Query 030063
Match_columns 183
No_of_seqs 119 out of 146
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 1.1E-44 2.3E-49 324.3 8.4 124 55-178 43-173 (355)
2 PF01167 Tub: Tub family; Int 99.7 6.8E-18 1.5E-22 143.9 1.0 57 121-177 1-63 (246)
3 PF12937 F-box-like: F-box-lik 98.4 7.1E-08 1.5E-12 62.1 0.6 36 57-100 1-36 (47)
4 PLN03215 ascorbic acid mannose 98.4 5.1E-07 1.1E-11 82.4 5.1 70 55-134 2-74 (373)
5 PF00646 F-box: F-box domain; 98.1 3.6E-07 7.8E-12 58.1 -0.9 39 56-102 2-40 (48)
6 smart00256 FBOX A Receptor for 98.0 1.3E-06 2.8E-11 53.0 0.1 34 60-101 1-34 (41)
7 KOG2997 F-box protein FBX9 [Ge 97.2 0.00039 8.5E-09 63.9 4.2 98 54-160 101-237 (366)
8 KOG2120 SCF ubiquitin ligase, 93.0 0.025 5.3E-07 52.8 -0.3 62 56-125 97-160 (419)
9 KOG0274 Cdc4 and related F-box 57.1 2.5 5.4E-05 40.6 -1.0 42 52-101 103-144 (537)
10 KOG4341 F-box protein containi 42.6 10 0.00023 36.7 0.7 51 59-118 74-124 (483)
11 KOG0281 Beta-TrCP (transducin 37.1 14 0.0003 35.5 0.6 37 57-101 75-115 (499)
12 PF10504 DUF2452: Protein of u 36.6 34 0.00075 28.8 2.8 17 128-145 84-100 (159)
13 PF13013 F-box-like_2: F-box-l 34.3 15 0.00033 28.7 0.4 48 56-111 21-71 (109)
14 PF09372 PRANC: PRANC domain; 33.6 22 0.00048 25.9 1.1 21 54-74 69-89 (97)
15 PF14642 FAM47: FAM47 family 30.6 20 0.00044 32.2 0.5 37 57-103 138-177 (258)
16 PHA02875 ankyrin repeat protei 29.4 40 0.00086 29.4 2.1 22 53-74 383-404 (413)
17 PF05717 TnpB_IS66: IS66 Orf2 29.1 51 0.0011 25.4 2.4 55 123-181 32-94 (107)
18 PF08150 FerB: FerB (NUC096) d 27.9 77 0.0017 23.7 3.1 33 108-148 42-76 (76)
19 PRK13890 conjugal transfer pro 25.7 79 0.0017 24.4 3.0 35 57-104 84-118 (120)
20 PHA03100 ankyrin repeat protei 23.2 46 0.00099 29.5 1.4 22 53-74 444-465 (480)
21 PRK13701 psiB plasmid SOS inhi 22.3 1.2E+02 0.0026 25.4 3.6 19 126-146 60-78 (144)
22 PHA02989 ankyrin repeat protei 20.7 44 0.00095 30.5 0.8 22 53-74 455-476 (494)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=324.31 Aligned_cols=124 Identities=44% Similarity=0.717 Sum_probs=120.8
Q ss_pred CCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHHhcCCCCCCcccccccccCCCCCCCCeeEEEEe
Q 030063 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR 134 (183)
Q Consensus 55 ~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~keiv~~pe~~gk~tFP~sLkqPGPRd~~vQCfIkR 134 (183)
+.|++||||+|++||.|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++||||||+|.++||||+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeeecCcccc--CCCeEEEeccCcc-----ceEEeecCCCcee
Q 030063 135 NKKTSTFYLYLALTPYVL--SYLDFCKREGYIC-----YCSINLVDANYSC 178 (183)
Q Consensus 135 nk~~sTY~LyLgLt~~~~--d~GKFLLAarKRk-----nylISL~~~D~s~ 178 (183)
||+|++||||++|.+++. |+||||||||||| ||||||+.+|+|-
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr 173 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSR 173 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEecccccccc
Confidence 999999999999999865 8899999999998 9999999999983
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=99.68 E-value=6.8e-18 Score=143.91 Aligned_cols=57 Identities=33% Similarity=0.358 Sum_probs=47.0
Q ss_pred CCCCCCCeeEEEEecCCCceEEEeeecCcccc-CCCeEEEeccCcc-----ceEEeecCCCce
Q 030063 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPYVL-SYLDFCKREGYIC-----YCSINLVDANYS 177 (183)
Q Consensus 121 PGPRd~~vQCfIkRnk~~sTY~LyLgLt~~~~-d~GKFLLAarKRk-----nylISL~~~D~s 177 (183)
|||+|++|||||+|||++++|+||++++..+. |+||||||||||+ ||+|||+.+|+|
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dls 63 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLS 63 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHC
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccc
Confidence 89999999999999999998888888777665 8999999999987 999999999985
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.40 E-value=7.1e-08 Score=62.08 Aligned_cols=36 Identities=31% Similarity=0.646 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHH
Q 030063 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (183)
Q Consensus 57 WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~k 100 (183)
