Query 030063
Match_columns 183
No_of_seqs 119 out of 146
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5n_A Tubby-related protein 1 99.7 1.3E-17 4.3E-22 141.7 6.4 56 117-177 4-70 (246)
2 2fim_A Tubby related protein 1 99.7 1.9E-17 6.7E-22 142.8 6.9 57 116-177 27-94 (276)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.6 7.5E-09 2.6E-13 66.7 1.6 40 53-100 5-44 (53)
4 2ast_B S-phase kinase-associat 97.9 2.8E-06 9.5E-11 68.0 1.5 40 53-100 5-44 (336)
5 2p1m_B Transport inhibitor res 97.8 4.7E-06 1.6E-10 71.4 0.8 42 53-101 2-43 (594)
6 2e31_A FBS1, F-box only protei 97.7 1.1E-05 3.9E-10 70.0 1.8 40 54-101 48-88 (297)
7 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00014 4.9E-09 59.5 1.3 41 53-101 15-55 (445)
8 3v7d_B Cell division control p 97.1 5.8E-05 2E-09 61.6 -1.1 41 53-101 11-51 (464)
9 1p22_A F-BOX/WD-repeat protein 96.6 0.00037 1.3E-08 57.2 0.4 41 53-101 7-51 (435)
10 3ogk_B Coronatine-insensitive 96.5 0.00047 1.6E-08 59.2 0.5 37 57-100 13-49 (592)
11 3l2o_B F-box only protein 4; s 96.4 0.00032 1.1E-08 62.0 -1.1 38 56-101 4-41 (312)
12 3qkg_A Protein AMBP; beta barr 37.0 1.3E+02 0.0044 22.9 7.2 86 84-180 26-115 (193)
13 3nct_A Protein PSIB; DNA bindi 25.3 92 0.0031 24.9 4.6 29 126-157 60-88 (144)
14 4ety_A LAIR-1, mlair1, leukocy 23.0 1.1E+02 0.0039 22.0 4.4 37 108-145 3-46 (118)
No 1
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=99.70 E-value=1.3e-17 Score=141.69 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=47.3
Q ss_pred cccCCCCCCCCeeEEEEecCCCc------eEEEeeecCccccCCCeEEEeccCcc-----ceEEeecCCCce
Q 030063 117 CLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPYVLSYLDFCKREGYIC-----YCSINLVDANYS 177 (183)
Q Consensus 117 sLkqPGPRd~~vQCfIkRnk~~s------TY~LyLgLt~~~~d~GKFLLAarKRk-----nylISL~~~D~s 177 (183)
.|+||||+|++|||||+|||++. |||||++ .++++||||||||+ ||+||++.+|+|
T Consensus 4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dls 70 (246)
T 3c5n_A 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLS 70 (246)
T ss_dssp GGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC--
T ss_pred HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccc
Confidence 49999999999999999999985 8999986 46778999999987 999999999996
No 2
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=99.69 E-value=1.9e-17 Score=142.82 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred ccccCCCCCCCCeeEEEEecCCCc------eEEEeeecCccccCCCeEEEeccCcc-----ceEEeecCCCce
Q 030063 116 SCLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPYVLSYLDFCKREGYIC-----YCSINLVDANYS 177 (183)
Q Consensus 116 ~sLkqPGPRd~~vQCfIkRnk~~s------TY~LyLgLt~~~~d~GKFLLAarKRk-----nylISL~~~D~s 177 (183)
..|+||||+|.+|||||+|||+++ ||||||+ .|+|+||||||||| ||+||++.+|+|
T Consensus 27 ~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dls 94 (276)
T 2fim_A 27 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLS 94 (276)
T ss_dssp TGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC--
T ss_pred HHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcc
Confidence 349999999999999999999984 9999996 57899999999988 999999999996
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.63 E-value=7.5e-09 Score=66.70 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=33.1
Q ss_pred CCCCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHH
Q 030063 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~k 100 (183)
++..|++||+|+|..||.+| | .++++.|+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 4 3689999999999999884
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.90 E-value=2.8e-06 Score=67.95 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHH
Q 030063 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~k 100 (183)
++..|.+||+|+|..||.+| +.+ +++.|+.|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 45789999999999999999 444 78999999999999983
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.77 E-value=4.7e-06 Score=71.37 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
+.+.|+.||+|+|..||.+| |..+++++|+.|||+|+++...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 8778999999999999999433
No 6
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.68 E-value=1.1e-05 Score=69.97 Aligned_cols=40 Identities=33% Similarity=0.628 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHhhccccCCCCCCcccee-eecccchhHHHHHHH
Q 030063 54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD 101 (183)
Q Consensus 54 ~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vV-acA~VCR~WR~i~ke 101 (183)
......||+|||.+||.+| |.+ +++ .|++|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence 3467899999999999999 774 788 999999999999753
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.07 E-value=0.00014 Score=59.53 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.3
