Query 030066
Match_columns 183
No_of_seqs 184 out of 1085
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 2.3E-28 4.9E-33 199.8 10.0 84 90-175 1-84 (167)
2 KOG2332 Ferritin [Inorganic io 99.9 9.2E-28 2E-32 198.1 2.9 92 81-172 3-95 (178)
3 cd00904 Ferritin Ferritin iron 99.9 2.7E-26 5.8E-31 184.0 9.9 84 92-175 1-85 (160)
4 PRK10304 ferritin; Provisional 99.9 5E-26 1.1E-30 184.8 10.0 84 90-175 1-84 (165)
5 cd01056 Euk_Ferritin eukaryoti 99.9 1.6E-24 3.5E-29 173.2 10.3 84 92-175 1-85 (161)
6 COG1528 Ftn Ferritin-like prot 99.9 3.6E-24 7.7E-29 175.2 9.7 84 90-175 1-84 (167)
7 cd01055 Nonheme_Ferritin nonhe 99.8 1.3E-20 2.8E-25 148.2 9.9 82 92-175 1-82 (156)
8 PRK10635 bacterioferritin; Pro 99.6 1E-15 2.2E-20 123.9 9.5 79 90-170 2-80 (158)
9 TIGR00754 bfr bacterioferritin 99.6 1.8E-15 3.9E-20 120.2 9.5 77 92-170 4-80 (157)
10 cd00907 Bacterioferritin Bacte 99.5 9.1E-14 2E-18 108.4 9.8 77 92-170 3-79 (153)
11 cd01041 Rubrerythrin Rubreryth 99.5 1E-13 2.3E-18 107.5 7.5 74 95-175 2-75 (134)
12 PF00210 Ferritin: Ferritin-li 99.4 2E-13 4.2E-18 102.8 6.1 72 96-169 1-77 (142)
13 cd01052 DPSL DPS-like protein, 99.3 3E-11 6.5E-16 93.7 9.1 69 93-163 5-73 (148)
14 cd01046 Rubrerythrin_like rubr 99.1 3.3E-10 7.1E-15 87.6 7.7 56 95-152 2-57 (123)
15 COG2193 Bfr Bacterioferritin ( 99.0 2.2E-09 4.9E-14 87.1 9.2 74 91-166 3-76 (157)
16 PRK13456 DNA protection protei 98.2 8.7E-06 1.9E-10 68.3 8.8 70 93-164 19-88 (186)
17 cd00657 Ferritin_like Ferritin 98.1 2E-05 4.3E-10 55.8 7.9 60 98-162 2-61 (130)
18 cd07908 Mn_catalase_like Manga 97.5 0.00059 1.3E-08 53.8 8.4 68 92-162 11-81 (154)
19 cd01045 Ferritin_like_AB Uncha 97.3 0.0014 3.1E-08 48.5 7.2 54 98-156 2-55 (139)
20 PF02915 Rubrerythrin: Rubrery 97.2 0.002 4.3E-08 47.9 7.4 62 97-161 1-62 (137)
21 cd01043 DPS DPS protein, ferri 96.9 0.0026 5.6E-08 49.1 6.0 63 98-162 2-64 (139)
22 cd01044 Ferritin_CCC1_N Ferrit 96.5 0.016 3.5E-07 44.4 7.7 58 98-160 2-59 (125)
23 COG1633 Uncharacterized conser 95.8 0.059 1.3E-06 44.6 8.1 63 92-159 22-84 (176)
24 PF09537 DUF2383: Domain of un 95.0 0.24 5.2E-06 36.8 8.6 63 94-161 1-63 (111)
25 PRK09448 DNA starvation/statio 94.8 0.21 4.5E-06 40.6 8.3 66 93-160 21-86 (162)
26 COG1592 Rubrerythrin [Energy p 94.5 0.16 3.5E-06 42.0 7.1 60 95-156 5-64 (166)
27 cd01051 Mn_catalase Manganese 94.1 0.2 4.4E-06 40.5 6.8 61 93-157 19-82 (156)
28 TIGR02284 conserved hypothetic 91.0 1.1 2.3E-05 35.5 6.9 60 96-160 2-61 (139)
29 cd01042 DMQH Demethoxyubiquino 90.6 1 2.2E-05 37.1 6.6 52 105-161 11-62 (165)
30 cd01046 Rubrerythrin_like rubr 88.4 2.8 6E-05 32.1 7.3 59 93-153 62-120 (123)
31 cd01041 Rubrerythrin Rubreryth 88.0 7.4 0.00016 29.8 9.5 59 93-153 72-131 (134)
32 COG2406 Protein distantly rela 84.7 9.3 0.0002 31.7 8.7 65 93-159 16-80 (172)
33 PF02915 Rubrerythrin: Rubrery 83.8 8.9 0.00019 28.0 7.8 52 94-150 84-135 (137)
34 cd07910 MiaE MiaE tRNA-modifyi 83.7 11 0.00023 31.8 8.9 68 94-167 18-85 (180)
35 PF03232 COQ7: Ubiquinone bios 83.0 4.6 0.0001 33.4 6.4 54 104-161 12-65 (172)
36 cd01045 Ferritin_like_AB Uncha 82.9 7.4 0.00016 28.4 7.0 56 91-151 83-138 (139)
37 cd00657 Ferritin_like Ferritin 81.4 13 0.00028 25.6 7.5 54 93-151 76-129 (130)
38 cd07908 Mn_catalase_like Manga 80.8 9.7 0.00021 29.7 7.3 56 91-151 98-153 (154)
39 cd01055 Nonheme_Ferritin nonhe 80.7 11 0.00023 29.3 7.5 59 93-153 79-137 (156)