|..||+|++..|+..++. +|++.|+.|||+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 789999999999999933 379999999999999984
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.35 E-value=5.1e-07 Score=82.39 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHHhcCCCCCCcccccccccC---CCCCCCCeeEE
Q 030063 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ---PGPREFPHQCL 131 (183)
Q Consensus 55 ~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~keiv~~pe~~gk~tFP~sLkq---PGPRd~~vQCf 131 (183)
..|++||+|||..|..|| |++.|++..++||++||..+...-+.+...-. ..+.+++ +.|-.. .+|+
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 71 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGVGKKNPFRTR--PLILFNPINPSETLTD-DRSY 71 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccccccCCcccc--cccccCcccCCCCccc-cccc
Confidence 469999999999999999 99999999999999999987643211111111 1112233 455443 8888
Q ss_pred EEe
Q 030063 132 IRR 134 (183)
Q Consensus 132 IkR 134 (183)
|++
T Consensus 72 ~~~ 74 (373)
T PLN03215 72 ISR 74 (373)
T ss_pred ccc
Confidence 887
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.11 E-value=3.6e-07 Score=58.11 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHH
Q 030063 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (183)
Q Consensus 56 ~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~kei 102 (183)
.|.+||+|++.+|+.+++. +++++|+.||++|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 4789999999999999944 46999999999999998754
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.00 E-value=1.3e-06 Score=52.98 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 60 LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
||+|++..|+.+| +. +++.+|+.|||+||.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 55 7899999999999999854
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.19 E-value=0.00039 Score=63.91 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=64.2
Q ss_pred CCCCCC---CCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHHh-------cCCCCCCccccc--------
Q 030063 54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-------KSPFLSGKITFP-------- 115 (183)
Q Consensus 54 ~~~WA~---LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~keiv-------~~pe~~gk~tFP-------- 115 (183)
|+.|-+ ||+|+|-.||+++-.+- =.-++.+.||+|||.|+-.+++=. |.=+.++..-=|
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 567765 99999999999994322 123567899999999877663211 111112211111
Q ss_pred -----ccccCCCCCCCCeeEEEEec---CCCc-------------eEEEeeecCccccCCCeEEEe
Q 030063 116 -----SCLKQPGPREFPHQCLIRRN---KKTS-------------TFYLYLALTPYVLSYLDFCKR 160 (183)
Q Consensus 116 -----~sLkqPGPRd~~vQCfIkRn---k~~s-------------TY~LyLgLt~~~~d~GKFLLA 160 (183)
..|++ ||--.--|||.++ |.|. |||=|+- +.+||+||+-
T Consensus 178 ~SWR~Mfl~R--pRvrFdG~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiR----FyP~G~~l~~ 237 (366)
T KOG2997|consen 178 TSWREMFLER--PRVRFDGVYISKTTYIRQGENSLDSFYRPVHLVEYYRYIR----FYPDGHVLML 237 (366)
T ss_pred hHHHHHHhhC--cceeecceEEEEEeEeecCchhhhhhcCcceeeEEEEEEE----ecCCCcEEEE
Confidence 23677 7766778999987 2222 8999998 5679998864
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.025 Score=52.79 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHH--hcCCCCCCcccccccccCCCCCC
Q 030063 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI--VKSPFLSGKITFPSCLKQPGPRE 125 (183)
Q Consensus 56 ~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~kei--v~~pe~~gk~tFP~sLkqPGPRd 125 (183)
.|-.||.|+|.+||.-| ..++....++||++|.+++.+= -......|+.--|..|-|=--|+
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg 160 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG 160 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC
Confidence 39999999999999988 4578999999999999998652 24556677777776665533343
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=57.09 E-value=2.5 Score=40.57 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=35.5
Q ss_pred cCCCCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 52 HSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 52 ~~~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
++..-=..||.||.--||..| +. ++..+|++||+.|+.++..
