Query 030068
Match_columns 183
No_of_seqs 187 out of 704
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00464 SNF-7-like protein; P 100.0 5.4E-37 1.2E-41 254.1 19.6 148 5-158 54-201 (211)
2 KOG1655 Protein involved in va 100.0 2.2E-36 4.7E-41 244.6 19.1 164 1-177 52-218 (218)
3 KOG1656 Protein involved in gl 100.0 2.7E-34 5.9E-39 233.6 16.7 121 9-129 58-178 (221)
4 PTZ00446 vacuolar sorting prot 100.0 6.6E-32 1.4E-36 220.3 16.6 120 6-127 61-180 (191)
5 KOG2910 Uncharacterized conser 100.0 2.7E-30 5.8E-35 208.5 17.7 149 5-161 49-198 (209)
6 PF03357 Snf7: Snf7; InterPro 99.9 2.3E-25 5.1E-30 175.8 6.4 124 5-128 34-157 (171)
7 KOG2911 Uncharacterized conser 99.9 9.9E-22 2.1E-26 175.1 16.2 122 5-126 266-388 (439)
8 KOG3230 Vacuolar assembly/sort 99.0 1.1E-08 2.3E-13 83.9 12.8 120 6-127 50-169 (224)
9 KOG3229 Vacuolar sorting prote 98.1 0.00012 2.6E-09 60.7 13.7 131 5-135 51-183 (227)
10 KOG3231 Predicted assembly/vac 98.0 0.00037 8.1E-09 56.2 14.0 95 6-100 49-143 (208)
11 PTZ00464 SNF-7-like protein; P 97.8 0.00052 1.1E-08 57.3 12.8 80 25-105 67-150 (211)
12 KOG3232 Vacuolar assembly/sort 97.7 0.0086 1.9E-07 48.7 17.4 71 29-99 66-136 (203)
13 PRK10698 phage shock protein P 96.6 0.096 2.1E-06 43.9 13.6 94 5-98 78-185 (222)
14 PF04012 PspA_IM30: PspA/IM30 96.6 0.087 1.9E-06 43.4 13.2 114 5-123 77-204 (221)
15 KOG1655 Protein involved in va 95.8 0.43 9.2E-06 39.7 13.0 108 14-122 57-169 (218)
16 TIGR02977 phageshock_pspA phag 95.6 0.27 5.8E-06 40.9 11.6 94 5-98 78-185 (219)
17 KOG1656 Protein involved in gl 94.7 0.98 2.1E-05 37.7 12.0 42 24-65 80-121 (221)
18 COG5491 VPS24 Conserved protei 94.3 1.9 4.2E-05 35.9 13.0 75 21-95 37-112 (204)
19 PF03357 Snf7: Snf7; InterPro 92.8 0.32 7E-06 37.8 5.8 132 10-157 27-170 (171)
20 PTZ00446 vacuolar sorting prot 92.5 2.2 4.8E-05 35.2 10.6 80 15-98 77-157 (191)
21 KOG3230 Vacuolar assembly/sort 92.2 6.2 0.00013 32.9 12.7 118 9-134 57-183 (224)
22 COG1842 PspA Phage shock prote 89.5 12 0.00025 31.6 14.4 114 5-122 78-205 (225)
23 PF05852 DUF848: Gammaherpesvi 86.3 15 0.00032 29.1 10.6 29 71-99 85-113 (146)
24 KOG2910 Uncharacterized conser 82.6 27 0.00058 29.1 12.8 16 148-163 169-184 (209)
25 COG5491 VPS24 Conserved protei 78.8 37 0.00081 28.3 13.8 100 23-125 46-149 (204)
26 PF03908 Sec20: Sec20; InterP 77.8 23 0.00049 25.3 8.3 62 16-77 9-71 (92)
27 PF08651 DASH_Duo1: DASH compl 77.2 18 0.00038 25.6 7.0 64 24-102 3-66 (78)
28 PF09340 NuA4: Histone acetylt 71.3 9.2 0.0002 27.1 4.4 32 13-44 3-34 (80)
29 cd00632 Prefoldin_beta Prefold 68.6 43 0.00092 24.4 9.8 96 18-124 5-100 (105)
30 TIGR02338 gimC_beta prefoldin, 62.1 60 0.0013 23.8 9.3 97 17-124 8-104 (110)
31 PF08651 DASH_Duo1: DASH compl 61.5 54 0.0012 23.1 8.3 35 22-56 15-49 (78)
32 PRK04778 septation ring format 57.1 1.5E+02 0.0033 28.0 10.9 103 14-125 153-266 (569)
33 PRK03947 prefoldin subunit alp 55.6 89 0.0019 23.7 11.1 43 13-55 7-49 (140)
34 KOG0994 Extracellular matrix g 54.8 2.4E+02 0.0051 30.1 12.0 32 72-103 1508-1539(1758)
35 TIGR03687 pupylate_cterm ubiqu 54.3 18 0.00039 21.5 2.7 18 75-92 3-20 (33)
36 PF00804 Syntaxin: Syntaxin; 53.9 34 0.00073 23.7 4.7 49 75-125 7-55 (103)
37 PRK13848 conjugal transfer pro 49.7 66 0.0014 23.7 5.6 51 75-126 10-62 (98)
38 KOG3232 Vacuolar assembly/sort 46.1 1.7E+02 0.0037 24.1 9.1 103 16-123 57-162 (203)
39 cd04779 HTH_MerR-like_sg4 Heli 44.9 1.4E+02 0.0031 22.9 7.8 53 16-68 78-130 (134)
40 COG1604 CRISPR system related 42.4 7.9 0.00017 33.3 -0.1 13 171-183 106-118 (257)
41 COG2719 SpoVR Uncharacterized 41.9 1.4E+02 0.003 28.1 7.7 68 52-123 133-200 (495)
42 cd00890 Prefoldin Prefoldin is 41.8 1.3E+02 0.0029 21.9 6.6 40 17-56 4-43 (129)
43 PRK14064 exodeoxyribonuclease 41.7 28 0.00062 24.3 2.6 41 32-72 9-50 (75)
44 PRK05560 DNA gyrase subunit A; 41.0 3.8E+02 0.0083 26.8 12.2 87 35-126 382-476 (805)
45 PF10475 DUF2450: Protein of u 40.4 2.4E+02 0.0051 24.2 12.4 88 14-101 52-141 (291)