40 COG2941 CAT5 Ubiquinone biosyn 79.9 10 0.00022 32.5 7.5 78 79-161 22-103 (204)
41 PF13668 Ferritin_2: Ferritin- 77.5 22 0.00047 27.0 8.2 69 97-171 4-75 (137)
42 PF12902 Ferritin-like: Ferrit 77.4 17 0.00036 31.2 8.3 64 99-164 1-64 (227)
43 PRK12775 putative trifunctiona 77.3 9.8 0.00021 39.1 7.9 56 93-153 859-914 (1006)
44 COG1633 Uncharacterized conser 68.2 48 0.001 27.3 8.7 62 88-154 107-168 (176)
45 PF07875 Coat_F: Coat F domain 66.6 37 0.00081 22.9 8.4 56 97-157 4-59 (64)
46 cd01048 Ferritin_like_AB2 Unch 64.8 33 0.00072 26.7 6.8 54 97-158 3-56 (135)
47 cd00907 Bacterioferritin Bacte 59.6 76 0.0017 24.2 9.4 58 93-152 80-137 (153)
48 PRK12775 putative trifunctiona 59.4 45 0.00097 34.5 8.3 56 95-154 942-997 (1006)
49 COG0783 Dps DNA-binding ferrit 57.7 85 0.0018 25.6 8.1 66 93-160 14-79 (156)
50 PRK10635 bacterioferritin; Pro 50.5 1.3E+02 0.0029 24.2 8.4 60 91-152 79-138 (158)
51 PRK10304 ferritin; Provisional 48.6 1.4E+02 0.003 24.2 8.1 63 94-156 82-145 (165)
52 smart00055 FCH Fes/CIP4 homolo 44.7 32 0.00069 24.0 3.3 29 126-154 24-52 (87)
53 COG3546 Mn-containing catalase 43.9 1.1E+02 0.0025 27.4 7.3 64 91-159 17-83 (277)
54 PRK13456 DNA protection protei 42.8 1.8E+02 0.004 24.6 8.1 58 94-154 107-164 (186)
55 cd01044 Ferritin_CCC1_N Ferrit 41.9 1.4E+02 0.003 22.5 6.7 47 96-153 78-124 (125)
56 PF00611 FCH: Fes/CIP4, and EF 38.8 68 0.0015 22.1 4.3 27 126-152 24-50 (91)
57 cd01050 Acyl_ACP_Desat Acyl AC 38.7 2.2E+02 0.0047 25.6 8.4 70 90-161 55-125 (297)
58 PF04305 DUF455: Protein of un 36.1 2E+02 0.0044 25.2 7.6 80 93-176 65-144 (253)
59 cd01051 Mn_catalase Manganese 34.8 2.4E+02 0.0052 22.6 8.3 61 89-154 94-154 (156)
60 PF06175 MiaE: tRNA-(MS[2]IO[6 34.8 2.7E+02 0.0058 24.6 8.1 67 93-159 26-131 (240)
61 PF11860 DUF3380: Protein of u 33.1 1.3E+02 0.0028 25.1 5.6 60 95-156 76-135 (175)
62 PF00210 Ferritin: Ferritin-li 30.8 2.1E+02 0.0045 20.7 8.1 59 94-154 80-138 (142)
63 PF10097 DUF2335: Predicted me 29.9 1.2E+02 0.0026 20.2 4.1 28 126-153 12-39 (50)
64 PF09083 DUF1923: Domain of un 29.8 25 0.00053 24.6 0.7 22 41-62 17-38 (64)
65 PF05067 Mn_catalase: Manganes 28.3 2E+02 0.0044 25.8 6.4 59 92-154 18-79 (283)
66 cd07610 FCH_F-BAR The Extended 26.0 73 0.0016 25.2 3.0 35 125-159 14-48 (191)
67 PF03405 FA_desaturase_2: Fatt 25.5 4.4E+02 0.0096 24.2 8.2 74 89-165 56-134 (330)
68 cd07651 F-BAR_PombeCdc15_like 24.8 85 0.0018 26.3 3.3 33 125-157 19-51 (236)
69 PF05974 DUF892: Domain of unk 24.2 3.7E+02 0.008 21.4 8.7 63 93-160 4-66 (159)
70 cd07647 F-BAR_PSTPIP The F-BAR 23.9 88 0.0019 26.5 3.2 32 125-156 19-50 (239)
71 PF11553 DUF3231: Protein of u 22.9 3.8E+02 0.0083 21.1 9.6 40 128-167 124-163 (166)
72 cd07652 F-BAR_Rgd1 The F-BAR ( 22.9 1.1E+02 0.0023 26.1 3.6 29 126-154 20-48 (234)
73 PF14530 DUF4439: Domain of un 21.0 4.2E+02 0.0091 20.8 7.8 57 98-160 1-57 (131)
74 cd07653 F-BAR_CIP4-like The F- 20.9 1.4E+02 0.003 25.0 3.8 41 115-155 9-49 (251)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=99.95 E-value=2.3e-28 Score=199.83 Aligned_cols=84 Identities=18% Similarity=0.350 Sum_probs=80.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (183)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (183)
+.+++++.+||+|||+|++|||+|++||+||+ +.+|+|||+||+.||+|||+||+||++||++|||+|.+++|++|+.
