Query 030065
Match_columns 183
No_of_seqs 180 out of 3303
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.2E-22 1.1E-26 176.2 15.6 157 19-177 27-206 (968)
2 PLN03150 hypothetical protein; 99.8 7.9E-19 1.7E-23 149.2 13.0 155 17-176 368-532 (623)
3 PLN00113 leucine-rich repeat r 99.6 3.3E-16 7.1E-21 139.4 7.8 116 63-178 475-590 (968)
4 PLN03150 hypothetical protein; 99.5 3.1E-14 6.7E-19 121.3 7.5 92 88-179 419-510 (623)
5 KOG0617 Ras suppressor protein 99.4 8.2E-15 1.8E-19 103.8 -3.0 107 63-172 56-163 (264)
6 KOG0617 Ras suppressor protein 99.4 5.5E-15 1.2E-19 104.7 -3.9 114 61-178 31-145 (264)
7 KOG0472 Leucine-rich repeat pr 99.2 1.7E-12 3.8E-17 102.5 0.7 112 63-178 435-546 (565)
8 KOG4194 Membrane glycoprotein 99.2 1.8E-12 4E-17 106.5 -2.1 118 63-181 269-413 (873)
9 PF14580 LRR_9: Leucine-rich r 99.2 4.2E-11 9E-16 86.3 4.9 103 64-172 20-126 (175)
10 KOG0472 Leucine-rich repeat pr 99.1 1.5E-12 3.3E-17 102.9 -3.9 109 63-176 183-292 (565)
11 KOG0444 Cytoskeletal regulator 99.1 6.9E-12 1.5E-16 104.3 -1.1 115 63-181 32-147 (1255)
12 KOG4194 Membrane glycoprotein 99.1 1.3E-10 2.9E-15 95.8 5.1 115 63-180 102-217 (873)
13 KOG0444 Cytoskeletal regulator 99.1 3.7E-12 7.9E-17 105.9 -4.2 112 63-178 222-334 (1255)
14 PF13855 LRR_8: Leucine rich r 99.0 2.2E-10 4.7E-15 68.5 3.5 60 112-171 2-61 (61)
15 PRK15370 E3 ubiquitin-protein 99.0 9.1E-09 2E-13 89.3 14.4 155 8-172 50-296 (754)
16 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.7E-15 81.2 4.6 101 63-167 42-148 (175)
17 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.3E-15 67.4 3.7 61 87-147 1-61 (61)
18 PRK15387 E3 ubiquitin-protein 99.0 7.6E-10 1.7E-14 95.8 5.0 62 112-178 403-464 (788)
19 KOG0618 Serine/threonine phosp 98.9 2.3E-10 5E-15 98.3 0.2 104 62-170 382-487 (1081)
20 KOG0618 Serine/threonine phosp 98.9 5.9E-11 1.3E-15 101.9 -3.5 108 63-174 359-467 (1081)
21 KOG4237 Extracellular matrix p 98.9 1.3E-10 2.8E-15 91.7 -1.5 118 63-181 67-185 (498)
22 PRK15370 E3 ubiquitin-protein 98.9 5.5E-09 1.2E-13 90.7 8.1 103 64-179 221-323 (754)
23 KOG1259 Nischarin, modulator o 98.9 4.3E-10 9.2E-15 86.4 0.9 106 63-173 284-413 (490)
24 PF08263 LRRNT_2: Leucine rich 98.8 4.9E-09 1.1E-13 58.0 4.0 40 20-59 2-43 (43)
25 PLN03210 Resistant to P. syrin 98.8 2.7E-08 5.9E-13 90.6 9.4 110 63-175 611-720 (1153)
26 PLN03210 Resistant to P. syrin 98.7 4.7E-08 1E-12 89.1 9.5 112 64-179 590-701 (1153)
27 KOG0532 Leucine-rich repeat (L 98.7 4.4E-10 9.6E-15 92.4 -3.1 108 65-178 145-252 (722)
28 cd00116 LRR_RI Leucine-rich re 98.7 4E-09 8.6E-14 82.7 2.1 86 87-172 137-234 (319)
29 cd00116 LRR_RI Leucine-rich re 98.7 4E-09 8.6E-14 82.7 1.6 112 62-173 80-207 (319)
30 KOG0532 Leucine-rich repeat (L 98.7 2.3E-09 4.9E-14 88.3 -0.3 111 61-178 119-229 (722)
31 KOG1259 Nischarin, modulator o 98.7 3.6E-09 7.7E-14 81.4 -0.2 86 63-153 307-416 (490)
32 KOG4237 Extracellular matrix p 98.6 2.9E-09 6.3E-14 84.3 -1.3 111 66-181 49-161 (498)
33 PRK15387 E3 ubiquitin-protein 98.6 1.5E-07 3.2E-12 81.9 8.6 54 63-124 222-275 (788)
34 KOG4579 Leucine-rich repeat (L 98.6 2.9E-09 6.2E-14 73.1 -2.2 112 61-176 51-163 (177)
35 COG4886 Leucine-rich repeat (L 98.6 2.7E-08 5.8E-13 80.7 2.3 104 63-170 116-220 (394)
36 KOG4579 Leucine-rich repeat (L 98.5 7.2E-09 1.6E-13 71.1 -2.7 112 64-180 28-143 (177)
37 PF12799 LRR_4: Leucine Rich r 98.5 1.9E-07 4.2E-12 51.8 3.3 36 112-148 2-37 (44)
38 PF12799 LRR_4: Leucine Rich r 98.4 3.7E-07 8E-12 50.6 3.6 36 136-172 2-37 (44)
39 COG4886 Leucine-rich repeat (L 98.4 2.2E-07 4.9E-12 75.3 3.4 111 63-178 163-296 (394)
40 KOG1859 Leucine-rich repeat pr 98.4 1E-08 2.3E-13 86.7 -5.3 103 64-172 165-267 (1096)
41 KOG4658 Apoptotic ATPase [Sign 98.3 3.5E-07 7.6E-12 80.8 2.5 106 63-170 545-653 (889)
42 KOG1644 U2-associated snRNP A' 98.2 2.8E-06 6.1E-11 62.0 5.5 102 63-168 42-149 (233)
43 KOG0531 Protein phosphatase 1, 98.1 9.5E-07 2.1E-11 72.3 0.8 104 63-172 95-199 (414)
44 KOG0531 Protein phosphatase 1, 98.0 1.9E-06 4E-11 70.6 1.2 106 63-174 72-177 (414)
45 KOG1859 Leucine-rich repeat pr 98.0 1.1E-07 2.3E-12 80.8 -6.8 104 63-172 187-292 (1096)
46 KOG4658 Apoptotic ATPase [Sign 97.9 8.7E-06 1.9E-10 72.2 4.0 110 63-175 523-634 (889)
47 KOG3207 Beta-tubulin folding c 97.9 2.9E-06 6.2E-11 68.3 0.2 61 111-172 246-314 (505)
48 KOG3207 Beta-tubulin folding c 97.8 5.8E-06 1.3E-10 66.6 0.1 86 86-172 196-284 (505)
49 KOG1644 U2-associated snRNP A' 97.7 5.6E-05 1.2E-09 55.3 4.9 84 87-173 42-127 (233)
50 KOG2739 Leucine-rich acidic nu 97.6 2.3E-05 4.9E-10 59.2 1.6 101 62-167 42-151 (260)
51 KOG1909 Ran GTPase-activating 97.4 2.1E-05 4.6E-10 61.7 -1.1 109 63-171 185-310 (382)
52 KOG2123 Uncharacterized conser 97.4 5.2E-06 1.1E-10 63.6 -4.4 99 62-165 18-123 (388)
53 KOG3665 ZYG-1-like serine/thre 97.4 8E-05 1.7E-09 64.6 2.0 109 62-174 147-265 (699)
54 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.7E-09 55.3 2.3 91 79-173 35-130 (260)
55 KOG1909 Ran GTPase-activating 97.2 0.00025 5.3E-09 55.9 2.8 110 63-172 92-226 (382)
56 PRK15386 type III secretion pr 97.1 0.0014 3E-08 53.5 6.5 31 136-169 157-187 (426)
57 KOG3665 ZYG-1-like serine/thre 97.0 0.00017 3.8E-09 62.6 0.5 107 63-171 122-232 (699)
58 PF13306 LRR_5: Leucine rich r 96.7 0.013 2.7E-07 39.6 7.7 112 63-182 12-124 (129)
59 PRK15386 type III secretion pr 96.7 0.006 1.3E-07 49.8 6.7 51 64-121 53-104 (426)
60 KOG2982 Uncharacterized conser 96.5 0.00087 1.9E-08 52.2 0.8 86 86-171 70-158 (418)
61 PF00560 LRR_1: Leucine Rich R 96.5 0.0012 2.6E-08 30.6 0.8 17 161-178 2-18 (22)
62 PF00560 LRR_1: Leucine Rich R 96.4 0.0014 2.9E-08 30.5 0.9 18 137-155 2-19 (22)
63 COG5238 RNA1 Ran GTPase-activa 96.2 0.012 2.5E-07 45.6 5.2 106 63-172 92-227 (388)
64 smart00370 LRR Leucine-rich re 96.2 0.0038 8.3E-08 30.1 1.8 23 158-181 1-23 (26)
65 smart00369 LRR_TYP Leucine-ric 96.2 0.0038 8.3E-08 30.1 1.8 23 158-181 1-23 (26)
66 KOG0473 Leucine-rich repeat pr 95.9 0.00013 2.8E-09 54.8 -6.2 85 61-148 40-124 (326)
67 PF13504 LRR_7: Leucine rich r 95.6 0.0098 2.1E-07 25.7 1.5 11 137-147 3-13 (17)
68 KOG2120 SCF ubiquitin ligase, 95.5 0.00045 9.7E-09 53.7 -4.9 57 64-120 186-243 (419)
69 PF13306 LRR_5: Leucine rich r 95.5 0.046 9.9E-07 36.8 5.5 95 82-182 7-102 (129)
70 KOG0473 Leucine-rich repeat pr 95.1 0.00036 7.8E-09 52.5 -6.4 87 83-172 38-124 (326)
71 KOG2982 Uncharacterized conser 94.8 0.0063 1.4E-07 47.5 -0.4 69 53-122 86-157 (418)
72 KOG2123 Uncharacterized conser 94.8 0.0015 3.2E-08 50.5 -3.9 87 86-177 18-106 (388)
73 smart00370 LRR Leucine-rich re 94.1 0.045 9.8E-07 26.1 1.8 19 135-154 2-20 (26)
74 smart00369 LRR_TYP Leucine-ric 94.1 0.045 9.8E-07 26.1 1.8 19 135-154 2-20 (26)
