Query 030062
Match_columns 183
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 12:35:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030062.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030062hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zunb2 b.44.1.1 (B:330-434) S 64.6 4.8 0.00035 27.4 4.7 39 95-133 58-97 (105)
2 d2ghpa2 d.58.7.1 (A:41-115) U4 58.6 2.1 0.00015 27.0 1.7 28 86-113 27-54 (75)
3 d1nija2 d.237.1.1 (A:224-318) 55.9 4.5 0.00033 26.7 3.1 25 153-177 5-29 (95)
4 d1jnya2 b.44.1.1 (A:323-429) E 51.3 11 0.0008 25.2 4.7 38 95-133 59-96 (107)
5 d1jmca1 b.40.4.3 (A:183-298) R 49.0 9 0.00066 25.9 3.9 18 118-135 36-53 (116)
6 d1r57a_ d.108.1.1 (A:) Hypothe 41.4 41 0.003 22.0 6.4 59 120-179 9-70 (102)
7 d1v9ya_ d.110.3.2 (A:) Direct 36.4 10 0.00075 22.8 2.3 25 121-145 11-35 (113)
8 d1gsoa3 d.142.1.2 (A:104-327) 36.0 9.5 0.00069 28.6 2.5 25 123-149 169-193 (224)
9 d1xj3a1 d.110.3.2 (A:154-259) 34.0 12 0.00089 22.1 2.3 23 123-145 2-24 (106)
10 d1l3wa1 b.1.6.1 (A:1-100) C-ca 32.5 23 0.0017 22.6 3.8 38 92-135 24-62 (100)
11 d3dxoa1 d.17.4.19 (A:1-117) Un 31.7 6.7 0.00049 25.5 0.9 57 73-136 49-111 (117)
12 d1ohpa1 d.17.4.3 (A:1-125) Del 31.1 5.3 0.00038 25.2 0.2 60 75-135 52-111 (125)
13 d1e2ya_ c.47.1.10 (A:) Trypare 30.5 15 0.0011 25.3 2.7 17 121-137 124-140 (167)
14 d1q52a_ c.14.1.3 (A:) Naphthoa 30.5 26 0.0019 26.4 4.3 29 86-116 17-45 (297)
15 d1uawa_ d.58.7.1 (A:) Musashi- 29.3 18 0.0013 22.3 2.7 28 86-113 27-56 (77)
16 d2gvia2 g.39.1.18 (A:169-201) 27.3 9.9 0.00072 22.2 1.0 14 135-148 13-26 (33)
17 d2cq3a1 d.58.7.1 (A:110-202) R 27.2 12 0.00086 23.8 1.5 28 86-113 38-65 (93)
18 d1qxha_ c.47.1.10 (A:) Thiol p 26.7 18 0.0013 25.1 2.5 16 123-138 133-148 (164)
19 d1we0a1 c.47.1.10 (A:1-166) Al 26.5 19 0.0014 25.3 2.7 17 122-138 120-136 (166)
20 d2pkha1 d.190.1.2 (A:109-249) 26.5 32 0.0023 22.5 3.7 27 129-155 25-51 (141)
21 d1f60a2 b.44.1.1 (A:335-441) E 25.5 49 0.0036 22.5 4.7 39 95-133 59-97 (107)
22 d1xvwa1 c.47.1.10 (A:1-153) Pu 25.0 21 0.0016 23.8 2.6 14 123-136 117-130 (153)
23 d2b7ka1 c.47.1.10 (A:111-279) 24.2 20 0.0014 22.9 2.2 16 121-136 130-145 (169)
24 d3cdda2 b.106.1.1 (A:2-180) Ba 22.6 42 0.0031 22.9 3.9 34 144-181 134-168 (179)
25 d1r7aa1 b.71.1.1 (A:435-504) S 21.6 93 0.0068 20.5 5.2 52 87-139 12-63 (70)
26 d1hd0a_ d.58.7.1 (A:) Heteroge 20.9 19 0.0014 22.0 1.4 28 86-113 26-55 (75)
27 d1q98a_ c.47.1.10 (A:) Thiol p 20.5 29 0.0021 24.1 2.5 16 123-138 131-146 (164)
28 d1wp0a1 c.47.1.10 (A:138-297) 20.2 23 0.0017 22.8 1.9 13 122-134 125-137 (160)
No 1
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=64.59 E-value=4.8 Score=27.40 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=33.9
Q ss_pred cCCCcceEEEEEcCCcccccCCcccceeeEEEEecC-ceE
Q 030062 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE-GTL 133 (183)
Q Consensus 95 rdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEE-GeI 133 (183)
+-+..|.+.+..++|=++|...+....+.+-|||++ |+.