46 TIGR01061 parC_Gpos DNA topois 39.8 3.9E+02 0.0084 26.5 12.1 88 35-127 379-474 (738)
47 KOG4648 Uncharacterized conser 39.6 1E+02 0.0023 28.4 6.5 63 11-73 135-209 (536)
48 PF07820 TraC: TraC-like prote 38.6 1.6E+02 0.0034 21.6 6.2 21 107-127 42-62 (92)
49 COG0576 GrpE Molecular chapero 37.9 73 0.0016 26.1 4.9 10 91-100 124-133 (193)
50 smart00685 DM14 Repeats in fly 37.4 51 0.0011 22.1 3.2 27 5-31 18-44 (59)
51 PRK14127 cell division protein 37.3 71 0.0015 24.0 4.4 30 62-91 13-42 (109)
52 PF07464 ApoLp-III: Apolipopho 36.9 40 0.00086 26.9 3.1 28 38-65 12-39 (155)
53 PHA03185 UL14 tegument protein 34.7 2.8E+02 0.006 23.3 15.2 23 107-129 135-157 (214)
54 PF07996 T4SS: Type IV secreti 34.6 84 0.0018 25.0 4.8 53 4-56 104-156 (195)
55 PF13094 CENP-Q: CENP-Q, a CEN 34.6 2.2E+02 0.0047 22.1 8.4 54 15-68 23-77 (160)
56 TIGR01063 gyrA DNA gyrase, A s 34.5 4.8E+02 0.01 26.0 12.2 87 35-126 379-473 (800)
57 PRK09631 DNA topoisomerase IV 34.3 3E+02 0.0065 26.9 9.1 95 24-126 328-447 (635)
58 COG1256 FlgK Flagellar hook-as 33.9 4.3E+02 0.0093 25.3 11.8 70 52-124 141-210 (552)
59 PRK10869 recombination and rep 33.6 4.2E+02 0.0091 25.1 10.8 44 55-100 243-286 (553)
60 TIGR02977 phageshock_pspA phag 33.3 2.7E+02 0.0059 22.8 15.9 68 16-83 103-174 (219)
61 KOG1853 LIS1-interacting prote 32.8 3.4E+02 0.0074 23.8 13.5 69 15-83 73-144 (333)
62 PF07820 TraC: TraC-like prote 32.8 1.7E+02 0.0037 21.4 5.5 42 35-76 4-45 (92)
63 COG5665 NOT5 CCR4-NOT transcri 32.4 2.3E+02 0.0051 26.3 7.5 26 64-89 153-179 (548)
64 PF02583 Trns_repr_metal: Meta 32.2 1.6E+02 0.0035 20.7 5.4 48 21-71 4-51 (85)
65 COG3078 Uncharacterized protei 32.1 94 0.002 24.9 4.4 16 106-121 149-164 (169)
66 PRK14162 heat shock protein Gr 32.0 79 0.0017 26.1 4.2 9 92-100 127-135 (194)
67 PRK14070 exodeoxyribonuclease 32.0 55 0.0012 22.6 2.8 36 37-72 3-39 (69)
68 COG1730 GIM5 Predicted prefold 31.5 2.5E+02 0.0054 22.1 6.8 43 17-59 11-53 (145)
69 COG0466 Lon ATP-dependent Lon 31.5 4.7E+02 0.01 26.2 9.9 100 6-122 176-281 (782)
70 cd00187 TOP4c DNA Topoisomeras 30.5 4E+02 0.0088 24.7 9.0 90 15-124 329-421 (445)
71 PF02609 Exonuc_VII_S: Exonucl 29.9 1.5E+02 0.0033 18.8 4.7 39 34-72 4-43 (53)
72 PRK14146 heat shock protein Gr 29.4 85 0.0018 26.3 4.0 8 92-99 142-149 (215)
73 PF07870 DUF1657: Protein of u 29.3 1.2E+02 0.0027 19.3 4.0 46 38-85 2-47 (50)
74 TIGR02894 DNA_bind_RsfA transc 29.2 3.1E+02 0.0066 22.1 8.8 33 36-68 80-112 (161)
75 PRK10807 paraquat-inducible pr 29.0 5.1E+02 0.011 24.6 9.8 42 56-100 450-491 (547)
76 PRK14068 exodeoxyribonuclease 28.8 63 0.0014 22.6 2.7 41 32-72 9-50 (76)
77 PF12631 GTPase_Cys_C: Catalyt 28.1 1.9E+02 0.0042 19.5 7.8 20 54-73 41-60 (73)
78 PRK00977 exodeoxyribonuclease 28.1 1E+02 0.0022 21.7 3.7 40 33-72 14-54 (80)
79 PF04912 Dynamitin: Dynamitin 27.9 3.7E+02 0.0081 24.0 8.2 46 73-122 337-382 (388)
80 KOG0995 Centromere-associated 27.8 5.7E+02 0.012 24.8 12.3 85 15-99 261-356 (581)
81 PHA02698 hypothetical protein; 27.3 1.8E+02 0.0039 20.7 4.7 44 72-123 41-84 (89)
82 KOG0972 Huntingtin interacting 27.2 4.6E+02 0.01 23.5 9.5 26 75-100 308-333 (384)
83 PF05659 RPW8: Arabidopsis bro 26.9 3.1E+02 0.0067 21.4 7.2 50 20-69 95-144 (147)
84 PF10506 MCC-bdg_PDZ: PDZ doma 26.7 1.5E+02 0.0033 20.3 4.2 31 8-38 35-65 (67)
85 COG3334 Uncharacterized conser 26.6 3.7E+02 0.0081 22.2 9.4 37 52-88 110-147 (192)
86 PRK14149 heat shock protein Gr 26.4 96 0.0021 25.6 3.8 9 92-100 124-132 (191)
87 TIGR00293 prefoldin, archaeal 26.1 2.7E+02 0.0058 20.5 10.1 40 17-59 4-43 (126)
88 PF04012 PspA_IM30: PspA/IM30 25.4 3.7E+02 0.0079 21.8 9.9 86 11-96 97-189 (221)
89 TIGR02492 flgK_ends flagellar 25.3 3.4E+02 0.0073 23.6 7.3 71 52-125 137-208 (322)
90 COG1937 Uncharacterized protei 24.8 2.7E+02 0.0059 20.1 7.8 50 20-72 7-56 (89)
91 PRK14069 exodeoxyribonuclease 24.5 1.3E+02 0.0027 22.2 3.7 40 33-72 12-52 (95)
92 KOG1937 Uncharacterized conser 24.4 4.9E+02 0.011 24.7 8.2 48 56-104 385-432 (521)