75 COG5238 RNA1 Ran GTPase-activa 93.6 0.055 1.2E-06 42.0 2.4 109 63-172 30-170 (388)
76 KOG2120 SCF ubiquitin ligase, 91.3 0.0061 1.3E-07 47.6 -5.3 87 88-174 186-275 (419)
77 PF13516 LRR_6: Leucine Rich r 88.3 0.25 5.5E-06 22.9 0.9 15 159-173 2-16 (24)
78 smart00364 LRR_BAC Leucine-ric 87.3 0.42 9E-06 23.0 1.3 17 160-177 3-19 (26)
79 KOG3864 Uncharacterized conser 85.8 0.11 2.4E-06 38.3 -1.7 81 64-144 102-185 (221)
80 KOG3864 Uncharacterized conser 84.4 0.15 3.2E-06 37.7 -1.6 81 88-168 102-185 (221)
81 smart00365 LRR_SD22 Leucine-ri 83.8 1 2.2E-05 21.7 1.7 14 159-172 2-15 (26)
82 smart00368 LRR_RI Leucine rich 80.7 1.4 3E-05 21.4 1.6 14 159-172 2-15 (28)
83 PF15240 Pro-rich: Proline-ric 80.7 0.99 2.2E-05 32.6 1.5 23 1-23 1-23 (179)
84 KOG1947 Leucine rich repeat pr 70.4 1 2.2E-05 37.1 -0.8 60 110-169 242-305 (482)
85 KOG3763 mRNA export factor TAP 68.6 3.1 6.7E-05 35.4 1.6 83 85-172 216-312 (585)
86 KOG3763 mRNA export factor TAP 47.9 10 0.00022 32.5 1.3 63 109-174 216-285 (585)
87 KOG4308 LRR-containing protein 43.6 0.86 1.9E-05 38.3 -5.6 87 86-172 203-303 (478)
88 smart00367 LRR_CC Leucine-rich 41.3 20 0.00044 16.6 1.3 13 158-170 1-13 (26)
89 TIGR00864 PCC polycystin catio 38.9 19 0.00041 36.8 1.8 34 93-126 1-34 (2740)
90 TIGR00864 PCC polycystin catio 30.5 40 0.00087 34.7 2.4 32 69-100 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=5.2e-22 Score=176.23 Aligned_cols=157 Identities=31% Similarity=0.582 Sum_probs=115.8
Q ss_pred ChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCceeeeecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc
Q 030065 19 LTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN 98 (183)
Q Consensus 19 ~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 98 (183)
...|..+|++||..+. ++.....+|....++|.|.|+.|.. ..+++.|+++++++++.++..+..+++|+.|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 4588999999999985 5666778998888999999999974 4689999999999988888888888999999999999
Q ss_pred CCCCChhhhc-CCCCCcEEEecccccccc----------------------cCccccCCCCCcEEEcccCcccCCccccc
Q 030065 99 FHGHLPNELG-QLRRLRFIRFGFNKLSGS----------------------IPTWIGVLSKLQTLRLYNNSFTGPIPNSL 155 (183)
Q Consensus 99 l~~~~p~~~~-~l~~L~~L~l~~n~l~~~----------------------~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 155 (183)
+++.+|..+. .+++|++|++++|.+++. +|..++.+++|++|++++|.+.+.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8888887654 666666666666666544 44445555555555555555555555555
Q ss_pred cCCCCCcEEeccCCcccccCCc
Q 030065 156 LNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 156 ~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
.++++|++|++++|.+++.+|.
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCCh
Confidence 5566666666666666555554
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.80 E-value=7.9e-19 Score=149.17 Aligned_cols=155 Identities=28% Similarity=0.483 Sum_probs=131.7
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCC-----CceeeeecCC----CCcEEEEEccCCCCcccCCccCCCCC
Q 030065 17 SNLTTDQSALLAFKARVVDYRSDLTNNWSISYPIC-----SWVGISCGSR----HQRVTALNLSDMGLGGTIPLHLGNLS 87 (183)
Q Consensus 17 ~~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~----~~~l~~L~l~~~~l~~~~~~~l~~l~ 87 (183)
....+|..+|..+|..+. .+. ..+|... +| .|.|+.|... ...++.|+++++++.|.+|..+..++
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~g~--~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL--RFGWNGD--PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc--cCCCCCC--CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 345678999999999885 222 2368642 34 7999999531 13589999999999999999999999
Q ss_pred CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCC-CCCcEEec
Q 030065 88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNL-SKLEVFDA 166 (183)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l 166 (183)
+|+.|++++|.++|.+|..+..+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988653 46778999
Q ss_pred cCCcccccCC
Q 030065 167 IYNVIDGTTT 176 (183)
Q Consensus 167 ~~N~l~g~ip 176 (183)
.+|.....+|
T Consensus 523 ~~N~~lc~~p 532 (623)
T PLN03150 523 TDNAGLCGIP 532 (623)
T ss_pred cCCccccCCC
Confidence 9986544444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=3.3e-16 Score=139.42 Aligned_cols=116 Identities=31% Similarity=0.534 Sum_probs=107.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.+++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+|
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 56888999999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
++|+++|.+|..+.++++|++|++++|+++|.+|..
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999999999999999999999999864
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=3.1e-14 Score=121.28 Aligned_cols=92 Identities=32% Similarity=0.579 Sum_probs=88.4
Q ss_pred CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEecc
Q 030065 88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAI 167 (183)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 167 (183)
.++.|+|++|.++|.+|..+..+++|+.|++++|.++|.+|..+..+++|+.|+|++|+++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCccc
Q 030065 168 YNVIDGTTTKMT 179 (183)
Q Consensus 168 ~N~l~g~ip~~~ 179 (183)
+|+++|.+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 999999999764
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=8.2e-15 Score=103.81 Aligned_cols=107 Identities=25% Similarity=0.418 Sum_probs=62.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccc-ccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ 141 (183)
.+++.|++.+|+++ .+|..+..++.|+.|+++.|++. ..|..|+.++.|+.|++.+|++.. .+|..|..+..|+.|+
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 45566666666666 56666666666666666666666 566666666666666666665542 2344444444444444
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
|+.|.+. .+|..++++++|++|.+..|.+-
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 4444444 45555666666666666666554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=5.5e-15 Score=104.70 Aligned_cols=114 Identities=24% Similarity=0.428 Sum_probs=103.6
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
+..+++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|..++.++.|+.|+++.|++. .+|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3478899999999999 89999999999999999999999 89999999999999999999998 899999999999999
Q ss_pred EcccCccc-CCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 141 RLYNNSFT-GPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 141 ~L~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
||.+|++. ..+|..|..+..|+.|.++.|.+. .+|..