T Consensus 58 ~~Ndi~~v~i~~~~~i~~d~y~~n~~~G~fiLiD~~~~~T 97 (105)
T d1zunb2 58 QLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGT 97 (105)
T ss_dssp CTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCCE
T ss_pred CCccEEEEEEEECCccccCccccCcCceeEEEEECCCCCE
Confidence 448889999999999999999888899999999986 443
No 2
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=58.60 E-value=2.1 Score=26.95 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.7
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+++++++|.|...|++++..+
T Consensus 27 I~~v~~~~~~~~~~~~afV~F~~~~~a~ 54 (75)
T d2ghpa2 27 IIHVDVADSLKKNFRFARIEFARYDGAL 54 (75)
T ss_dssp EEEEEEEECTTSSSEEEEEEESSHHHHH
T ss_pred eEEEEEEeeccccceEEEEEEcchHHhH
Confidence 5679999999999999999999988654
No 3
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.88 E-value=4.5 Score=26.66 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.8
Q ss_pred EEEecCchhHHHHHHHHHhhhhhcC
Q 030062 153 KYIMRSPREWDRFMRFMERYANQNG 177 (183)
Q Consensus 153 ~y~m~s~~eWdRFMRFMeRYAe~NG 177 (183)
+|..+.|-+|+||+.||+....++|
T Consensus 5 ~~~~~~P~d~~~f~~~l~~ll~~~~ 29 (95)
T d1nija2 5 VVELDYPVDISEVSRVMENLLLESA 29 (95)
T ss_dssp EEEESSCBCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 6788889999999999999877665
No 4
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=51.27 E-value=11 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=32.1
Q ss_pred cCCCcceEEEEEcCCcccccCCcccceeeEEEEecCceE
Q 030062 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133 (183)
Q Consensus 95 rdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI 133 (183)
+.|..+.+.|.|++|=.++.+.+.....-+.|+|+ |..
T Consensus 59 ~~g~~a~v~i~~~~~i~~e~~~~~~~lGrfilrd~-g~T 96 (107)
T d1jnya2 59 KQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM-GKT 96 (107)
T ss_dssp CTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET-TEE
T ss_pred cCCceEEEEEEcCCceEEeecccCCCcCCEEEEEC-Cce
Confidence 46999999999999999998877778888888885 543
No 5
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.01 E-value=9 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=13.3
Q ss_pred ccceeeEEEEecCceEEe
Q 030062 118 IGDITGFYMIDEEGTLQS 135 (183)
Q Consensus 118 ~~~ItGMyLiDEEGeI~T 135 (183)
.+.+-.|.|.||+|+|..
T Consensus 36 ~g~v~~~~l~De~G~I~~ 53 (116)
T d1jmca1 36 EGKLFSLELVDESGEIRA 53 (116)
T ss_dssp EEEEEEEEEECSSCEEEE
T ss_pred CceEEEEEEEcCCCCEEE
Confidence 456778888888887654
No 6
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=41.38 E-value=41 Score=22.02 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=36.0
Q ss_pred ceeeEEEEecCceEEeEeceeEEEcCCcceeEEEEEecC---chhHHHHHHHHHhhhhhcCcc
Q 030062 120 DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRS---PREWDRFMRFMERYANQNGLQ 179 (183)
Q Consensus 120 ~ItGMyLiDEEGeI~Tr~V~aKFvnGkp~~iEa~y~m~s---~~eWdRFMRFMeRYAe~NGL~ 179 (183)
....+|+.+.||++.-. +..+...++--.|.-+++-.+ .--=.+.|.++..||.++|+.
