54 LTDITYHRHVD--DATVRVAFNRPEVRNAFR 82 (334)
T ss_dssp CSSEEEEEESS--SSEEEEEECCGGGTTCCC
T ss_pred CceEEEEEecc--CCEEEEEEcCCCCCCCCC
Confidence 56899988754 369999999998765543
No 9
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=29.39 E-value=48 Score=25.91 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=28.4
Q ss_pred ceeEEEcCCc-ceeEEEEEecCchhHHHHHHHHHhhhhhcC
Q 030062 138 VSAKFVNGRP-SRIEAKYIMRSPREWDRFMRFMERYANQNG 177 (183)
Q Consensus 138 V~aKFvnGkp-~~iEa~y~m~s~~eWdRFMRFMeRYAe~NG 177 (183)
|...|.++-+ -.|+-++.+.++..|+||-.+-+...+.||
T Consensus 27 v~~~f~~t~~~~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~ 67 (198)
T 2pqf_A 27 VWNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNG 67 (198)
T ss_dssp HHHHHHTTCTTSEEEEEEEEECHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhCCCCEEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 3334444422 358889999999999999998777666543
No 10
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=27.53 E-value=1.5e+02 Score=20.25 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCCeeEEeccCC-CcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDG-SNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG-~~GtA~F~Fe~p~a~~ 113 (183)
|-+|++.+.++| ..|.|...|+++..-+
T Consensus 62 v~~v~i~~~~~g~~~g~afV~f~~~~~A~ 90 (124)
T 2kt5_A 62 LKKAAVDYDRSGRSLGTADVHFERRADAL 90 (124)
T ss_dssp CSEEEEECCSSSSCCSEEEEEESSHHHHH
T ss_pred eeEEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 567888888866 4789999999987543
No 11
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=27.05 E-value=42 Score=22.89 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.2
Q ss_pred ccceeeEEEEecCceEEeEec
Q 030062 118 IGDITGFYMIDEEGTLQSVDV 138 (183)
Q Consensus 118 ~~~ItGMyLiDEEGeI~Tr~V 138 (183)
...+-.+|++|.+|.|..+.+
T Consensus 111 v~~~P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp CTTCSEEEEECTTCBEEEEEE
T ss_pred CCcCCeEEEECCCCcEEecCC
Confidence 346778999999999998765
No 12
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=26.85 E-value=16 Score=26.93 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=26.7
Q ss_pred EeecCCCCCCCC-CeeEEeccCC-CcceEEEEEcCCcccc
Q 030062 76 QFIQGTDELTVP-DVKLTKSRDG-SNGMAIFSFSEPSVFD 113 (183)
Q Consensus 76 QFi~GidEe~iP-dVrLtRSrdG-~~GtA~F~Fe~p~a~~ 113 (183)
+||... + +++ +|+|.+.++| .+|.|...|++++..+
T Consensus 61 ~~F~~~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~ 98 (126)
T 2hgm_A 61 QFFSGL-E-IVPNGITLPVDPEGKITGEAFVQFASQELAE 98 (126)
T ss_dssp HHTTTS-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHHH
T ss_pred HHHhcC-C-ceeeEEEEEECCCCCCceEEEEEECCHHHHH
Confidence 566665 3 233 8999988886 4799999999998554
No 13
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=25.90 E-value=52 Score=18.56 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=17.8
Q ss_pred eeEEEEecCceEEeEeceeEEEcC
Q 030062 122 TGFYMIDEEGTLQSVDVSAKFVNG 145 (183)
Q Consensus 122 tGMyLiDEEGeI~Tr~V~aKFvnG 145 (183)
.|++++|.+|.|...+-.+.=+.|
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g 26 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFG 26 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHC
T ss_pred ceEEEEcCCCCEeehhHHHHHHhC
Confidence 478999999999876655544445
No 14
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=24.95 E-value=48 Score=23.83 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.4
Q ss_pred eEEEEecCceEEeEec
Q 030062 123 GFYMIDEEGTLQSVDV 138 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V 138 (183)
..|+||++|.|.-+.+
T Consensus 121 ~tflID~~G~I~~~~~ 136 (157)
T 4g2e_A 121 AVFVIDKEGKVRYKWV 136 (157)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred eEEEECCCCEEEEEEE