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d 145 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD 145 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh
Confidence 99999986 468888999999999999999998 55543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.23 E-value=1.7e-12 Score=102.51 Aligned_cols=112 Identities=29% Similarity=0.382 Sum_probs=88.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
++++.|++++|-+. .+|.+++.+..|+.++++.|++. ..|..+..+..++.+-.++|++...-|+.+.+|.+|.+|||
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 56777777777776 77777777777777777777777 67777666666676666667777444455889999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
.+|.+. .+|+.++++.+|++|++.+|+|. ..|..
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC-CCHHH
Confidence 999999 89999999999999999999999 43443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.17 E-value=1.8e-12 Score=106.55 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=68.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccC---------
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV--------- 133 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~--------- 133 (183)
..+++|+++.|+++..-...+.++++|+.|+++.|.|...-++.|...+.|++|+|++|+++..-+..|..
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 45666777777766444555666677777777777776555666666666677777766666333334444
Q ss_pred ---------------CCCCcEEEcccCcccCCccc---cccCCCCCcEEeccCCcccccCCccccc
Q 030065 134 ---------------LSKLQTLRLYNNSFTGPIPN---SLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 134 ---------------l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
+++|+.|||.+|.+++.+-. .+..+++|+.|++.+|++. .||...|.
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfs 413 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFS 413 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhc
Confidence 44555555555555433221 2344666666666666665 55555553
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=4.2e-11 Score=86.31 Aligned_cols=103 Identities=33% Similarity=0.423 Sum_probs=31.9
Q ss_pred cEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccc-cCCCCCcEEE
Q 030065 64 RVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLR 141 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ 141 (183)
+++.|++++|.++ .+. .+. .+.+|+.|++++|.|+ .++ .+..++.|++|++++|+++ .+...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 4566777777766 332 344 4566777777777776 333 4566777777777777776 444333 3467777777
Q ss_pred cccCcccCCcc--ccccCCCCCcEEeccCCccc
Q 030065 142 LYNNSFTGPIP--NSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 142 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~ 172 (183)
+++|++. .+- ..+..+++|+.|++.+|.++
T Consensus 95 L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence 7777775 221 23456677777777777765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=1.5e-12 Score=102.86 Aligned_cols=109 Identities=28% Similarity=0.350 Sum_probs=82.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcccc-CCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-VLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ 141 (183)
.+++++++..|-++ .+|+.++.+.+|..|+++.|.+. .+| +|..+..|..++++.|++. .+|.+.. +++++.+||
T Consensus 183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence 35667777777666 77877888888888888888887 666 6777777777777777776 6665544 778888888
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
|.+|++. ++|.++.-+.+|.+||+++|.+++..+
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence 8888888 788888888888888888888885433
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.11 E-value=6.9e-12 Score=104.26 Aligned_cols=115 Identities=34% Similarity=0.413 Sum_probs=57.0
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc-cCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS-IPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ 141 (183)
.+++.|.+...++. .+|.++..+.+|++|.+++|++. .+..+++.++.|+.+.+..|++... +|..+..+..|.+||
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 34555555555555 55555555555555555555554 3444444444444444444444321 344444445555555
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
|+.|++. ..|..+..-+++..|+|++|+|. +||...|+
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfi 147 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFI 147 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHH
Confidence 5555554 44544444445555555555554 44544443
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-10 Score=95.81 Aligned_cols=115 Identities=25% Similarity=0.276 Sum_probs=58.1
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC-ccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ 141 (183)
++++.+.+..|.++ .+|.-.....+++.|+|.+|.|+..-.+.+..++.|+.|||+.|.++ .+| ..|..-.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLN 179 (873)
T ss_pred Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEe
Confidence 34444444444444 44443333334555555555555333344555555555555555555 333 2333334556666
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
|++|.|+..--..|..+.+|..|.|+.|.++ .+|..+|
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~F 217 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSF 217 (873)
T ss_pred eccccccccccccccccchheeeecccCccc-ccCHHHh
Confidence 6666655322334555556666666666666 5555555
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.08 E-value=3.7e-12 Score=105.85 Aligned_cols=112 Identities=28% Similarity=0.365 Sum_probs=77.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.++..++++.|++. .+|.++.++.+|+.|++++|.|+ ++.-....+.+|++|+++.|+++ .+|+.+..++.|+.|.+
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence 56777777777777 77777777777777777777777 55555666667777777777777 67777777777777777
Q ss_pred ccCcccC-CccccccCCCCCcEEeccCCcccccCCcc
Q 030065 143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
.+|+++- .+|..++.+.+|+.+..++|++. .+|+.
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 7776542 45666666666666666666665 44543
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=2.2e-10 Score=68.45 Aligned_cols=60 Identities=32% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcc
Q 030065 112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171 (183)
Q Consensus 112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l 171 (183)
+|++|++++|+++..-+..|..+++|++|++++|.++..-|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555522224555555666666665555533333455566666666666553
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=9.1e-09 Score=89.29 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=90.1
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHhcccCCCC--CCCCCCCCCCCCCcee----------------eeecCC--------
Q 030065 8 IASLAMTTLSNLTTDQSALLAFKARVVDYRSD--LTNNWSISYPICSWVG----------------ISCGSR-------- 61 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~k~~~~~~~~~--~~~~w~~~~~~c~w~g----------------v~c~~~-------- 61 (183)
++-.+........++...++.+...+..+++. ...+|...+++|.-.. |.|...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~ 129 (754)
T PRK15370 50 IAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVT 129 (754)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCcccccccc
Confidence 33445556677788889999888877644332 2345877777775443 334310
Q ss_pred -----------------------------------------------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEe
Q 030065 62 -----------------------------------------------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDV 94 (183)
Q Consensus 62 -----------------------------------------------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 94 (183)
..+.+.|++++++++ .+|..+. ++++.|++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~L 206 (754)
T PRK15370 130 ESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLIL 206 (754)
T ss_pred cccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEe
Confidence 023567777777777 5665543 36677777
Q ss_pred cCccCCCCChhhhcCCCCCcEEEecccccccccCccccC-------------------CCCCcEEEcccCcccCCccccc
Q 030065 95 AHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGV-------------------LSKLQTLRLYNNSFTGPIPNSL 155 (183)
Q Consensus 95 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-------------------l~~L~~L~L~~n~l~~~~p~~~ 155 (183)
++|.++ .+|..+. ++|++|++++|+++ .+|..+.. ..+|+.|++++|+++ .+|..+
T Consensus 207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l 281 (754)
T PRK15370 207 DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS-CLPENL 281 (754)
T ss_pred cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-cccccc
Confidence 777776 5555443 35666666666655 44433221 124555666666555 455433
Q ss_pred cCCCCCcEEeccCCccc
Q 030065 156 LNLSKLEVFDAIYNVID 172 (183)
Q Consensus 156 ~~l~~L~~L~l~~N~l~ 172 (183)
. ++|+.|++++|+++
T Consensus 282 ~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 282 P--EELRYLSVYDNSIR 296 (754)
T ss_pred C--CCCcEEECCCCccc
Confidence 2 35666666666666
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4e-10 Score=81.23 Aligned_cols=101 Identities=26% Similarity=0.338 Sum_probs=51.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhh-cCCCCCcEEEeccccccccc-CccccCCCCCcEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNEL-GQLRRLRFIRFGFNKLSGSI-PTWIGVLSKLQTL 140 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L 140 (183)
.+++.|++++|+++ .++ .+..++.|+.|++++|.|+ .+.+.+ ..+++|+.|++++|++...- -..+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 57999999999999 555 4788999999999999999 565545 46899999999999997321 1456789999999
Q ss_pred EcccCcccCCcccc----ccCCCCCcEEecc
Q 030065 141 RLYNNSFTGPIPNS----LLNLSKLEVFDAI 167 (183)
Q Consensus 141 ~L~~n~l~~~~p~~----~~~l~~L~~L~l~ 167 (183)
++.+|.++ ..+.. +..+|+|+.||-.