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 46789999999999999999999999999998 4599999999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 030066 170 EFDHAE 175 (183)
Q Consensus 170 ef~~~e 175 (183)
+|++++
T Consensus 79 ~~~s~~ 84 (167)
T PRK15022 79 KLNSLE 84 (167)
T ss_pred ccCCHH
Confidence 999876
No 2
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.2e-28 Score=198.06 Aligned_cols=92 Identities=60% Similarity=0.869 Sum_probs=87.0
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 81 VPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 81 ~~~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
..+.+++||++.++|+.+||.|||+|+++||+|++|++||++++++++||++||.++|+|||+||++||+|+|+|||+|.
T Consensus 3 ~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~ 82 (178)
T KOG2332|consen 3 TKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE 82 (178)
T ss_pred ccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcCCCCc-ccC
Q 030066 161 LQSILMPLS-EFD 172 (183)
Q Consensus 161 l~~I~~P~~-ef~ 172 (183)
+++|.+|.. +|.
T Consensus 83 l~~i~~P~~~ew~ 95 (178)
T KOG2332|consen 83 LQDIKKPELDEWG 95 (178)
T ss_pred cccccccccchhH
Confidence 999999943 553
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=99.93 E-value=2.7e-26 Score=183.99 Aligned_cols=84 Identities=56% Similarity=0.894 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc-c
Q 030066 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS-E 170 (183)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~-e 170 (183)
+++|+++||+|||.|++++|+|++||+||++++++|+|||+||+.+|+|||+||++|++||++|||+|+++.|++|.. +
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~ 80 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE 80 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred cCCcc
Q 030066 171 FDHAE 175 (183)
Q Consensus 171 f~~~e 175 (183)
|++++
T Consensus 81 ~~~~~ 85 (160)
T cd00904 81 WGGTL 85 (160)
T ss_pred cCCHH
Confidence 98875
No 4
>PRK10304 ferritin; Provisional
Probab=99.93 E-value=5e-26 Score=184.84 Aligned_cols=84 Identities=24% Similarity=0.498 Sum_probs=80.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (183)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (183)
+++++++++||+|||.|++|+|+|++|++||+ ++||+|||+||+.+|+|||+||+||++|+++|||+|.+++|++|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 47899999999999999999999999999999 5699999999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 030066 170 EFDHAE 175 (183)
Q Consensus 170 ef~~~e 175 (183)
+|++++
T Consensus 79 ~~~s~~ 84 (165)
T PRK10304 79 EYSSLD 84 (165)
T ss_pred ccCCHH
Confidence 999875
No 5
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=99.91 E-value=1.6e-24 Score=173.22 Aligned_cols=84 Identities=62% Similarity=0.986 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC-cc
Q 030066 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL-SE 170 (183)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~-~e 170 (183)
+++|+++||+|||.|++|+|+|++||.||++.+++++|||+||+.+|+|||+||++|++|++.|||+|+++.|++|. .+
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 46899999999999999999999999999988789999999999999999999999999999999999999999998 88
Q ss_pred cCCcc
Q 030066 171 FDHAE 175 (183)
Q Consensus 171 f~~~e 175 (183)
|.+++
T Consensus 81 ~~~~~ 85 (161)
T cd01056 81 WGSGL 85 (161)
T ss_pred cCCHH
Confidence 98765
No 6
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-24 Score=175.19 Aligned_cols=84 Identities=33% Similarity=0.579 Sum_probs=80.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (183)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (183)
+.++++..+||+|||.|++++|+|++||+||+ ..+|+|+|+||+.||+||+.||+||++|+++||++|.+.+|.+|+.
T Consensus 1 mls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~ 78 (167)
T COG1528 1 MLSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN 78 (167)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc
Confidence 35789999999999999999999999999999 4599999999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 030066 170 EFDHAE 175 (183)
Q Consensus 170 ef~~~e 175 (183)
+|+++.
T Consensus 79 ~~~s~~ 84 (167)
T COG1528 79 KFSSLK 84 (167)
T ss_pred ccCCHH
Confidence 999874
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=99.84 E-value=1.3e-20 Score=148.24 Aligned_cols=82 Identities=49% Similarity=0.800 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCccc
Q 030066 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (183)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (183)
+++|+++||+||+.|+.|+|+|++||.||++. +++||++||+.+|+||++||+++++|+++|||+|.++.|++|..+|
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~--~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~ 78 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDSK--GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEF 78 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCccc
Confidence 47899999999999999999999999999964 9999999999999999999999999999999999999999998888
Q ss_pred CCcc
Q 030066 172 DHAE 175 (183)
Q Consensus 172 ~~~e 175 (183)
.++.
T Consensus 79 ~~~~ 82 (156)
T cd01055 79 ESLL 82 (156)
T ss_pred CCHH
Confidence 7764
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.64 E-value=1e-15 Score=123.86 Aligned_cols=79 Identities=22% Similarity=0.076 Sum_probs=74.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066 90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS 169 (183)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (183)
+.++++.+.||++++.|+.|+++|+.+|.+|+ ++|+++++.+|+.+|.||++||++|+++++.+||.|+++.+.+|..
T Consensus 2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~ 79 (158)
T PRK10635 2 KGDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI 79 (158)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 35789999999999999999999999999999 7899999999999999999999999999999999999999987765
Q ss_pred c
Q 030066 170 E 170 (183)
Q Consensus 170 e 170 (183)
.
T Consensus 80 g 80 (158)
T PRK10635 80 G 80 (158)
T ss_pred C
Confidence 4
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.62 E-value=1.8e-15 Score=120.19 Aligned_cols=77 Identities=23% Similarity=0.154 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (183)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e 170 (183)
++++.++||+||+.|+.++|+|+.++.||. .++++|++.||++++.||++||++|.+|++++||.|.++.|+.|...