Confidence 4799999999875543
No 15
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=24.81 E-value=28 Score=26.32 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=30.4
Q ss_pred EeecCCCCC--------------CCCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 76 QFIQGTDEL--------------TVPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 76 QFi~GidEe--------------~iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
-|+.+++.. .|-+|+|.+.++++.|.|...|++++.-+
T Consensus 106 l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 106 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAE 157 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHH
T ss_pred ceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHH
Confidence 378888764 36678999998889999999999987543
No 16
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=24.79 E-value=27 Score=26.79 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.8
Q ss_pred eEEEEecCceEEeEec
Q 030062 123 GFYMIDEEGTLQSVDV 138 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V 138 (183)
-+||+|.||.|.+..-
T Consensus 57 r~~l~d~eG~Il~~~~ 72 (138)
T 3v67_A 57 RVFFSDYNGNVLTTDK 72 (138)
T ss_dssp EEEEECTTSCEECCCC
T ss_pred cEEEEcCCCCEecCCc
Confidence 4899999999998753
No 17
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=24.55 E-value=1.4e+02 Score=19.99 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.8
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|++ ..|.|...|++++.-+
T Consensus 55 v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 55 VAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSEEEE------ETTEEEEECSSSHHHH
T ss_pred eEEEEE------eCCEEEEEECCHHHHH
Confidence 566777 4689999999988543
No 18
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.42 E-value=43 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.9
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|++.+.+++..|.|...|++++.-+
T Consensus 56 i~~v~i~~~~~~~kg~afV~f~~~~~A~ 83 (109)
T 2err_A 56 ILDVEIIFNERGSKGFGFVTFENSADAD 83 (109)
T ss_dssp CSCEEECCBTTBCTTEEEEECCCSHHHH
T ss_pred EEEEEEEECCCCCceEEEEEECCHHHHH
Confidence 6789999888889999999999987543
No 19
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.06 E-value=32 Score=22.83 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+.+++..|.|...|++++.-+
T Consensus 42 v~~v~i~~~~~~~~g~afV~f~~~~~a~ 69 (103)
T 2cq3_A 42 ILDVEIIFNERGSKGFGFVTFENSADAD 69 (103)
T ss_dssp EEEEEEECCTTTTCCEEEEEESCHHHHH
T ss_pred eEEEEEEecCCCCcEEEEEEECCHHHHH
Confidence 4578888888889999999999987554
No 20
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.86 E-value=49 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCCeeEEeccCCC-cceEEEEEcCCccc
Q 030062 86 VPDVKLTKSRDGS-NGMAIFSFSEPSVF 112 (183)
Q Consensus 86 iPdVrLtRSrdG~-~GtA~F~Fe~p~a~ 112 (183)
|-+|+|.+.++|. .|.|...|++++.-
T Consensus 42 i~~~~i~~~~~g~~~g~afV~f~~~~~a 69 (114)
T 2do0_A 42 VVRADILEDKDGKSRGIGTVTFEQSIEA 69 (114)
T ss_dssp EEEEEEEECTTCSEEEEEEEEESSHHHH
T ss_pred eEEEEEEECCCCCeeeEEEEEECCHHHH
Confidence 4578888888764 68999999998644
No 21
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=23.75 E-value=98 Score=21.17 Aligned_cols=62 Identities=10% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCCcCCeeeeecCCCCCccccCCccccceeeceeceeEeecCCCCC--------------CCCCeeEEecc-CCC-cceE
Q 030062 39 QSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDEL--------------TVPDVKLTKSR-DGS-NGMA 102 (183)
Q Consensus 39 ~s~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~asIQFi~GidEe--------------~iPdVrLtRSr-dG~-~GtA 102 (183)
+..+.|..|++....+...... ..-=|+.|++.. .|.+|++.+.+ +|. .|.|