93 PF05597 Phasin: Poly(hydroxya 24.4 2.1E+02 0.0045 22.1 5.1 32 92-124 94-125 (132)
94 PF11460 DUF3007: Protein of u 24.3 1.7E+02 0.0037 21.9 4.4 22 64-85 82-103 (104)
95 PRK06798 fliD flagellar cappin 24.2 4.1E+02 0.009 24.5 7.9 18 56-73 421-438 (440)
96 PRK14063 exodeoxyribonuclease 24.0 1.4E+02 0.0031 20.8 3.8 41 32-72 8-49 (76)
97 PRK10547 chemotaxis protein Ch 23.8 3.4E+02 0.0073 26.6 7.5 60 22-81 5-64 (670)
98 KOG4715 SWI/SNF-related matrix 23.7 5.2E+02 0.011 23.4 8.0 69 20-88 222-295 (410)
99 cd00446 GrpE GrpE is the adeni 23.5 3.1E+02 0.0066 20.7 6.0 11 90-100 71-81 (137)
100 PRK13423 F0F1 ATP synthase sub 23.2 3.3E+02 0.0072 23.4 6.8 34 37-70 3-37 (288)
101 TIGR00634 recN DNA repair prot 23.2 6.3E+02 0.014 23.8 11.1 13 55-67 250-262 (563)
102 PF09726 Macoilin: Transmembra 22.5 7.6E+02 0.016 24.4 10.3 32 17-48 543-574 (697)
103 TIGR00444 mazG MazG family pro 21.8 3.7E+02 0.0081 22.9 6.6 58 56-121 131-189 (248)
104 PF14389 Lzipper-MIP1: Leucine 21.3 3.1E+02 0.0068 19.5 6.6 51 75-125 15-71 (88)
105 PF03127 GAT: GAT domain; Int 20.9 2E+02 0.0044 20.5 4.2 73 39-124 7-80 (100)
106 PF10475 DUF2450: Protein of u 20.5 5.4E+02 0.012 21.9 10.5 73 17-89 106-178 (291)
107 PF08609 Fes1: Nucleotide exch 20.4 58 0.0013 23.5 1.2 26 25-50 66-91 (92)
108 PRK14140 heat shock protein Gr 20.2 3.7E+02 0.008 22.1 6.1 9 92-100 125-133 (191)
109 PF09728 Taxilin: Myosin-like 20.2 5.9E+02 0.013 22.3 12.3 101 11-122 49-149 (309)
110 PF03127 GAT: GAT domain; Int 20.2 2E+02 0.0043 20.6 4.0 48 74-121 3-50 (100)
111 PF11406 Tachystatin_A: Antimi 20.1 46 0.00099 20.5 0.5 11 168-178 13-23 (44)
112 PF05103 DivIVA: DivIVA protei 20.0 98 0.0021 22.8 2.5 37 62-98 8-44 (131)
113 PRK14148 heat shock protein Gr 20.0 1.8E+02 0.0038 24.1 4.2 9 92-100 128-136 (195)
No 1
>PTZ00464 SNF-7-like protein; Provisional
Probab=100.00 E-value=5.4e-37 Score=254.10 Aligned_cols=148 Identities=45% Similarity=0.750 Sum_probs=130.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel 84 (183)
++++++|++|+.|||+||+||++++++.++++||++++++|++++++++||+||+.|+++||++|++|++|+||++||+|
T Consensus 54 ~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei 133 (211)
T PTZ00464 54 MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDEL 133 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 030068 85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHA 158 (183)
Q Consensus 85 ~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~~~ 158 (183)
+|++++++||+++|++++++++++||+||++||++|+.|+..+ .+|||++..+ .+|+ -.||.+|...+
T Consensus 134 ~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e---~~~~~l~~~~--~~p~-~~~~~~~~~~~ 201 (211)
T PTZ00464 134 ADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKE---ADASYLADAL--AVPG-TKLPDVPTDEK 201 (211)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhcc---ccchhhhccc--cCCC-CCCCCCCCccc
Confidence 9999999999999999987767899999999999999987543 3599986431 1222 24555554443
No 2
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-36 Score=244.65 Aligned_cols=164 Identities=55% Similarity=0.838 Sum_probs=142.2
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Q 030068 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL 80 (183)
Q Consensus 1 ~~~g~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~l 80 (183)
||+||+++..|++|+++||+||+||+|.+.+++|.|||+|..+++++.++++.+|.|||.|++.||+.+++++||+|+++
T Consensus 52 ~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~Iedl 131 (218)
T KOG1655|consen 52 TRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDL 131 (218)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcc--ccc-cCCCCCCCCCCCCCccccCCCCCCCCCC
Q 030068 81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM--EDE-AGVPSYLQPDKEPDLDAELNLPTAPSGH 157 (183)
Q Consensus 81 mDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~--e~~-~~vps~l~~~~~~~~~~~~~lP~~P~~~ 157 (183)
.|+|.+.++..+||+++|+++|++| ++|++||++||++|.+|... +.. ...|||+.|+..| .+|.
