Query 030065
Match_columns 183
No_of_seqs 180 out of 3303
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-28 1.6E-32 189.0 14.2 162 17-180 2-170 (313)
2 4eco_A Uncharacterized protein 99.9 1.8E-25 6E-30 189.4 10.0 160 18-179 27-295 (636)
3 3rgz_A Protein brassinosteroid 99.9 2.9E-24 1E-28 185.3 12.5 158 14-175 5-194 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1.4E-23 4.9E-28 182.6 10.0 160 18-179 266-537 (876)
5 4fcg_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 161.0 5.7 157 17-177 23-200 (328)
6 3e6j_A Variable lymphocyte rec 99.8 2.1E-20 7.2E-25 139.6 12.4 138 41-180 9-155 (229)
7 1w8a_A SLIT protein; signaling 99.8 8E-20 2.7E-24 133.0 9.0 134 47-180 4-147 (192)
8 2v9t_B SLIT homolog 2 protein 99.8 5.6E-19 1.9E-23 131.2 12.0 131 46-176 6-145 (220)
9 2o6s_A Variable lymphocyte rec 99.8 8.2E-19 2.8E-23 128.8 12.4 133 47-180 3-144 (208)
10 2o6r_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 125.3 10.8 129 47-176 3-141 (177)
11 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.6E-23 129.1 10.9 129 48-176 8-146 (220)
12 2wfh_A SLIT homolog 2 protein 99.7 8.9E-18 3E-22 122.3 10.9 126 47-173 6-140 (193)
13 1ogq_A PGIP-2, polygalacturona 99.7 2E-18 6.9E-23 134.4 6.8 118 62-179 75-194 (313)
14 2o6q_A Variable lymphocyte rec 99.7 3.8E-17 1.3E-21 124.5 12.8 109 64-172 38-146 (270)
15 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-17 5.1E-22 123.4 10.1 117 61-177 55-171 (220)
16 3rgz_A Protein brassinosteroid 99.7 9.8E-18 3.3E-22 144.7 9.8 119 63-181 442-560 (768)
17 4fcg_A Uncharacterized protein 99.7 1.4E-17 4.9E-22 130.5 9.8 115 63-179 183-297 (328)
18 3m19_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 121.7 12.6 113 63-175 59-171 (251)
19 3v47_A TOLL-like receptor 5B a 99.7 3.4E-17 1.1E-21 132.9 10.5 118 63-180 30-150 (455)
20 2z81_A CD282 antigen, TOLL-lik 99.7 3.3E-17 1.1E-21 135.8 9.9 118 63-180 26-144 (549)
21 3m19_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 119.8 12.5 109 64-172 36-144 (251)
22 2xot_A Amphoterin-induced prot 99.7 6.8E-17 2.3E-21 128.1 10.7 133 47-180 14-156 (361)
23 3rfs_A Internalin B, repeat mo 99.7 2.3E-16 7.7E-21 120.4 12.8 116 61-176 83-198 (272)
24 4g8a_A TOLL-like receptor 4; l 99.7 8E-17 2.7E-21 134.9 11.0 112 63-174 52-163 (635)
25 4b8c_D Glucose-repressible alc 99.7 8.4E-18 2.9E-22 144.4 4.7 113 63-179 224-336 (727)
26 2je0_A Acidic leucine-rich nuc 99.7 6.7E-17 2.3E-21 112.5 8.0 112 63-176 17-130 (149)
27 2v9t_B SLIT homolog 2 protein 99.7 2.4E-16 8.3E-21 116.9 11.2 113 61-173 54-166 (220)
28 1p9a_G Platelet glycoprotein I 99.7 5.9E-16 2E-20 119.3 13.3 118 61-181 75-193 (290)
29 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7E-21 114.9 10.0 111 66-179 11-122 (192)
30 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.5E-21 125.8 9.7 135 43-179 22-169 (353)
31 3g39_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 111.5 10.9 108 66-176 12-119 (170)
32 3rfs_A Internalin B, repeat mo 99.7 6.2E-16 2.1E-20 118.0 12.7 117 61-177 107-223 (272)
33 2wfh_A SLIT homolog 2 protein 99.7 7.3E-16 2.5E-20 112.1 12.2 111 66-181 13-123 (193)
34 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.5E-21 112.7 8.5 111 62-177 48-164 (168)
35 2o6s_A Variable lymphocyte rec 99.7 6.6E-16 2.3E-20 113.2 11.8 117 61-177 50-166 (208)
36 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.7E-20 117.1 11.9 111 63-173 56-167 (285)
37 2r9u_A Variable lymphocyte rec 99.7 1E-15 3.4E-20 109.7 10.9 105 66-174 15-120 (174)
38 3e6j_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 114.1 11.4 115 61-176 62-176 (229)
39 3zyi_A Leucine-rich repeat-con 99.6 3.7E-16 1.3E-20 127.2 9.2 118 63-180 75-192 (452)
40 3vq2_A TLR4, TOLL-like recepto 99.6 1.1E-15 3.8E-20 128.1 12.0 115 63-177 56-171 (606)
41 3v47_A TOLL-like receptor 5B a 99.6 1.1E-15 3.7E-20 124.0 11.5 116 62-177 298-413 (455)
42 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.7E-20 111.3 9.9 106 63-172 88-194 (197)
43 2id5_A Lingo-1, leucine rich r 99.6 1E-15 3.5E-20 125.0 10.8 112 63-174 32-143 (477)
44 3oja_B Anopheles plasmodium-re 99.6 2E-15 6.9E-20 126.9 12.8 111 63-173 75-185 (597)
45 2z66_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 117.9 10.4 115 63-177 126-241 (306)
46 2o6q_A Variable lymphocyte rec 99.6 3.1E-15 1E-19 113.9 12.4 110 63-172 85-194 (270)
47 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.5E-20 114.5 9.5 108 63-172 31-144 (239)
48 3t6q_A CD180 antigen; protein- 99.6 1.4E-15 4.7E-20 127.5 11.3 111 63-173 33-143 (606)
49 3vq2_A TLR4, TOLL-like recepto 99.6 1.9E-15 6.7E-20 126.6 12.0 117 63-179 32-149 (606)
50 1ozn_A Reticulon 4 receptor; N 99.6 2.8E-15 9.7E-20 114.8 11.9 116 62-177 79-195 (285)
51 3j0a_A TOLL-like receptor 5; m 99.6 1.3E-15 4.4E-20 132.7 11.0 124 51-176 14-140 (844)
52 2xot_A Amphoterin-induced prot 99.6 1.3E-15 4.5E-20 120.7 10.1 115 61-177 62-180 (361)
53 4eco_A Uncharacterized protein 99.6 3E-16 1E-20 132.9 6.5 126 50-176 192-347 (636)
54 4g8a_A TOLL-like receptor 4; l 99.6 1.9E-15 6.5E-20 126.6 11.3 117 62-178 75-192 (635)
55 2z62_A TOLL-like receptor 4, v 99.6 2.3E-15 7.9E-20 114.8 10.7 114 62-175 51-165 (276)
56 1dce_A Protein (RAB geranylger 99.6 1.3E-15 4.6E-20 127.4 9.9 109 64-177 442-551 (567)
57 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 6E-20 107.3 8.8 111 63-176 24-137 (168)
58 2z62_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 113.3 11.1 116 63-178 28-144 (276)
59 1p9a_G Platelet glycoprotein I 99.6 4.5E-15 1.5E-19 114.4 11.3 116 62-181 54-169 (290)
60 2ft3_A Biglycan; proteoglycan, 99.6 6.7E-15 2.3E-19 115.1 12.4 123 47-172 29-160 (332)
61 3zyj_A Leucine-rich repeat-con 99.6 4.8E-15 1.6E-19 120.2 11.2 128 53-180 45-181 (440)
62 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 103.6 12.3 112 65-180 9-120 (177)
63 2z66_A Variable lymphocyte rec 99.6 2.4E-15 8.3E-20 116.2 8.9 115 62-176 149-265 (306)
64 1ziw_A TOLL-like receptor 3; i 99.6 4.1E-15 1.4E-19 126.3 11.0 113 63-175 25-137 (680)
65 2z63_A TOLL-like receptor 4, v 99.6 3.4E-15 1.2E-19 124.0 9.6 118 63-180 421-539 (570)
66 1xku_A Decorin; proteoglycan, 99.6 1.2E-14 4.2E-19 113.4 11.0 113 63-180 171-283 (330)
67 2z7x_B TOLL-like receptor 1, v 99.6 1.2E-14 4.2E-19 119.8 11.0 116 61-178 322-462 (520)
68 4ezg_A Putative uncharacterize 99.6 1.2E-14 4.2E-19 105.7 9.6 109 62-174 65-174 (197)
69 2z81_A CD282 antigen, TOLL-lik 99.6 8.4E-15 2.9E-19 121.3 9.5 119 61-179 48-168 (549)
70 1xku_A Decorin; proteoglycan, 99.6 2.6E-14 8.7E-19 111.6 11.6 121 48-171 28-157 (330)
71 2z63_A TOLL-like receptor 4, v 99.6 2E-14 6.7E-19 119.5 11.6 116 62-177 51-167 (570)
72 3oja_A Leucine-rich immune mol 99.6 8.5E-15 2.9E-19 120.5 9.2 123 51-178 109-232 (487)
73 2id5_A Lingo-1, leucine rich r 99.6 1.2E-14 4E-19 118.8 9.9 112 62-173 55-166 (477)
74 1wwl_A Monocyte differentiatio 99.6 4E-15 1.4E-19 115.6 6.8 113 63-176 121-245 (312)
75 3o6n_A APL1; leucine-rich repe 99.6 3.7E-14 1.3E-18 113.1 11.9 110 63-173 69-179 (390)
76 1wwl_A Monocyte differentiatio 99.6 9E-15 3.1E-19 113.6 8.1 117 63-180 149-273 (312)
77 3o6n_A APL1; leucine-rich repe 99.5 1E-14 3.4E-19 116.4 8.4 113 63-177 45-159 (390)
78 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.4E-19 103.3 8.5 104 64-171 43-152 (176)
79 3g39_A Variable lymphocyte rec 99.5 2E-14 6.8E-19 102.4 8.8 103 48-150 6-117 (170)
80 4ecn_A Leucine-rich repeat pro 99.5 5.1E-15 1.8E-19 129.1 6.6 124 51-176 435-589 (876)
81 2xwt_C Thyrotropin receptor; s 99.5 1.4E-14 4.8E-19 108.3 8.1 117 62-181 54-177 (239)
82 2z80_A TOLL-like receptor 2, v 99.5 2.1E-14 7E-19 113.2 9.4 117 61-178 74-193 (353)
83 2ifg_A High affinity nerve gro 99.5 3.6E-14 1.2E-18 111.5 10.7 102 69-173 14-117 (347)
84 2je0_A Acidic leucine-rich nuc 99.5 8.2E-15 2.8E-19 101.9 6.2 106 61-168 40-149 (149)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.3E-14 1.1E-18 118.5 11.0 117 61-179 351-492 (562)
86 2z7x_B TOLL-like receptor 1, v 99.5 2.9E-14 1E-18 117.5 10.5 108 63-173 21-129 (520)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2.4E-14 8.3E-19 119.3 9.6 108 63-173 52-160 (562)
88 3t6q_A CD180 antigen; protein- 99.5 4E-14 1.4E-18 118.7 10.9 110 64-174 426-538 (606)
89 1ziw_A TOLL-like receptor 3; i 99.5 2.6E-14 8.8E-19 121.4 9.0 114 63-176 49-162 (680)
90 3j0a_A TOLL-like receptor 5; m 99.5 3.9E-14 1.3E-18 123.4 10.2 118 61-178 46-167 (844)
91 1a9n_A U2A', U2A'; complex (nu 99.5 1E-14 3.6E-19 104.2 5.2 109 63-177 19-130 (176)
92 4glp_A Monocyte differentiatio 99.5 1.1E-14 3.7E-19 113.0 5.4 116 62-179 144-270 (310)
93 3zyj_A Leucine-rich repeat-con 99.5 1.2E-13 4.2E-18 111.9 11.1 115 63-180 136-275 (440)
94 2ft3_A Biglycan; proteoglycan, 99.5 2.2E-14 7.5E-19 112.1 6.4 84 88-172 194-277 (332)
95 3zyi_A Leucine-rich repeat-con 99.5 2E-13 6.8E-18 111.0 11.2 116 62-180 146-286 (452)
96 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-13 4.9E-18 107.0 9.3 107 63-172 120-227 (317)
97 3oja_B Anopheles plasmodium-re 99.5 7.1E-14 2.4E-18 117.4 8.1 141 36-177 4-165 (597)
98 4b8c_D Glucose-repressible alc 99.5 9.3E-14 3.2E-18 119.3 7.8 157 18-178 129-311 (727)
99 3o53_A Protein LRIM1, AGAP0063 99.5 7E-14 2.4E-18 108.8 6.3 112 62-177 143-256 (317)
100 1h6u_A Internalin H; cell adhe 99.5 5.2E-13 1.8E-17 103.6 11.1 103 62-172 84-186 (308)
101 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.6E-18 115.9 7.4 113 43-172 35-153 (571)
102 4glp_A Monocyte differentiatio 99.4 1.3E-13 4.4E-18 106.9 7.1 116 64-179 92-244 (310)
103 1h6u_A Internalin H; cell adhe 99.4 6.8E-13 2.3E-17 102.9 11.2 102 63-172 63-164 (308)
104 2r9u_A Variable lymphocyte rec 99.4 4.2E-13 1.5E-17 95.9 9.2 87 63-149 33-119 (174)
105 3oja_A Leucine-rich immune mol 99.4 9.7E-14 3.3E-18 114.1 6.3 112 62-177 143-256 (487)
106 1h6t_A Internalin B; cell adhe 99.4 6.5E-13 2.2E-17 102.3 10.1 102 63-172 90-191 (291)
107 1xeu_A Internalin C; cellular 99.4 8.8E-13 3E-17 100.2 10.2 104 62-174 62-165 (263)
108 1h6t_A Internalin B; cell adhe 99.4 1.3E-12 4.3E-17 100.7 11.1 107 62-176 67-173 (291)
109 1xeu_A Internalin C; cellular 99.4 8.6E-13 2.9E-17 100.2 9.8 105 61-174 83-187 (263)
110 4fmz_A Internalin; leucine ric 99.4 6.2E-13 2.1E-17 104.2 9.3 109 62-176 220-328 (347)
111 4fmz_A Internalin; leucine ric 99.4 6.5E-13 2.2E-17 104.1 9.1 106 61-172 241-346 (347)
112 1dce_A Protein (RAB geranylger 99.4 6.5E-13 2.2E-17 111.2 9.0 102 61-166 461-567 (567)
113 1ds9_A Outer arm dynein; leuci 99.4 2.8E-15 9.5E-20 109.2 -5.9 110 62-177 47-158 (198)
114 4ay9_X Follicle-stimulating ho 99.4 1.2E-12 4.1E-17 103.1 8.8 100 49-149 7-118 (350)
115 2ifg_A High affinity nerve gro 99.4 1.6E-12 5.4E-17 102.1 9.3 99 50-149 7-117 (347)
116 1m9s_A Internalin B; cell inva 99.4 3.1E-12 1.1E-16 107.8 11.2 102 63-172 87-188 (605)
117 3cvr_A Invasion plasmid antige 99.4 6.7E-13 2.3E-17 111.0 6.9 39 138-177 210-248 (571)
118 1o6v_A Internalin A; bacterial 99.4 3E-12 1E-16 104.5 10.5 40 131-172 349-388 (466)
119 1m9s_A Internalin B; cell inva 99.4 4E-12 1.4E-16 107.1 10.9 106 61-174 107-212 (605)
120 1o6v_A Internalin A; bacterial 99.3 4.3E-12 1.5E-16 103.5 10.2 108 61-176 263-370 (466)
121 3bz5_A Internalin-J, INLJ; leu 99.3 6.9E-12 2.4E-16 102.4 10.2 101 63-175 64-164 (457)
122 2ca6_A RAN GTPase-activating p 99.3 5E-13 1.7E-17 106.5 1.5 114 63-176 187-320 (386)
123 1ds9_A Outer arm dynein; leuci 99.3 1.2E-14 4E-19 105.9 -7.3 104 65-173 20-129 (198)
124 3g06_A SSPH2 (leucine-rich rep 99.3 8.5E-12 2.9E-16 105.4 8.6 82 87-177 221-302 (622)
125 4ay9_X Follicle-stimulating ho 99.3 1.5E-11 5E-16 96.9 9.3 110 66-180 12-124 (350)
126 3g06_A SSPH2 (leucine-rich rep 99.3 2.6E-12 8.9E-17 108.5 5.2 120 42-173 13-155 (622)
127 3bz5_A Internalin-J, INLJ; leu 99.3 2.4E-11 8.1E-16 99.2 10.6 100 63-173 85-184 (457)
128 2ast_B S-phase kinase-associat 99.3 1.3E-12 4.3E-17 101.9 2.7 109 63-172 70-182 (336)
129 2ast_B S-phase kinase-associat 99.3 4.3E-13 1.5E-17 104.5 0.0 108 63-170 118-233 (336)