T Consensus 66 ~~~~~g~~l~v~~~~~~~~~~~------------~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a 133 (167)
T 1fxl_A 66 GLRLQTKTIKVSYARPSSASIR------------DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 133 (167)
T ss_dssp TCEETTEECEEEECCCCCGGGT------------TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred CCccCCceEEEEecCCCcccCC------------CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceE
Confidence 3567788887765444322111 111366677654 25578888876 343 6889
Q ss_pred EEEEcCCccc
Q 030062 103 IFSFSEPSVF 112 (183)
Q Consensus 103 ~F~Fe~p~a~ 112 (183)
...|++++.-
T Consensus 134 fV~f~~~~~A 143 (167)
T 1fxl_A 134 FIRFDKRIEA 143 (167)
T ss_dssp EEEESSHHHH
T ss_pred EEEeCCHHHH
Confidence 9999998743
No 22
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=23.09 E-value=71 Score=20.30 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=20.9
Q ss_pred CCCeeEEeccCCC--cceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGS--NGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~--~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+.++.+ .|.|...|++++.-+
T Consensus 38 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 67 (87)
T 3s7r_A 38 VVDCTIKMDPNTGRSRGFGFILFKDAASVE 67 (87)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSTHHHH
T ss_pred EEEEEEeecCCCCccccEEEEEECCHHHHH
Confidence 5578888877532 678999999988543
No 23
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.78 E-value=33 Score=22.76 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=23.0
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+.++++.|.|...|+++..-+
T Consensus 42 i~~v~i~~~~~~~~g~afV~f~~~~~a~ 69 (103)
T 2cqi_A 42 CKSCKMITEHTSNDPYCFVEFYEHRDAA 69 (103)
T ss_dssp EEEEEEECCCCSSCCEEEEEESSHHHHH
T ss_pred EeEEEEEecCCCCCCEEEEEECCHHHHH
Confidence 4568888888888999999999987543
No 24
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.71 E-value=78 Score=22.90 Aligned_cols=45 Identities=27% Similarity=0.457 Sum_probs=34.5
Q ss_pred eceeEEEcCCcceeEEEEEecCchhHHHHHHHHHhhhhhcCcceec
Q 030062 137 DVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 182 (183)
Q Consensus 137 ~V~aKFvnGkp~~iEa~y~m~s~~eWdRFMRFMeRYAe~NGL~f~k 182 (183)
++..|||.- --.+|..|.-..+.+-+.|-|=||..|+..|....|
T Consensus 17 eialkfisq-gldlevefdstddkeieeferdmedlakktgvqiqk 61 (83)
T 2ln3_A 17 EIALKFISQ-GLDLEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQK 61 (83)
T ss_dssp HHHHHHHHH-TCEEEEEECCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhc-CCceEEEecCCChHHHHHHHhHHHHHHHhhchhHHH
Confidence 345677732 134777787777888999999999999999988765
No 25
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.57 E-value=81 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=21.0
Q ss_pred CC-CeeEEeccCC--CcceEEEEEcCCcccc
Q 030062 86 VP-DVKLTKSRDG--SNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iP-dVrLtRSrdG--~~GtA~F~Fe~p~a~~ 113 (183)
|- +|++.+.++. ..|.|...|++++.-+
T Consensus 36 i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 66 (99)
T 2div_A 36 TVMSVKIIRNRLTGIPAGYCFVEFADLATAE 66 (99)
T ss_dssp CCCEEEEEECSSSCCEEEEEEEECSCHHHHH
T ss_pred cceEEEEeecCCCCCcCCEEEEEeCCHHHHH
Confidence 44 8889888743 3489999999987543
No 26
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=21.87 E-value=1.3e+02 Score=19.94 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=25.0
Q ss_pred cceeeEEEEecCceEEeEeceeEEEcCCcceeEEEEEecCchhHHHHHHHHHhh
Q 030062 119 GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY 172 (183)
Q Consensus 119 ~~ItGMyLiDEEGeI~Tr~V~aKFvnGkp~~iEa~y~m~s~~eWdRFMRFMeRY 172 (183)
..+-.++++|.+|.|..+.+ ..++++.++..+++.