T Consensus 132 QDem~Dlmd~a~EiQE~Lgr~y~~p-eide~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~---------~~~~-- 199 (218)
T KOG1655|consen 132 QDEMEDLMDQADEIQEVLGRNYNTP-DIDEADLDAELDALGQELDMLEEDENYLMPSYLAPANEP---------PAFI-- 199 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHhHhhcccccccccchhhhCCCCCC---------CCCc--
Confidence 9999999999999999999999997 49999999999999887432 221 3478887655321 2221
Q ss_pred CCCCCCCCCcccccCCCCcc
Q 030068 158 ASAQHDRPQAEDELGLPSVP 177 (183)
Q Consensus 158 ~~~~~~~~~~~de~~lp~~~ 177 (183)
......+.++++||||..|
T Consensus 200 -de~~~~~~~~~~~g~p~~~ 218 (218)
T KOG1655|consen 200 -DEENAEGAEVDEFGLPSGP 218 (218)
T ss_pred -ccccCCCccccccCCCCCC
Confidence 1112345678999999875
No 3
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=233.58 Aligned_cols=121 Identities=31% Similarity=0.400 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 9 ~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~ 88 (183)
+||+.|+.||||||+||+||.++.+.+.+|+.++.+||+|+.|.+|+.+|+.|+++||++|+.||||+|+++||+|+|+.
T Consensus 58 kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQq 137 (221)
T KOG1656|consen 58 KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQ 137 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q 030068 89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDE 129 (183)
Q Consensus 89 e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~ 129 (183)
+.++||++|||+|++++.++|||||++||++|+++..+.+.
T Consensus 138 e~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~l 178 (221)
T KOG1656|consen 138 EVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKEL 178 (221)
T ss_pred HHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988789999999999999998666554
No 4
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=100.00 E-value=6.6e-32 Score=220.34 Aligned_cols=120 Identities=23% Similarity=0.359 Sum_probs=112.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (183)
Q Consensus 6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~ 85 (183)
.++|+|++|++||||||+||++|+++.++++||++++++||++++|.+||.||++|+++||++|+.|++|+||++||+|+
T Consensus 61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~ 140 (191)
T PTZ00446 61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQ 140 (191)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068 86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (183)
Q Consensus 86 E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e 127 (183)
|++++++||+++|++++. +++||+||++||++|+++-.++
T Consensus 141 E~~e~~~EIseaLs~~~~--~~~DEdELe~ELe~Le~e~l~~ 180 (191)
T PTZ00446 141 ENKDIQEEINQALSFNLL--NNVDDDEIDKELDLLKEQTMEE 180 (191)
T ss_pred HHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999998643 4699999999999999875443
No 5
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=208.48 Aligned_cols=149 Identities=30% Similarity=0.440 Sum_probs=134.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel 84 (183)
.+|.|.|.+|+++||+||++|..|.++++|+.|||+++.+||++...+.|+++|++||.+||++|+.|++|.|++|||+.
T Consensus 49 lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt 128 (209)
T KOG2910|consen 49 LIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDT 128 (209)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc-cccCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 030068 85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME-DEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQ 161 (183)
Q Consensus 85 ~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e-~~~~vps~l~~~~~~~~~~~~~lP~~P~~~~~~~ 161 (183)
+|+++|++||+++|++.++. .|+++|++||++|+.+...+ ..|+|||.- |..|....+|.+|...|...
T Consensus 129 ~ea~~YQ~Ein~~L~~~ls~---~dEddi~~EldaLese~~~e~e~PevPs~e-----p~lPek~~~~~~~~k~~~~~ 198 (209)
T KOG2910|consen 129 QEAIEYQDEINAILSGSLSA---EDEDDILAELDALESELEVEAELPEVPSTE-----PELPEKEDLEDVPEKEPAAS 198 (209)
T ss_pred HHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHHHhhhhhhcCCCCCCC-----CCcccccccccccccccchh
Confidence 99999999999999998764 79999999999999987664 458888873 22334467888998877644
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.92 E-value=2.3e-25 Score=175.83 Aligned_cols=124 Identities=34% Similarity=0.479 Sum_probs=98.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel 84 (183)
..++|+|.+|+.|||++|.+++++.++.+++++|+++..+|+++..+..|+.+|+.|+++||++++.|++++|+++|++|
T Consensus 34 ~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~ 113 (171)
T PF03357_consen 34 AIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDF 113 (171)
T ss_dssp HHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 030068 85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMED 128 (183)
Q Consensus 85 ~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~ 128 (183)
.+.++.+++|+++|++.++..+++|++||++||++|..|...+.