130 1jl5_A Outer protein YOPM; leu 99.3 6.6E-12 2.3E-16 102.4 6.7 84 87-178 317-417 (454)
131 2ca6_A RAN GTPase-activating p 99.2 7.1E-13 2.4E-17 105.5 -0.6 111 63-173 159-288 (386)
132 3goz_A Leucine-rich repeat-con 99.2 5.6E-12 1.9E-16 99.7 2.5 113 64-176 52-184 (362)
133 3goz_A Leucine-rich repeat-con 99.2 6.1E-12 2.1E-16 99.5 2.3 112 63-174 22-153 (362)
134 1jl5_A Outer protein YOPM; leu 99.2 1.4E-10 4.7E-15 94.6 10.3 78 63-148 131-208 (454)
135 1z7x_W Ribonuclease inhibitor; 99.0 1.1E-11 3.7E-16 100.5 -1.3 87 87-173 313-412 (461)
136 1z7x_W Ribonuclease inhibitor; 99.0 1.3E-11 4.5E-16 99.9 -4.0 62 63-124 227-297 (461)
137 3rw6_A Nuclear RNA export fact 98.9 4.9E-11 1.7E-15 90.7 -2.2 66 109-176 168-237 (267)
138 3un9_A NLR family member X1; l 98.9 2.9E-10 9.9E-15 90.5 1.6 87 86-172 154-252 (372)
139 3un9_A NLR family member X1; l 98.8 9.9E-10 3.4E-14 87.4 0.5 111 63-173 101-225 (372)
140 3rw6_A Nuclear RNA export fact 98.7 9.2E-09 3.1E-13 78.2 4.6 79 85-165 168-257 (267)
141 3ogk_B Coronatine-insensitive 98.7 3.1E-09 1.1E-13 88.6 0.2 92 83-174 432-528 (592)
142 1io0_A Tropomodulin; LRR prote 98.6 4E-09 1.4E-13 75.9 0.6 111 62-172 35-164 (185)
143 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.4E-12 73.6 8.3 92 87-181 226-318 (329)
144 3sb4_A Hypothetical leucine ri 98.6 1.4E-07 4.7E-12 73.4 7.2 102 63-166 226-328 (329)
145 3ogk_B Coronatine-insensitive 98.4 1.4E-07 4.7E-12 78.6 4.6 79 63-142 164-250 (592)
146 2p1m_B Transport inhibitor res 98.3 3.6E-08 1.2E-12 82.1 -1.5 88 84-172 429-519 (594)
147 2p1m_B Transport inhibitor res 98.3 1.5E-07 5E-12 78.4 0.5 107 63-169 105-221 (594)
148 2ra8_A Uncharacterized protein 98.2 2E-07 6.8E-12 73.8 0.6 109 62-173 171-293 (362)
149 1io0_A Tropomodulin; LRR prote 98.2 6.9E-07 2.4E-11 64.0 2.8 95 79-173 28-137 (185)
150 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.2E-11 62.3 3.6 84 63-146 61-150 (176)
151 3e4g_A ATP synthase subunit S, 98.1 2.6E-06 9E-11 60.6 4.0 95 78-172 52-153 (176)
152 2ra8_A Uncharacterized protein 98.1 3.9E-06 1.3E-10 66.4 4.9 112 62-173 192-321 (362)
153 4fdw_A Leucine rich hypothetic 98.0 2E-05 6.8E-10 63.1 8.9 113 64-181 249-366 (401)
154 4fdw_A Leucine rich hypothetic 97.8 9.2E-05 3.1E-09 59.3 8.7 50 130-181 266-320 (401)
155 3rfe_A Platelet glycoprotein I 97.4 0.00042 1.4E-08 46.6 6.2 56 67-124 12-68 (130)
156 3rfe_A Platelet glycoprotein I 97.3 0.00056 1.9E-08 46.0 6.0 57 90-148 11-68 (130)
157 4h09_A Hypothetical leucine ri 97.1 0.0022 7.6E-08 50.3 8.5 113 64-182 241-354 (379)
158 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00026 8.7E-09 51.2 2.3 111 62-172 40-170 (197)
159 4gt6_A Cell surface protein; l 96.8 0.0092 3.2E-07 47.1 9.6 87 81-171 282-369 (394)
160 4h09_A Hypothetical leucine ri 96.7 0.013 4.5E-07 45.8 9.7 97 81-182 234-331 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.001 3.5E-08 48.0 2.7 87 83-169 37-136 (197)
162 4gt6_A Cell surface protein; l 96.5 0.0087 3E-07 47.3 7.4 102 64-171 289-390 (394)
163 4fs7_A Uncharacterized protein 96.4 0.021 7.1E-07 45.1 9.3 81 85-169 295-376 (394)
164 4fs7_A Uncharacterized protein 96.3 0.0086 2.9E-07 47.3 6.6 97 63-164 297-393 (394)
165 2lz0_A Uncharacterized protein 52.9 24 0.0008 21.9 4.3 36 107-143 16-51 (100)
166 3ox7_P MH027; urokinase-type p 33.7 9.5 0.00032 16.4 0.1 10 48-57 5-14 (23)
167 2lz0_A Uncharacterized protein 24.7 1.2E+02 0.0043 18.4 6.4 48 73-121 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.7e-28 Score=189.04 Aligned_cols=162 Identities=28% Similarity=0.476 Sum_probs=147.1
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCC--ceeeeecCCC--CcEEEEEccCCCCcc--cCCccCCCCCCCc
Q 030065 17 SNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICS--WVGISCGSRH--QRVTALNLSDMGLGG--TIPLHLGNLSFLV 90 (183)
Q Consensus 17 ~~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~l~~~~l~~--~~~~~l~~l~~L~ 90 (183)
.|.++|.++|++||.++. ++. .+.+|....++|. |.||.|.... .+++.|+++++.+++ .+|..+..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 467889999999999985 444 6889988888998 9999998543 789999999999998 8999999999999
Q ss_pred EEEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCC
Q 030065 91 SLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYN 169 (183)
Q Consensus 91 ~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N 169 (183)
+|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999899999999999999999999999899999999999999999999
Q ss_pred cccccCCcccc
Q 030065 170 VIDGTTTKMTF 180 (183)
Q Consensus 170 ~l~g~ip~~~~ 180 (183)
.++|.+|..++
T Consensus 160 ~l~~~~p~~l~ 170 (313)
T 1ogq_A 160 RISGAIPDSYG 170 (313)
T ss_dssp CCEEECCGGGG
T ss_pred cccCcCCHHHh
Confidence 99999887654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.8e-25 Score=189.39 Aligned_cols=160 Identities=22% Similarity=0.320 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCC-------CCCCCCCCCCc---eeeeecCCCCcEEEEEccCCCCcccCCccCCCCC
Q 030065 18 NLTTDQSALLAFKARVVDYRSDLTN-------NWSISYPICSW---VGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLS 87 (183)
Q Consensus 18 ~~~~~~~~l~~~k~~~~~~~~~~~~-------~w~~~~~~c~w---~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~ 87 (183)
....|..||.++|.++.++.|.... +|....++|.| .||.|... ++|+.|+++++++.|.+|+.+..++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457899999999999877776444 79988999999 99999854 7999999999999999999999999
Q ss_pred CCcEEEecCcc---------------------------------------------------------------------
Q 030065 88 FLVSLDVAHNN--------------------------------------------------------------------- 98 (183)
Q Consensus 88 ~L~~L~l~~n~--------------------------------------------------------------------- 98 (183)
+|++|++++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999884
Q ss_pred ---------CCCCChhhhcCCCCCcEEEecccccccc-----------------cCcccc--CCCCCcEEEcccCcccCC
Q 030065 99 ---------FHGHLPNELGQLRRLRFIRFGFNKLSGS-----------------IPTWIG--VLSKLQTLRLYNNSFTGP 150 (183)
Q Consensus 99 ---------l~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~ 150 (183)
+++ +|..++.+++|++|++++|.+++. +|..++ ++++|++|++++|.+.|.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 344 788899999999999999999985 999998 999999999999999999
Q ss_pred ccccccCCCCCcEEeccCCc-ccc-cCCccc
Q 030065 151 IPNSLLNLSKLEVFDAIYNV-IDG-TTTKMT 179 (183)
Q Consensus 151 ~p~~~~~l~~L~~L~l~~N~-l~g-~ip~~~ 179 (183)
+|..++++++|++|++++|+ ++| .+|..+
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~ 295 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDW 295 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHH
Confidence 99999999999999999998 998 788654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.9e-24 Score=185.30 Aligned_cols=158 Identities=24% Similarity=0.329 Sum_probs=116.0
Q ss_pred hccCCChHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCceeeeecCCCCcEEEEEccCCCCccc---CC----------
Q 030065 14 TTLSNLTTDQSALLAFKARVVDYRSDLTNNWSISYPICSWVGISCGSRHQRVTALNLSDMGLGGT---IP---------- 80 (183)
Q Consensus 14 ~~~~~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~---~~---------- 80 (183)
++.++.++|++||++||.++. ++. .+.+|....+||.|.||.|. .++|+.|+++++++.|. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 344557889999999999997 555 78999878899999999997 47999999999998876 44
Q ss_pred -------------ccCCCCCCCcEEEecCccCCCCChh--hhcCCCCCcEEEecccccccccCccc-cCCCCCcEEEccc
Q 030065 81 -------------LHLGNLSFLVSLDVAHNNFHGHLPN--ELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYN 144 (183)
Q Consensus 81 -------------~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~ 144 (183)
..+..+++|++|++++|.++|.+|. .++.+++|++|++++|.+++.+|..+ ..+++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 4567778888888888888877777 77888888888888888877776654 5677777777777
Q ss_pred CcccCCcccc---ccCCCCCcEEeccCCcccccC
Q 030065 145 NSFTGPIPNS---LLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 145 n~l~~~~p~~---~~~l~~L~~L~l~~N~l~g~i 175 (183)
|.+++..|.. +.++++|++|++++|.+++.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccC
Confidence 7776555443 444444444444444444433
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.4e-23 Score=182.62 Aligned_cols=160 Identities=22% Similarity=0.296 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCCCCCCCCCC--CCc------------eeeeecCCCCcEEEEEccCCCCcccCCccC
Q 030065 18 NLTTDQSALLAFKARVVDYRSDLTNNWSISYPI--CSW------------VGISCGSRHQRVTALNLSDMGLGGTIPLHL 83 (183)
Q Consensus 18 ~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~~~~--c~w------------~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l 83 (183)
...+|..+|++||.++.++.|....+|.. .++ |.| .||.|.. .++|+.|+++++++.|.+|+.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~-~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l 343 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGKNWRYYSGTIN-NTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAI 343 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCCSSCS-SCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGG
T ss_pred cchHHHHHHHHHHHHcCCCCCCcCCCccc-ccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHH
Confidence 34679999999999996443332222321 244 999 9999985 5789999999999999999999
Q ss_pred CCCCCCcEEEe-cCccCCCC------------------------------------------------------------
Q 030065 84 GNLSFLVSLDV-AHNNFHGH------------------------------------------------------------ 102 (183)
Q Consensus 84 ~~l~~L~~L~l-~~n~l~~~------------------------------------------------------------ 102 (183)
.++++|++|++ ++|.++|.
T Consensus 344 ~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l 423 (876)
T 4ecn_A 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423 (876)
T ss_dssp GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCC
T ss_pred hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccccc
Confidence 99999999999 77755443
Q ss_pred ----------------ChhhhcCCCCCcEEEeccccccc-----------------ccCcccc--CCCCCcEEEcccCcc
Q 030065 103 ----------------LPNELGQLRRLRFIRFGFNKLSG-----------------SIPTWIG--VLSKLQTLRLYNNSF 147 (183)
Q Consensus 103 ----------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l 147 (183)
+|..+..+++|++|++++|++++ .+|..++ .+++|++|+|++|.+
T Consensus 424 ~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred chhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence 78889999999999999999998 3899887 999999999999999
Q ss_pred cCCccccccCCCCCcEEeccCCc-ccc-cCCccc
Q 030065 148 TGPIPNSLLNLSKLEVFDAIYNV-IDG-TTTKMT 179 (183)
Q Consensus 148 ~~~~p~~~~~l~~L~~L~l~~N~-l~g-~ip~~~ 179 (183)
.+.+|..+.++++|+.|++++|+ ++| .+|..+
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i 537 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred CccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence 99999999999999999999998 998 788643
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=6.4e-23 Score=160.99 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCCCCC----CCCCCCCCceeeeecC--------CCCcEEEEEccCCCCcccCCccCC
Q 030065 17 SNLTTDQSALLAFKARVVDYRSDLTNNW----SISYPICSWVGISCGS--------RHQRVTALNLSDMGLGGTIPLHLG 84 (183)
Q Consensus 17 ~~~~~~~~~l~~~k~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~l~~L~l~~~~l~~~~~~~l~ 84 (183)
....++..+|++||..+..++..+...| .....+|.|.|+.|.. ...+++.|++++|.++ .+|..+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 4567899999999998866776677788 4566899999999941 2356777777777777 6676677
Q ss_pred CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccC-------
Q 030065 85 NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLN------- 157 (183)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------- 157 (183)
.+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 7777777777777777 66666667777777777777776 66666666666666666666555555554432
Q ss_pred --CCCCcEEeccCCcccccCCc
Q 030065 158 --LSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 158 --l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|++|++++|.++ .+|.