T Consensus 119 ~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 119 SLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred eccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence 99999998 44442 5689999999853
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3.8e-10 Score=67.36 Aligned_cols=61 Identities=28% Similarity=0.385 Sum_probs=43.5
Q ss_pred CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcc
Q 030065 87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF 147 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 147 (183)
++|++|++++|.++...+..|..+++|++|++++|.++..-|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777744345667777778888877777755556777788888888877764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.95 E-value=7.6e-10 Score=95.80 Aligned_cols=62 Identities=29% Similarity=0.391 Sum_probs=45.0
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
+|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|+++|.+|..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 4555555555555 34432 235677788888887 78888889999999999999999887764
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.91 E-value=2.3e-10 Score=98.33 Aligned_cols=104 Identities=29% Similarity=0.424 Sum_probs=76.3
Q ss_pred CCcEEEEEccCCCCcccCCc-cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 62 HQRVTALNLSDMGLGGTIPL-HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++.|++++|.+. .+|. .+.++..|+.|++++|.++ .+|.++..++.|++|...+|++. .+| .+..++.|+.+
T Consensus 382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence 367888888888877 5554 3567778888888888888 77888888888888888888887 677 67778888888
Q ss_pred EcccCcccC-CccccccCCCCCcEEeccCCc
Q 030065 141 RLYNNSFTG-PIPNSLLNLSKLEVFDAIYNV 170 (183)
Q Consensus 141 ~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~ 170 (183)
|++.|+++- .+|... -.++|++||+++|.
T Consensus 458 DlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred ecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 888888763 222222 22678888888885
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.90 E-value=5.9e-11 Score=101.88 Aligned_cols=108 Identities=27% Similarity=0.389 Sum_probs=98.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChh-hhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
..++.|.+.+|.++...-+.+.++.+|+.|++++|++. .+|. .+.++..|+.|++++|+++ .+|..+..++.|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 56888999999999888888999999999999999999 5665 6788999999999999999 8999999999999999
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
..+|.+. .+| ++..+++|+.+|++.|+++-.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 9999999 888 889999999999999999743
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=1.3e-10 Score=91.74 Aligned_cols=118 Identities=25% Similarity=0.229 Sum_probs=96.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecc-cccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ 141 (183)
...+.+++..|+|+...+..|..+++|+.|||+.|.|+..-|..|..+.++..|-+.+ |+|+..-...|+++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5678899999999955556688899999999999999988899999999888887766 889844446788899999999
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
+.-|++.-...+.+..+++|..|.+..|.+. .|+...|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~ 185 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQ 185 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhcccccc
Confidence 9888888555566788899999999999887 67766654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.89 E-value=5.5e-09 Score=90.65 Aligned_cols=103 Identities=22% Similarity=0.370 Sum_probs=71.7
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
+++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 3455555555554 3444332 25666666666666 5565543 47899999999998 6777654 589999999
Q ss_pred cCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
+|+++ .+|..+. ++|+.|++++|.++ .+|...
T Consensus 292 ~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 292 DNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred CCccc-cCcccch--hhHHHHHhcCCccc-cCCccc
Confidence 99999 6776543 57899999999998 466543
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4.3e-10 Score=86.44 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=61.0
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcc------------
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW------------ 130 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~------------ 130 (183)
..++.+++++|.++ .+..+..-.+.++.|+++.|.+. .+. .+..+++|+.|++++|.++ .+..+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34556666666665 55555555556666666666665 222 2555666666666666554 33322
Q ss_pred ----------ccCCCCCcEEEcccCcccCCcc--ccccCCCCCcEEeccCCcccc
Q 030065 131 ----------IGVLSKLQTLRLYNNSFTGPIP--NSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 131 ----------~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~g 173 (183)
+..+-+|..||+.+|+++ .+- +.++++|.|+++.+.+|.+++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccc
Confidence 344555666666666665 221 246677777777777777764
No 24
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.84 E-value=4.9e-09 Score=58.01 Aligned_cols=40 Identities=38% Similarity=0.760 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCC--CCCCCceeeeec
Q 030065 20 TTDQSALLAFKARVVDYRSDLTNNWSIS--YPICSWVGISCG 59 (183)
Q Consensus 20 ~~~~~~l~~~k~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 59 (183)
.+|.++|++||..+..++...+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999999986677789999987 799999999994
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.79 E-value=2.7e-08 Score=90.55 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=61.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.+++.|++.++.+. .++..+..+++|++++++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 34555666666555 455555556666666666554333444 3555666666666665443456666666666666666
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 175 (183)
++|..-+.+|..+ ++++|+.|++++|...+.+
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCcccc
Confidence 6653333555543 4555555555555433333
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.75 E-value=4.7e-08 Score=89.08 Aligned_cols=112 Identities=23% Similarity=0.238 Sum_probs=91.3
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.++.|++.++.+. .+|..+ .+.+|+.|++++|.+. .++..+..+++|+.++++++.....+|. +..+++|+.|+|+
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 4777777777776 677665 4678999999999988 6788888899999999998764447775 7788999999999
Q ss_pred cCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
+|.....+|..+.++++|+.|++++|..-+.+|..+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 987556899999999999999999986656777653
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=4.4e-10 Score=92.35 Aligned_cols=108 Identities=27% Similarity=0.409 Sum_probs=71.0
Q ss_pred EEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065 65 VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 144 (183)
Q Consensus 65 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 144 (183)
++.|-+++|.++ .+|+.+..+.+|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..+ .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 444555555555 55555555555666666666665 55666666666666666666666 566666533 467788888
Q ss_pred CcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
|++. .+|-.|.+++.|++|-|.+|.+. ..|+.
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence 8888 78888888888888888888887 44543
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=4e-09 Score=82.71 Aligned_cols=86 Identities=24% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccc----cCccccCCCCCcEEEcccCcccCC----cccc
Q 030065 87 SFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP----IPNS 154 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~ 154 (183)
++|+.+++++|.+++. ++..+..++.|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4455555555555422 122233344555555555555421 122233344555555555555421 1222
Q ss_pred ccCCCCCcEEeccCCccc
Q 030065 155 LLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 155 ~~~l~~L~~L~l~~N~l~ 172 (183)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 334455555555555554
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=4e-09 Score=82.73 Aligned_cols=112 Identities=27% Similarity=0.292 Sum_probs=85.0
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCC---CcEEEecCccCCC----CChhhhcCC-CCCcEEEecccccccc----cCc
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSF---LVSLDVAHNNFHG----HLPNELGQL-RRLRFIRFGFNKLSGS----IPT 129 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~p~ 129 (183)
.++++.|+++++.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.+++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 468999999999987555555554544 9999999999873 223345566 8999999999999843 334
Q ss_pred cccCCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcccc
Q 030065 130 WIGVLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 130 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
.+..++.|++|++++|.+++. ++..+...++|+.|++++|.+++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 566778999999999999842 33445566799999999998863
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=2.3e-09 Score=88.27 Aligned_cols=111 Identities=30% Similarity=0.418 Sum_probs=98.6
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
....++.++++.|+++ .+|..++.++ |+.|-+++|+++ .+|..++.++.|..|+.+.|.+. .+|..++.+.+|+.|
T Consensus 119 ~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l 194 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence 3467889999999999 8898888876 899999999999 88999999999999999999998 889999999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
.+..|++. .+|+++..+ .|..||++.|+++ .||-.
T Consensus 195 ~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 195 NVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred HHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 99999999 889988854 5889999999999 78864
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=3.6e-09 Score=81.45 Aligned_cols=86 Identities=27% Similarity=0.315 Sum_probs=67.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCCh----------------------hhhcCCCCCcEEEecc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP----------------------NELGQLRRLRFIRFGF 120 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p----------------------~~~~~l~~L~~L~l~~ 120 (183)
+.++.|++++|++. .+.. +..+++|+.||+++|.++ .+. ..+.++-+|..|++.+
T Consensus 307 Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 307 PKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred cceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence 78999999999998 5554 788899999999999886 221 2334566788899999
Q ss_pred cccccccC--ccccCCCCCcEEEcccCcccCCccc
Q 030065 121 NKLSGSIP--TWIGVLSKLQTLRLYNNSFTGPIPN 153 (183)
Q Consensus 121 n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~ 153 (183)
|++. .+. ..+++++.|+++.|-+|.+. .+|.
T Consensus 384 N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 384 NQIE-ELDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred cchh-hHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 9887 332 56889999999999999998 4454
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.64 E-value=2.9e-09 Score=84.28 Aligned_cols=111 Identities=24% Similarity=0.304 Sum_probs=92.7
Q ss_pred EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc-
Q 030065 66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN- 144 (183)
Q Consensus 66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~- 144 (183)
..++.++.+++ .+|..+.. ..+.++|..|+|+...|..|+.+..|+.|+|++|+|+..-|+.|.++++|..|.+.+
T Consensus 49 ~~VdCr~~GL~-eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcc-cCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 56788888888 88877654 678999999999955556789999999999999999988899999999988887776
Q ss_pred CcccCCccc-cccCCCCCcEEeccCCcccccCCccccc
Q 030065 145 NSFTGPIPN-SLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 145 n~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
|+|+ .+|. .|+++.+|+.|.+.-|++. -++...|.