T Consensus 114 ~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~ 157 (171)
T PF03357_consen 114 QEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE 157 (171)
T ss_dssp HHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999997743246899999999999999976543
No 7
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=9.9e-22 Score=175.11 Aligned_cols=122 Identities=21% Similarity=0.320 Sum_probs=114.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT-VKIQDIDNLQDE 83 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~-~~id~Ve~lmDe 83 (183)
+.|.|.|+.|+++||+||+.|+.++++..++.||++++.+|.+|++|+.|+.||+.|+.+||.+.+. .+.|+|+++||+
T Consensus 266 ~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Lde 345 (439)
T KOG2911|consen 266 ALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDE 345 (439)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999984 599999999999
Q ss_pred HHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030068 84 MMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126 (183)
Q Consensus 84 l~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~ 126 (183)
+.|.++.++||+++|+.+...+.+++|++||+||+.|+.+...
T Consensus 346 v~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k 388 (439)
T KOG2911|consen 346 VNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKK 388 (439)
T ss_pred HHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcccc
Confidence 9999999999999999876555689999999999999987554
No 8
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.1e-08 Score=83.85 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=98.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (183)
Q Consensus 6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~ 85 (183)
+|+|+-..++..-|.--+...++.++++...+|+.+...|++.+.+..+..+|+.++++|..+|+.||+-.+.+||-+++
T Consensus 50 AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFe 129 (224)
T KOG3230|consen 50 AKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFE 129 (224)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 34444333344444444455677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068 86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (183)
Q Consensus 86 E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e 127 (183)
.+.+.++.-.++|+..++ +.++++|=|+|-++|...+++|
T Consensus 130 kQse~Mdm~~Emm~daID--dal~~~edEEEtd~lvnqVLDE 169 (224)
T KOG3230|consen 130 KQSEIMDMKEEMMDDAID--DALGDDEDEEETDDLVNQVLDE 169 (224)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHH
Confidence 999999999999988654 3455566678899999887776
No 9
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00012 Score=60.69 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=108.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel 84 (183)
++|+|.+.-++.+-|.--...+...+++...-.|..+.+.+..+-....+...|+.++.+||.++.-+.+-.+-.+|-+|
T Consensus 51 aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrel 130 (227)
T KOG3229|consen 51 AAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMREL 130 (227)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56778888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhcCCCCC-CC-CCCHHHHHHHHHHHHHhhccccccCCCCC
Q 030068 85 MDLMDVSHEIQETLGRSYNV-PD-DIDEDELMGELDALEADMGMEDEAGVPSY 135 (183)
Q Consensus 85 ~E~~e~~~EI~eaL~~~~~~-~~-~~DedELe~EL~~L~~E~~~e~~~~vps~ 135 (183)
.-.+-+.--|.+++...+.. .+ +..+++.+.|.+.+.-++..+..+++|..
T Consensus 131 SkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 131 SKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcc
Confidence 99999999999988865432 11 12455666777777777666655555543
No 10
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00037 Score=56.20 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=83.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (183)
Q Consensus 6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~ 85 (183)
+..|++..++.+-|+--.+.+|-.++++....+..+..+-...+.+..+-.||-...+.|+.+|+.|+++++-..|-+++
T Consensus 49 Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ 128 (208)
T KOG3231|consen 49 AAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQ 128 (208)
T ss_pred HHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 44678888888888888899999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhcC
Q 030068 86 DLMDVSHEIQETLGR 100 (183)
Q Consensus 86 E~~e~~~EI~eaL~~ 100 (183)
-....++--.++|..
T Consensus 129 ~anmKMemTeEMiND 143 (208)
T KOG3231|consen 129 KANMKMEMTEEMIND 143 (208)
T ss_pred HHHHHhhhHHHHHHh
Confidence 888777665555554
No 11
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.83 E-value=0.00052 Score=57.27 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hH---HHHHHHHHHHHHHHhHHHHHHHhcC
Q 030068 25 EGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQ---DIDNLQDEMMDLMDVSHEIQETLGR 100 (183)
Q Consensus 25 E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~-id---~Ve~lmDel~E~~e~~~EI~eaL~~ 100 (183)
=+..-.+.+++.++..++++++......+....=.....+|+.-++.|. +- +||++ |++.+.+..+-+.++=|+.
T Consensus 67 LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~V-d~l~Dei~E~~e~~~EI~e 145 (211)
T PTZ00464 67 LQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKV-EDLQDELADLYEDTQEIQE 145 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777777777777777777766667777776655442 11 12222 3444444444445555555
Q ss_pred CCCCC
Q 030068 101 SYNVP 105 (183)
Q Consensus 101 ~~~~~ 105 (183)
.++.+
T Consensus 146 ~Ls~~ 150 (211)
T PTZ00464 146 IMGRA 150 (211)
T ss_pred HHhCC
Confidence 55543
No 12
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0086 Score=48.71 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhc
Q 030068 29 DMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLG 99 (183)
Q Consensus 29 ~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~ 99 (183)
-++......+..+...++++-....|-..|..-.+.|-+..+.||+++|-.+||.++-+.++.+--...|.
T Consensus 66 ~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me 136 (203)
T KOG3232|consen 66 VNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVME 136 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34455666778888899999999999999999999999999999999999999999999888776555543
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=96.59 E-value=0.096 Score=43.89 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=67.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNL-----------DQVAFASEGIKDAQQTMTALKSANKELKGMMKTV- 72 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nL-----------e~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~- 72 (183)
+..+|+-..|+.+|.+|+.|+.++..+..++... ..+...|+.++.-+.++.+=..++++.++++..+
T Consensus 78 Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~ 157 (222)
T PRK10698 78 ALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD 157 (222)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999998877766665544 4455667788888999998888999988888764
Q ss_pred --ChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068 73 --KIQDIDNLQDEMMDLMDVSHEIQETL 98 (183)
Q Consensus 73 --~id~Ve~lmDel~E~~e~~~EI~eaL 98 (183)
+.+.--.-++.|.+-++..+--.+++
T Consensus 158 ~~~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 158 SGKLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 43333334455666555555555555
No 14
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.59 E-value=0.087 Score=43.44 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=81.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLD-----------QVAFASEGIKDAQQTMTALKSANKELKGMMKT-- 71 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe-----------~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~-- 71 (183)
+.+.|+-..|..+|.+|+.|+.++..+..++.++. .+...|...+.....+.+-....++-++++..