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~ 200 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPA 200 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCG
T ss_pred ccCCCCCEEECcCCCcC-cchH
Confidence 555555555555555 4443
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=2.1e-20 Score=139.60 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCC
Q 030065 41 TNNWSISYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLR 111 (183)
Q Consensus 41 ~~~w~~~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 111 (183)
...|......|.|.++.|... ..++++|++++|.+++..|..+..+++|++|++++|.++...+..+..++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 445667888999999999742 25799999999999987788899999999999999999855445678999
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++ +|...|
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 155 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAF 155 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC-CCTTTT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc-cCHHHH
Confidence 9999999999999655666789999999999999999 889999999999999999999994 454444
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=8e-20 Score=132.99 Aligned_cols=134 Identities=25% Similarity=0.361 Sum_probs=116.1
Q ss_pred CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCc-cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065 47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPL-HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116 (183)
Q Consensus 47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 116 (183)
....|.|..+.|... ..++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 345678888888642 14789999999999855443 37899999999999999998889999999999999
Q ss_pred EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
++++|++++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|.+++..+...|
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence 9999999987778899999999999999999988888999999999999999999987765443
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.6e-19 Score=131.15 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=111.1
Q ss_pred CCCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065 46 ISYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116 (183)
Q Consensus 46 ~~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 116 (183)
+..+.|.|..+.|... ..+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 6 P~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 6 PAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp CTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred CCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 3456778888888642 1478999999999996666678899999999999999997778899999999999
Q ss_pred EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
++++|+++...+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..+
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 999999994444557889999999999999997777888999999999999999995544
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=8.2e-19 Score=128.78 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=104.1
Q ss_pred CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
..+.|.|.++.|... ..++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 345688999999742 24689999999999855555577889999999999999855555678899999999
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|...|
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~ 144 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHh
Confidence 99999985555567888999999999999985444457788899999999998884 444443
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.78 E-value=1e-18 Score=125.28 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=109.2
Q ss_pred CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
..+.|.|.++.|... ..+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 345678999999742 25799999999999965555678899999999999999965556678999999999
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccCCcccc-ccCCCCCcEEeccCCcccccCC
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|++++..+..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+.+..|
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999666666889999999999999999 45554 5789999999999999998766
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=129.07 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCc-cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 48 YPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPL-HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 48 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
.+.|.|..+.|... ...++.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 34556666666431 12455666666666644332 245666666666666666654444566666666666
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|++++..+..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 66666665444556666666666666666665445556666666666666666665444
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=8.9e-18 Score=122.31 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=107.4
Q ss_pred CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
..+.|.|..+.|... ..++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 345667777777632 257999999999998 7888899999999999999999977777899999999999
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+++|++++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999997777789999999999999999994433457889999999999998864
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=2e-18 Score=134.42 Aligned_cols=118 Identities=27% Similarity=0.425 Sum_probs=108.8
Q ss_pred CCcEEEEEccC-CCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 62 HQRVTALNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 62 ~~~l~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
.+++++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46899999995 99998999999999999999999999998999999999999999999999998899999999999999
Q ss_pred EcccCcccCCccccccCCC-CCcEEeccCCcccccCCccc
Q 030065 141 RLYNNSFTGPIPNSLLNLS-KLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~g~ip~~~ 179 (183)
++++|.+++.+|..+..++ +|+.|++++|.++|.+|..+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 9999999989999999988 89999999999998888754
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=3.8e-17 Score=124.54 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=67.4
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.+++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46777777777774444466777777777777777773333344566677777777776664334445566666666666
Q ss_pred cCcccCCccccccCCCCCcEEeccCCccc
Q 030065 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+|.+++..+..+..+++|++|++++|.++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 66666433344455555555555555555
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=123.44 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=106.5
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 35789999999999997777789999999999999999997777789999999999999999998778899999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+|++|.+++..|..+..+++|+.|++++|.+++..+-
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999977788899999999999999999866553
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=9.8e-18 Score=144.66 Aligned_cols=119 Identities=34% Similarity=0.533 Sum_probs=95.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
++++.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 46677777777777777777777777888888888887777777888888888888888888888888888888888888
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
++|.++|.+|..+..+++|+.|++++|+++|.+|..+|.
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 888888888888888888888888888888888887654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.4e-17 Score=130.47 Aligned_cols=115 Identities=21% Similarity=0.223 Sum_probs=87.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 45666666666666 66666777777777777777777 45666777788888888887777777777778888888888
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
++|++.+.+|..+.++++|+.|++++|++.|.+|+.+
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 8887777788778888888888888888888888754
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=7.4e-17 Score=121.68 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=77.7
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 56777777777777555555666777777777777777555555667777777777777777444445667777777777
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 175 (183)
++|++++..+..+..+++|++|++++|++++..
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 777777443335677777888888888777443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=3.4e-17 Score=132.88 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=90.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCC-hhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
+++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56888888888888777777888888888888888886555 44677788888888888888866677788888888888
Q ss_pred cccCcccCCcccc--ccCCCCCcEEeccCCcccccCCcccc
Q 030065 142 LYNNSFTGPIPNS--LLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 142 L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+++|.+++..|.. +..+++|++|++++|.+++..|..+|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc
Confidence 8888887655544 67777888888888888766665433
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=3.3e-17 Score=135.84 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=86.1
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46788888888887666677777888888888888887666667777888888888888877555555777778888888
Q ss_pred ccCcccC-CccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
++|.+++ ..|..+.++++|++|++++|.+.+.+|...|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 8887774 3456677777777777777775556654433
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=1.7e-16 Score=119.75 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=50.2
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 34445555555444333344444455555555555544333344444455555555555443333344444455555555
Q ss_pred cCcccCCccccccCCCCCcEEeccCCccc
Q 030065 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+|.+++..+..+..+++|+.|++++|+++
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 55444222222344445555555555444
No 22
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=6.8e-17 Score=128.09 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=93.1
Q ss_pred CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065 47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116 (183)
Q Consensus 47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 116 (183)
..+.|.+..+.|... ...++.|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|
T Consensus 14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 345566777777531 13467788888888755555555 77788888888888875555667777888888
Q ss_pred EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
++++|++++..+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|.++ .+|..+|
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 156 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGT
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHh
Confidence 88888877555556777777778888777777555666777777777777777777 3555544
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2.3e-16 Score=120.41 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=74.8
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 34567777777777775444445667777777777777775555556667777777777777764444455666777777
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 777777764444445666677777777777765433
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=8e-17 Score=134.93 Aligned_cols=112 Identities=17% Similarity=0.075 Sum_probs=95.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
..+++|++++|.++...+..|.++++|++|++++|.|++..|..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999666677999999999999999999666667899999999999999998555567889999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
++|++++..+..++++++|++|++++|.+++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 99999854445688899999999999988753
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=8.4e-18 Score=144.36 Aligned_cols=113 Identities=27% Similarity=0.409 Sum_probs=102.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
..++.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 56778999999998 78888889999999999999999 88999999999999999999999 88999999999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
++|.++ .+|..++.+++|+.|+|++|.|+|.+|..+
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999998 889999999999999999999998887654
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=6.7e-17 Score=112.52 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=96.1
Q ss_pred CcEEEEEccCCCCc-ccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLG-GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57889999999998 78888888899999999999999854 6788899999999999999976888777899999999
Q ss_pred cccCcccCC-ccccccCCCCCcEEeccCCcccccCC
Q 030065 142 LYNNSFTGP-IPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 142 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999842 33778899999999999999986544
No 27
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=2.4e-16 Score=116.85 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=100.9
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++++|++++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|++++..|..|..+++|++|
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 34789999999999998888899999999999999999995444457889999999999999998778899999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+|++|.+++..+..+..+++|+.|++++|.+..
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999996555668899999999999999863
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.9e-16 Score=119.34 Aligned_cols=118 Identities=28% Similarity=0.267 Sum_probs=94.5
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 3467888888888887 777778888888999999998886555678888899999999998885555667788889999
Q ss_pred EcccCcccCCccc-cccCCCCCcEEeccCCcccccCCccccc
Q 030065 141 RLYNNSFTGPIPN-SLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 141 ~L~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
+|++|+++ .+|. .+..+++|+.|++++|+++ .+|..+|.
T Consensus 154 ~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp ECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 99999888 5554 4567889999999999888 67776653
No 29
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.1e-16 Score=114.85 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=98.1
Q ss_pred EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChh-hhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065 66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 144 (183)
Q Consensus 66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 144 (183)
+++++++++++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68999999997 88887655 899999999999955443 388999999999999999988889999999999999999
Q ss_pred CcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065 145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
|++++..|..+..+++|++|++++|++++.+|..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 99997667778999999999999999998877643
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=125.77 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=95.9
Q ss_pred CCCCCCCCCCceeeeecCC-----------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCC
Q 030065 43 NWSISYPICSWVGISCGSR-----------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLR 111 (183)
Q Consensus 43 ~w~~~~~~c~w~gv~c~~~-----------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 111 (183)
.|......|.|.|+ |+.. .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 35556677888876 5421 24788899999888865555788888888888888888866667788888
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccc--cccCCCCCcEEeccCCcccccCCccc
Q 030065 112 RLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 112 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
+|++|++++|++++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|+..+.++...
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 8888888888888433344778888888888888888 5665 57778888888888874333444333
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.68 E-value=3.6e-16 Score=111.51 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=92.1
Q ss_pred EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065 66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 145 (183)
Q Consensus 66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 145 (183)
+.+++++++++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46788888888 6787664 68999999999999777888999999999999999999655566789999999999999
Q ss_pred cccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 146 SFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 146 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
++++..+..+..+++|++|++++|.++...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9995444468899999999999999986544
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=6.2e-16 Score=117.97 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=102.8
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 34789999999999996666668899999999999999996666667899999999999999997666778899999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
++++|.+++..|..+..+++|+.|++++|.+.+..|.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 9999999976666688999999999999998877764
No 33
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=7.3e-16 Score=112.12 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=98.5
Q ss_pred EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065 66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 145 (183)
Q Consensus 66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 145 (183)
+.+++++++++ .+|..+. +.++.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999999 7887664 58999999999999 88899999999999999999999766778999999999999999
Q ss_pred cccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065 146 SFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 146 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
.+++..|..+..+++|+.|++++|.++ .+|...|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~ 123 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTT
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhh
Confidence 999766677999999999999999999 56665553
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.6e-16 Score=112.72 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccC--ccccCCCCCcE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQT 139 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~ 139 (183)
.+++++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ +| ..+..+++|++
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence 36788888888888744 667778888888888888886677777678888888888888874 33 66778888888
Q ss_pred EEcccCcccCCccc----cccCCCCCcEEeccCCcccccCCc
Q 030065 140 LRLYNNSFTGPIPN----SLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 140 L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
|++++|.++ .+|. .+..+++|++|++++|.+. .+|.
T Consensus 125 L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 125 LDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 888888888 4444 6777888888888888876 4454
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.6e-16 Score=113.17 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=98.3
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
...++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 34789999999999995545557889999999999999996555567899999999999999996555668899999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
++++|.+++..+..+..+++|+.|++++|.+.+..|.
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 9999999954444578899999999999988776653
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.1e-15 Score=117.12 Aligned_cols=111 Identities=23% Similarity=0.207 Sum_probs=72.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc-CCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN-FHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
+++++|++++|.+++..+..+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 556666666666665556666666667777777665 5544455666667777777777777655556666677777777
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+++|.+++..+..+..+++|+.|++++|++++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 77777764333446667777777777777763
No 37
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=1e-15 Score=109.67 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=91.8
Q ss_pred EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccC
Q 030065 66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 145 (183)
Q Consensus 66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 145 (183)
+.+++++++++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999997 7888765 79999999999999777888999999999999999999544455789999999999999
Q ss_pred cccCCccc-cccCCCCCcEEeccCCccccc
Q 030065 146 SFTGPIPN-SLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 146 ~l~~~~p~-~~~~l~~L~~L~l~~N~l~g~ 174 (183)
+++ .+|. .+..+++|++|++++|.+...
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence 999 4555 488999999999999999854
No 38
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1e-15 Score=114.08 Aligned_cols=115 Identities=23% Similarity=0.180 Sum_probs=100.3
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
...++++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 3478999999999998444455788999999999999999666666789999999999999999 889999999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+|++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999995444568889999999999999986654
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=3.7e-16 Score=127.16 Aligned_cols=118 Identities=19% Similarity=0.076 Sum_probs=93.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999877888999999999999999999777788999999999999999999555566888999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
++|.+++..+..+..+++|+.|++++|+..+.+|...|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 99998843333556666666666666544445554433
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=1.1e-15 Score=128.10 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=73.4
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 45666666666666555555666666666666666666555666666666666666666666444455666666667777
Q ss_pred ccCcccC-CccccccCCCCCcEEeccCCcccccCCc
Q 030065 143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
++|.+++ .+|..+.++++|++|++++|++++..|.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 6666654 4566677777777777777777654443
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.1e-15 Score=123.95 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=93.1
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 36788888888888877677788888888888888888866677788888888888888888877777888888888888
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 888888843334457788888888888888888774
No 42
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.1e-15 Score=111.28 Aligned_cols=106 Identities=17% Similarity=0.285 Sum_probs=47.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccc-cccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK-LSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ 141 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 344444444444444344444444444444444444444344444444444444444444 33 333 344444444455
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+++|.++ .++ .+..+++|+.|++++|++.