T Consensus 126 NkI~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~ 161 (498)
T KOG4237|consen 126 NKIT-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALR 161 (498)
T ss_pred Cchh-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHH
Confidence 8899 6665 5788999999999999887 56655554
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.63 E-value=1.5e-07 Score=81.91 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=35.2
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 124 (183)
.+++.|.+.+|.++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++++|.++
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 35788888888887 56642 467888888888888 55542 234555555555444
No 34
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.60 E-value=2.9e-09 Score=73.06 Aligned_cols=112 Identities=25% Similarity=0.343 Sum_probs=83.3
Q ss_pred CCCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 139 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 139 (183)
...+++.+++++|++. .+|+.|. +++.++.+++.+|.++ .+|.++..++.|+.++++.|.+. ..|..+..+.+|..
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3467888999999988 7777765 4568889999999998 88888888999999999999888 77877777888888
Q ss_pred EEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 140 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
|+...|.+. .+|-.+......-..++.++.+.+.-|
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 888888877 666554333333334445556655433
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=2.7e-08 Score=80.68 Aligned_cols=104 Identities=33% Similarity=0.505 Sum_probs=76.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCC-CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLS-FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
..++.+++.++.++ .+++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45777888888877 6676666664 7888888888887 66666777888888888888887 6666555677788888
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNV 170 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 170 (183)
+++|+++ .+|..+.....|..+.+++|.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 8888887 677665555667777777774
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.48 E-value=7.2e-09 Score=71.13 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=90.4
Q ss_pred cEEEEEccCCCCcccCCc---cCCCCCCCcEEEecCccCCCCChhhhcC-CCCCcEEEecccccccccCccccCCCCCcE
Q 030065 64 RVTALNLSDMGLGGTIPL---HLGNLSFLVSLDVAHNNFHGHLPNELGQ-LRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 139 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 139 (183)
.+-.++++++.+- .+++ .+.+..+|+.+++++|.+. .+|+.|.. ++..+.+++++|+++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4456777777665 3333 3555668888999999999 66776654 568999999999999 78999999999999
Q ss_pred EEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 140 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
|++..|.+. ..|+.+..+.++..|+..+|.+. +||-..|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 999999999 78888888999999999998877 6664443
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=1.9e-07 Score=51.76 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=16.2
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEcccCccc
Q 030065 112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT 148 (183)
Q Consensus 112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 148 (183)
+|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 34444444444444444444444
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=3.7e-07 Score=50.62 Aligned_cols=36 Identities=39% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 136 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 44444445555555555555444
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=2.2e-07 Score=75.28 Aligned_cols=111 Identities=34% Similarity=0.460 Sum_probs=67.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc-----------------------CCCCCcEEEec
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG-----------------------QLRRLRFIRFG 119 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----------------------~l~~L~~L~l~ 119 (183)
+.++.|++++|.++ .+|......+.|+.+++++|+++ .+|..+. .+..+..+.+.
T Consensus 163 ~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 163 PNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred ccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccC
Confidence 45666666666666 55554445556666666666665 4554433 34444444444
Q ss_pred ccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 120 FNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 120 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
+|++. .++..++.+++++.|++++|.++ .++. ++.+.+++.|++++|.+...+|..
T Consensus 241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 241 NNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred Cceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 44444 23455666777888888888877 5554 777788888888888777555543
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1e-08 Score=86.73 Aligned_cols=103 Identities=30% Similarity=0.424 Sum_probs=77.8
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.+...+++.|.+. .+..++.-+++++.|+|++|+++ .+- .+..++.|++||+++|.++ .+|.---.-..|+.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 5667778888887 77777777888889999999887 433 7778888999999999888 666532222348888888
Q ss_pred cCcccCCccccccCCCCCcEEeccCCccc
Q 030065 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+|.++ .+ ..+.++.+|..||+++|-++
T Consensus 241 nN~l~-tL-~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 241 NNALT-TL-RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ccHHH-hh-hhHHhhhhhhccchhHhhhh
Confidence 88887 33 45778888888888888765
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.29 E-value=3.5e-07 Score=80.81 Aligned_cols=106 Identities=28% Similarity=0.389 Sum_probs=82.5
Q ss_pred CcEEEEEccCCC--CcccCCcc-CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065 63 QRVTALNLSDMG--LGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 139 (183)
Q Consensus 63 ~~l~~L~l~~~~--l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 139 (183)
+.+++|-+.+|. +. .++.. |..++.|+.||+++|.--+.+|..++.+-+|++|++++..++ .+|..+++++.|.+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 467888888875 44 34433 566888999999987776788988988999999999998888 88888888899999
Q ss_pred EEcccCcccCCccccccCCCCCcEEeccCCc
Q 030065 140 LRLYNNSFTGPIPNSLLNLSKLEVFDAIYNV 170 (183)
Q Consensus 140 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 170 (183)
|++..+.....+|.....+.+|++|.+..-.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9988886554556656668888888876543
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.8e-06 Score=62.00 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=79.0
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQTL 140 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L 140 (183)
.....+++++|.+. .++ .|..++.|.+|.+++|+|+..-|.--..+++|+.|.+.+|.+. .+. +.+..++.|+.|
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 35678899999887 444 3778889999999999999554544445788999999999987 332 346788999999
Q ss_pred EcccCcccCCcccc----ccCCCCCcEEeccC
Q 030065 141 RLYNNSFTGPIPNS----LLNLSKLEVFDAIY 168 (183)
Q Consensus 141 ~L~~n~l~~~~p~~----~~~l~~L~~L~l~~ 168 (183)
.+-+|.++ ..+.. +..+|+|+.||++.
T Consensus 119 tll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 99999998 44442 56899999999765
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=9.5e-07 Score=72.29 Aligned_cols=104 Identities=30% Similarity=0.291 Sum_probs=45.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
..++.+++.+|.++ .+...+..+.+|++|++++|.|+... .+..++.|+.|++++|.++ .+ ..+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhcccC
Confidence 34445555555544 22222344445555555555554221 2333444555555555554 22 12333445555555
Q ss_pred ccCcccCCcccc-ccCCCCCcEEeccCCccc
Q 030065 143 YNNSFTGPIPNS-LLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 143 ~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 172 (183)
++|.++ .+... ...+.+++.+.+.+|.+.
T Consensus 170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 555544 22221 234444444555555443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=1.9e-06 Score=70.60 Aligned_cols=106 Identities=29% Similarity=0.417 Sum_probs=84.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
..+..+.+..|.+. ..-..+..+.+++.+++.+|.|. .+...+..+++|++|++++|.++ .+. .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhhee
Confidence 45666778888877 44444778899999999999999 55544778999999999999998 443 3567788999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
.+|.++ .+. .+..+++|+.+++++|.++..
T Consensus 148 ~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 148 SGNLIS-DIS-GLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred ccCcch-hcc-CCccchhhhcccCCcchhhhh
Confidence 999998 443 466689999999999998843
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=1.1e-07 Score=80.82 Aligned_cols=104 Identities=26% Similarity=0.276 Sum_probs=82.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhh-hcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
+.++.|++++|.++ .+. .+..+++|++||++.|.+. .+|.- ...+ .|+.|.+.+|.++ .+ ..+.++++|+.||
T Consensus 187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence 68999999999998 444 6788999999999999999 77752 1223 4999999999998 43 3467899999999
Q ss_pred cccCcccCCc-cccccCCCCCcEEeccCCccc
Q 030065 142 LYNNSFTGPI-PNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 142 L~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+++|-+.+.- -..++.+..|+.|.|.+|.+-
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999988521 123566778999999999874
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.93 E-value=8.7e-06 Score=72.19 Aligned_cols=110 Identities=21% Similarity=0.189 Sum_probs=85.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc--CCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN--FHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..++.+.+-++.+. .++... ..+.|+.|-+..|. +....+..|..++.|.+||+++|.=-+.+|..++.+-+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34566666666665 344332 23368888899886 442334457789999999999987666999999999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 175 (183)
+++...+. .+|..++++..|.+|++..+.-...+
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence 99999999 99999999999999999987654344
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.9e-06 Score=68.31 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCCcEEEecccccccccC--ccccCCCCCcEEEcccCcccC-Ccccc-----ccCCCCCcEEeccCCccc
Q 030065 111 RRLRFIRFGFNKLSGSIP--TWIGVLSKLQTLRLYNNSFTG-PIPNS-----LLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 111 ~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~-~~p~~-----~~~l~~L~~L~l~~N~l~ 172 (183)
..|+.|+|++|++. ..+ ...+.++.|..|+++.+.++. .+|+. ...+++|++|++..|+++
T Consensus 246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 34455555555443 222 233445555555555555442 11221 234556666666666653
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.8e-06 Score=66.60 Aligned_cols=86 Identities=21% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCCCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc--ccccCCCCCc
Q 030065 86 LSFLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP--NSLLNLSKLE 162 (183)
Q Consensus 86 l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~ 162 (183)
+++|+.|.++.+.++.. +-.....+|+|+.|++..|..-+.-.....-++.|+.|||++|++- .++ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 34555555555555421 1123334677777777777422122233345678889999998877 455 3467888888
Q ss_pred EEeccCCccc
Q 030065 163 VFDAIYNVID 172 (183)
Q Consensus 163 ~L~l~~N~l~ 172 (183)
.|+++.+.++
T Consensus 275 ~Lnls~tgi~ 284 (505)
T KOG3207|consen 275 QLNLSSTGIA 284 (505)
T ss_pred hhhccccCcc
Confidence 8888888775
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=5.6e-05 Score=55.33 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=67.0
Q ss_pred CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc--cccCCCCCcEE
Q 030065 87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEVF 164 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L 164 (183)
.....+|+++|.+. . -..+..++.|.+|.+.+|+++..-|..-.-+++|+.|.|.+|++. .+.. .+..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 36788999999987 3 346788999999999999999555554445688999999999998 3322 35788999999
Q ss_pred eccCCcccc
Q 030065 165 DAIYNVIDG 173 (183)
Q Consensus 165 ~l~~N~l~g 173 (183)
.+-+|.++.