T Consensus 77 Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~ 156 (221)
T PF04012_consen 77 ALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALA 156 (221)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999999888777766544 44555666777788888888888888877653
Q ss_pred -CChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 030068 72 -VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (183)
Q Consensus 72 -~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E 123 (183)
++++.....++.|.+.++..+--.++.....+ +...++++|++++..
T Consensus 157 ~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e~~l~~~~~~ 204 (221)
T PF04012_consen 157 SFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLEAELEELERD 204 (221)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHHHHHHHhcCC
Confidence 56667777777777777766666666654321 222377788777653
No 15
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.43 Score=39.66 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=75.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ChHHHHHHHHHHHHHH
Q 030068 14 AMRVLKQKRM-YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV----KIQDIDNLQDEMMDLM 88 (183)
Q Consensus 14 Al~~LkrKK~-~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~----~id~Ve~lmDel~E~~ 88 (183)
|..+||+|-+ .=+|.-.+.+|..+|.++.+.++.++...+-++--.....+||.-++.| .-=+|++| ++|++.|
T Consensus 57 aq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem 135 (218)
T KOG1655|consen 57 AQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEM 135 (218)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHH
Confidence 5566666654 3466777889999999999999999999999988888899999888765 33456665 4566666
Q ss_pred HhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068 89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (183)
Q Consensus 89 e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~ 122 (183)
++.=+..+=|...++..-+.-|.+..+.+.+|..
T Consensus 136 ~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELda 169 (218)
T KOG1655|consen 136 EDLMDQADEIQEVLGRNYNTPDIDEADLDAELDA 169 (218)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHH
Confidence 6555555555555665445556554444444544
No 16
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.61 E-value=0.27 Score=40.89 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=59.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQ-----------VAFASEGIKDAQQTMTALKSANKELKGMMKT-- 71 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~-----------~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~-- 71 (183)
+.++|+-..|+.+|.+|+.++.++..+..++..+.. +...|+.++....++.+=...+.+-+.++..
T Consensus 78 Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~ 157 (219)
T TIGR02977 78 ALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLD 157 (219)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999998877776665543 4444555666666665555566666666543
Q ss_pred -CChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068 72 -VKIQDIDNLQDEMMDLMDVSHEIQETL 98 (183)
Q Consensus 72 -~~id~Ve~lmDel~E~~e~~~EI~eaL 98 (183)
++.+.--..++.|.+-++..+--.+++
T Consensus 158 ~~~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 158 SGRSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455544455555555544444333343
No 17
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.98 Score=37.72 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKEL 65 (183)
Q Consensus 24 ~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aL 65 (183)
+...+.++..|++.||....+.|.........+|||..-+.|
T Consensus 80 idG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~m 121 (221)
T KOG1656|consen 80 IDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNM 121 (221)
T ss_pred HhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444444444444444444443333
No 18
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=94.28 E-value=1.9 Score=35.93 Aligned_cols=75 Identities=8% Similarity=0.064 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHhHHHHH
Q 030068 21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQDIDNLQDEMMDLMDVSHEIQ 95 (183)
Q Consensus 21 KK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~-id~Ve~lmDel~E~~e~~~EI~ 95 (183)
++.+-+.+-++..+.+.|...+..+++.......--+|.....-+......|+ +..|..+++.+.-+....+-..
T Consensus 37 ~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~ 112 (204)
T COG5491 37 RRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQ 112 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677777777777777777766666666666666666666666676 7778777776665554443333
No 19
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=92.83 E-value=0.32 Score=37.82 Aligned_cols=132 Identities=23% Similarity=0.240 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH--H
Q 030068 10 IKARAMRVLKQK-----RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ--D 82 (183)
Q Consensus 10 ~K~~Al~~LkrK-----K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lm--D 82 (183)
.+.+|+.++++. +.|=+.+-.+..++.++..+..+++......+.......-..+|+...+.|. ++..-+ +
T Consensus 27 ~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk--~~~~~i~~~ 104 (171)
T PF03357_consen 27 LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALK--KINKQINLD 104 (171)
T ss_dssp CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHH--HHHHSTTSC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhh
Confidence 456677777643 3566677788888899999999999999999988888888888887766542 333333 2
Q ss_pred HHHHHHHhHHHHHHH---hcCCCCCCCCCC--HHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCCC
Q 030068 83 EMMDLMDVSHEIQET---LGRSYNVPDDID--EDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGH 157 (183)
Q Consensus 83 el~E~~e~~~EI~ea---L~~~~~~~~~~D--edELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~~ 157 (183)
++.+.++...+..+- ++..++. .++ .+.-++||++...++..+...... + ...||++|+++