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~ 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC
Confidence 678999999999999999999999999995 67999999999999999999999999999999999999999888766
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.51 E-value=9.1e-14 Score=108.37 Aligned_cols=77 Identities=25% Similarity=0.221 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170 (183)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e 170 (183)
++++++.||++|+.|+.+++.|+.++.||+ +.+++++++||+.++.||++||+.+.+|++.+||.|.+..+..|...
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~ 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC
Confidence 578999999999999999999999999997 45899999999999999999999999999999999999888777654
No 11
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.48 E-value=1e-13 Score=107.48 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccCCc
Q 030066 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA 174 (183)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ 174 (183)
+.+.||+.+..|++++++|++|+.|+++ .|++|+|+||+.++.+|+.||+++++|++++||.|. .|..+|+++
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~~--~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~~~~~ 74 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKARK--EGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIGIGDT 74 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCCcchH
Confidence 4578999999999999999999999995 599999999999999999999999999999999999 666677655
Q ss_pred c
Q 030066 175 E 175 (183)
Q Consensus 175 e 175 (183)
.
T Consensus 75 ~ 75 (134)
T cd01041 75 L 75 (134)
T ss_pred H
Confidence 3
No 12
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.44 E-value=2e-13 Score=102.84 Aligned_cols=72 Identities=42% Similarity=0.539 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-----CCcCCCCc
Q 030066 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL-----QSILMPLS 169 (183)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l-----~~I~~P~~ 169 (183)
+++||++|+.|+.+++.|+.++.+|+ +.+++|+++||+++++|+++|++++.+|++.|||.|.. ..+.+|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~ 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc
Confidence 47899999999999999999999999 57999999999999999999999999999999995544 44555544
No 13
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.26 E-value=3e-11 Score=93.70 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS 163 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~ 163 (183)
+++.+.||++++.|+.++++|+.++.++.. .++.++++||++++.||++||+++.++++.+||+|....
T Consensus 5 ~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g--~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~ 73 (148)
T cd01052 5 DELIELLNKAFADEWLAYYYYTILAKHVKG--PEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDP 73 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCh
Confidence 578999999999999999999999999994 589999999999999999999999999999999999855
No 14
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.10 E-value=3.3e-10 Score=87.57 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ 152 (183)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~ 152 (183)
+++.||.||+.|+++++.|++|+.||+. .|++++|+||+.++.+|+.||+++.+++
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~--eG~~~~A~~f~~~a~eE~~HA~~~~~~l 57 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQR--EGYPEVAEELKRIAMEEAEHAARFAELL 57 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999995 4999999999999999999999999976
No 15
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.00 E-value=2.2e-09 Score=87.14 Aligned_cols=74 Identities=24% Similarity=0.181 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCC
Q 030066 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM 166 (183)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~ 166 (183)
-.+++...||+++..||.|.++|+-++..+. |||+.-++++|+++|.+|+.||++++++++..+|.|+++.+.+
T Consensus 3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~ 76 (157)
T COG2193 3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGK 76 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Confidence 3478999999999999999999999999999 8999999999999999999999999999999999999999875
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=98.20 E-value=8.7e-06 Score=68.25 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 164 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I 164 (183)
+++.+.||+.+..|+.+.|.|...++... .+.-++++.||.+...||+.||+.|.++|.+.||.+.+..-
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~ 88 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIR 88 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChH
Confidence 58899999999999999999999999988 45678999999999999999999999999999999987544
No 17
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.11 E-value=2e-05 Score=55.78 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (183)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~ 162 (183)
+||..+..|+.+...|..++..++ .+++..+|..++.+|+.|++.|.+++..+|+.+...
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~ 61 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLP 61 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 689999999999999999999876 588999999999999999999999999999988654
No 18
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=97.52 E-value=0.00059 Score=53.79 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (183)
Q Consensus 92 s~e~e~aLNeQIn---~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~ 162 (183)
+++....|++|+. .|+.+..+|+..+.-... +.+.+++.|...|.+|++|++.|.+.+.+.||.+.+.
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~---~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~ 81 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISEE---KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYR 81 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 3567788888887 999999999988887763 5799999999999999999999999999999988653
No 19
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=97.25 E-value=0.0014 Score=48.51 Aligned_cols=54 Identities=31% Similarity=0.361 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (183)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG 156 (183)
+||..|..|..+...|..++..+++ +++..+|+..+.+|+.|++.|...+...|
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999998874 38999999999999999999999998887
No 20
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.19 E-value=0.002 Score=47.90 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (183)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l 161 (183)
+.|+..|..|..+...|..++.-+.++ + |.+.+.|+..|.+|.+|+..|.+.+.++++....
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~ 62 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP 62 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 468889999999999999999999965 6 8899999999999999999999999888765543
No 21
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=96.91 E-value=0.0026 Score=49.10 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162 (183)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~ 162 (183)
.||..+.-++.....|....-+-. ..++..+..+|.+.++++++|+..+.+++...||.|..+
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~ 64 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGT 64 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 577777778777777775444444 568999999999999999999999999999999999876
No 22
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.50 E-value=0.016 Score=44.39 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
.+|+.++.|..+..+|..++....+ +...+.|...|++|++|++-+-+++..+|+.+.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~ 59 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP 59 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 4788999999999999999998763 348999999999999999999999999888764
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.059 Score=44.61 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066 92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (183)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V 159 (183)
...++++|+..|..|..+-..|..++...+++ -+.+.|...+.+|++|...|-+.+.+++++.