T Consensus 110 ~~~P~~~lid~~G~i~~~~~-------------------g~~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRI-------------------GYENLDDFLVQYEKS 144 (148)
T ss_dssp CSSCEEEEECTTCBEEEESC-------------------CGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecC-------------------CHHHHHHHHHHHHHH
Confidence 35667899999999886532 236778887777654
No 27
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.77 E-value=50 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.0
Q ss_pred EeecCCCCCCCCCeeEEeccCCC-cceEEEEEcCCcccc
Q 030062 76 QFIQGTDELTVPDVKLTKSRDGS-NGMAIFSFSEPSVFD 113 (183)
Q Consensus 76 QFi~GidEe~iPdVrLtRSrdG~-~GtA~F~Fe~p~a~~ 113 (183)
+||...- . + +|+|.+.++|. +|.|...|++++..+
T Consensus 34 ~~F~~~G-~-~-~v~i~~d~~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 34 NFFSPLN-P-M-RVHIEIGPDGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp HSSCSCC-C-S-EEEEEESSSSCEEEEEEEECSSSHHHH
T ss_pred HHHHHcC-c-e-EEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 5565554 2 3 89999988764 689999999987553
No 28
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.62 E-value=34 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCCeeEEeccCCC-cceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGS-NGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~-~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+.++|. +|.|...|++++..+
T Consensus 47 v~~v~i~~~~~g~~~G~afV~F~~~~~a~ 75 (118)
T 2db1_A 47 VAGVHFIYTREGRQSGEAFVELESEDDVK 75 (118)
T ss_dssp GGGEEEEECSSSCEEEEEEEEBSSHHHHH
T ss_pred ceeEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 6789999998864 789999999987554
No 29
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=21.43 E-value=1e+02 Score=21.64 Aligned_cols=28 Identities=11% Similarity=0.263 Sum_probs=22.7
Q ss_pred cCceEEeEeceeEEEcCCcceeEEEEEe
Q 030062 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIM 156 (183)
Q Consensus 129 EEGeI~Tr~V~aKFvnGkp~~iEa~y~m 156 (183)
++|+-..+=...+++||.|-.+|-.|+=
T Consensus 32 ~~~~~v~~i~Rlr~~d~~P~~~~~~ylp 59 (143)
T 3lhe_A 32 SVGDFVYKIIRLRIIHSIPTIMEHTWMP 59 (143)
T ss_dssp CTTCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEECCcEEEEEEEEee
Confidence 3566666667889999999999999984
No 30
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=21.26 E-value=99 Score=24.13 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=29.9
Q ss_pred cCCCcceEEEEEcCCcccccCCcccceeeEEEEec
Q 030062 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDE 129 (183)
Q Consensus 95 rdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDE 129 (183)
+-|..+.+.+.+++|=++|.+.+......+-|+|+
T Consensus 153 ~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~ 187 (204)
T 3e1y_E 153 KQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 187 (204)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS
T ss_pred CCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC
Confidence 35888999999999999999876777777888888
No 31
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=21.23 E-value=89 Score=19.74 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.1
Q ss_pred CCCeeEEeccC-C-CcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRD-G-SNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrd-G-~~GtA~F~Fe~p~a~~ 113 (183)
|-+|++.+.++ | ..|.|...|++++..+
T Consensus 33 i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 62 (89)
T 3ucg_A 33 VNRVTILCDKFSGHPKGFAYIEFSDKESVR 62 (89)
T ss_dssp EEEEEEEESCSSSSCCEEEEEEESSTHHHH
T ss_pred EEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 56788888763 3 3789999999997543
No 32
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=21.16 E-value=59 Score=23.71 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=23.2
Q ss_pred eEEEEecCceEEeEeceeEEEcCCcceeEEEEEecCchhHHHHHHHHHhhhhh
Q 030062 123 GFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQ 175 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V~aKFvnGkp~~iEa~y~m~s~~eWdRFMRFMeRYAe~ 175 (183)
+.|+||.+|.|.-+.+ +..|. ...+.|..+|-.++-+.+
T Consensus 123 ~tflID~~G~I~~~~~-----~~~~~---------~~~~~~eil~~l~~l~~e 161 (164)
T 4gqc_A 123 AVFIVKPDGTVAYKWV-----TDNPL---------NEPDYDEVVREANKIAGE 161 (164)
T ss_dssp EEEEECTTSBEEEEEE-----CSCTT---------CCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEEE-----eCCCC---------CCCCHHHHHHHHHHHhcc
Confidence 4689999998875533 22221 223466677776665543
No 33
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=21.13 E-value=63 Score=27.49 Aligned_cols=55 Identities=11% Similarity=0.268 Sum_probs=32.7
Q ss_pred CCCCCCCCeeEEecc--CCCcceEEEEEcCCcccccCCcccceeeEEEEecCceEEeE
Q 030062 81 TDELTVPDVKLTKSR--DGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSV 136 (183)
Q Consensus 81 idEe~iPdVrLtRSr--dG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI~Tr 136 (183)
+.+.+.|-++|+-.= .|.+|..++.|.....-..+. ...-++.+-||..|+|.+.