T Consensus 105 ~v~~~~d~~~e~~e~~~ei~~~l~~--~~~~~~~~dd~ele~eL~~l~~e~~~~~~----~--------~~~lp~~P~~~ 170 (171)
T PF03357_consen 105 KVEKLMDDFQEEMEDQDEISEALSD--SMDQVDDVDDEELEEELEQLEDEIEEEEE----E--------KQQLPSVPSTE 170 (171)
T ss_dssp CHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--------------SS-SS---HH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc--cccCCCCCCHHHHHHHHHHHHHHHhhhhh----c--------cccCCcCCCCC
Confidence 444444333333333 3333332 232 456677888877777766532211 0 13799999864
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=92.53 E-value=2.2 Score=35.17 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH-HHHHHHHHHHHHhHHH
Q 030068 15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDI-DNLQDEMMDLMDVSHE 93 (183)
Q Consensus 15 l~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~V-e~lmDel~E~~e~~~E 93 (183)
+.+=+..-.+..++.++..++++|+....+.+....-+...+|||..++-|. + =+||++ +++.+.+..+.+.++-
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~-i---dkVd~lmDei~E~~e~~~EIsea 152 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEIN-T---QKVEKIIDTIQENKDIQEEINQA 152 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777777777777777777776662 2 223333 3333444444555555
Q ss_pred HHHHh
Q 030068 94 IQETL 98 (183)
Q Consensus 94 I~eaL 98 (183)
|+.-+
T Consensus 153 Ls~~~ 157 (191)
T PTZ00446 153 LSFNL 157 (191)
T ss_pred HcCCC
Confidence 55443
No 21
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=6.2 Score=32.95 Aligned_cols=118 Identities=17% Similarity=0.329 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc-CChHHHHHHHH
Q 030068 9 AIKARAMRVLKQKRMYEGQ---RDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKG--MMKT-VKIQDIDNLQD 82 (183)
Q Consensus 9 ~~K~~Al~~LkrKK~~E~~---l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~--~~k~-~~id~Ve~lmD 82 (183)
.-|-.|+.+.|-|.+..+. ..++.+....++++..+-..++..+-+-+||..=|+.|.- +.+- +.+++--.+||
T Consensus 57 A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Md 136 (224)
T KOG3230|consen 57 AVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMD 136 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence 3577899999888877664 4578888889999999999999999999999999987753 3343 37888889999
Q ss_pred HHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc---cccCCCC
Q 030068 83 EMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME---DEAGVPS 134 (183)
Q Consensus 83 el~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e---~~~~vps 134 (183)
--.|.+. +-|+++|+. +.||+|-++=-+...+|+.-. +..+.|+
T Consensus 137 m~~Emm~--daIDdal~~------~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~ 183 (224)
T KOG3230|consen 137 MKEEMMD--DAIDDALGD------DEDEEETDDLVNQVLDEIGVDLASQLSSLPS 183 (224)
T ss_pred HHHHHHH--HHHHHhhcc------cchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence 8887765 457777763 356666666666666665432 2345565
No 22
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.54 E-value=12 Score=31.62 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=74.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQ-----------VAFASEGIKDAQQTMTALKSANKELKGMMK--- 70 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~-----------~~~~ie~a~~n~~vv~amk~g~~aLK~~~k--- 70 (183)
+..+|+-.-|..+|-++..||+++..+..++.++.. +-..|...+..+.++.+=....++-+++++
T Consensus 78 Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~ 157 (225)
T COG1842 78 ALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLG 157 (225)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778888999999999999988877666655443 334455666777777777777777666665
Q ss_pred cCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (183)
Q Consensus 71 ~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~ 122 (183)
.++.+.--..++.|++-++..+.-.++.+.-. . ...++|++||+.+..
T Consensus 158 ~~s~~sa~~~fer~e~kiee~ea~a~~~~el~-~---~~~~dl~~e~a~~~~ 205 (225)
T COG1842 158 GGSSSSAMAAFERMEEKIEEREARAEAAAELA-E---GSGDDLDKEFAQAGA 205 (225)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-c---cCcccHHHHHHHhcc
Confidence 45555555556666666666655555555310 0 123457778877765
No 23
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=86.29 E-value=15 Score=29.13 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHHHHHhHHHHHHHhc
Q 030068 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLG 99 (183)
Q Consensus 71 ~~~id~Ve~lmDel~E~~e~~~EI~eaL~ 99 (183)
...++.+|++.|.+.|..+.-+..-+.+.
T Consensus 85 ~~kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 85 RKKVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888888877665555555554
No 24
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=82.64 E-value=27 Score=29.08 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 030068 148 LNLPTAPSGHASAQHD 163 (183)
Q Consensus 148 ~~lP~~P~~~~~~~~~ 163 (183)
..+|++|++.|..|.+
T Consensus 169 ~e~PevPs~ep~lPek 184 (209)
T KOG2910|consen 169 AELPEVPSTEPELPEK 184 (209)
T ss_pred hhcCCCCCCCCCcccc
Confidence 3688999887765543
No 25
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=78.82 E-value=37 Score=28.33 Aligned_cols=100 Identities=11% Similarity=-0.020 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV----KIQDIDNLQDEMMDLMDVSHEIQETL 98 (183)
Q Consensus 23 ~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~----~id~Ve~lmDel~E~~e~~~EI~eaL 98 (183)
.+-++..+++..+..|+.....+........+...|..++..|..+..-. -++.+...|+-.+. .-+++.+.+
T Consensus 46 ~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~---~le~m~e~~ 122 (204)
T COG5491 46 KLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQL---RLETMDELM 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45667788888888998888888888888888888888888887553321 22233333333332 233555555
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030068 99 GRSYNVPDDIDEDELMGELDALEADMG 125 (183)
Q Consensus 99 ~~~~~~~~~~DedELe~EL~~L~~E~~ 125 (183)
.-..+.+...+.+++++++..+..|..