T Consensus 9 ~~~~f~v~~~~g~~vg~-~~~~~~~~~~~~i~~~~V~p~~RG~Gig~~Lv~~~l~~Ar~~g~k 70 (102)
T d1r57a_ 9 GENKFYIGDDENNALAE-ITYRFVDNNEINIDHTGVSDELGGQGVGKKLLKAVVEHARENNLK 70 (102)
T ss_dssp ETTEEEEESSSTTEEEE-EEEEESSSSEEEEEEEEECCSSSTTCTHHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEEEeCCceEEE-EEEEEcCCCEEEEEEEEEChHHCCccHHHHHHHHHHHHHHHCCCE
Confidence 34568899999888633 222333222222444444222 223478999999999999984
No 7
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=36.38 E-value=10 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.0
Q ss_pred eeeEEEEecCceEEeEeceeEEEcC
Q 030062 121 ITGFYMIDEEGTLQSVDVSAKFVNG 145 (183)
Q Consensus 121 ItGMyLiDEEGeI~Tr~V~aKFvnG 145 (183)
.-|++++|++|.|.-.+-.+.=+.|
T Consensus 11 ~d~i~~~d~~g~i~~~N~~~~~l~G 35 (113)
T d1v9ya_ 11 MMGAVLINENDEVMFFNPAAEKLWG 35 (113)
T ss_dssp SSEEEEECTTSBEEEECHHHHHHHS
T ss_pred cCcEEEEeCCCCEEEEchhHhhhhc
Confidence 4599999999999887776665555
No 8
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Probab=35.98 E-value=9.5 Score=28.56 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.2
Q ss_pred eEEEEecCceEEeEeceeEEEcCCcce
Q 030062 123 GFYMIDEEGTLQSVDVSAKFVNGRPSR 149 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V~aKFvnGkp~~ 149 (183)
+=+|+|++|++-.-|+|++| |.|+.
T Consensus 169 ~~~mit~~G~p~vlE~N~R~--Gdpe~ 193 (224)
T d1gsoa3 169 AGLMIDKQGNPKVIEFNCRF--GDLET 193 (224)
T ss_dssp EEEEEETTCCEEEEEEESSC--CTTTH
T ss_pred cceeeeeCCCEEEEEEecCC--CCCcc
Confidence 34689999999999999999 88887
No 9
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=33.95 E-value=12 Score=22.07 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.1
Q ss_pred eEEEEecCceEEeEeceeEEEcC
Q 030062 123 GFYMIDEEGTLQSVDVSAKFVNG 145 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V~aKFvnG 145 (183)
|++++|++|.|...+-.+.=+.|
T Consensus 2 gi~~~D~~G~I~~~N~a~~~l~G 24 (106)
T d1xj3a1 2 AMIVIDGHGIIQLFSTAAERLFG 24 (106)
T ss_dssp CEEEEETTSBEEEECHHHHHHHC
T ss_pred EEEEECCCCcEEEEcHHHHHHhh
Confidence 79999999999988777666666
No 10
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=32.49 E-value=23 Score=22.65 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=22.7
Q ss_pred EeccCCCcceEEEEEcCCcccccCCcccceeeEEEEecC-ceEEe
Q 030062 92 TKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE-GTLQS 135 (183)
Q Consensus 92 tRSrdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEE-GeI~T 135 (183)
+.+-++.+|...|.+..+..= ..-.++|-||.. |+|.+
T Consensus 24 ~~~D~~~n~~i~Y~i~~~~~~------~~~~~~F~Id~~tG~I~~ 62 (100)
T d1l3wa1 24 IKSNKDRFNKVYYSITGQGAD------NPPQGVFRIEWETGWMLV 62 (100)
T ss_dssp CCCSGGGSSCEEEEEEEBTTT------BSSTTSEEECTTTCEEEE
T ss_pred EECCCCCCCcEEEEEEeCCCC------CCccccEEEeCCCCEEEE
Confidence 344457788888888754321 112346666666 77766
No 11
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=31.75 E-value=6.7 Score=25.50 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=34.4
Q ss_pred ceeEeecCCCCCCCCCeeEEec--cCCCcceEEEEE--cCCcccccCCcccceeeEEEE--ecCceEEeE
Q 030062 73 PTIQFIQGTDELTVPDVKLTKS--RDGSNGMAIFSF--SEPSVFDSSGEIGDITGFYMI--DEEGTLQSV 136 (183)
Q Consensus 73 asIQFi~GidEe~iPdVrLtRS--rdG~~GtA~F~F--e~p~a~~~~~~~~~ItGMyLi--DEEGeI~Tr 136 (183)
+-.+|++++-+. +|+++++.- -++....+.+.+ .-+. . .-.+.|+-++ |++|.|...