T Consensus 22 ~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 22 ELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34789999999999999999999999999964 4889999999999999999999998888776
No 24
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.04 E-value=0.24 Score=36.79 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (183)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l 161 (183)
++...||+.|.....+...|-..+--+.+ +.+..+|.+.+.+...|+..|-.++...||.|.-
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~ 63 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 46789999999999999999999988873 6788999999999999999999999999998753
No 25
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=94.82 E-value=0.21 Score=40.55 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
..+.+.||..+.-++.....|....-+-. ...+..+..+|.++++++++|+..+-+++...||.|.
T Consensus 21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~ 86 (162)
T PRK09448 21 KATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVAL 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 45788999999888887777776555444 3478899999999999999999999999999999873
No 26
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=94.51 E-value=0.16 Score=42.02 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (183)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG 156 (183)
+++-|-+-..-|=.+-..|+.||...++. |++.+|+.|+..|.+|..||..+.+.+.+-+
T Consensus 5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 5 TEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555555666888999999999999976 9999999999999999999999998876533
No 27
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=94.13 E-value=0.2 Score=40.52 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030066 93 DDCEAAINEQI---NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (183)
Q Consensus 93 ~e~e~aLNeQI---n~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG 157 (183)
+.....|.+|+ +-|+.+..+|+.-++-++ ..+.+...|...+.||+.|++.|-+.+...||
T Consensus 19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~ 82 (156)
T cd01051 19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK 82 (156)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555666665 369999999999999984 35889999999999999999999999999998
No 28
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=90.96 E-value=1.1 Score=35.45 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
...||+.|.....+-.-|-..+-..+ =+.+..+|.+.+.+...|+..|-.++...||.|.
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~ 61 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPE 61 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 57899999999999999999888765 4679999999999999999999999999999875
No 29
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=90.60 E-value=1 Score=37.14 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066 105 VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (183)
Q Consensus 105 ~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l 161 (183)
-|+.|..+|..-.+.+.+ +.+..++++.+++|.+|-..|-+.+.++|+++.+
T Consensus 11 GE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~ 62 (165)
T cd01042 11 GEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSL 62 (165)
T ss_pred chHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 489999999988888763 8899999999999999999999999999999875
No 30
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=88.45 E-value=2.8 Score=32.14 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n 153 (183)
+.+.+.|..-+..|..++-.|..++..+... +....+.||+.....|.+|++.+-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~e--gd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKAE--GLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888999999999999999999954 8999999999999999999998877654
No 31
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=88.03 E-value=7.4 Score=29.81 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 93 DDCEAAINEQINVEYN-VSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~-ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n 153 (183)
..+...|..-+..|.. +.-.|..++..+... +-...+.||.....+|..|+..|=+.+.
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e--~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEE--GFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888999986 779999999999954 8999999999999999999998876654
No 32
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=84.70 E-value=9.3 Score=31.72 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V 159 (183)
+++.+.|-..-..|+.+.|-|.-++.-.-. ..=.|.-.|..+.-+|-+.|++.+..++.+.||.+
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~G--le~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~ 80 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALKG--LEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDL 80 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 355556666667899999999888776552 23455667777777888999999999999999975
No 33
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=83.80 E-value=8.9 Score=28.02 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 030066 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLME 150 (183)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLik 150 (183)
....++.-.+..|-.+.-.|..++..+. -+...++|...+.+|..|...|-+
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998876 466889999999999999998864
No 34
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=83.72 E-value=11 Score=31.79 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP 167 (183)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P 167 (183)
+....|-++-+-|..|+-+=++|=+-+- ..+++..-+-..+.||++|-++.++.+.+||. .+..+.++
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~ 85 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKD 85 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCC
Confidence 5677888999999999999887755554 35789999999999999999999999999996 34444433
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=82.96 E-value=4.6 Score=33.41 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066 104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (183)
Q Consensus 104 n~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l 161 (183)
.-|+.|-.+|..-...+.. .+....++++..++|.+|-..|-+.+.++|.++.+
T Consensus 12 AGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~ 65 (172)
T PF03232_consen 12 AGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSL 65 (172)
T ss_pred HHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcH
Confidence 5699999999988887773 67899999999999999999999999999998764
No 36
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=82.88 E-value=7.4 Score=28.37 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=47.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030066 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (183)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY 151 (183)
.......+|...|..|-.+.-.|..++.-+.+ +.....|....++|+.|...|-+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d-----~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAEKAED-----PEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567889999999999999999999987663 258899999999999999988653
No 37
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=81.44 E-value=13 Score=25.61 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY 151 (183)
......|...+..|-.+...|..+...+. -+....+|.....+|..|...+.++
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777789999999999999998876 3568999999999999999988764
No 38
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=80.78 E-value=9.7 Score=29.73 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=47.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030066 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151 (183)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY 151 (183)
......+.|...+..|-.+...|..++...+ =+.....|...+.+|.+|...|-+.
T Consensus 98 ~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 98 YGESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446777999999999999999999999654 2678889999999999999887653
No 39
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=80.67 E-value=11 Score=29.26 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n 153 (183)
+.+.++|..-++.|..+...|..+...+... +-+..+.||..--+++.+|.+.+-+++.