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 999998863
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.64 E-value=2.3e-05 Score=59.25 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=71.7
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCc--cCCCCChhhhcCCCCCcEEEecccccccccCcc---ccCCCC
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN--NFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW---IGVLSK 136 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~ 136 (183)
...++.+.+.+.+++. + ..+..+++|++|.++.| .+.+.++.-...+++|+++++++|+++. +.. +..+.+
T Consensus 42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 4567777777777662 2 23677889999999999 6666666656667999999999999972 333 455677
Q ss_pred CcEEEcccCcccCCccc----cccCCCCCcEEecc
Q 030065 137 LQTLRLYNNSFTGPIPN----SLLNLSKLEVFDAI 167 (183)
Q Consensus 137 L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~ 167 (183)
|..|++.+|..++ +-. .+..+++|++||-.
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 8899998887764 211 24567788777643
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.41 E-value=2.1e-05 Score=61.71 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=67.3
Q ss_pred CcEEEEEccCCCCcc----cCCccCCCCCCCcEEEecCccCCCCC----hhhhcCCCCCcEEEecccccccccCcc----
Q 030065 63 QRVTALNLSDMGLGG----TIPLHLGNLSFLVSLDVAHNNFHGHL----PNELGQLRRLRFIRFGFNKLSGSIPTW---- 130 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~~---- 130 (183)
+.++.+.+..|++.. .+...+..+++|+.||+++|.++-.. -..++.+++|+.++++++.+.......
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 456666666666541 12233566777888888888776322 234556777888888877776332221
Q ss_pred c-cCCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcc
Q 030065 131 I-GVLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVI 171 (183)
Q Consensus 131 ~-~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l 171 (183)
+ ...++|++|.|.+|.++.. +-..+...+.|..|++++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 2357788888888877631 112244567788888888877
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=5.2e-06 Score=63.59 Aligned_cols=99 Identities=25% Similarity=0.330 Sum_probs=75.5
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQT 139 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~ 139 (183)
...+++|++-|+++.. +.- ..+++.|+.|.|+-|.|+.. ..+..++.|+.|+|..|.|. .+. ..+.++++|++
T Consensus 18 l~~vkKLNcwg~~L~D-Isi-c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-ISI-CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH-HHH-HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 4568888999998873 322 35688999999999999843 34678899999999999987 443 34678999999
Q ss_pred EEcccCcccCCcccc-----ccCCCCCcEEe
Q 030065 140 LRLYNNSFTGPIPNS-----LLNLSKLEVFD 165 (183)
Q Consensus 140 L~L~~n~l~~~~p~~-----~~~l~~L~~L~ 165 (183)
|.|..|.-.|.-+.. +..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999888765543 34577777765
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=8e-05 Score=64.64 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCcEEEEEccCCCCcc-cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCc
Q 030065 62 HQRVTALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQ 138 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~ 138 (183)
.|.+++|.+.+..+.. .+..-...+++|..||+++..++. + .+++.+++|+.|.+.+=.+. ... ..+..+++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCC
Confidence 4788888888877642 222334567888999999998883 3 67888888888887766665 222 2456789999
Q ss_pred EEEcccCcccCCccc-------cccCCCCCcEEeccCCccccc
Q 030065 139 TLRLYNNSFTGPIPN-------SLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 139 ~L~L~~n~l~~~~p~-------~~~~l~~L~~L~l~~N~l~g~ 174 (183)
+||+|..... ..+. .-..+|+|+.||.|++.+.+.
T Consensus 224 vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 224 VLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9999887655 2221 123588999999998877643
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00012 Score=55.34 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=64.8
Q ss_pred CCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccc--ccccccCccccCCCCCcEEEcccCcccCCcccc--
Q 030065 79 IPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN--KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS-- 154 (183)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-- 154 (183)
+......+..|+.+.+.+..++ . -..+..+++|+.|.++.| ++.+.++.....+++|++|++++|++. . +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc
Confidence 4443444556666666666665 2 234667899999999999 666666655566799999999999987 2 333
Q ss_pred -ccCCCCCcEEeccCCcccc
Q 030065 155 -LLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 155 -~~~l~~L~~L~l~~N~l~g 173 (183)
+..+.+|..|++.+|..++
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 4567788899999887653
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.22 E-value=0.00025 Score=55.91 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=53.1
Q ss_pred CcEEEEEccCCCCcccCCcc----CCCCCCCcEEEecCccCCCC-------------ChhhhcCCCCCcEEEeccccccc
Q 030065 63 QRVTALNLSDMGLGGTIPLH----LGNLSFLVSLDVAHNNFHGH-------------LPNELGQLRRLRFIRFGFNKLSG 125 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~-------------~p~~~~~l~~L~~L~l~~n~l~~ 125 (183)
+++++|+++.|.+...-++. +.....|++|.+.+|.+... .....+.-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 46777777777765333332 23455667777777666411 01112234556666666666541
Q ss_pred c----cCccccCCCCCcEEEcccCcccC--C--ccccccCCCCCcEEeccCCccc
Q 030065 126 S----IPTWIGVLSKLQTLRLYNNSFTG--P--IPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 126 ~----~p~~~~~l~~L~~L~L~~n~l~~--~--~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
. +...|...+.|+.+.+.+|.+.- . +-..+.++++|+.||+..|.|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 1 11223334455555555554431 0 0112344555555555555443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.15 E-value=0.0014 Score=53.45 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=17.9
Q ss_pred CCcEEEcccCcccCCccccccCCCCCcEEeccCC
Q 030065 136 KLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169 (183)
Q Consensus 136 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 169 (183)
+|++|++++|... .+|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 5666777666554 3443332 46777777655
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.00017 Score=62.60 Aligned_cols=107 Identities=26% Similarity=0.307 Sum_probs=78.0
Q ss_pred CcEEEEEccCCCCc-ccCCccCC-CCCCCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcE
Q 030065 63 QRVTALNLSDMGLG-GTIPLHLG-NLSFLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 139 (183)
Q Consensus 63 ~~l~~L~l~~~~l~-~~~~~~l~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 139 (183)
.++++|+++|...- ...|..++ .+|+|+.|.+.+-.+... ...-...+++|..||+++.+++ .+ ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 57889999886532 22333333 478999999998777522 2234457899999999999998 44 66889999999
Q ss_pred EEcccCcccC-CccccccCCCCCcEEeccCCcc
Q 030065 140 LRLYNNSFTG-PIPNSLLNLSKLEVFDAIYNVI 171 (183)
Q Consensus 140 L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l 171 (183)
|.+.+=.+.. ..-..+.++++|++||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 9988766662 1123578999999999998654
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.74 E-value=0.013 Score=39.58 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=60.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.+++.+.+.. .+...-...|...+.|+.+.+..+ +...-...+..++.++.+.+.. .+...-...|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4688888875 566444455777778999999886 6633444677787899999976 443233456777899999999
Q ss_pred ccCcccCCccc-cccCCCCCcEEeccCCcccccCCcccccC
Q 030065 143 YNNSFTGPIPN-SLLNLSKLEVFDAIYNVIDGTTTKMTFID 182 (183)
Q Consensus 143 ~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 182 (183)
..+ +. .++. .+.+. +|+.+.+.. .+. .|+...|.+
T Consensus 89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~ 124 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKN 124 (129)
T ss_dssp TTT--B-EEHTTTTTT--T--EEE-TT-B-S-S----GGG-
T ss_pred Ccc-cc-EEchhhhcCC-CceEEEECC-Ccc-EECCccccc
Confidence 776 44 3433 35555 888888876 444 577777765
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.70 E-value=0.006 Score=49.83 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=24.8
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecC-ccCCCCChhhhcCCCCCcEEEeccc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFN 121 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n 121 (183)
+++.|+++++.++ .+| .+. .+|+.|.+++ +.++ .+|..+ .++|+.|++++|
T Consensus 53 ~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence 4556666666555 444 121 2456666554 2332 444333 235556665555
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00087 Score=52.15 Aligned_cols=86 Identities=23% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCC-ccccccCCCCCc
Q 030065 86 LSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP-IPNSLLNLSKLE 162 (183)
Q Consensus 86 l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~ 162 (183)
.+.++.+|+.+|.|+. .+-.-+.++|.|++|+++.|.+...+...-....+|++|.|.+..+... .-..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4567788888888872 1222345688888888888887633322113456788888877766532 223345677777
Q ss_pred EEeccCCcc
Q 030065 163 VFDAIYNVI 171 (183)
Q Consensus 163 ~L~l~~N~l 171 (183)
.|.++.|++
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 777777754
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0012 Score=30.64 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=9.8
Q ss_pred CcEEeccCCcccccCCcc
Q 030065 161 LEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 161 L~~L~l~~N~l~g~ip~~ 178 (183)
|++|++++|+++ .||+.