T Consensus 166 l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 166 IQFDGVH-DYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTBCCC-CCT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCCc-ChH-HhccCCCCCEEEeeCcccC
Confidence 4444444 222 3444444555555544443
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=125.04 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=70.2
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35666777777776555566666667777777777666555666666666666666666666333334566666666666
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCcccee
Confidence 66666654455555666666666666665543
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=2e-15 Score=126.87 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=80.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 35677777777777666667777777788888877777666666777777888888877777333344577777888888
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
++|.+++..|..+..+++|+.|++++|.+++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 8887776666667777778888888877774
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.2e-15 Score=117.90 Aligned_cols=115 Identities=27% Similarity=0.307 Sum_probs=60.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCC-CChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG-HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
+++++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 345555555555554444445555555555555555543 2444455555555555555555544455555555555555
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|.+++..+..+..+++|+.|++++|++++.+|.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 555555533333445555555555555555554443
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.1e-15 Score=113.93 Aligned_cols=110 Identities=22% Similarity=0.321 Sum_probs=61.4
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 44555555555555333333445555555565555555444444555666666666666665333334556666666666
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
++|.+++..+..+..+++|+.|++++|.++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 666666333334556666666666666666
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1e-15 Score=114.46 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=71.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc-CCCCChhhhcCCCCCcEEEecc-cccccccCccccCCCCCcEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN-FHGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++|++++|.+++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |++++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367778888888775555567777778888888776 6644444677777777777777 77774444566677777777
Q ss_pred EcccCcccCCccccccCCCCCc---EEeccCC-ccc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLE---VFDAIYN-VID 172 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~ 172 (183)
++++|.++ .+|. +..+++|+ .|++++| .++
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchh
Confidence 77777666 3554 44455554 5555555 444
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=1.4e-15 Score=127.52 Aligned_cols=111 Identities=18% Similarity=0.033 Sum_probs=92.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
..+++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46888899999888777778888888999999988888777888888888888888888888777888888888888888
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
++|.+++..|..+.++++|++|++++|.+++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccc
Confidence 8888885446667788888888888888875
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=1.9e-15 Score=126.62 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=104.4
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.++++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999777778999999999999999999777888999999999999999999777899999999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccc-cCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG-TTTKMT 179 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~ip~~~ 179 (183)
++|.+++..|..+.++++|++|++++|.+++ .+|..+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 149 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhH
Confidence 9999986555779999999999999999986 567643
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=2.8e-15 Score=114.77 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=78.9
Q ss_pred CCcEEEEEccCCC-CcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 62 HQRVTALNLSDMG-LGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 62 ~~~l~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
.+++++|++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 3567777777776 664445666777777777777777776556667777777777777777774444556677777777
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
++++|.+++..+..+..+++|+.|++++|.+++..|.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 7777777733333466777777777777777765554
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=132.67 Aligned_cols=124 Identities=20% Similarity=0.168 Sum_probs=72.5
Q ss_pred CCceeeeecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCC-hhhhcCCCCCcEEEecccccccccCc
Q 030065 51 CSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHL-PNELGQLRRLRFIRFGFNKLSGSIPT 129 (183)
Q Consensus 51 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~ 129 (183)
|.|+.|.+ ..+++++|++++|.+++..+..+..+++|++|++++|...+.+ |..+..+++|++|++++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34444444 2256667777777666555566666666666666666444344 44566666666666666666655556
Q ss_pred cccCCCCCcEEEcccCcccCCcccc--ccCCCCCcEEeccCCcccccCC
Q 030065 130 WIGVLSKLQTLRLYNNSFTGPIPNS--LLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 130 ~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~ip 176 (183)
.|.++++|++|+|++|.+++.+|.. +..+++|++|++++|.+++..|
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 6666666666666666665544443 5556666666666666554444
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=120.68 Aligned_cols=115 Identities=22% Similarity=0.169 Sum_probs=100.8
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
...+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 45789999999999997766779999999999999999996666678999999999999999997778899999999999
Q ss_pred EcccCcccCCccccc----cCCCCCcEEeccCCcccccCCc
Q 030065 141 RLYNNSFTGPIPNSL----LNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~----~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+|++|.++ .+|..+ ..+++|+.|++++|+|+ .+|.
T Consensus 142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~ 180 (361)
T 2xot_A 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL 180 (361)
T ss_dssp ECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC-CCCH
T ss_pred ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC-ccCH
Confidence 99999999 577654 57999999999999999 4553
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=3e-16 Score=132.90 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=112.0
Q ss_pred CCCceeeee-cCCCCcEEEEEccCCCCccc-----------------CCccCC--CCCCCcEEEecCccCCCCChhhhcC
Q 030065 50 ICSWVGISC-GSRHQRVTALNLSDMGLGGT-----------------IPLHLG--NLSFLVSLDVAHNNFHGHLPNELGQ 109 (183)
Q Consensus 50 ~c~w~gv~c-~~~~~~l~~L~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~ 109 (183)
.+...|+.- ....+++++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 345556432 12457899999999999985 999999 9999999999999999999999999
Q ss_pred CCCCcEEEecccc-ccc-ccCccccCC------CCCcEEEcccCcccCCccc--cccCCCCCcEEeccCCcccccCC
Q 030065 110 LRRLRFIRFGFNK-LSG-SIPTWIGVL------SKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 110 l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|++|++++|+ ++| .+|..++.+ ++|++|++++|.++ .+|. .+..+++|+.|++++|.++|.+|
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 9999999999998 998 889888776 99999999999999 8998 89999999999999999999998
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=1.9e-15 Score=126.56 Aligned_cols=117 Identities=21% Similarity=0.180 Sum_probs=103.1
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 47899999999999966666789999999999999999966666789999999999999999965556799999999999
Q ss_pred cccCcccC-CccccccCCCCCcEEeccCCcccccCCcc
Q 030065 142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 142 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
+++|.+++ .+|..+..+++|++|++++|++++..|..
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred cccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 99999975 46788899999999999999999765543
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.3e-15 Score=114.76 Aligned_cols=114 Identities=22% Similarity=0.195 Sum_probs=81.4
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 35677777777777755555667777777777777777755556677777777777777777754444677777788888
Q ss_pred cccCcccC-CccccccCCCCCcEEeccCCcccccC
Q 030065 142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 142 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~i 175 (183)
+++|.+++ .+|..+..+++|+.|++++|.+++..
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 88887774 35777777788888888888777543
No 56
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.3e-15 Score=127.39 Aligned_cols=109 Identities=26% Similarity=0.329 Sum_probs=100.4
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|++++ +| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47889999999994 776 999999999999999999 899999999999999999999995 77 89999999999999
Q ss_pred cCcccCCc-cccccCCCCCcEEeccCCcccccCCc
Q 030065 144 NNSFTGPI-PNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 144 ~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+|.+++.. |..+..+++|+.|++++|.+++.+|.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999665 89999999999999999999987664
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.7e-15 Score=107.33 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=99.7
Q ss_pred CcEEEEEccCCCCc-ccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLG-GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67999999999998 78888888999999999999999954 7788999999999999999977888888899999999
Q ss_pred cccCcccCCcc--ccccCCCCCcEEeccCCcccccCC
Q 030065 142 LYNNSFTGPIP--NSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 142 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|.++ .+| ..+..+++|+.|++++|.+++..+
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 9999999 444 678999999999999999996544
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=4.2e-15 Score=113.29 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=102.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999666668999999999999999999666678999999999999999999777788999999999999
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccccc-CCcc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT-TTKM 178 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-ip~~ 178 (183)
++|.+++..+..+..+++|++|++++|.+++. +|..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 99999965555789999999999999999863 5654
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=4.5e-15 Score=114.37 Aligned_cols=116 Identities=28% Similarity=0.310 Sum_probs=87.2
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
..++++|++++|.+++ ++.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 4567777777777763 3332 56777888888888887 6777777888888888888888855556788888888899
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
+++|++++..+..+..+++|+.|++++|+++ .+|..+|.
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 169 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTT
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhc
Confidence 9888888544445677888999999999888 56665553
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=6.7e-15 Score=115.06 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=104.1
Q ss_pred CCCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 47 SYPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 47 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
..+.|.|..+.|... .++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 345678999988642 25799999999999977677899999999999999999977788999999999999
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 9999998 7776654 78999999999998444445788999999999999886
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=120.17 Aligned_cols=128 Identities=18% Similarity=0.123 Sum_probs=96.3
Q ss_pred ceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccc
Q 030065 53 WVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKL 123 (183)
Q Consensus 53 w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 123 (183)
|..+.|... ..+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 556777531 25688899999999877778888899999999999999876677888899999999999998
Q ss_pred ccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 124 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 124 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+...+..+..+++|++|++++|.++...+..+..+++|+.|++++|+..+.+|...|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 854455688888899999998888843333566667777777776554445555443
No 62
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.4e-14 Score=103.58 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=94.3
Q ss_pred EEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEccc
Q 030065 65 VTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 144 (183)
Q Consensus 65 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 144 (183)
.+.+++++++++ .+|..+. ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467899999998 6776544 6899999999999966556678999999999999999955556678999999999999
Q ss_pred CcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 145 NSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 145 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
|.+++..+..+..+++|+.|++++|+++ .+|...|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~ 120 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIF 120 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTT
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHh
Confidence 9999555556789999999999999999 5565554
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=2.4e-15 Score=116.17 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=104.0
Q ss_pred CCcEEEEEccCCCCcc-cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 62 HQRVTALNLSDMGLGG-TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
.+++++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 4789999999999986 578889999999999999999997778889999999999999999997666688999999999
Q ss_pred EcccCcccCCccccccCCC-CCcEEeccCCcccccCC
Q 030065 141 RLYNNSFTGPIPNSLLNLS-KLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~g~ip 176 (183)
++++|.+++..|..+..++ +|+.|++++|.+++..+
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9999999988888888885 99999999999987544
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=4.1e-15 Score=126.25 Aligned_cols=113 Identities=25% Similarity=0.257 Sum_probs=57.5
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 34555666665555433344555555555555555555444555555555555555555555222223555555555555
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 175 (183)
++|.+++..|..+.++++|++|++++|.+++.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 555554333334455555555555555554433
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=124.02 Aligned_cols=118 Identities=24% Similarity=0.283 Sum_probs=81.7
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCC-CCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
+++++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 45666666666666556666666777777777777765 45666667777777777777777766666777777777777
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+++|++++..|..+..+++|+.|++++|.+++.+|...|
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 777777755555567777777777777777777765443
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.2e-14 Score=113.39 Aligned_cols=113 Identities=22% Similarity=0.294 Sum_probs=78.7
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 171 ~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 44555555555555 3444332 56677777777777655667777788888888888887655666777788888888
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
++|.++ .+|..+..+++|++|++++|+++ .+|...|
T Consensus 248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f 283 (330)
T 1xku_A 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDF 283 (330)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSS
T ss_pred CCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChhhc
Confidence 888887 77777777888888888888887 4455444
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=119.79 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCcc-ccCCCC-
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSK- 136 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~- 136 (183)
..+++++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 34667888888888877677777778888888888888775 44566777777777777777777545543 444444
Q ss_pred ---------------------CcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 137 ---------------------LQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 137 ---------------------L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 455555555555 45555556666666666666666 45554
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-14 Score=105.70 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=89.9
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.++ .+ +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 65 l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 467888898888765 33 4678888899999999998876778888889999999999999877778888889999999
Q ss_pred cccCc-ccCCccccccCCCCCcEEeccCCccccc
Q 030065 142 LYNNS-FTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 142 L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
+++|. ++ .+| .+..+++|+.|++++|.+++.
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh
Confidence 99997 55 666 678889999999999988853
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=8.4e-15 Score=121.33 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=105.5
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccc-ccCccccCCCCCcE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQT 139 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~ 139 (183)
..+++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..+++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 45789999999999998777889999999999999999997777779999999999999999985 35678999999999
Q ss_pred EEcccCcccCCcc-ccccCCCCCcEEeccCCcccccCCccc
Q 030065 140 LRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 140 L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
|++++|.+.+.+| ..+.++++|++|++++|.+++.+|..+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 9999998655676 478899999999999999998877653
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.56 E-value=2.6e-14 Score=111.60 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=86.8
Q ss_pred CCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEe
Q 030065 48 YPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF 118 (183)
Q Consensus 48 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (183)
.+.|.|..+.|... .+.++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45678888888631 257899999999999666667899999999999999999777888999999999999
Q ss_pred cccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcc
Q 030065 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVI 171 (183)
Q Consensus 119 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l 171 (183)
++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 999887 5665433 4555566555555533333344444444444444444
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=119.48 Aligned_cols=116 Identities=22% Similarity=0.190 Sum_probs=86.3
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..+..++.+++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 46677788887777765566677777888888888877765566777788888888888877743334577788888888
Q ss_pred cccCcccC-CccccccCCCCCcEEeccCCcccccCCc
Q 030065 142 LYNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 142 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|.+++ .+|..+.++++|++|++++|.+++..|.
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 88888875 4677788888888888888888755443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=8.5e-15 Score=120.45 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=90.6
Q ss_pred CCceeeeecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc-CCCCCcEEEecccccccccCc
Q 030065 51 CSWVGISCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG-QLRRLRFIRFGFNKLSGSIPT 129 (183)
Q Consensus 51 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~ 129 (183)
|.+.++.|. ..++++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |.
T Consensus 109 N~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~ 186 (487)
T 3oja_A 109 NNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (487)
T ss_dssp SCCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred CcCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence 444555554 346788888888888877777778888888888888888877777765 678888888888888744 32
Q ss_pred cccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 130 WIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 130 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
...+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++ +|..
T Consensus 187 -~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp -CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred -cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcc-cchh
Confidence 335778888888888887 455567777888888888888875 4543
No 73
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=118.77 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=80.8
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 46778888888888766677777788888888888887744444567777777777777777766666777777777777
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+++|.+++..|..+..+++|+.|++++|++++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 77777775555566667777777777776663
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=4e-15 Score=115.57 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=55.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCC-----CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc--cCccc--cC
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNL-----SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS--IPTWI--GV 133 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~ 133 (183)
+++++|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+++|++|++++|++.+. +|..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 3445555555555433 3333333 4555555555555544444555555555555555554433 12222 45
Q ss_pred CCCCcEEEcccCcccC--Ccc-ccccCCCCCcEEeccCCcccccCC
Q 030065 134 LSKLQTLRLYNNSFTG--PIP-NSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 134 l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|++|++++|.+++ .++ ..+..+++|+.|++++|.+++.+|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 5555555555555551 111 112355666677777776666554
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=3.7e-14 Score=113.11 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=71.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcc-ccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ 141 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 45666666666666544456666677777777777776555555666777777777777776 44433 46667777777
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+++|.+++..|..+..+++|+.|++++|.+++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 77777765445556667777777777776663
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=9e-15 Score=113.58 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=88.4
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC--Chhhh--cCCCCCcEEEeccccccc--ccC-ccccCCC
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH--LPNEL--GQLRRLRFIRFGFNKLSG--SIP-TWIGVLS 135 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~ 135 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|++++ .++ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 6789999999999877668888899999999999987754 34444 678888888888888872 122 3345678
Q ss_pred CCcEEEcccCcccCCcc-ccccCCCCCcEEeccCCcccccCCcccc
Q 030065 136 KLQTLRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 136 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 88888888888886554 34556788888888888887 7777654
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=1e-14 Score=116.39 Aligned_cols=113 Identities=14% Similarity=0.216 Sum_probs=99.4
Q ss_pred CcEEEEEccCCCCcccCCcc-CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLH-LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++.++++++.++ .+|.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 67899999999998 55654 67899999999999999976677899999999999999999977778899999999999
Q ss_pred cccCcccCCcccc-ccCCCCCcEEeccCCcccccCCc
Q 030065 142 LYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 142 L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|.++ .+|.. +..+++|++|++++|.+++..|.