T Consensus 4 ~~~~~~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~-I~~~~~~f~v~~tG~i~~~ 60 (419)
T 3ubh_A 4 VTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFK-IRDDNPWVTVETNGAVRVK 60 (419)
T ss_dssp --CCEEEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEE-ESSCCSSEEECTTSEEEES
T ss_pred cccCccceEEEEEEcccCCCCceEEEEEecCCCCceEE-EcCCCccEEECCCcEEEEC
Confidence 455667767766433 388999999997654322222 2223455666677888765
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=21.10 E-value=31 Score=23.82 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+.++++.|.|...|++++.-+
T Consensus 32 v~~v~i~~d~~~~kg~afV~f~~~~~A~ 59 (115)
T 4f25_A 32 ILSCKVVCDENGSKGYGFVHFETQEAAE 59 (115)
T ss_dssp EEEEEEEEETTEEEEEEEEEESCHHHHH
T ss_pred EEEEEEeecCCCCCceEEEEECCHHHHH
Confidence 4568899988888999999999987543
No 35
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=20.65 E-value=49 Score=26.98 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=19.2
Q ss_pred cCchhHHHHH-HHHHhhhhhcCcce
Q 030062 157 RSPREWDRFM-RFMERYANQNGLQF 180 (183)
Q Consensus 157 ~s~~eWdRFM-RFMeRYAe~NGL~f 180 (183)
...+..||.| .|.+||.+.|-=.|
T Consensus 106 gEaQ~IdRile~Fa~ry~~~Np~~f 130 (203)
T 1r8s_E 106 GKAQKIDRMMEAFAQRYCLCNPGVF 130 (203)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred CchHHHHHHHHHHHHHHHHhCCccc
Confidence 3457899999 89999999996444
No 36
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=20.44 E-value=91 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=23.5
Q ss_pred ceeEEEEEecCchhHHHHHHHHHhhhhhc
Q 030062 148 SRIEAKYIMRSPREWDRFMRFMERYANQN 176 (183)
Q Consensus 148 ~~iEa~y~m~s~~eWdRFMRFMeRYAe~N 176 (183)
-.|+-++-+.++..|+||-++-+.-.+.|
T Consensus 35 ~~I~~I~rI~n~~l~~~f~~~k~~~~~k~ 63 (193)
T 3smj_A 35 FRIEKIERIQNPDLWNSYQAKKKTMDAKN 63 (193)
T ss_dssp SEEEEEEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CeEEEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 46888999999999999999876655444
No 37
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=20.34 E-value=42 Score=23.51 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCCcceEEEEEcCCcccccCCcccceeeEEEEec-CceEEeE
Q 030062 96 DGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDE-EGTLQSV 136 (183)
Q Consensus 96 dG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDE-EGeI~Tr 136 (183)
+|.+|..++.+....+ .....++|-||. -|+|.+.
T Consensus 32 ~g~N~~i~Ysi~~~~~------~~~~~~~F~Id~~tG~I~~~ 67 (105)
T 2omz_B 32 KDKEGKVFYSITGQGA------DTPPVGVFIIERETGWLKVT 67 (105)
T ss_dssp GGGSSCCEEEEEEBTT------TBSSTTSEEECTTTCEEEEC
T ss_pred CCCCCeEEEEEeCCCC------CCCccCEEEEeCCCCEEEEC
Confidence 4778888888754321 112356777876 4877764
No 38
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=20.01 E-value=95 Score=22.81 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=30.7
Q ss_pred eeEEEcCCcceeEEEEEec-----CchhHHHHHHHHHhhhhhcCccee
Q 030062 139 SAKFVNGRPSRIEAKYIMR-----SPREWDRFMRFMERYANQNGLQFV 181 (183)
Q Consensus 139 ~aKFvnGkp~~iEa~y~m~-----s~~eWdRFMRFMeRYAe~NGL~f~ 181 (183)
+-||+.|.+-.-=+.+... ++++.+.|++-+.+-+...||.+.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~ 49 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQ 49 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3467777654434444443 566889999999999999999875
Done!