T Consensus 103 ~~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred cccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhc
Confidence 366667789999999999999 55 6799999999999988754
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=42.65 E-value=10 Score=36.71 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHHhcCCCCCCcccccccc
Q 030063 59 GLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118 (183)
Q Consensus 59 ~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~keiv~~pe~~gk~tFP~sL 118 (183)
.|||||+.-||.-|+ +| ..--||.||+.|--.+-+...=. .-.-.|||.-+
T Consensus 74 ~LPpEl~lkvFS~LD----tk----sl~r~a~~c~~~n~~AlD~~~~q-~idL~t~~rDv 124 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD----TK----SLCRAAQCCTMWNKLALDGSCWQ-HIDLFTFQRDV 124 (483)
T ss_pred cCCHHHHHHHHHHHh----HH----HHHHHHHHHHHhhhhhhccccce-eeehhcchhcC
Confidence 699999999999993 33 45569999999998887766321 11235665433
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=37.08 E-value=14 Score=35.53 Aligned_cols=37 Identities=24% Similarity=0.615 Sum_probs=29.1
Q ss_pred CCCCC----HHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 57 WAGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 57 WA~LP----pELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
=..|| .++-..|+..|++ .++-+|--||+.|+++..+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~--------~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDA--------LSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHhcccccHHHHHHHHHHhcch--------hhhhHHHHHHHHHHHHhcc
Confidence 34577 7788888888854 5678899999999998754
No 12
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=36.60 E-value=34 Score=28.82 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=11.7
Q ss_pred eeEEEEecCCCceEEEee
Q 030063 128 HQCLIRRNKKTSTFYLYL 145 (183)
Q Consensus 128 vQCfIkRnk~~sTY~LyL 145 (183)
.+|-++. .-|.|||||-
T Consensus 84 A~cnF~p-ipG~iYhLY~ 100 (159)
T PF10504_consen 84 AKCNFEP-IPGQIYHLYR 100 (159)
T ss_pred cccCcee-cCCCEEEEEE
Confidence 3455554 6678999995
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=34.28 E-value=15 Score=28.66 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHhhccccCCCCCCccceeeecccc---hhHHHHHHHHhcCCCCCCc
Q 030063 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVC---KRWREITKDIVKSPFLSGK 111 (183)
Q Consensus 56 ~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VC---R~WR~i~keiv~~pe~~gk 111 (183)
+=-+||.|||..|+..-.. ....+.-..| ++||......+..|++|-.
T Consensus 21 tl~DLP~ELl~~I~~~C~~--------~~l~~l~~~~~~~r~~r~~~~~~L~~p~~c~~ 71 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCND--------PILLALSRTCRAYRSWRDHIWYLLPKPQSCTR 71 (109)
T ss_pred chhhChHHHHHHHHhhcCc--------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4567999999999998844 2223333444 3666665556666666543
No 14
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=33.55 E-value=22 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCCCCCCHHHHHHHHhhccc
Q 030063 54 SGSWAGLLPELLGEIIRRVET 74 (183)
Q Consensus 54 ~~~WA~LPpELL~~Ii~Rle~ 74 (183)
++.|..||.|+-..|+..|..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~ 89 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSN 89 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCH
Confidence 478999999999999998853
No 15
>PF14642 FAM47: FAM47 family
Probab=30.59 E-value=20 Score=32.24 Aligned_cols=37 Identities=24% Similarity=0.546 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHhhcccc---CCCCCCccceeeecccchhHHHHHHHHh
Q 030063 57 WAGLLPELLGEIIRRVETT---EDSWPHRQNVVACACVCKRWREITKDIV 103 (183)
Q Consensus 57 WA~LPpELL~~Ii~Rle~s---e~~WP~rk~vVacA~VCR~WR~i~keiv 103 (183)
-.+||||||..|+.=|+.. |+.| +-|.-++.-+++-.
T Consensus 138 eE~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept 177 (258)
T PF14642_consen 138 EEDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPT 177 (258)
T ss_pred cccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCc
Confidence 4569999999999988653 5667 45677777776554
No 16
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.41 E-value=40 Score=29.45 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.3
Q ss_pred CCCCCCCCCHHHHHHHHhhccc
Q 030063 53 SSGSWAGLLPELLGEIIRRVET 74 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~ 74 (183)
.++.|..||+|+-..|+..|..