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455666666665 55554
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.44 E-value=0.0014 Score=30.45 Aligned_cols=18 Identities=44% Similarity=0.672 Sum_probs=8.8
Q ss_pred CcEEEcccCcccCCccccc
Q 030065 137 LQTLRLYNNSFTGPIPNSL 155 (183)
Q Consensus 137 L~~L~L~~n~l~~~~p~~~ 155 (183)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.21 E-value=0.012 Score=45.56 Aligned_cols=106 Identities=22% Similarity=0.326 Sum_probs=58.5
Q ss_pred CcEEEEEccCCCCcccCCcc----CCCCCCCcEEEecCccCCCCChh-------------hhcCCCCCcEEEeccccccc
Q 030065 63 QRVTALNLSDMGLGGTIPLH----LGNLSFLVSLDVAHNNFHGHLPN-------------ELGQLRRLRFIRFGFNKLSG 125 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~-------------~~~~l~~L~~L~l~~n~l~~ 125 (183)
++++.++++.|.+....|+. +..-+.|++|.+++|.+-..--. ....-|.|++.....|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 56677777777766555544 33445667777777765311111 1123456666666666664
Q ss_pred ccCcc-----ccCCCCCcEEEcccCcccCCcccc--------ccCCCCCcEEeccCCccc
Q 030065 126 SIPTW-----IGVLSKLQTLRLYNNSFTGPIPNS--------LLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 126 ~~p~~-----~~~l~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~l~~N~l~ 172 (183)
..+.. +..-..|+++.+.+|.|. |.. +..+.+|..||+..|-++
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 22311 222245666666666665 332 234567777777777665
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.20 E-value=0.0038 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=16.4
Q ss_pred CCCCcEEeccCCcccccCCccccc
Q 030065 158 LSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 158 l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
+++|+.|++++|.++ .||..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 66777764
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.20 E-value=0.0038 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=16.4
Q ss_pred CCCCcEEeccCCcccccCCccccc
Q 030065 158 LSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 158 l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
+++|+.|++++|.++ .||..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 66777764
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.93 E-value=0.00013 Score=54.77 Aligned_cols=85 Identities=25% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
...+++.||++.|.+. .+...+..++.++.++++.|++. ..|..+.+...+..+++..|.++ ..|-+++..+.++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3478899999999887 66777777888999999999998 88988888888888888888888 788889999999999
Q ss_pred EcccCccc
Q 030065 141 RLYNNSFT 148 (183)
Q Consensus 141 ~L~~n~l~ 148 (183)
++..|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99888876
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.55 E-value=0.0098 Score=25.67 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=3.2
Q ss_pred CcEEEcccCcc
Q 030065 137 LQTLRLYNNSF 147 (183)
Q Consensus 137 L~~L~L~~n~l 147 (183)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.00045 Score=53.73 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=29.5
Q ss_pred cEEEEEccCCCCcc-cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecc
Q 030065 64 RVTALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGF 120 (183)
Q Consensus 64 ~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (183)
+++++|+++..++. .+..-+..+.+|+.|.+.++++...+-.++.+-.+|+.+++++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 46666666665542 1222233445566666666666555544554444555555443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.51 E-value=0.046 Score=36.77 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=56.5
Q ss_pred cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc-cccCCCC
Q 030065 82 HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN-SLLNLSK 160 (183)
Q Consensus 82 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~ 160 (183)
.|.+.++|+.+.+.. .+...-...|..++.|+.+.+..+ +...-...|..+++++.+.+.. .+. .++. .+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 356677899999885 466344456788889999999876 6533345677888999999976 443 2333 4566899
Q ss_pred CcEEeccCCcccccCCcccccC
Q 030065 161 LEVFDAIYNVIDGTTTKMTFID 182 (183)
Q Consensus 161 L~~L~l~~N~l~g~ip~~~~~~ 182 (183)
|+.+++..+ +. .++...|.+
T Consensus 83 l~~i~~~~~-~~-~i~~~~f~~ 102 (129)
T PF13306_consen 83 LKNIDIPSN-IT-EIGSSSFSN 102 (129)
T ss_dssp ECEEEETTT--B-EEHTTTTTT
T ss_pred ccccccCcc-cc-EEchhhhcC
Confidence 999999775 44 566666653
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.09 E-value=0.00036 Score=52.46 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCc
Q 030065 83 LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLE 162 (183)
Q Consensus 83 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 162 (183)
+..+...+.||++.|++- ..-..++.++.+..|+++.|++. .+|..++....++.+++..|.++ ..|..++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 455667889999999886 45556777889999999999998 78888888889999999999998 8899999999999
Q ss_pred EEeccCCccc
Q 030065 163 VFDAIYNVID 172 (183)
Q Consensus 163 ~L~l~~N~l~ 172 (183)
++++-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999988764
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.0063 Score=47.53 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=31.4
Q ss_pred ceeeeecC-CCCcEEEEEccCCCCcccCCccC-CCCCCCcEEEecCccCCCCCh-hhhcCCCCCcEEEecccc
Q 030065 53 WVGISCGS-RHQRVTALNLSDMGLGGTIPLHL-GNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNK 122 (183)
Q Consensus 53 w~gv~c~~-~~~~l~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~ 122 (183)
|.-+.|.- ..++++.|+++.|++...+. .+ ..+.+|+.|-+.+..+..... ..+..+|.++.+.++.|.
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 44444432 34555666666655552222 12 234455555555555442222 223344555555555553
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0015 Score=50.47 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=67.8
Q ss_pred CCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc--cccCCCCCcE
Q 030065 86 LSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEV 163 (183)
Q Consensus 86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~ 163 (183)
+.+.++|+.-++.++ .+ .-...++.|++|.|+-|+++ .+ ..+..+++|+.|+|..|.|. .+-+ .+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 446677788888877 33 23457999999999999998 44 34778999999999999998 4433 4679999999
Q ss_pred EeccCCcccccCCc
Q 030065 164 FDAIYNVIDGTTTK 177 (183)
Q Consensus 164 L~l~~N~l~g~ip~ 177 (183)
|-|..|.=.|.-+.