T Consensus 49 ai~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~w~~~~~~-----~-~~~~~G~d~~~~~~dGkI~~~ 111 (117)
T d3dxoa1 49 GIAAMIEAARQK-FPGYRFVLAGTPDGHGNFTRFSWRLISPD-----G-DDVAGGTDVVSLNTEGRIDNV 111 (117)
T ss_dssp HHHHHHHHHHHH-STTCEEEEEEEEEEETTEEEEEEEEECTT-----S-CEEEEEEEEEEECTTSSEEEE
T ss_pred HHHHHHHHHHHh-CCCcEEEEEEEEecCCCEEEEEEEEecCC-----C-CeEEEEEEEEEECCCCCEEEE
Confidence 455677777777 788887643 334444554444 3321 1 2346776665 789999753
No 12
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=31.11 E-value=5.3 Score=25.18 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=30.9
Q ss_pred eEeecCCCCCCCCCeeEEeccCCCcceEEEEEcCCcccccCCcccceeeEEEEecCceEEe
Q 030062 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQS 135 (183)
Q Consensus 75 IQFi~GidEe~iPdVrLtRSrdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI~T 135 (183)
.+|+++.... .|++.++.......+.+.+.+.---........-....++-+|++|.|+-
T Consensus 52 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~dGkI~~ 111 (125)
T d1ohpa1 52 REFYANSLKL-PLAVELTQEVRAVANEAAFAFIVSFEYQGRKTVVAPIDHFRFNGAGKVVS 111 (125)
T ss_dssp HHHHHHHTSS-CCEEEECSCCEEETTEEEEEEEEEEEETTEEEEECCEEEEEECTTSCEEE
T ss_pred HHHHHHHhhc-CCceEEEEEEEEecceEEEEEEEEEecCCceEEEEEEEEEEECCCCeEEE
Confidence 3455665554 67766665554444555544432111111111223455666789998864
No 13
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=30.54 E-value=15 Score=25.32 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=13.3
Q ss_pred eeeEEEEecCceEEeEe
Q 030062 121 ITGFYMIDEEGTLQSVD 137 (183)
Q Consensus 121 ItGMyLiDEEGeI~Tr~ 137 (183)
+-+.|+||++|.|...-
T Consensus 124 ~r~tfvID~~G~Ir~~~ 140 (167)
T d1e2ya_ 124 YRGVFIIDPNGKLRQII 140 (167)
T ss_dssp CEEEEEECTTSBEEEEE
T ss_pred eeEEEEECCCCEEEEEE
Confidence 34789999999996553
No 14
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.48 E-value=26 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccccCC
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~~~~ 116 (183)
..||.++|+.|+ |+|+++|+.|+.++..+
T Consensus 17 ~~~i~~~~~~~~--gi~~ItlnRP~~~NAl~ 45 (297)
T d1q52a_ 17 LTDITYHRHVDD--ATVRVAFNRPEVRNAFR 45 (297)
T ss_dssp CSSEEEEEESSS--SEEEEEECCGGGTTCCC
T ss_pred CcceEEEEEccC--CEEEEEECCCCcCCCCC
Confidence 478899988764 89999999998876553
No 15
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.34 E-value=18 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCeeEEeccC-C-CcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRD-G-SNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrd-G-~~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|-+.++ | ..|.|...|++++..+
T Consensus 27 i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~ 56 (77)
T d1uawa_ 27 VKECLVMRDPLTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp CCCEEEECCCCSSSCSSEEEECCCCTTHHH
T ss_pred cceeeeecccCCCCccceEEEEECCHHHHH
Confidence 67889988775 4 4689999999988654
No 16
>d2gvia2 g.39.1.18 (A:169-201) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=27.34 E-value=9.9 Score=22.16 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=11.8
Q ss_pred eEeceeEEEcCCcc
Q 030062 135 SVDVSAKFVNGRPS 148 (183)
Q Consensus 135 Tr~V~aKFvnGkp~ 148 (183)
|-+..+|.+||||.