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~--~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLVDLALEE--KDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999854 6788899999888888898888777665
No 40
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=79.90 E-value=10 Score=32.46 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=55.7
Q ss_pred CCCCcccccccccCHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 79 PTVPQLSLARHKFTDDCEAAINEQIN----VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 79 ~~~~~~S~~Rq~~s~e~e~aLNeQIn----~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
|++|.....|..+|+.-..-+...|. -|+-|-++|..-+++....+ +. --.++.++||..|--.+-+++.+
T Consensus 22 ~~~~~~a~~rpdlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~~---~R--~~l~em~d~E~~HL~~f~~~l~e 96 (204)
T COG2941 22 PTRPRPAMPRPDLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSPE---PR--IQLKEMADEEIDHLAWFEQRLLE 96 (204)
T ss_pred CCCCCCCCCCCCcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCcc---hH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343344455555544444443332 49999999998888877542 22 28899999999999999999999
Q ss_pred cCCeeee
Q 030066 155 RGGKVKL 161 (183)
Q Consensus 155 RGG~V~l 161 (183)
|+.++.+
T Consensus 97 ~~vRPsl 103 (204)
T COG2941 97 LGVRPSL 103 (204)
T ss_pred ccCCccH
Confidence 9999876
No 41
>PF13668 Ferritin_2: Ferritin-like domain
Probab=77.48 E-value=22 Score=27.04 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCccc
Q 030066 97 AAINEQINVEYNVSYVYHAMFAYFDRD---NVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF 171 (183)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~d---nv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (183)
+.||-.+++|+...-.|..-..-+... ..-=+....+|++-...|+.|+..|-+.+. |+++. +.|..+|
T Consensus 4 ~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~ 75 (137)
T PF13668_consen 4 DILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDF 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCcccc
Confidence 578999999999999999777643210 112345678899999999999999988886 65552 4554455
No 42
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=77.38 E-value=17 Score=31.24 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066 99 INEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 164 (183)
Q Consensus 99 LNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I 164 (183)
|+..|.+|+...-.||..++--... .-...+.-.+.-+.|||-|..-.-+-+|.-||.+.+.+-
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~~--~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~~~ 64 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKPG--TNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLTSP 64 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS-T--TSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 4567899999999999544444321 233388999999999999999999999999999888633
No 43
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=77.31 E-value=9.8 Score=39.14 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n 153 (183)
....++|.-.|++|-..--.|..++.-.. =+.+.++|...|++|++|.+.|.+...
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46688999999999999999999998764 467999999999999999999987753
No 44
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=68.23 E-value=48 Score=27.34 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=53.5
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 88 Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
.+.-+....++|-..|..|-.+.-+|.-+...-.+ ++..+.|+..++.|+.|+..+..+.+.
T Consensus 107 ~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l~~~~~~ 168 (176)
T COG1633 107 EMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGLLSLYNR 168 (176)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999887664 457889999999999999999887765
No 45
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=66.59 E-value=37 Score=22.94 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030066 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (183)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG 157 (183)
..+++.++.+=.++..|.....=+. =|.+-..|.....++.+++..+.+|++++|=
T Consensus 4 ~i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 4 DIANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3466777778888888987777666 3678899999999999999999999999984
No 46
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=64.83 E-value=33 Score=26.66 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 030066 97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGK 158 (183)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~ 158 (183)
++|...+.+|..+--+|..++--|. .-.-|...+..|.+|...+.+.+...|..
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~ 56 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLP 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5678889999999999999998773 34567888999999999998888776643
No 47
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=59.60 E-value=76 Score=24.17 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ 152 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~ 152 (183)
..+.+.|...|..|-.+.-.|..+...++.. +=+..+.||.....+|.+|...|=+++
T Consensus 80 ~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~--~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 80 EDVPEMLENDLALEYEAIAALNEAIALCEEV--GDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998888743 678899999999999999988665443
No 48
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=59.36 E-value=45 Score=34.48 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
..++|.-.|..|-.+-..|.-|+..-.+. +...++|.+.++||++|-..|-+.+..
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA~EEk~Hl~~L~~~~d~ 997 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETPDG----SVERQLYKELAAEEREHVALLTTEFER 997 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999986642 224689999999999999998876543
No 49
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=57.65 E-value=85 Score=25.64 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
.++.+.||+++.- +++-|+=+-=+.|.=+ .-.+.-+..+|.++.++-.+|...+.+++...||.+.
T Consensus 14 ~~~~~~Ln~~lAd-~~~Ly~k~~~~HWnV~-G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~ 79 (156)
T COG0783 14 KKIAEALNQLLAD-LYVLYLKTHNYHWNVK-GPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPL 79 (156)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhccccee-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 5677778866543 2222222222333333 3466778999999999999999999999999999874
No 50
>PRK10635 bacterioferritin; Provisional
Probab=50.54 E-value=1.3e+02 Score=24.17 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ 152 (183)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~ 152 (183)
..+.+.+.|..-+..|..+.-.|..+..+|... +=..-..+|..--.+|-+|...|=..+
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~--~D~~s~~ll~~iL~dEe~H~~~le~~l 138 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIAYADSV--HDYVSRDMMIEILADEEGHIDWLETEL 138 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999953 456677788888888889998776543
No 51
>PRK10304 ferritin; Provisional
Probab=48.58 E-value=1.4e+02 Score=24.16 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRD-NVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (183)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~d-nv~L~GfAkFF~~qSeEEreHAekLikY~n~RG 156 (183)
.+.+++..-+..|..++-.|..+...|... |-.-..|=.||.+.-.||-.|+..+++.+..-|
T Consensus 82 s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 82 SLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 578899999999999999999999888762 233334445665555567789999998776544
No 52
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=44.73 E-value=32 Score=24.00 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 126 ~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
-+.-+..||++.++=|.++|.+|-+-..+
T Consensus 24 ~~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 24 LLEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35669999999999999999999987664
No 53
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=43.94 E-value=1.1e+02 Score=27.39 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066 91 FTDDCEAAINEQI---NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (183)
Q Consensus 91 ~s~e~e~aLNeQI---n~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V 159 (183)
-++...++|.+|+ .-|+.++.+|+.-++-|. + .++-..+..-+-||..|-|-+-..++..-...