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 9999999 67765 58899999999999999965443
No 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.6e-14 Score=103.29 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=49.8
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCc--cccCCCCCcEEE
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKLQTLR 141 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ 141 (183)
+++.|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 455555555555432 33445555555555555555222222244555555555555554 3333 444455555555
Q ss_pred cccCcccCCcccc----ccCCCCCcEEeccCCcc
Q 030065 142 LYNNSFTGPIPNS----LLNLSKLEVFDAIYNVI 171 (183)
Q Consensus 142 L~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l 171 (183)
+++|.++ .+|.. +..+++|+.|+++.|.+
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555554 33432 44455555555555543
No 79
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=2e-14 Score=102.44 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=88.1
Q ss_pred CCCCCceeeeecCC---------CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEe
Q 030065 48 YPICSWVGISCGSR---------HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRF 118 (183)
Q Consensus 48 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (183)
.+.|.|+.+.|... ..++++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 6 ~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 6 QCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 35577888888642 257899999999999777888999999999999999999665556789999999999
Q ss_pred cccccccccCccccCCCCCcEEEcccCcccCC
Q 030065 119 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP 150 (183)
Q Consensus 119 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 150 (183)
++|++++..+..+..+++|++|+|++|.++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999965556789999999999999999854
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=5.1e-15 Score=129.09 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=102.1
Q ss_pred CCceeeeec-CCCCcEEEEEccCCCCcc-----------------cCCccCC--CCCCCcEEEecCccCCCCChhhhcCC
Q 030065 51 CSWVGISCG-SRHQRVTALNLSDMGLGG-----------------TIPLHLG--NLSFLVSLDVAHNNFHGHLPNELGQL 110 (183)
Q Consensus 51 c~w~gv~c~-~~~~~l~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l 110 (183)
+...|+... ...++++.|++++|.+++ .+|..+. .+++|++|++++|.+.+.+|..+..+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 445554321 245789999999999997 3898887 99999999999999999999999999
Q ss_pred CCCcEEEecccc-ccc-ccCccccCC-------CCCcEEEcccCcccCCccc--cccCCCCCcEEeccCCcccccCC
Q 030065 111 RRLRFIRFGFNK-LSG-SIPTWIGVL-------SKLQTLRLYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 111 ~~L~~L~l~~n~-l~~-~~p~~~~~l-------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
++|++|++++|+ ++| .+|..++.+ ++|++|++++|.++ .+|. .+.++++|+.|++++|.++ .||
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 999999999998 887 777655544 48888888888888 7888 7888888888888888888 777
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.4e-14 Score=108.26 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=85.7
Q ss_pred CCcEEEEEccCCC-CcccCCccCCCCCCCcEEEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCc-
Q 030065 62 HQRVTALNLSDMG-LGGTIPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ- 138 (183)
Q Consensus 62 ~~~l~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~- 138 (183)
.+++++|++++|. ++...+..+..+++|++|++++ |.+++..+..+..+++|++|++++|++++ +|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 4678888888886 7744445677888888888887 88885555667788888888888888874 665 67777777
Q ss_pred --EEEcccC-cccCCccccccCCCCCc-EEeccCCcccccCCccccc
Q 030065 139 --TLRLYNN-SFTGPIPNSLLNLSKLE-VFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 139 --~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~ip~~~~~ 181 (183)
+|++++| .+++..+..+..+++|+ .|++++|+++ .+|...|.
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~ 177 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence 8888888 77733333467777887 8888888777 66766654
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=113.19 Aligned_cols=117 Identities=23% Similarity=0.225 Sum_probs=98.9
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCc--cccCCCCCc
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKLQ 138 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~ 138 (183)
..+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence 4578999999999999777778999999999999999999554455889999999999999998 5665 788899999
Q ss_pred EEEcccCc-ccCCccccccCCCCCcEEeccCCcccccCCcc
Q 030065 139 TLRLYNNS-FTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 139 ~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
+|++++|. +++..|..+..+++|+.|++++|.+++.+|..
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 99999994 66444567888999999999999998776654
No 83
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=3.6e-14 Score=111.48 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=86.8
Q ss_pred EccCC-CCcccCCccCCCCCCCcEEEecC-ccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCc
Q 030065 69 NLSDM-GLGGTIPLHLGNLSFLVSLDVAH-NNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS 146 (183)
Q Consensus 69 ~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 146 (183)
+++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 677 6888 99999999999996 99997777889999999999999999998888889999999999999999
Q ss_pred ccCCccccccCCCCCcEEeccCCcccc
Q 030065 147 FTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 147 l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
++ .+|..+.....|+.|++++|.+..
T Consensus 92 l~-~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LE-SLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cc-eeCHHHcccCCceEEEeeCCCccC
Confidence 99 566554444449999999999873
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=8.2e-15 Score=101.86 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=92.1
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccc-cCccccCCCCCcE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGS-IPTWIGVLSKLQT 139 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~ 139 (183)
..+++++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 457899999999999954 7788999999999999999977888888899999999999999953 3478899999999
Q ss_pred EEcccCcccCCcc---ccccCCCCCcEEeccC
Q 030065 140 LRLYNNSFTGPIP---NSLLNLSKLEVFDAIY 168 (183)
Q Consensus 140 L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~ 168 (183)
|++++|.+++..+ ..+..+++|+.|++++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999995433 3688899999999864
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=3.3e-14 Score=118.52 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCcc-ccCC---
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVL--- 134 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l--- 134 (183)
..+++++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|.. +..+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 34567777777777776677777777777777777777774 22345666777777777777776534432 3333
Q ss_pred -------------------CCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCccc
Q 030065 135 -------------------SKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 135 -------------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|...
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 45666666666666 56666667777777777777777 566543
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=117.51 Aligned_cols=108 Identities=24% Similarity=0.256 Sum_probs=97.8
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999999666678899999999999999999777889999999999999999999 67776 7999999999
Q ss_pred ccCcccC-CccccccCCCCCcEEeccCCcccc
Q 030065 143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
++|.+++ .+|..++.+++|++|++++|.+++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 9999986 578899999999999999999985
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=2.4e-14 Score=119.31 Aligned_cols=108 Identities=23% Similarity=0.245 Sum_probs=90.6
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57889999999988666678888899999999999998777888888999999999999988 67766 7888999999
Q ss_pred ccCcccC-CccccccCCCCCcEEeccCCcccc
Q 030065 143 YNNSFTG-PIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 143 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
++|.+++ .+|..+.++++|++|++++|.+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9998885 345778888888888888888764
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=4e-14 Score=118.66 Aligned_cols=110 Identities=24% Similarity=0.228 Sum_probs=52.9
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC---ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH---LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
++++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 344444444444433344444444444444444444431 11234444555555555555554444445555555555
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
++++|++++..|..+.++++| .|++++|++++.
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 555555554444455555555 555555555533
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=2.6e-14 Score=121.39 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=75.1
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 56677777777776655666666777777777777776333335666777777777777776444456667777777777
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
++|.+++..|..+.++++|++|++++|.+++..|
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 7777765555566666677777777766665443
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=123.35 Aligned_cols=118 Identities=23% Similarity=0.126 Sum_probs=88.2
Q ss_pred CCCcEEEEEccCCCCcccC-CccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCcc--ccCCCCC
Q 030065 61 RHQRVTALNLSDMGLGGTI-PLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTW--IGVLSKL 137 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L 137 (183)
...++++|++++|...+.+ |..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.. +..+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 3467888888888655555 566778888888888888888777778888888888888888887655554 7778888
Q ss_pred cEEEcccCcccCCcc-ccccCCCCCcEEeccCCcccccCCcc
Q 030065 138 QTLRLYNNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 138 ~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
++|+|++|.+++..+ ..+.++++|+.|++++|.+++..|..
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 888888888875443 45778888888888888887665543
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1e-14 Score=104.23 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=93.1
Q ss_pred CcEEEEEccCCCCcccCCccCCCCC-CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLS-FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++.|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 67899999999999 5554 55554 999999999999954 6788999999999999999954334458999999999
Q ss_pred cccCcccCCccc--cccCCCCCcEEeccCCcccccCCc
Q 030065 142 LYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 142 L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|.++ .+|. .+..+++|+.|++++|.++ .+|.
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence 9999997 7787 7889999999999999998 4554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=112.98 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC--Ch--hhhcCCCCCcEEEecccccccccCc----cccC
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH--LP--NELGQLRRLRFIRFGFNKLSGSIPT----WIGV 133 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~ 133 (183)
.+++++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 35778888888888766666777788888888888876532 11 11234556666666666654 2222 1344
Q ss_pred CCCCcEEEcccCcccCCccccccCC---CCCcEEeccCCcccccCCccc
Q 030065 134 LSKLQTLRLYNNSFTGPIPNSLLNL---SKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 134 l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~g~ip~~~ 179 (183)
+++|++|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 5566666666666654445544444 45666666666665 445443
No 93
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=111.88 Aligned_cols=115 Identities=23% Similarity=0.213 Sum_probs=76.5
Q ss_pred CcEEEEEccCCCCcccCCcc-------------------------CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLH-------------------------LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
+++++|++++|.++...+.. +..+++|++|++++|.++ .+| .+..+++|+.|+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEE
Confidence 56777777777766433323 344555555555556555 344 355666777777
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
+++|++++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|...|
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 275 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTT
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHh
Confidence 7777777666677777777888888888777655666777888888888888887 4454444
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=2.2e-14 Score=112.14 Aligned_cols=84 Identities=25% Similarity=0.301 Sum_probs=52.9
Q ss_pred CCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEecc
Q 030065 88 FLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAI 167 (183)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 167 (183)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 4555555555555444455666666666666666666544455666666666666666666 566666666666666666
Q ss_pred CCccc
Q 030065 168 YNVID 172 (183)
Q Consensus 168 ~N~l~ 172 (183)
+|+++
T Consensus 273 ~N~l~ 277 (332)
T 2ft3_A 273 TNNIT 277 (332)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 66666
No 95
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=2e-13 Score=110.99 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=80.2
Q ss_pred CCcEEEEEccCCCCcccCCcc-------------------------CCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLH-------------------------LGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 116 (183)
.+++++|++++|.++...+.. +..+++|++|++++|.++ .+| .+..+++|+.|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEE
Confidence 357788888888776433323 344556666666666666 333 35667777777
Q ss_pred EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++ .+|...|
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 286 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSS
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHh
Confidence 77777777666777788888888888888887666667778888888888888887 4454444
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=1.4e-13 Score=107.02 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=59.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc-CCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++ ++. ...+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence 4456666666666644444555566666666666666654444442 45566666666666552 222 22355555555
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+++|.++ .+|..+..+++|+.|++++|.++
T Consensus 198 Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence 5555555 34444555555555555555555
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=7.1e-14 Score=117.44 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=109.9
Q ss_pred CCCCCCCCCCCCCCCCC----ceeeeecC----------------CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEec
Q 030065 36 YRSDLTNNWSISYPICS----WVGISCGS----------------RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVA 95 (183)
Q Consensus 36 ~~~~~~~~w~~~~~~c~----w~gv~c~~----------------~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 95 (183)
+.+..+.+|.+...||. |.++.|.. ...+++.++++++.+....+..+..+++|++|+++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~ 83 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence 34445677877665553 65544431 12567899999999984444446779999999999
Q ss_pred CccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcccc-ccCCCCCcEEeccCCccccc
Q 030065 96 HNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS-LLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 96 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~g~ 174 (183)
+|.+++..|..+..+++|++|++++|.+++..|..|+.+++|++|+|++|.++ .+|.. +..+++|++|++++|.+++.
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 99999777779999999999999999999877778899999999999999999 56655 58999999999999999976
Q ss_pred CCc
Q 030065 175 TTK 177 (183)
Q Consensus 175 ip~ 177 (183)
+|.
T Consensus 163 ~~~ 165 (597)
T 3oja_B 163 EDD 165 (597)
T ss_dssp CTT
T ss_pred Chh
Confidence 664
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=9.3e-14 Score=119.34 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCCCCCCC-CCCCCceeeeecCC----------------CCcEEEEEccCCCCcc---
Q 030065 18 NLTTDQSALLAFKARVVDYRSDLTNNWSIS-YPICSWVGISCGSR----------------HQRVTALNLSDMGLGG--- 77 (183)
Q Consensus 18 ~~~~~~~~l~~~k~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~----------------~~~l~~L~l~~~~l~~--- 77 (183)
-...+.+++++++..+.+..+.....|... ...+.|.+..+... ...++.++++.+.+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~ 208 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD 208 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence 345666888888877766666666667433 45567877655420 0122333344443332
Q ss_pred ------cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCc
Q 030065 78 ------TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPI 151 (183)
Q Consensus 78 ------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 151 (183)
..+..+..+..|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+
T Consensus 209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred cccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence 33566788899999999999999 88888889999999999999999 89999999999999999999999 89
Q ss_pred cccccCCCCCcEEeccCCcccccCCcc
Q 030065 152 PNSLLNLSKLEVFDAIYNVIDGTTTKM 178 (183)
Q Consensus 152 p~~~~~l~~L~~L~l~~N~l~g~ip~~ 178 (183)
|..++.+++|++|+|++|.|+ .||..
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChh
Confidence 999999999999999999998 78876
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=7e-14 Score=108.78 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
.+++++|++++|.+++..+..+. .+++|++|++++|.+++ ++. ...+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence 36899999999999977666664 68999999999999994 443 345899999999999999 566668999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCccc-ccCCc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID-GTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~ip~ 177 (183)
++++|.++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 99999999 78988999999999999999998 54443
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=5.2e-13 Score=103.55 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=48.9
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence 3556666666666553 22 35555555555555555552 232 4455555555555555542 222 44444444444
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+++|.++ .++. +..+++|+.|++++|.++
T Consensus 158 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 158 IGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCSSCCC-CCGG-GTTCTTCCEEECCSSCCC
T ss_pred ccCCcCC-CChh-hcCCCCCCEEECCCCccC
Confidence 4444444 2222 334444444444444443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.1e-13 Score=115.89 Aligned_cols=113 Identities=23% Similarity=0.347 Sum_probs=65.0
Q ss_pred CCCCCCCCC-----Cceee-eecCCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEE
Q 030065 43 NWSISYPIC-----SWVGI-SCGSRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFI 116 (183)
Q Consensus 43 ~w~~~~~~c-----~w~gv-~c~~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 116 (183)
+|.....+| .|.|+ .|.. .+++.|++++|++++ +|..+. ++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 354445566 68888 6753 467777777777774 665543 56777777777666 555 345666666
Q ss_pred EecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
++++|++++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 666666663 554 332 55555555555553 443 3344444444444444
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=106.88 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=71.3
Q ss_pred cEEEEEccCCCCcccCCccC--CCCCCCcEEEecCccCCCCCh----hhhcCCCCCcEEEecccccccccCccccCCCCC
Q 030065 64 RVTALNLSDMGLGGTIPLHL--GNLSFLVSLDVAHNNFHGHLP----NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 137 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 137 (183)
++++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 47777777777777766666 666677777777777665433 233456666666666666665555566666666
Q ss_pred cEEEcccCcccC---------------------------Ccccc----ccCCCCCcEEeccCCcccccCCccc
Q 030065 138 QTLRLYNNSFTG---------------------------PIPNS----LLNLSKLEVFDAIYNVIDGTTTKMT 179 (183)
Q Consensus 138 ~~L~L~~n~l~~---------------------------~~p~~----~~~l~~L~~L~l~~N~l~g~ip~~~ 179 (183)
++|+|++|++.+ .+|.. +..+++|++|++++|.+++.+|+.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 666666665432 11211 2345677777777777776655443
No 103
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=6.8e-13 Score=102.89 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=51.0
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.++ .+++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ ++. +..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 44555555555555 2333 4555555555555555552 22 34555555555555555552 222 455555555555
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
++|.+++ ++. +..+++|+.|++++|.++
T Consensus 137 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 137 DLNQITN-ISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence 5555552 222 445555555555555554
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=4.2e-13 Score=95.90 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=76.7
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
.+++.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 57899999999999777888999999999999999999554445789999999999999999544455899999999999
Q ss_pred ccCcccC
Q 030065 143 YNNSFTG 149 (183)
Q Consensus 143 ~~n~l~~ 149 (183)
++|.+..