T Consensus 93 LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQ 106 (388)
T ss_pred HhhccCCcccccch
Confidence 99999987766543
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.07 E-value=0.045 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=11.3
Q ss_pred CCCcEEEcccCcccCCcccc
Q 030065 135 SKLQTLRLYNNSFTGPIPNS 154 (183)
Q Consensus 135 ~~L~~L~L~~n~l~~~~p~~ 154 (183)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 55543
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.07 E-value=0.045 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=11.3
Q ss_pred CCCcEEEcccCcccCCcccc
Q 030065 135 SKLQTLRLYNNSFTGPIPNS 154 (183)
Q Consensus 135 ~~L~~L~L~~n~l~~~~p~~ 154 (183)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 55543
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.65 E-value=0.055 Score=41.96 Aligned_cols=109 Identities=23% Similarity=0.276 Sum_probs=73.5
Q ss_pred CcEEEEEccCCCCccc----CCccCCCCCCCcEEEecCccCC---CCCh-------hhhcCCCCCcEEEecccccccccC
Q 030065 63 QRVTALNLSDMGLGGT----IPLHLGNLSFLVSLDVAHNNFH---GHLP-------NELGQLRRLRFIRFGFNKLSGSIP 128 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~---~~~p-------~~~~~l~~L~~L~l~~n~l~~~~p 128 (183)
..++.+++++|.+... +...+.+-.+|+..++++-... ..++ +.+-+++.|+..+++.|-+.-..|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5678899999987632 3334555667777777654221 1222 244568999999999998876666
Q ss_pred cc----ccCCCCCcEEEcccCcccCCccc-----cc---------cCCCCCcEEeccCCccc
Q 030065 129 TW----IGVLSKLQTLRLYNNSFTGPIPN-----SL---------LNLSKLEVFDAIYNVID 172 (183)
Q Consensus 129 ~~----~~~l~~L~~L~L~~n~l~~~~p~-----~~---------~~l~~L~~L~l~~N~l~ 172 (183)
.. +.+-..|.+|.|++|.+. .+.. .+ ..-|.|+.+....|++.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 43 456678999999999876 3322 11 24577888888888875
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=0.0061 Score=47.63 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=63.9
Q ss_pred CCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC-cccCC-ccccccCCCCCcEE
Q 030065 88 FLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN-SFTGP-IPNSLLNLSKLEVF 164 (183)
Q Consensus 88 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L 164 (183)
.++++|+++..|+.. .-.-+..+..|+.|.+.++++.+.+-..+..-.+|+.|+++.+ .++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 589999999888732 2234567889999999999999888778888889999999865 45521 11124678888888
Q ss_pred eccCCccccc
Q 030065 165 DAIYNVIDGT 174 (183)
Q Consensus 165 ~l~~N~l~g~ 174 (183)
+++-+.+...
T Consensus 266 NlsWc~l~~~ 275 (419)
T KOG2120|consen 266 NLSWCFLFTE 275 (419)
T ss_pred CchHhhccch
Confidence 8888876533
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.30 E-value=0.25 Score=22.94 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=8.7
Q ss_pred CCCcEEeccCCcccc
Q 030065 159 SKLEVFDAIYNVIDG 173 (183)
Q Consensus 159 ~~L~~L~l~~N~l~g 173 (183)
++|+.|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 566777777777654
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.34 E-value=0.42 Score=23.04 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=10.3
Q ss_pred CCcEEeccCCcccccCCc
Q 030065 160 KLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 160 ~L~~L~l~~N~l~g~ip~ 177 (183)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 5554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.78 E-value=0.11 Score=38.32 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=42.3
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC-Chhhhc-CCCCCcEEEeccc-ccccccCccccCCCCCcEE
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH-LPNELG-QLRRLRFIRFGFN-KLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~-~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L 140 (183)
.++.++-++..+...--+.+..++.++.|.+.++.--+. .-+-++ -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466667776666644445555666666666655432100 000011 2456777777655 4554434455566666666
Q ss_pred Eccc
Q 030065 141 RLYN 144 (183)
Q Consensus 141 ~L~~ 144 (183)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=0.15 Score=37.72 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccc-ccCcccc-CCCCCcEEEcccC-cccCCccccccCCCCCcEE
Q 030065 88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIG-VLSKLQTLRLYNN-SFTGPIPNSLLNLSKLEVF 164 (183)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 164 (183)
.++.++-++..|..+--..+..++.++.|.+.++.--+ .--..++ ..++|+.|++++| .||..=-..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 57889999999987777778888888888888775321 1111122 3588999999988 4663222345677777777
Q ss_pred eccC
Q 030065 165 DAIY 168 (183)
Q Consensus 165 ~l~~ 168 (183)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.75 E-value=1 Score=21.67 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=10.1
Q ss_pred CCCcEEeccCCccc
Q 030065 159 SKLEVFDAIYNVID 172 (183)
Q Consensus 159 ~~L~~L~l~~N~l~ 172 (183)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777775
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.73 E-value=1.4 Score=21.39 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=10.0
Q ss_pred CCCcEEeccCCccc
Q 030065 159 SKLEVFDAIYNVID 172 (183)
Q Consensus 159 ~~L~~L~l~~N~l~ 172 (183)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777774
No 83
>PF15240 Pro-rich: Proline-rich
Probab=80.69 E-value=0.99 Score=32.56 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=18.9
Q ss_pred ChhHHHHHHHhhhhccCCChHHH
Q 030065 1 MLLVQYSIASLAMTTLSNLTTDQ 23 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (183)
|||||+..|++|.+++.....|+
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv 23 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDV 23 (179)
T ss_pred ChhHHHHHHHHHhhhcccccccc
Confidence 89999999999998887766554
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.38 E-value=1 Score=37.08 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=25.5
Q ss_pred CCCCcEEEecccc-cccccCcccc-CCCCCcEEEcccCc-ccCC-ccccccCCCCCcEEeccCC
Q 030065 110 LRRLRFIRFGFNK-LSGSIPTWIG-VLSKLQTLRLYNNS-FTGP-IPNSLLNLSKLEVFDAIYN 169 (183)
Q Consensus 110 l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~l~~N 169 (183)
++.|+.++++... ++...-..+. .+++|+.|.+.++. ++.. +-.....+++|+.|+++.+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4555555555544 3322212222 24555555544443 3311 1111234555666665544
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.60 E-value=3.1 Score=35.42 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCCCcEEEecCccCCCCCh---hhhcCCCCCcEEEeccc--ccccccCccccC--CCCCcEEEcccCcccCCcccc---
Q 030065 85 NLSFLVSLDVAHNNFHGHLP---NELGQLRRLRFIRFGFN--KLSGSIPTWIGV--LSKLQTLRLYNNSFTGPIPNS--- 154 (183)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~--- 154 (183)
+.+.+..+.+++|++. .+. .--...+.|..|+|++| .+. ...++.+ ...|+.|.|.+|.+...+-..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 3456677778888775 221 22234678888888888 333 1222322 245788888888887544321
Q ss_pred ----ccCCCCCcEEeccCCccc
Q 030065 155 ----LLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 155 ----~~~l~~L~~L~l~~N~l~ 172 (183)
-..+|+|..|| +..+.
T Consensus 293 v~~i~~~FPKL~~LD--G~ev~ 312 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD--GVEVQ 312 (585)
T ss_pred HHHHHHhcchheeec--CcccC
Confidence 12567776655 44443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.87 E-value=10 Score=32.46 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=41.8
Q ss_pred CCCCCcEEEecccccccccCc---cccCCCCCcEEEcccC--cccCCccccccC--CCCCcEEeccCCccccc
Q 030065 109 QLRRLRFIRFGFNKLSGSIPT---WIGVLSKLQTLRLYNN--SFTGPIPNSLLN--LSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 109 ~l~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~L~~n--~l~~~~p~~~~~--l~~L~~L~l~~N~l~g~ 174 (183)
+.+.+..++|++|++. .+.. .-...++|..|+|++| .+. . ..++.. ...|+.|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccccc
Confidence 3567888899999987 3321 1224588999999999 444 1 223332 34578889999988643
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.58 E-value=0.86 Score=38.33 Aligned_cols=87 Identities=25% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCCCcEEEecCccCCCCC----hhhhcCCCC-CcEEEecccccccc----cCccccCC-CCCcEEEcccCcccCC----c
Q 030065 86 LSFLVSLDVAHNNFHGHL----PNELGQLRR-LRFIRFGFNKLSGS----IPTWIGVL-SKLQTLRLYNNSFTGP----I 151 (183)
Q Consensus 86 l~~L~~L~l~~n~l~~~~----p~~~~~l~~-L~~L~l~~n~l~~~----~p~~~~~l-~~L~~L~L~~n~l~~~----~ 151 (183)
..++++|.+.++.++... -..+...+. +..+++..|.+.+. +...+..+ ..++++++..|.++.. +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 345555555555554110 011222333 44455666655422 12223334 4567777777776632 2
Q ss_pred cccccCCCCCcEEeccCCccc
Q 030065 152 PNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 152 p~~~~~l~~L~~L~l~~N~l~ 172 (183)
...+..+++++.+.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 233455666777777776654
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.31 E-value=20 Score=16.64 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=9.4
Q ss_pred CCCCcEEeccCCc
Q 030065 158 LSKLEVFDAIYNV 170 (183)
Q Consensus 158 l~~L~~L~l~~N~ 170 (183)
+++|+.|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888874
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.92 E-value=19 Score=36.77 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=27.4
Q ss_pred EecCccCCCCChhhhcCCCCCcEEEecccccccc
Q 030065 93 DVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS 126 (183)
Q Consensus 93 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 126 (183)
||++|+|+..-+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5789999944455677899999999999988643
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.47 E-value=40 Score=34.69 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=25.4
Q ss_pred EccCCCCcccCCccCCCCCCCcEEEecCccCC
Q 030065 69 NLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH 100 (183)
Q Consensus 69 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 100 (183)
+|++|.|+-.-+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999444445677899999999999875
Done!