T Consensus 13 tyeadakllngkpv 26 (33)
T d2gvia2 13 TYEADAKLLNGKPV 26 (33)
T ss_dssp EEGGGCEEETTEEE
T ss_pred eeccchhhhCCCcc
Confidence 56788999999984
No 17
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.25 E-value=12 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrdG~~GtA~F~Fe~p~a~~ 113 (183)
|-+|+|.+++.+..|.|...|++++..+
T Consensus 38 v~~v~~~~~~~~~kg~afV~f~~~~~a~ 65 (93)
T d2cq3a1 38 ILDVEIIFNERGSKGFGFVTFENSADAD 65 (93)
T ss_dssp EEEEEEECCTTTTCCEEEEEESCHHHHH
T ss_pred eeeccccccccCCcceeEEEECCHHHHH
Confidence 4578899999999999999999988654
No 18
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}
Probab=26.75 E-value=18 Score=25.11 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=12.7
Q ss_pred eEEEEecCceEEeEec
Q 030062 123 GFYMIDEEGTLQSVDV 138 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V 138 (183)
..|+||++|.|.-..+
T Consensus 133 a~fvID~~G~I~y~~~ 148 (164)
T d1qxha_ 133 AVVVIDENDNVIFSQL 148 (164)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEEcCCCEEEEEEE
Confidence 3699999999985544
No 19
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}
Probab=26.53 E-value=19 Score=25.31 Aligned_cols=17 Identities=29% Similarity=0.878 Sum_probs=13.5
Q ss_pred eeEEEEecCceEEeEec
Q 030062 122 TGFYMIDEEGTLQSVDV 138 (183)
Q Consensus 122 tGMyLiDEEGeI~Tr~V 138 (183)
-+.|+||++|.|.-..+
T Consensus 120 r~tfvID~~G~I~~~~i 136 (166)
T d1we0a1 120 RGTFIIDPDGVIQAIEI 136 (166)
T ss_dssp EEEEEECTTSBEEEEEE
T ss_pred ceEEEECCCCcEEEEEE
Confidence 45799999999976644
No 20
>d2pkha1 d.190.1.2 (A:109-249) Histidine utilization repressor HutC {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=26.50 E-value=32 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.9
Q ss_pred cCceEEeEeceeEEEcCCcceeEEEEE
Q 030062 129 EEGTLQSVDVSAKFVNGRPSRIEAKYI 155 (183)
Q Consensus 129 EEGeI~Tr~V~aKFvnGkp~~iEa~y~ 155 (183)
++|+-..+=....++||.|-.+|-.|.
T Consensus 25 ~~~~~v~~i~Rlr~~d~~P~~~~~~y~ 51 (141)
T d2pkha1 25 REGQRVFHSLIVHFENDIPVQIEDRFV 51 (141)
T ss_dssp CTTSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEccCCEEEEEEEEEe
Confidence 456666777788999999999999997
No 21
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.51 E-value=49 Score=22.52 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=33.3
Q ss_pred cCCCcceEEEEEcCCcccccCCcccceeeEEEEecCceE
Q 030062 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133 (183)
Q Consensus 95 rdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI 133 (183)
+.|...++.|...+|-.+|.+.+.....-+-|.|+--.|
T Consensus 59 ~~g~~a~v~i~~~~pi~vE~~~~~p~LGRf~lRd~g~TV 97 (107)
T d1f60a2 59 KSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTV 97 (107)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEE
T ss_pred CCCCEEEEEEEeCCCCEEeeccCCCCceeEEEEECCCEE
Confidence 468999999999999999999888888888888876444
No 22
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.96 E-value=21 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.4
Q ss_pred eEEEEecCceEEeE
Q 030062 123 GFYMIDEEGTLQSV 136 (183)
Q Consensus 123 GMyLiDEEGeI~Tr 136 (183)
+.|+||++|.|.-.
T Consensus 117 ~tfvID~~G~I~~~ 130 (153)
T d1xvwa1 117 GTFVVDRSGIIRFA 130 (153)
T ss_dssp EEEEECTTSBEEEE
T ss_pred eEEEECCCCEEEEE
Confidence 47999999999644
No 23
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.19 E-value=20 Score=22.88 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.9
Q ss_pred eeeEEEEecCceEEeE
Q 030062 121 ITGFYMIDEEGTLQSV 136 (183)
Q Consensus 121 ItGMyLiDEEGeI~Tr 136 (183)
....||||.+|.|.-+
T Consensus 130 ~~~~fLID~~G~vv~~ 145 (169)
T d2b7ka1 130 SIFFYLMDPEGQFVDA 145 (169)
T ss_dssp CCCEEEECTTSCEEEE
T ss_pred cceEEEECCCCeEEEE
Confidence 3568999999998754
No 24
>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella oneidensis [TaxId: 70863]}
Probab=22.56 E-value=42 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=23.4
Q ss_pred cCCcceeEEEEEec-CchhHHHHHHHHHhhhhhcCccee
Q 030062 144 NGRPSRIEAKYIMR-SPREWDRFMRFMERYANQNGLQFV 181 (183)
Q Consensus 144 nGkp~~iEa~y~m~-s~~eWdRFMRFMeRYAe~NGL~f~ 181 (183)
.+.+....-.|.+. .+.+| .|++|.|+++|+-|.