T Consensus 113 ~~N~~~c 119 (174)
T 2r9u_A 113 YNNPWDC 119 (174)
T ss_dssp CSSCBCT
T ss_pred CCCCccc
Confidence 9999984
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=9.7e-14 Score=114.14 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=98.0
Q ss_pred CCcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
.++++.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 47899999999999988888776 789999999999999954 43 4469999999999999995 56668899999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCccc-ccCCc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID-GTTTK 177 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~ip~ 177 (183)
++++|.++ .+|..+..+++|+.|++++|.+. +.+|.
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred EecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 99999999 58988999999999999999998 55443
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=6.5e-13 Score=102.25 Aligned_cols=102 Identities=31% Similarity=0.391 Sum_probs=49.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|++|++++|++++ + ..+..+++|++|++
T Consensus 90 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSL 163 (291)
T ss_dssp TTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEc
Confidence 334444444444442 22 14444444445555444442 2 234445555555555555542 2 34455555556666
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
++|.+++ ++. +..+++|+.|++++|.++
T Consensus 164 ~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 164 EDNQISD-IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred cCCcccc-chh-hcCCCccCEEECCCCcCC
Confidence 6555553 222 555666666666666655
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.8e-13 Score=100.15 Aligned_cols=104 Identities=29% Similarity=0.280 Sum_probs=84.1
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++ +++ +..+++|++|++++|.+++ +|.. .. ++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 62 l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 4678899999998884 444 8888899999999999884 5543 33 889999999999884 44 588899999999
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
+++|+++ .++ .+..+++|+.|++++|.+++.
T Consensus 135 Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 135 IRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CTTSCCC-BCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCcCC-CCh-HHccCCCCCEEECCCCcCcch
Confidence 9999998 455 678899999999999999865
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=1.3e-12 Score=100.66 Aligned_cols=107 Identities=31% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++ +++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ + ..+..+++|+.|+
T Consensus 67 l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence 3567777777777774 333 6777777777777777763 33 36777777777777777763 3 3466777777777
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|.+++ + ..+..+++|+.|++++|.+++..|
T Consensus 141 l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 141 LGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ccCCcCCc-c-hhhccCCCCCEEEccCCccccchh
Confidence 77777773 3 456677777777777777775433
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.6e-13 Score=100.22 Aligned_cols=105 Identities=24% Similarity=0.288 Sum_probs=82.8
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..++++.|++++|.+++ ++. +.. ++|++|++++|.+++ ++ .+..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus 83 ~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVL 155 (263)
T ss_dssp TCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence 44678889999998884 554 233 788999999998884 44 58888899999999998884 44 57788889999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999988854 5678888899999999988754
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=6.2e-13 Score=104.17 Aligned_cols=109 Identities=25% Similarity=0.354 Sum_probs=85.6
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|++++ + +.+..+++|+.|+
T Consensus 220 ~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEE
Confidence 3678888888888873 444 7778888888888888874 3 457788888888888888874 3 3577788888888
Q ss_pred cccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
+++|.+++..|..+..+++|+.|++++|++++..|
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 88888887777778888888899999988887665
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=6.5e-13 Score=104.07 Aligned_cols=106 Identities=28% Similarity=0.323 Sum_probs=91.8
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..+++++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 45789999999999984 4 458889999999999999994 4 458889999999999999998888889999999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
++++|.+++..| +..+++|+.|++++|.++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999995544 888999999999999986
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=6.5e-13 Score=111.17 Aligned_cols=102 Identities=24% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccccccccc-CccccCCCCCcE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSI-PTWIGVLSKLQT 139 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~ 139 (183)
...+++.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|++|++++|++++.. |..+..+++|+.
T Consensus 461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 3478999999999999 899999999999999999999995 77 8999999999999999999766 999999999999
Q ss_pred EEcccCcccCCccccc----cCCCCCcEEec
Q 030065 140 LRLYNNSFTGPIPNSL----LNLSKLEVFDA 166 (183)
Q Consensus 140 L~L~~n~l~~~~p~~~----~~l~~L~~L~l 166 (183)
|+|++|.+++. |+.. ..+++|+.|++
T Consensus 538 L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQE-EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence 99999999954 4333 34889999874
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=2.8e-15 Score=109.21 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=96.3
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 4689999999999985 77 7888999999999999999 788888788999999999999984 55 578889999999
Q ss_pred cccCcccCCccc--cccCCCCCcEEeccCCcccccCCc
Q 030065 142 LYNNSFTGPIPN--SLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 142 L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+++|.++ .++. .+..+++|++|++++|.+++.+|.
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9999998 4443 688999999999999999877664
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.2e-12 Score=103.14 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=79.8
Q ss_pred CCCCceeeeecCC---------CCcEEEEEccCCCCcccCC-ccCCCCCCCcEEEecCccCCCCChh-hhcCCCCCcE-E
Q 030065 49 PICSWVGISCGSR---------HQRVTALNLSDMGLGGTIP-LHLGNLSFLVSLDVAHNNFHGHLPN-ELGQLRRLRF-I 116 (183)
Q Consensus 49 ~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L 116 (183)
+.|.+..|.|... ..++++|++++|.++ .+| ..|.++++|++|++++|.+.+.+|. .|..+++++. +
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4578888889642 147899999999999 555 4688999999999999998766664 4677888775 5
Q ss_pred EecccccccccCccccCCCCCcEEEcccCcccC
Q 030065 117 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG 149 (183)
Q Consensus 117 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 149 (183)
.+..|+++...|..|..+++|++|++++|++++
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred cccCCcccccCchhhhhcccccccccccccccc
Confidence 566788986667788999999999999998873
No 115
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=1.6e-12 Score=102.08 Aligned_cols=99 Identities=22% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCCceeeeecCC-----------CCcEEEEEccC-CCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEE
Q 030065 50 ICSWVGISCGSR-----------HQRVTALNLSD-MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIR 117 (183)
Q Consensus 50 ~c~w~gv~c~~~-----------~~~l~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (183)
.|.|..+.|... ..+++.|++++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 588888888754 24599999996 999977667899999999999999999988888899999999999
Q ss_pred ecccccccccCccccCCCCCcEEEcccCcccC
Q 030065 118 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG 149 (183)
Q Consensus 118 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 149 (183)
|++|++++..+..+..++ |+.|+|.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999954444555555 9999999999873
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=3.1e-12 Score=107.81 Aligned_cols=102 Identities=30% Similarity=0.398 Sum_probs=47.2
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++. ..+..+++|+.|+|
T Consensus 87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 344555555554442 22 34445555555555555542 2 2344445555555555555422 33444455555555
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
++|.+++..| +..+++|+.|+|++|.++
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 5555543222 444444444444444444
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=6.7e-13 Score=111.05 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=23.7
Q ss_pred cEEEcccCcccCCccccccCCCCCcEEeccCCcccccCCc
Q 030065 138 QTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTK 177 (183)
Q Consensus 138 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 177 (183)
+.|+|++|.++ .+|..+..+++|+.|++++|.+++.+|.
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 55566666655 4565555566666666666666655554
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.37 E-value=3e-12 Score=104.45 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=18.3
Q ss_pred ccCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCccc
Q 030065 131 IGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 131 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
+..+++|+.|++++|.+++..| +..+++|+.|++++|.++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 3444444444444444443332 444444555555555444
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=4e-12 Score=107.10 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=93.4
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..++|+.|++++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 45789999999999984 4 4588999999999999999954 678899999999999999996555 8899999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCccccc
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 174 (183)
+|++|.+++ +| .+..+++|+.|++++|++++.
T Consensus 181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 999999994 54 688999999999999999864
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.34 E-value=4.3e-12 Score=103.50 Aligned_cols=108 Identities=29% Similarity=0.439 Sum_probs=94.5
Q ss_pred CCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEE
Q 030065 61 RHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 140 (183)
Q Consensus 61 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 140 (183)
..++++.|++++|.+++ +++ +..+++|+.|++++|.+++. +. +..+++|+.|++++|++++..| +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 45789999999999995 444 88899999999999999954 43 7899999999999999996654 7789999999
Q ss_pred EcccCcccCCccccccCCCCCcEEeccCCcccccCC
Q 030065 141 RLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 141 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 176 (183)
++++|.+++. ..+..+++|+.|++++|++++.+|
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 9999999953 468899999999999999998877
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.32 E-value=6.9e-12 Score=102.35 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=61.1
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++ +| +..+++|++|++++|.+++ ++ +..+++|++|++++|++++ +| +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 556666666666663 33 5566666666666666664 22 5566666666666666663 33 556666666666
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccC
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTT 175 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 175 (183)
++|.+++ ++ +..+++|+.|++++|...+.+
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred CCCccce-ec--cccCCcCCEEECCCCCccccc
Confidence 6666663 32 556666666666666544444
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=5e-13 Score=106.45 Aligned_cols=114 Identities=19% Similarity=0.161 Sum_probs=81.4
Q ss_pred CcEEEEEccCCCCcc-----cCCccCCCCCCCcEEEecCccCC----CCChhhhcCCCCCcEEEecccccccc----cCc
Q 030065 63 QRVTALNLSDMGLGG-----TIPLHLGNLSFLVSLDVAHNNFH----GHLPNELGQLRRLRFIRFGFNKLSGS----IPT 129 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~ 129 (183)
+++++|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 467777777777762 23335667778888888888875 45677777788888888888887754 455
Q ss_pred ccc--CCCCCcEEEcccCcccC----Cccccc-cCCCCCcEEeccCCcccccCC
Q 030065 130 WIG--VLSKLQTLRLYNNSFTG----PIPNSL-LNLSKLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 130 ~~~--~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~l~~N~l~g~ip 176 (183)
.+. .+++|++|+|++|.+++ .+|..+ .++++|+.|++++|.+++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 553 37788888888888875 367666 557888888888888876553
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1.2e-14 Score=105.90 Aligned_cols=104 Identities=25% Similarity=0.346 Sum_probs=87.3
Q ss_pred EEEEEccCCCCcccCCc------cCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCc
Q 030065 65 VTALNLSDMGLGGTIPL------HLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ 138 (183)
Q Consensus 65 l~~L~l~~~~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 138 (183)
++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 44444444455544444 78889999999999999995 77 8889999999999999999 7888887889999
Q ss_pred EEEcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 139 TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 97 ~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 97 ELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp EEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCC
T ss_pred EEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCc
Confidence 9999999999 466 68889999999999999984
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=8.5e-12 Score=105.40 Aligned_cols=82 Identities=30% Similarity=0.360 Sum_probs=64.2
Q ss_pred CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCccccccCCCCCcEEec
Q 030065 87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDA 166 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 166 (183)
++|+.|++++|.++ .+| ..+++|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 55677777777776 345 34577888888888887 5665 5678899999999998 78888889999999999
Q ss_pred cCCcccccCCc
Q 030065 167 IYNVIDGTTTK 177 (183)
Q Consensus 167 ~~N~l~g~ip~ 177 (183)
++|.+++.+|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 99999877665
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=1.5e-11 Score=96.91 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=90.0
Q ss_pred EEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCCh-hhhcCCCCCcEEEecccccccccC-ccccCCCCCcE-EEc
Q 030065 66 TALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLP-NELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQT-LRL 142 (183)
Q Consensus 66 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~L 142 (183)
++++.++++++ .+|..+. +++++|++++|+|+ .+| ..|..+++|++|++++|++.+.+| ..|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46889999999 8888764 58999999999999 555 468999999999999999876666 46788888775 667
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccccCCcccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTF 180 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 180 (183)
..|+++...|..+..+++|++|++++|.+++ +|...|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~ 124 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHK 124 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTT
T ss_pred cCCcccccCchhhhhcccccccccccccccc-CCchhh
Confidence 7899995556778999999999999999984 454443
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=2.6e-12 Score=108.53 Aligned_cols=120 Identities=24% Similarity=0.346 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCceeeeec------CCCCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcE
Q 030065 42 NNWSISYPICSWVGISCG------SRHQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRF 115 (183)
Q Consensus 42 ~~w~~~~~~c~w~gv~c~------~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 115 (183)
..|....++|.|.|..|. ....+++.|++++++++ .+|..+. ++|++|++++|.++ .+|. .+++|++
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~ 85 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRT 85 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCE
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCE
Confidence 345555566666543211 01123455555555555 4444433 34555555555554 3333 2344455
Q ss_pred EEecccccccccCccc-----------------cCCCCCcEEEcccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 116 IRFGFNKLSGSIPTWI-----------------GVLSKLQTLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 116 L~l~~n~l~~~~p~~~-----------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
|++++|+++ .+|..+ ..+++|+.|++++|+++ .+|.. +++|++|++++|++++
T Consensus 86 L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 86 LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp EEECSCCCS-CCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC
T ss_pred EEcCCCcCC-cCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC
Confidence 555554444 333300 02345555555555555 34432 3667777777777764
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.27 E-value=2.4e-11 Score=99.17 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=55.9
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++ ++ +..+++|++|++++|.+++ +| +..+++|++|++++|++++ ++ +..+++|++|++
T Consensus 85 ~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 85 TNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDC 155 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEEC
Confidence 455666666666553 22 5555666666666666653 33 5555666666666666653 22 455566666666
Q ss_pred ccCcccCCccccccCCCCCcEEeccCCcccc
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
++|...+.+ .+..+++|+.|++++|++++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce
Confidence 666444344 24555666666666666554
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=1.3e-12 Score=101.92 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=54.2
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCC-ChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++.++++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3445555555555533222 34455555555555555433 444455555555555555555544444455555555555
Q ss_pred cccC-cccC-CccccccCCCCCcEEeccCC-ccc
Q 030065 142 LYNN-SFTG-PIPNSLLNLSKLEVFDAIYN-VID 172 (183)
Q Consensus 142 L~~n-~l~~-~~p~~~~~l~~L~~L~l~~N-~l~ 172 (183)
+++| .+++ .++..+..+++|+.|++++| .++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 5555 3443 13333444555555555555 444
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=4.3e-13 Score=104.55 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=45.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCc-cCCCC-ChhhhcCCCCCcEEEeccc-ccccc-cCccccCCC-CC
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHN-NFHGH-LPNELGQLRRLRFIRFGFN-KLSGS-IPTWIGVLS-KL 137 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~L 137 (183)
+++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 34444444444444444444444444444444444 33321 2333334444444444444 44322 233333344 44
Q ss_pred cEEEcccC--ccc-CCccccccCCCCCcEEeccCCc
Q 030065 138 QTLRLYNN--SFT-GPIPNSLLNLSKLEVFDAIYNV 170 (183)
Q Consensus 138 ~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~l~~N~ 170 (183)
++|++++| .++ +.+|..+.++++|+.|++++|.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 44444444 222 1233333444445555555544
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=6.6e-12 Score=102.37 Aligned_cols=84 Identities=25% Similarity=0.361 Sum_probs=43.2
Q ss_pred CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccC--CccccccCC------
Q 030065 87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG--PIPNSLLNL------ 158 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l------ 158 (183)
++|++|++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 356666666666663 4433 467777777777777 5665 36778888888888876 667766665
Q ss_pred -------CCCcEEeccCCcccc--cCCcc
Q 030065 159 -------SKLEVFDAIYNVIDG--TTTKM 178 (183)
Q Consensus 159 -------~~L~~L~l~~N~l~g--~ip~~ 178 (183)
++|+.|++++|+++| .+|.+
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -----------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhh
Confidence 678888888888876 67754
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=7.1e-13 Score=105.54 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=73.3
Q ss_pred CcEEEEEccCCCCc-ccCC---ccCCCCCCCcEEEecCccCCC-----CChhhhcCCCCCcEEEecccccc----cccCc
Q 030065 63 QRVTALNLSDMGLG-GTIP---LHLGNLSFLVSLDVAHNNFHG-----HLPNELGQLRRLRFIRFGFNKLS----GSIPT 129 (183)
Q Consensus 63 ~~l~~L~l~~~~l~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~ 129 (183)
+++++|++++|.++ +.++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45666777766665 2233 234456677777777777762 22335667777778888777775 45666
Q ss_pred cccCCCCCcEEEcccCcccCC----ccccc--cCCCCCcEEeccCCcccc
Q 030065 130 WIGVLSKLQTLRLYNNSFTGP----IPNSL--LNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 130 ~~~~l~~L~~L~L~~n~l~~~----~p~~~--~~l~~L~~L~l~~N~l~g 173 (183)
.+..+++|++|+|++|.+++. +|..+ +.+++|+.|++++|.+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 677777788888888877643 44555 337778888888888776
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=5.6e-12 Score=99.67 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=77.9
Q ss_pred cEEEEEccCCCCcccCCccCCCC-----CCCcEEEecCccCCCCChhhhcC----C-CCCcEEEecccccccccCcc---
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNL-----SFLVSLDVAHNNFHGHLPNELGQ----L-RRLRFIRFGFNKLSGSIPTW--- 130 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~L~l~~n~l~~~~p~~--- 130 (183)
++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.. + ++|++|++++|++++..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 68888888888876555555543 77888888888887666654333 3 78888888888887554433
Q ss_pred -ccC-CCCCcEEEcccCcccCC----ccccccCCC-CCcEEeccCCcccccCC
Q 030065 131 -IGV-LSKLQTLRLYNNSFTGP----IPNSLLNLS-KLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 131 -~~~-l~~L~~L~L~~n~l~~~----~p~~~~~l~-~L~~L~l~~N~l~g~ip 176 (183)
+.. .++|++|+|++|.+++. ++..+...+ +|+.|++++|++++..+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 333 25888888888888742 233344555 88888888888876544
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.17 E-value=6.1e-12 Score=99.48 Aligned_cols=112 Identities=20% Similarity=0.147 Sum_probs=90.7
Q ss_pred CcEEEEEccCCCCcccCC----ccCCCCC-CCcEEEecCccCCCCChhhhcCC-----CCCcEEEecccccccccCcc--
Q 030065 63 QRVTALNLSDMGLGGTIP----LHLGNLS-FLVSLDVAHNNFHGHLPNELGQL-----RRLRFIRFGFNKLSGSIPTW-- 130 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~-- 130 (183)
.++++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 559999999999986555 5677788 89999999999998778777765 99999999999999766553
Q ss_pred --ccCC-CCCcEEEcccCcccCCccccc----cC-CCCCcEEeccCCccccc
Q 030065 131 --IGVL-SKLQTLRLYNNSFTGPIPNSL----LN-LSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 131 --~~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g~ 174 (183)
+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 4444 899999999999985544333 34 36999999999999853
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.17 E-value=1.4e-10 Score=94.57 Aligned_cols=78 Identities=33% Similarity=0.439 Sum_probs=40.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
+++++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|++++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355666666666653 45 36666666666666666653 3432 2345555555555542 33 3444444444444
Q ss_pred ccCccc
Q 030065 143 YNNSFT 148 (183)
Q Consensus 143 ~~n~l~ 148 (183)
++|.++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 444443
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.05 E-value=1.1e-11 Score=100.49 Aligned_cols=87 Identities=23% Similarity=0.179 Sum_probs=58.4
Q ss_pred CCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccccCccccC-----CCCCcEEEcccCcccC----Cccc
Q 030065 87 SFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGSIPTWIGV-----LSKLQTLRLYNNSFTG----PIPN 153 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~----~~p~ 153 (183)
++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 3566666666666543 3444556677888888887776544433321 5678888888888875 5676
Q ss_pred cccCCCCCcEEeccCCcccc
Q 030065 154 SLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 154 ~~~~l~~L~~L~l~~N~l~g 173 (183)
.+..+++|+.|++++|++++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCH
T ss_pred HHHhCCCccEEECCCCCCCH
Confidence 77778888888888888764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.96 E-value=1.3e-11 Score=99.95 Aligned_cols=62 Identities=23% Similarity=0.150 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCCcccC-----CccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccc
Q 030065 63 QRVTALNLSDMGLGGTI-----PLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLS 124 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 124 (183)
+++++|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.++
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 45556666666554321 11112344555555555555532 3344444555555555555544
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.91 E-value=4.9e-11 Score=90.69 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=44.2
Q ss_pred CCCCCcEEEeccccccc--ccCccccCCCCCcEEEcccCcccCCccccccCCC--CCcEEeccCCcccccCC
Q 030065 109 QLRRLRFIRFGFNKLSG--SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLLNLS--KLEVFDAIYNVIDGTTT 176 (183)
Q Consensus 109 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~N~l~g~ip 176 (183)
.+++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++ + ..+..+. +|+.|++++|.+++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccC
Confidence 46777777777777775 344555667777777777777774 2 2233333 77777777777777665
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.90 E-value=2.9e-10 Score=90.48 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccc----cCccccCCCCCcEEEcccCcccC----Cccc
Q 030065 86 LSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTG----PIPN 153 (183)
Q Consensus 86 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~ 153 (183)
.++|+.|++++|.++.. ++..+...++|++|++++|.+++. ++..+...++|++|+|++|.++. .++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34566666666665421 223334556666666666666532 23344555667777777766653 1223
Q ss_pred cccCCCCCcEEeccCCccc
Q 030065 154 SLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 154 ~~~~l~~L~~L~l~~N~l~ 172 (183)
.+...++|+.|++++|.|+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 3344566777777777665
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=9.9e-10 Score=87.39 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=83.4
Q ss_pred CcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCccCCCCChhhh-----cCCCCCcEEEecccccccc----cCcccc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHNNFHGHLPNEL-----GQLRRLRFIRFGFNKLSGS----IPTWIG 132 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~ 132 (183)
.++++|++++|.++......+. .+++|+.|++++|.++......+ ...+.|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5799999999988743333332 35678999999999875433333 2467899999999999742 344557
Q ss_pred CCCCCcEEEcccCcccC----CccccccCCCCCcEEeccCCcccc
Q 030065 133 VLSKLQTLRLYNNSFTG----PIPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 133 ~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
..++|++|+|++|.++. .++..+...++|+.|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 78999999999999874 234556777899999999999874
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.72 E-value=9.2e-09 Score=78.16 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=64.3
Q ss_pred CCCCCcEEEecCccCCC--CChhhhcCCCCCcEEEecccccccccCccccCCC--CCcEEEcccCcccCCccc-------
Q 030065 85 NLSFLVSLDVAHNNFHG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS--KLQTLRLYNNSFTGPIPN------- 153 (183)
Q Consensus 85 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~------- 153 (183)
.+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|.+|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47799999999999996 4456677899999999999999854 2333344 999999999999977763
Q ss_pred cccCCCCCcEEe
Q 030065 154 SLLNLSKLEVFD 165 (183)
Q Consensus 154 ~~~~l~~L~~L~ 165 (183)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 357899999987
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.65 E-value=3.1e-09 Score=88.56 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCCCCCCcEEEecCc--cCCCCChhhhc-CCCCCcEEEeccccccc-ccCccccCCCCCcEEEcccCcccCC-ccccccC
Q 030065 83 LGNLSFLVSLDVAHN--NFHGHLPNELG-QLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTLRLYNNSFTGP-IPNSLLN 157 (183)
Q Consensus 83 l~~l~~L~~L~l~~n--~l~~~~p~~~~-~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~ 157 (183)
+..+++|++|+++.+ .+++..+..+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++. ++..+..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 344666777777532 34444444443 37788888888888875 3445567788999999999987643 3444567
Q ss_pred CCCCcEEeccCCccccc
Q 030065 158 LSKLEVFDAIYNVIDGT 174 (183)
Q Consensus 158 l~~L~~L~l~~N~l~g~ 174 (183)
+++|+.|++++|++++.
T Consensus 512 l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSCCEEEEESCBCCTT
T ss_pred cCccCeeECcCCcCCHH
Confidence 88999999999988754
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=4e-09 Score=75.87 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=86.1
Q ss_pred CCcEEEEEccCC-CCcc----cCCccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEecccccccc----cC
Q 030065 62 HQRVTALNLSDM-GLGG----TIPLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IP 128 (183)
Q Consensus 62 ~~~l~~L~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p 128 (183)
.+.+++|++++| .+.. .+...+...++|++|++++|.+... +...+...+.|++|++++|.++.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 477999999999 8764 2444566678999999999999743 233455568999999999999853 34
Q ss_pred ccccCCCCCcEEEc--ccCcccCC----ccccccCCCCCcEEeccCCccc
Q 030065 129 TWIGVLSKLQTLRL--YNNSFTGP----IPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 129 ~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
..+...++|++|+| ++|.+... +...+...++|+.|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56777889999999 88999742 3344566789999999999885
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.3e-07 Score=73.60 Aligned_cols=92 Identities=24% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCc-EEEcccCcccCCccccccCCCCCcEEe
Q 030065 87 SFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ-TLRLYNNSFTGPIPNSLLNLSKLEVFD 165 (183)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~ 165 (183)
++|+.+++++|.++...+..|..+++|+.+++++| ++..-+..|.++.+|+ .+++.. .++..-+..|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 44555555555554222233444555555555544 3322233444555555 555544 33311123344455555555
Q ss_pred ccCCcccccCCccccc
Q 030065 166 AIYNVIDGTTTKMTFI 181 (183)
Q Consensus 166 l~~N~l~g~ip~~~~~ 181 (183)
+++|+++ .|+..+|.
T Consensus 304 l~~n~i~-~I~~~aF~ 318 (329)
T 3sb4_A 304 ATGDKIT-TLGDELFG 318 (329)
T ss_dssp ECSSCCC-EECTTTTC
T ss_pred eCCCccC-ccchhhhc
Confidence 5555554 44444443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=1.4e-07 Score=73.44 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=83.1
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCc-EEEecccccccccCccccCCCCCcEEE
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLR-FIRFGFNKLSGSIPTWIGVLSKLQTLR 141 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~ 141 (183)
.+++.+++++|+++..-+..|..+.+|+.+++.+| ++..-+..|..+++|+ .+++++ .++..-+..|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 57899999999998544556888999999999998 7745556788999999 999988 67645568899999999999
Q ss_pred cccCcccCCccccccCCCCCcEEec
Q 030065 142 LYNNSFTGPIPNSLLNLSKLEVFDA 166 (183)
Q Consensus 142 L~~n~l~~~~p~~~~~l~~L~~L~l 166 (183)
+..|.++..-+..|.++++|+.+..