T Consensus 383 ~~~~w~~LP~Eik~~Il~~l~~ 404 (413)
T PHA02875 383 DESKWNILPHEIKYLILEKIGN 404 (413)
T ss_pred cccchhcCcHHHHHHHHHHhcc
Confidence 4678999999999999999854
No 17
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.06 E-value=51 Score=25.36 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=35.7
Q ss_pred CCCCCeeEEEEecCCCc--------eEEEeeecCccccCCCeEEEeccCccceEEeecCCCceeeec
Q 030063 123 PREFPHQCLIRRNKKTS--------TFYLYLALTPYVLSYLDFCKREGYICYCSINLVDANYSCIFE 181 (183)
Q Consensus 123 PRd~~vQCfIkRnk~~s--------TY~LyLgLt~~~~d~GKFLLAarKRknylISL~~~D~s~~~~ 181 (183)
|.++.+-.|+.|++... =|.||.- -.|.|+|..-...-....+.|..++++.+.|
T Consensus 32 p~~g~~fvF~nr~r~riKiL~wd~~G~~L~~K----RLe~G~F~wP~~~~~~~~~~lt~~qL~~Ll~ 94 (107)
T PF05717_consen 32 PFSGDLFVFCNRRRDRIKILYWDGDGFWLYYK----RLERGRFKWPRDSEEDGAVELTWEQLSWLLE 94 (107)
T ss_pred CCcceEEEEEeccCCceEEEeccCCceEEeee----eecCCEEecCcccccCceEEECHHHHHHHHc
Confidence 67777888888865533 5666642 2488899864333335688888877776654
No 18
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=27.87 E-value=77 Score=23.70 Aligned_cols=33 Identities=36% Similarity=0.664 Sum_probs=22.2
Q ss_pred CCCcccccccccCCCCC--CCCeeEEEEecCCCceEEEeeecC
Q 030063 108 LSGKITFPSCLKQPGPR--EFPHQCLIRRNKKTSTFYLYLALT 148 (183)
Q Consensus 108 ~~gk~tFP~sLkqPGPR--d~~vQCfIkRnk~~sTY~LyLgLt 148 (183)
.|||+. .+.||.||-+ +..|+|.+. -||+|||+
T Consensus 42 ~CGk~q-t~flk~P~~~~~~~~i~akl~-------v~lWlGl~ 76 (76)
T PF08150_consen 42 FCGKIQ-TLFLKYPGKKGKGWKIPAKLR-------VYLWLGLA 76 (76)
T ss_pred ccCeeE-EEEEECccccCCCCcEeEEEE-------EEEEcccC
Confidence 566653 5779999854 347777664 57888864
No 19
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=25.70 E-value=79 Score=24.43 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHHHhc
Q 030063 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVK 104 (183)
Q Consensus 57 WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~keiv~ 104 (183)
...+||.+.+ ++.+| |.. .|-|.|.|-+-++.+++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~-----PA~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEH-----QAFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCc-----cHHHHHHHHHHHHHHHc
Confidence 4578998665 88888 443 46899999999888775
No 20
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.18 E-value=46 Score=29.46 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHHhhccc
Q 030063 53 SSGSWAGLLPELLGEIIRRVET 74 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~ 74 (183)
.++.|..||+|+...|+..|..
T Consensus 444 ~~~~w~~lP~Eik~~Il~~l~~ 465 (480)
T PHA03100 444 KNTYWNILPIEIKYKILEYLSN 465 (480)
T ss_pred cCCchhhCcHHHHHHHHHhCCH
Confidence 3568999999999999999854
No 21
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=22.30 E-value=1.2e+02 Score=25.37 Aligned_cols=19 Identities=32% Similarity=0.411 Sum_probs=15.9
Q ss_pred CCeeEEEEecCCCceEEEeee
Q 030063 126 FPHQCLIRRNKKTSTFYLYLA 146 (183)
Q Consensus 126 ~~vQCfIkRnk~~sTY~LyLg 146 (183)
.||||+|.= .--.|+|+++
T Consensus 60 fPVq~Rfsp--~~~~~~l~vC 78 (144)
T PRK13701 60 FPVQVRFTP--AHERFHLALC 78 (144)
T ss_pred eeEEEEecC--CCCCeEEEEe
Confidence 589999987 5568999997
No 22
>PHA02989 ankyrin repeat protein; Provisional
Probab=20.70 E-value=44 Score=30.47 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHHhhccc
Q 030063 53 SSGSWAGLLPELLGEIIRRVET 74 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~ 74 (183)
.++.|..||+|+...|+..|..
T Consensus 455 ~~~~w~~LP~Eik~~Il~~L~~ 476 (494)
T PHA02989 455 KKNYWMYLPIEIQINILEYLTF 476 (494)
T ss_pred cccHHHhCCHHHHHHHHHcCCH
Confidence 4578999999999999999944
Done!