T Consensus 17 pdp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga 83 (277)
T COG3546 17 PNPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGA 83 (277)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Confidence 3567788888887 579999999999888777 2 66888899999999999998877665544333
No 54
>PRK13456 DNA protection protein DPS; Provisional
Probab=42.84 E-value=1.8e+02 Score=24.57 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
.+.+.|..-|..|--|--.|..|--++... +--...-... --.+|.+|++.|.+++..
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~~k--Dp~T~~l~~~-IL~dE~eH~~dl~~lL~~ 164 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTAGK--DPRTYDLALA-ILQEEIEHEAWFSELLGG 164 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999843 4444444444 445667999999999853
No 55
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=41.88 E-value=1.4e+02 Score=22.49 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153 (183)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n 153 (183)
..++.-.+..|-.+...|..++.. -..+.+-..+|++|...|.+.+.
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777778899999888888766 23668899999999999987763
No 56
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=38.77 E-value=68 Score=22.09 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 126 ALKGLAKFFKESSEEEREHAEKLMEYQ 152 (183)
Q Consensus 126 ~L~GfAkFF~~qSeEEreHAekLikY~ 152 (183)
-+..+..||++.+.-|.++|..|-+.-
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~ 50 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLA 50 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999999998744
No 57
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=38.72 E-value=2.2e+02 Score=25.65 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066 90 KFTDDCEAAINEQINVEYNVSYVYHA-MFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL 161 (183)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~Yls-MAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l 161 (183)
.+++....+|---.-.| ...=.|+. +..+|..++..-+++++|......||-.|+.-|-+|+..- |++..
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp 125 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDP 125 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCH
Confidence 46676666665555555 34445654 3444443322447899999999999999999999999774 44433
No 58
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=36.11 E-value=2e+02 Score=25.19 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccC
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD 172 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~ 172 (183)
..-...|....|.||+|....+-...=|.. +.... |-.=|-+.+.||-.|..-+.+++...|. .+++++....=|.
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~~-f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPRE-FYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDGLWE 140 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhHHHH
Confidence 445677777889999999999988888822 22333 3333456889999999999999999885 6677766655555
Q ss_pred Cccc
Q 030066 173 HAEK 176 (183)
Q Consensus 173 ~~ek 176 (183)
..++
T Consensus 141 ~~~~ 144 (253)
T PF04305_consen 141 AAEQ 144 (253)
T ss_pred HHHH
Confidence 4443
No 59
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=34.81 E-value=2.4e+02 Score=22.64 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=48.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
-+++.++.+-|..-|..|-.|.-+|.-++..-+ | |+.-.-+.....+|..|.+.|-+.+.+
T Consensus 94 v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 94 IQSSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999999876 2 344455555677899999999888764
No 60
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=34.75 E-value=2.7e+02 Score=24.58 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCcc--ch------------------------------------hHHHH
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAM-FAYFDRDNVA--LK------------------------------------GLAKF 133 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsM-AayFd~dnv~--L~------------------------------------GfAkF 133 (183)
.+....|.++.|-|..|+-+=++| .-|..+.+.+ |- .+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 456788999999999999988876 5565332211 22 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066 134 FKESSEEEREHAEKLMEYQNKRGGKV 159 (183)
Q Consensus 134 F~~qSeEEreHAekLikY~n~RGG~V 159 (183)
+-..+.||+.|-+..++.+.+||...
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RGi~l 131 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRGIPL 131 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45678999999999999999999654
No 61
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=33.09 E-value=1.3e+02 Score=25.08 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066 95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (183)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG 156 (183)
....||+.-.++=.+.=.+.-|++.+.. .|++....|+.....-|.+|-+-|++||...+
T Consensus 76 ~A~~ld~~AAl~SaSWG~fQIMGfn~~~--~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 76 RARALDEEAALESASWGLFQIMGFNWKA--LGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHHhhCHHHHHHHhhhhHHHHHHHHHHH--cCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 3455677777777777788899999884 59999999999999999999999999997744
No 62
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=30.77 E-value=2.1e+02 Score=20.72 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
.+...+...+..|-.....|..+..-++.. +=+....|+...-.++.+|...|-+++..