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9999998333446888999988763
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.44 E-value=1.4e-07 Score=78.57 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=39.6
Q ss_pred CcEEEEEccCCCCccc----CCccCCCCCCCcEEEecCccCCC----CChhhhcCCCCCcEEEecccccccccCccccCC
Q 030065 63 QRVTALNLSDMGLGGT----IPLHLGNLSFLVSLDVAHNNFHG----HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVL 134 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 134 (183)
+++++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ +|..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 5566777777665433 22222345566666666666652 222333445666666666665542 33333333
Q ss_pred CCCcEEEc
Q 030065 135 SKLQTLRL 142 (183)
Q Consensus 135 ~~L~~L~L 142 (183)
++|+.|++
T Consensus 243 ~~L~~L~l 250 (592)
T 3ogk_B 243 ANLEEFCG 250 (592)
T ss_dssp TTCCEEEE
T ss_pred hHHHhhcc
Confidence 33333333
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.33 E-value=3.6e-08 Score=82.10 Aligned_cols=88 Identities=10% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCCCCCcEEEecCccCCCCChhhhcC-CCCCcEEEecccccccccCccc-cCCCCCcEEEcccCcccCCccc-cccCCCC
Q 030065 84 GNLSFLVSLDVAHNNFHGHLPNELGQ-LRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYNNSFTGPIPN-SLLNLSK 160 (183)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~ 160 (183)
..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++.... .+..+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455666666655 444444444444 6778888888777765444333 4577788888888877533222 3345778
Q ss_pred CcEEeccCCccc
Q 030065 161 LEVFDAIYNVID 172 (183)
Q Consensus 161 L~~L~l~~N~l~ 172 (183)
|+.|++++|.++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 888888888764
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.25 E-value=1.5e-07 Score=78.36 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=68.6
Q ss_pred CcEEEEEccCCCCcccCCccCC-CCCCCcEEEecCc-cCCCC-ChhhhcCCCCCcEEEecccccccccCccc----cCCC
Q 030065 63 QRVTALNLSDMGLGGTIPLHLG-NLSFLVSLDVAHN-NFHGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWI----GVLS 135 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~ 135 (183)
+++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5678888888877765555554 4678888888877 44422 33344467888888888888765443333 3566
Q ss_pred CCcEEEcccCc--ccC-CccccccCCCCCcEEeccCC
Q 030065 136 KLQTLRLYNNS--FTG-PIPNSLLNLSKLEVFDAIYN 169 (183)
Q Consensus 136 ~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~l~~N 169 (183)
+|+.|++++|. ++. .++..+.++++|+.|++++|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 78888888776 221 11122244677888888776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=2e-07 Score=73.84 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhc--CCCCCcEEEecc--cccccc-----cCccc-
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELG--QLRRLRFIRFGF--NKLSGS-----IPTWI- 131 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~- 131 (183)
.++++.|.++++.-. .++. + .+++|++|++..+.++......+. .+++|+.|+|+. |...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 367777887766311 2222 2 255666666666665433222332 456666666542 111110 01111
Q ss_pred -cCCCCCcEEEcccCcccCCccccc---cCCCCCcEEeccCCcccc
Q 030065 132 -GVLSKLQTLRLYNNSFTGPIPNSL---LNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 132 -~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~g 173 (183)
..+++|++|+|.+|.+....+..+ ..+++|++|+++.|.+++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 134566666666555543222211 134555555555555543
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=6.9e-07 Score=64.00 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred CCccCCCCCCCcEEEecCc-cCCCC----ChhhhcCCCCCcEEEecccccccc----cCccccCCCCCcEEEcccCcccC
Q 030065 79 IPLHLGNLSFLVSLDVAHN-NFHGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTG 149 (183)
Q Consensus 79 ~~~~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~ 149 (183)
+...+...++|++|++++| .+... +...+...++|++|++++|.++.. +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3444666789999999999 88732 334566778999999999999743 23445566899999999999984
Q ss_pred C----ccccccCCCCCcEEec--cCCcccc
Q 030065 150 P----IPNSLLNLSKLEVFDA--IYNVIDG 173 (183)
Q Consensus 150 ~----~p~~~~~l~~L~~L~l--~~N~l~g 173 (183)
. +...+...++|+.|++ ++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2 4456777889999999 8899863
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.2e-06 Score=62.30 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=54.2
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCcc-CCCCChhhhcCC----CCCcEEEeccc-ccccccCccccCCCC
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNN-FHGHLPNELGQL----RRLRFIRFGFN-KLSGSIPTWIGVLSK 136 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n-~l~~~~p~~~~~l~~ 136 (183)
-.++.|+++++.++..--..+..+++|++|+++++. ++...-..+..+ ++|++|+++++ +++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457888888877765444556677778888887774 554333344443 35777777776 366544445566777
Q ss_pred CcEEEcccCc
Q 030065 137 LQTLRLYNNS 146 (183)
Q Consensus 137 L~~L~L~~n~ 146 (183)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2.6e-06 Score=60.56 Aligned_cols=95 Identities=9% Similarity=0.037 Sum_probs=70.1
Q ss_pred cCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccc-cccccCccccCC----CCCcEEEcccCc-ccCCc
Q 030065 78 TIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNK-LSGSIPTWIGVL----SKLQTLRLYNNS-FTGPI 151 (183)
Q Consensus 78 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~ 151 (183)
.+|.....-..|+.||++++.++..--..+..+++|+.|+|+++. +++..-..+..+ ++|++|+|+++. ++..-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 344433223479999999999986666678899999999999985 775444455554 479999999984 77422
Q ss_pred cccccCCCCCcEEeccCCc-cc
Q 030065 152 PNSLLNLSKLEVFDAIYNV-ID 172 (183)
Q Consensus 152 p~~~~~l~~L~~L~l~~N~-l~ 172 (183)
-..+.++++|+.|+++++. ++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 2346789999999999984 44
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.05 E-value=3.9e-06 Score=66.41 Aligned_cols=112 Identities=13% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCcEEEEEccCCCCcccCCccCC--CCCCCcEEEecC--ccCCCC-----Chhhh--cCCCCCcEEEecccccccccCcc
Q 030065 62 HQRVTALNLSDMGLGGTIPLHLG--NLSFLVSLDVAH--NNFHGH-----LPNEL--GQLRRLRFIRFGFNKLSGSIPTW 130 (183)
Q Consensus 62 ~~~l~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~ 130 (183)
.++++.|++..+++.......+. .+++|+.|+|+. |...+. +...+ ..+++|++|++.+|.+++..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 36788899888877643333333 678899998853 221111 11122 24789999999998887543333
Q ss_pred c---cCCCCCcEEEcccCcccCC----ccccccCCCCCcEEeccCCcccc
Q 030065 131 I---GVLSKLQTLRLYNNSFTGP----IPNSLLNLSKLEVFDAIYNVIDG 173 (183)
Q Consensus 131 ~---~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g 173 (183)
+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+++.|.++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3 2478899999999988742 33344567889999999998763
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.04 E-value=2e-05 Score=63.14 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=71.7
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCC-----CCChhhhcCCCCCcEEEecccccccccCccccCCCCCc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFH-----GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ 138 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 138 (183)
.++.+.+. ++++..-...|.++++|+.+.+.+|.+. ...+..|..+++|+.+.+.. .++..-...|.++.+|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 34555553 3344233455667778888888777654 23345677788888888874 46533446777888888
Q ss_pred EEEcccCcccCCccccccCCCCCcEEeccCCcccccCCccccc
Q 030065 139 TLRLYNNSFTGPIPNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
.+.+..| ++..-...|.++ +|+.+++.+|.+. .++...|.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~ 366 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWY 366 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-cccccccc
Confidence 8888655 542223456677 8888888888776 45555553
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.79 E-value=9.2e-05 Score=59.27 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=22.9
Q ss_pred cccCCCCCcEEEcccCcccC----Cc-cccccCCCCCcEEeccCCcccccCCccccc
Q 030065 130 WIGVLSKLQTLRLYNNSFTG----PI-PNSLLNLSKLEVFDAIYNVIDGTTTKMTFI 181 (183)
Q Consensus 130 ~~~~l~~L~~L~L~~n~l~~----~~-p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 181 (183)
.|.++++|+.+++.+|.+.. .+ +..|..+++|+.+++. ++++ .|+..+|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~ 320 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLG 320 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhc
Confidence 44445555555555544320 11 2234455555555555 2333 45555543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.39 E-value=0.00042 Score=46.59 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=43.5
Q ss_pred EEEccCCCCc-ccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccc
Q 030065 67 ALNLSDMGLG-GTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLS 124 (183)
Q Consensus 67 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 124 (183)
.++.++++++ ..+|..+. .++++|+|++|.|+..-+..|..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6788888886 35665543 37899999999999544556778899999999999775
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00056 Score=45.97 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.5
Q ss_pred cEEEecCccCC-CCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCccc
Q 030065 90 VSLDVAHNNFH-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT 148 (183)
Q Consensus 90 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 148 (183)
..++.+++.++ ..+|..+ .++|+.|+|++|+|+..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 3556543 346888888888888433455677888888888888775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.10 E-value=0.0022 Score=50.32 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=67.5
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.++.+.+..+ ++..-...+.....|+.+.+..+ ++......|..+++|+.+.+.++.++..-...|.++.+|+.+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3445555433 33222334555666777776543 332333456777888888888777763335677788888888886
Q ss_pred cCcccCCcc-ccccCCCCCcEEeccCCcccccCCcccccC
Q 030065 144 NNSFTGPIP-NSLLNLSKLEVFDAIYNVIDGTTTKMTFID 182 (183)
Q Consensus 144 ~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 182 (183)
.+ ++ .++ ..|.++.+|+.+.+..+ ++ .|...+|.+
T Consensus 319 ~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~ 354 (379)
T 4h09_A 319 TA-LK-TIQVYAFKNCKALSTISYPKS-IT-LIESGAFEG 354 (379)
T ss_dssp TT-CC-EECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTT
T ss_pred cc-cc-EEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhC
Confidence 54 44 343 34667778887777544 43 455555543
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.04 E-value=0.00026 Score=51.16 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=77.4
Q ss_pred CCcEEEEEccCC-CCcc----cCCccCCCCCCCcEEEecCccCCCC----ChhhhcCCCCCcEEEeccccccccc----C
Q 030065 62 HQRVTALNLSDM-GLGG----TIPLHLGNLSFLVSLDVAHNNFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----P 128 (183)
Q Consensus 62 ~~~l~~L~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p 128 (183)
...++.|+++++ .+.. .+-..+..-++|+.|+|++|.+... +-..+..-+.|++|+|+.|.++... -
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467999999985 7653 2344456667899999999999733 2233444578999999999998532 2
Q ss_pred ccccCCCCCcEEEcccCc---ccC----CccccccCCCCCcEEeccCCccc
Q 030065 129 TWIGVLSKLQTLRLYNNS---FTG----PIPNSLLNLSKLEVFDAIYNVID 172 (183)
Q Consensus 129 ~~~~~l~~L~~L~L~~n~---l~~----~~p~~~~~l~~L~~L~l~~N~l~ 172 (183)
..+..-+.|+.|+|++|. +.. .+...+..-+.|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 445666789999998653 331 12334556678999999887654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.78 E-value=0.0092 Score=47.15 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=55.1
Q ss_pred ccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc-ccccCCC
Q 030065 81 LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLS 159 (183)
Q Consensus 81 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~ 159 (183)
..+.++..|+.+.+.. .++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++ .++ ..|.+++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCC
Confidence 3355566677777653 344233345667788888888754 44233456777888888888654 54 343 4567788
Q ss_pred CCcEEeccCCcc
Q 030065 160 KLEVFDAIYNVI 171 (183)
Q Consensus 160 ~L~~L~l~~N~l 171 (183)
+|+.+++.++..
T Consensus 358 ~L~~i~~~~~~~ 369 (394)
T 4gt6_A 358 ALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEESSCHH
T ss_pred CCCEEEECCcee
Confidence 888888877643
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.66 E-value=0.013 Score=45.83 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=68.8
Q ss_pred ccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc-ccccCCC
Q 030065 81 LHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLS 159 (183)
Q Consensus 81 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~ 159 (183)
..+.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+.++ .++ ..|.++.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCC
Confidence 34556677888877665 44234456777888888888654 44233457888999999999988887 454 4577889
Q ss_pred CCcEEeccCCcccccCCcccccC
Q 030065 160 KLEVFDAIYNVIDGTTTKMTFID 182 (183)
Q Consensus 160 ~L~~L~l~~N~l~g~ip~~~~~~ 182 (183)
+|+.+.+..+ ++ .|+..+|.+
T Consensus 311 ~L~~i~lp~~-l~-~I~~~aF~~ 331 (379)
T 4h09_A 311 KLSSVTLPTA-LK-TIQVYAFKN 331 (379)
T ss_dssp TCCEEECCTT-CC-EECTTTTTT
T ss_pred CCCEEEcCcc-cc-EEHHHHhhC
Confidence 9999999754 44 677777754
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.62 E-value=0.001 Score=48.02 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=63.6
Q ss_pred CCCCCCCcEEEecCc-cCCCC----ChhhhcCCCCCcEEEeccccccccc----CccccCCCCCcEEEcccCcccCC---
Q 030065 83 LGNLSFLVSLDVAHN-NFHGH----LPNELGQLRRLRFIRFGFNKLSGSI----PTWIGVLSKLQTLRLYNNSFTGP--- 150 (183)
Q Consensus 83 l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~--- 150 (183)
+..-++|+.|++++| .|... +-..+..-+.|+.|+|++|++.... ...+..-+.|++|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445668999999986 77522 2345566789999999999998543 23445568999999999999832
Q ss_pred -ccccccCCCCCcEEeccCC
Q 030065 151 -IPNSLLNLSKLEVFDAIYN 169 (183)
Q Consensus 151 -~p~~~~~l~~L~~L~l~~N 169 (183)
+-..+..-+.|+.|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2234556678999999865
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.46 E-value=0.0087 Score=47.31 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=65.5
Q ss_pred cEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 64 RVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 64 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
.++.+.+. +.++..-...|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+++.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 45555554 3344233345777899999999865 55344567889999999999765 553345789999999999999
Q ss_pred cCcccCCccccccCCCCCcEEeccCCcc
Q 030065 144 NNSFTGPIPNSLLNLSKLEVFDAIYNVI 171 (183)
Q Consensus 144 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l 171 (183)
++... -..+....+|+.+.+..|.+
T Consensus 366 ~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 366 GSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp SCHHH---HHTCBCCCCC----------
T ss_pred Cceee---hhhhhccCCCCEEEeCCCCE
Confidence 88654 13566778888888776654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.40 E-value=0.021 Score=45.12 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=42.5
Q ss_pred CCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEcccCcccCCcc-ccccCCCCCcE
Q 030065 85 NLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP-NSLLNLSKLEV 163 (183)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~ 163 (183)
...+|+.+.+..+ ++..-...|..+++|+.+++..+ ++..-...|.++.+|+.+++..+ ++ .++ ..|.++++|+.
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKK 370 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCE
Confidence 3445555555433 33222334555666666666543 44222455666666776666555 43 232 34566667776
Q ss_pred EeccCC
Q 030065 164 FDAIYN 169 (183)
Q Consensus 164 L~l~~N 169 (183)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 666543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.30 E-value=0.0086 Score=47.32 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=69.3
Q ss_pred CcEEEEEccCCCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEecccccccccCccccCCCCCcEEEc
Q 030065 63 QRVTALNLSDMGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 142 (183)
Q Consensus 63 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 142 (183)
..++.+.+..+ ++..-...|..+.+|+.+++..+ ++..-...|..+++|+.+.+..+ ++..-...|.++.+|+.+++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 45666676643 55333455778899999999754 66344567889999999999877 66344578999999999999
Q ss_pred ccCcccCCccccccCCCCCcEE
Q 030065 143 YNNSFTGPIPNSLLNLSKLEVF 164 (183)
Q Consensus 143 ~~n~l~~~~p~~~~~l~~L~~L 164 (183)
..+ ++ .+...+.++++|+.+
T Consensus 374 p~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCC-CE-EhhheecCCCCCcEE
Confidence 765 33 344567777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.88 E-value=24 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=14.5
Q ss_pred hcCCCCCcEEEecccccccccCccccCCCCCcEEEcc
Q 030065 107 LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 143 (183)
Q Consensus 107 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 143 (183)
|..+++|+.+.+..+ ++..-...|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444444444432 111222344444444444443
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=33.75 E-value=9.5 Score=16.38 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=7.5
Q ss_pred CCCCCceeee
Q 030065 48 YPICSWVGIS 57 (183)
Q Consensus 48 ~~~c~w~gv~ 57 (183)
+..|+|.|+.
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 4579998875
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.71 E-value=1.2e+02 Score=18.41 Aligned_cols=48 Identities=8% Similarity=-0.054 Sum_probs=31.5
Q ss_pred CCCcccCCccCCCCCCCcEEEecCccCCCCChhhhcCCCCCcEEEeccc
Q 030065 73 MGLGGTIPLHLGNLSFLVSLDVAHNNFHGHLPNELGQLRRLRFIRFGFN 121 (183)
Q Consensus 73 ~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (183)
.+++..-...|.++.+|+.+.+-.+ ++..-...|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3444333445677788888888765 33244567778888888887654
Done!