Q ss_pred CCCCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
..+-.+.||+|++..||..| + -++++.|+.|||+|+.++.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHTC
T ss_pred cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcCc
Confidence 45678999999999999999 3 36799999999999998753
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.06 E-value=5.8e-05 Score=61.61 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.9
Q ss_pred CCCCCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 53 ~~~~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
+.+-.+.||+|++..||..| |. ++++.|+.|||.|+.++.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 55668899999999999999 44 5899999999999998865
No 9
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.62 E-value=0.00037 Score=57.24 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=33.9
Q ss_pred CCCCCCCCCHH----HHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 53 SSGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 53 ~~~~WA~LPpE----LL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
+.+--+.||+| |+..||..|+. +++..|+.|||+|+.++.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 34456779999 99999999943 6789999999999988854
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.54 E-value=0.00047 Score=59.16 Aligned_cols=37 Identities=14% Similarity=0.474 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHH
Q 030063 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (183)
Q Consensus 57 WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~k 100 (183)
.++||+|+|..|+.+| +..+++++|+.|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4589999999999999 556889999999999999954
No 11
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.00032 Score=62.04 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHhhccccCCCCCCccceeeecccchhHHHHHHH
Q 030063 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (183)
Q Consensus 56 ~WA~LPpELL~~Ii~Rle~se~~WP~rk~vVacA~VCR~WR~i~ke 101 (183)
-|.+||.|++..||..|++ +|+..||.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 3778999999999999944 5799999999999999965
No 12
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=36.99 E-value=1.3e+02 Score=22.92 Aligned_cols=86 Identities=12% Similarity=-0.010 Sum_probs=47.2
Q ss_pred ceeeecccchhHHHHHHHHhcCCCCCCcccccccccCCCCCCCCeeEEEEecCCCceEEEeeecCccccCCCeEEEeccC
Q 030063 84 NVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPYVLSYLDFCKREGY 163 (183)
Q Consensus 84 ~vVacA~VCR~WR~i~keiv~~pe~~gk~tFP~sLkqPGPRd~~vQCfIkRnk~~sTY~LyLgLt~~~~d~GKFLLAarK 163 (183)
-++|-|.=|. |..-- +.+. ...+..|. |+-.++.+.......+.+..-..-.-+.. ..+.|||.+-...
T Consensus 26 Y~ia~As~~~-~~~~~----~~~~----~~~~~~l~-~~~~~g~l~v~~~~~~~g~C~~~~~~~~k-t~~pGkf~~~~~~ 94 (193)
T 3qkg_A 26 YNLAIGSTSP-WLKKI----MDRM----TVSTLVLG-EGATEAEISMTSTRWRKGVCEETSGAYEK-TDTDGKFLYHKSK 94 (193)
T ss_dssp EEEEEEESCH-HHHHH----SSSC----BCEEEEEE-ECSSTTEEEEEEEEECSSSEEEEEEEEEE-CSSTTEEEEEETT
T ss_pred EEEEEecCCh-hHhhc----cCCc----eEEEEEEc-cCCCCCcEEEEEEEEcCCeeEEEEEEEEe-cCCCcEEEEeccc
Confidence 4677777774 32211 1221 12334444 44456666665544444553222221122 2478999997654
Q ss_pred cc----ceEEeecCCCceeee
Q 030063 164 IC----YCSINLVDANYSCIF 180 (183)
Q Consensus 164 Rk----nylISL~~~D~s~~~ 180 (183)
.. ++++..|.+||..++
T Consensus 95 ~~~~~~~~Vl~TDY~~yaivy 115 (193)
T 3qkg_A 95 WNITMESYVVHTNYDEYAIFL 115 (193)
T ss_dssp TTEEEEEEEEEECSSSEEEEE
T ss_pred ccccceEEEEecCCccEEEEE
Confidence 43 689999999987765
No 13
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=25.33 E-value=92 Score=24.92 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=20.2
Q ss_pred CCeeEEEEecCCCceEEEeeecCccccCCCeE
Q 030063 126 FPHQCLIRRNKKTSTFYLYLALTPYVLSYLDF 157 (183)
Q Consensus 126 ~~vQCfIkRnk~~sTY~LyLgLt~~~~d~GKF 157 (183)
.||||+|.=. .-.|+|+++ +|.-.--+|+
T Consensus 60 fPVq~RfsP~--~~~f~l~vC-SpG~~sP~W~ 88 (144)
T 3nct_A 60 FPVQVRFTPA--HERFHLALC-SPGDVSQVWV 88 (144)
T ss_dssp SSSEEEEEET--TCSEEEEEE-CSSSSCSSEE
T ss_pred eeEEEEEcCC--CCceEEEEe-CCCCCCcceE
Confidence 5899999984 489999998 3333334553
No 14
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}
Probab=22.95 E-value=1.1e+02 Score=21.98 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=23.4
Q ss_pred CCCcccccccccCCCC-----CCCCeeEEEEecC--CCceEEEee
Q 030063 108 LSGKITFPSCLKQPGP-----REFPHQCLIRRNK--KTSTFYLYL 145 (183)
Q Consensus 108 ~~gk~tFP~sLkqPGP-----Rd~~vQCfIkRnk--~~sTY~LyL 145 (183)
+.|.+.=|...-+||| ...+++| -.... ...+|.||-
T Consensus 3 ~~g~lpkPsL~a~P~~vV~~G~~VTL~C-~~~~~~~~~~~f~L~k 46 (118)
T 4ety_A 3 QEGSLPDITIFPNSSLMISQGTFVTVVC-SYSDKHDLYNMVRLEK 46 (118)
T ss_dssp ---CCCEEEEECCSEEEEETTCCEEEEE-ECTTTGGGCCEEEEEE
T ss_pred ccCCCCCCEEEEeCCCcccCCCcEEEEE-CCCCCCcccCEEEEEE
Confidence 3466777888888886 3369999 53322 016899994
Done!