T Consensus 134 ~~~~~~~~~~~~~q~~Esd~----~fl~Rla~~~G~~~~ 168 (179)
T d3cdda2 134 NTDVGEPFQRIQIEQGETPH----ELLARLAKQRGVLLT 168 (179)
T ss_dssp CSCCCSCEEEEECCTTCCHH----HHHHHHHHTTTCEEE
T ss_pred ecccccCccceEeecCCcHH----HHHHHHHHHCCCEEE
Confidence 34444556678765 55565 589999999998663
No 25
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=21.62 E-value=93 Score=20.46 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCeeEEeccCCCcceEEEEEcCCcccccCCcccceeeEEEEecCceEEeEece
Q 030062 87 PDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVS 139 (183)
Q Consensus 87 PdVrLtRSrdG~~GtA~F~Fe~p~a~~~~~~~~~ItGMyLiDEEGeI~Tr~V~ 139 (183)
-|-+++=+-.|-+-+|+++|+--+-+.-.+ ...+..+--.|.-|+-.|+|.-
T Consensus 12 ~DtSI~F~W~g~~s~AtLTFeP~~GlGv~N-t~~VA~L~W~D~aG~H~tdDLi 63 (70)
T d1r7aa1 12 DDTSISFTWRGETSQATLTFEPKRGLGVDN-TTPVAMLEWEDSAGDHRSDDLI 63 (70)
T ss_dssp TTTEEEEEEECSSCEEEEEECGGGSCSTTC-CSCCEEEEEEETTEEEEESCTT
T ss_pred CCcEEEEEEecccceEEEEEcCCccccccC-CceeeEEEEeccCCCccccccc
Confidence 345677777889999999999888886654 6688888899999999988753
No 26
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.92 E-value=19 Score=22.00 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=21.4
Q ss_pred CCCeeEEeccC-C-CcceEEEEEcCCcccc
Q 030062 86 VPDVKLTKSRD-G-SNGMAIFSFSEPSVFD 113 (183)
Q Consensus 86 iPdVrLtRSrd-G-~~GtA~F~Fe~p~a~~ 113 (183)
|.+|+|.+.++ | .+|.|...|.+++..+
T Consensus 26 i~~~~i~~d~~t~~~kg~afV~f~~~~~a~ 55 (75)
T d1hd0a_ 26 VVDCTLKLDPITGRSRGFGFVLFKESESVD 55 (75)
T ss_dssp EEEEECCCBTTTTBCCSEEEEEESSHHHHH
T ss_pred ccccccccCCCCCCcCceEEEEECCHHHHH
Confidence 56777877765 3 4699999999998654
No 27
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}
Probab=20.47 E-value=29 Score=24.09 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=12.7
Q ss_pred eEEEEecCceEEeEec
Q 030062 123 GFYMIDEEGTLQSVDV 138 (183)
Q Consensus 123 GMyLiDEEGeI~Tr~V 138 (183)
+.|+||++|.|.-..+
T Consensus 131 a~fvID~~G~I~y~~~ 146 (164)
T d1q98a_ 131 AVIVLDEQNNVLHSQL 146 (164)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEECCCCEEEEEEE
Confidence 4699999999985543
No 28
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.16 E-value=23 Score=22.80 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.1
Q ss_pred eeEEEEecCceEE
Q 030062 122 TGFYMIDEEGTLQ 134 (183)
Q Consensus 122 tGMyLiDEEGeI~ 134 (183)
..+||||.+|.|.
T Consensus 125 ~~~~LId~~G~i~ 137 (160)
T d1wp0a1 125 IIMYLIGPDGEFL 137 (160)
T ss_dssp CEEEEECTTSCEE
T ss_pred ceEEEECCCCcEE
Confidence 4679999999986
Done!