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~--~D~~t~~~~~~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEKE--GDPETADFLDEFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999853 45788999988888888888887777653
No 63
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.85 E-value=1.2e+02 Score=20.18 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=24.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066 126 ALKGLAKFFKESSEEEREHAEKLMEYQN 153 (183)
Q Consensus 126 ~L~GfAkFF~~qSeEEreHAekLikY~n 153 (183)
-+||.|......++.|.+|-.++-+-.+
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l 39 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKAL 39 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998855443
No 64
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=29.81 E-value=25 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=15.7
Q ss_pred CCCCCceEEEeccCCCCCcccc
Q 030066 41 PKNDNGVVVCASKNANNSPLTG 62 (183)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~g 62 (183)
.+.|..+++.|.-++..+.+||
T Consensus 17 ek~g~k~viaanvgke~ke~sg 38 (64)
T PF09083_consen 17 EKNGQKIVIAANVGKEPKEISG 38 (64)
T ss_dssp EETTEEEEEEEE-SSS-EEEEE
T ss_pred ecCCcEEEEEeccCCCcccccC
Confidence 3556778888888888888887
No 65
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=28.29 E-value=2e+02 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 92 s~e~e~aLNeQIn---~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
.+...++|.+|+. -|+.++.+|+.-++-|.... - +...+..-+-||..|.|-+-.-+++
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~~-~---~kdlL~dIatEEl~H~Emvat~I~~ 79 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGPE-K---YKDLLMDIATEELGHVEMVATMIAQ 79 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SSTT-T---THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCch-H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888874 69999999999999998542 1 3488999999999999988764444
No 66
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=26.03 E-value=73 Score=25.17 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=28.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066 125 VALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159 (183)
Q Consensus 125 v~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V 159 (183)
.-+..++.||++.+.=|.++|.+|-+.-..-.+..
T Consensus 14 ~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~ 48 (191)
T cd07610 14 DLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35678999999999999999999998776655443
No 67
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=25.54 E-value=4.4e+02 Score=24.16 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=44.3
Q ss_pred cccCHHHHHHHH-HHHHHHHHHHHHHHHHH-Hhccc---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC
Q 030066 89 HKFTDDCEAAIN-EQINVEYNVSYVYHAMF-AYFDR---DNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS 163 (183)
Q Consensus 89 q~~s~e~e~aLN-eQIn~EL~ASy~YlsMA-ayFd~---dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~ 163 (183)
..++++...+|- ..|..|-=-+ |+.+- .+|.- +.....+.++|-....-||-.|+.-|-+||.-.| .+....
T Consensus 56 ~~Lpd~~~~alv~~llTEd~LPs--Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~ 132 (330)
T PF03405_consen 56 STLPDDARVALVGNLLTEDNLPS--YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVA 132 (330)
T ss_dssp HTS-HHHHHHHHHHHHHHHTHHH--HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCC
T ss_pred ccCCHHHHHHHHHHHHhhhhhhH--HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHH
Confidence 346676655544 4444443333 45443 33332 1111456899999999999999999999997644 555544
Q ss_pred cC
Q 030066 164 IL 165 (183)
Q Consensus 164 I~ 165 (183)
++
T Consensus 133 lE 134 (330)
T PF03405_consen 133 LE 134 (330)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 68
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.77 E-value=85 Score=26.35 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=27.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030066 125 VALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157 (183)
Q Consensus 125 v~L~GfAkFF~~qSeEEreHAekLikY~n~RGG 157 (183)
..+..++.||++.|.=|.++|.+|-+.-..-.+
T Consensus 19 ~~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 19 RTLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 357789999999999999999999987766544
No 69
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=24.20 E-value=3.7e+02 Score=21.38 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
+-....|.+....|-+..-.+-.|+.-.. . |.+..-|.++.++.++|.++|-+-+...|..+.
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~----~-~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~ 66 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS----S-PELKAALEEHLEETEQQIERLEQIFEALGADPS 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 34567788888899999999999887666 3 788999999999999999999999999898764
No 70
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.93 E-value=88 Score=26.47 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=27.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066 125 VALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156 (183)
Q Consensus 125 v~L~GfAkFF~~qSeEEreHAekLikY~n~RG 156 (183)
.-.+.|+.||++.+.=|.++|.+|.+.-..-+
T Consensus 19 ~~~~el~~f~keRa~iE~eYak~L~kLak~~~ 50 (239)
T cd07647 19 KMCKELEDFLKQRAKAEEDYGKALLKLSKSAG 50 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35677999999999999999999998876543
No 71
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=22.91 E-value=3.8e+02 Score=21.09 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066 128 KGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP 167 (183)
Q Consensus 128 ~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P 167 (183)
+.+..+|.+...++.+-.+++.+|+..+|--..-+.+..|
T Consensus 124 ~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~~pP~~~~~ 163 (166)
T PF11553_consen 124 NDLRAFFMKFLMEALELYDKIVKLMKEKGWLERPPYIPDP 163 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT------B----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCC
Confidence 3489999999999999999999999999865554444433
No 72
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=22.88 E-value=1.1e+02 Score=26.14 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066 126 ALKGLAKFFKESSEEEREHAEKLMEYQNK 154 (183)
Q Consensus 126 ~L~GfAkFF~~qSeEEreHAekLikY~n~ 154 (183)
..+.|+.|+++.+.=|.+||..|.+.-..
T Consensus 20 ~~ke~~~FlkkRa~iEeeYak~L~KLak~ 48 (234)
T cd07652 20 SAKEFATFLKKRAAIEEEHARGLKKLART 48 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999986554
No 73
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=20.95 E-value=4.2e+02 Score=20.85 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066 98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK 160 (183)
Q Consensus 98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~ 160 (183)
+|...+..|..+.|.|=.++.+.+.+ ...--.....+.|...+.+...+..+|+.+-
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p 57 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPP 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 47788899999999999999998754 3344456666778888889999999987663
No 74
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=20.90 E-value=1.4e+02 Score=24.99 Aligned_cols=41 Identities=27% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030066 115 AMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155 (183)
Q Consensus 115 sMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~R 155 (183)
.+.-+.+..-.-+..+..||++.+.=|.++|.+|-+.-..-
T Consensus 9 ~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~ 49 (251)
T cd07653 9 NLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKY 49 (251)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444577899999999999999999999866543
Done!