T Consensus 123 ~v~~~~~v~~~l~~lde~v~~v~pEi~ 149 (204)
T COG5491 123 DVVVGDPVLEDLEELDELVNKVLPEIG 149 (204)
T ss_pred ccCccchhhhhHHHHHHHHHhhchhhh
Confidence 543321122345555566665555543
No 26
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=77.83 E-value=23 Score=25.28 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCChHHH
Q 030068 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT-ALKSANKELKGMMKTVKIQDI 77 (183)
Q Consensus 16 ~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~-amk~g~~aLK~~~k~~~id~V 77 (183)
.+.|-++++..++++-...+..|.+.-.++...+....-+. .++.+.+.++++.+.--.|++
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~ 71 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRI 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45677889999999999999999999999998887766655 889999999988775444443
No 27
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=77.22 E-value=18 Score=25.55 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCC
Q 030068 24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSY 102 (183)
Q Consensus 24 ~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~ 102 (183)
+++.|+.+...-..++.+..+|+.+..+...|. .. ++.-..++|..-.-+-..+-.+++|..+-
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~-------------~~--~~~t~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQ-------------ET--VESTNTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 556666666666666666666666665555444 22 33455556666666677788888887654
No 28
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=71.27 E-value=9.2 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 13 RAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFA 44 (183)
Q Consensus 13 ~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ 44 (183)
.-..+|.+|+.+++.|..+..++..+|+.-..
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468889999999988888888888876665
No 29
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=68.60 E-value=43 Score=24.35 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHH
Q 030068 18 LKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQET 97 (183)
Q Consensus 18 LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~ea 97 (183)
+.+-..|++++..+..++..|+..+.-.+.+..... .+..+..+.+.+-..+=--.++++...+.+..+..+.--..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~---~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE---KLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777766665554443333 33356666666655433344555666666555554444444
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 98 LGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 98 L~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
+.. ..++++.++..+..++
T Consensus 82 l~~--------~~~~l~~~~~elk~~l 100 (105)
T cd00632 82 LER--------QEEDLQEKLKELQEKI 100 (105)
T ss_pred HHH--------HHHHHHHHHHHHHHHH
Confidence 433 2356777777777654
No 30
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.13 E-value=60 Score=23.82 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQE 96 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~e 96 (183)
.+.+-..+.+++..+..++..|+..+... ......++.+..+.++.+.+-+-+=.-+++++..++.+.++..+.--.
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~---~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEA---EKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666555444 445566667777888888886655345578888888877777765555
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 97 TLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 97 aL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
.+... .+.|...+.+++..+
T Consensus 85 ~lek~--------~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 85 TLQRQ--------EERLREQLKELQEKI 104 (110)
T ss_pred HHHHH--------HHHHHHHHHHHHHHH
Confidence 55432 245666776666653
No 31
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=61.51 E-value=54 Score=23.06 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT 56 (183)
Q Consensus 22 K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~ 56 (183)
..++...+.+.+...+++.+..+++++..=...+-
T Consensus 15 ~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~ 49 (78)
T PF08651_consen 15 PVIEGLIETLRSAKSNMNRVQETVESTNTLLDKWI 49 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665555554
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.08 E-value=1.5e+02 Score=28.05 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 030068 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQ------QTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDL 87 (183)
Q Consensus 14 Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~------~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~ 87 (183)
=+.+|-.+..|-.-+..+..++.+++......+....+- +++..++.....|+.+ +++|=.+..++...
T Consensus 153 rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~-----~~~iP~l~~~~~~~ 227 (569)
T PRK04778 153 RKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQI-----MEEIPELLKELQTE 227 (569)
T ss_pred HHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 334444444444455566666666666666655554443 3333444444444433 23333333333332
Q ss_pred H-HhH----HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030068 88 M-DVS----HEIQETLGRSYNVPDDIDEDELMGELDALEADMG 125 (183)
Q Consensus 88 ~-e~~----~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~ 125 (183)
. +.- .-..++...+|. ++..+++.++..|...+.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~----~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYH----LDHLDIEKEIQDLKEQID 266 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCC----CCCCChHHHHHHHHHHHH
Confidence 2 222 233445556664 456678888888887654
No 33
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.61 E-value=89 Score=23.68 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 13 RAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM 55 (183)
Q Consensus 13 ~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv 55 (183)
..-.++.+...|..+++.+..++..|...+..+..+......+
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l 49 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEEL 49 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556677788888888888888887777776665444433
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.82 E-value=2.4e+02 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhcCCCC
Q 030068 72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYN 103 (183)
Q Consensus 72 ~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~ 103 (183)
++.+.|..++++|++.++....|..+|+++.+
T Consensus 1508 ~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~ 1539 (1758)
T KOG0994|consen 1508 LTPEQIQQLTGEIQERVASLPNVDAILSRTKG 1539 (1758)
T ss_pred CCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh
Confidence 47788999999999999999999999988653
No 35
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=54.25 E-value=18 Score=21.53 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 030068 75 QDIDNLQDEMMDLMDVSH 92 (183)
Q Consensus 75 d~Ve~lmDel~E~~e~~~ 92 (183)
+.+++++|+|.+.++.+-
T Consensus 3 ~~~D~lLDeId~vLe~NA 20 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNA 20 (33)
T ss_pred chHHHHHHHHHHHHHHhH
Confidence 578888888888877654
No 36
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=53.92 E-value=34 Score=23.71 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030068 75 QDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMG 125 (183)
Q Consensus 75 d~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~ 125 (183)
+.|+.+-..|.......++|...-......+ .++.++..|++.|..++.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~--~~d~~~~~el~~l~~~i~ 55 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSP--DQDSELKRELDELTDEIK 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHHH
Confidence 3455555555555555555555444433222 133578888888887643
No 37
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=49.65 E-value=66 Score=23.71 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhHHH-HHH-HhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030068 75 QDIDNLQDEMMDLMDVSHE-IQE-TLGRSYNVPDDIDEDELMGELDALEADMGM 126 (183)
Q Consensus 75 d~Ve~lmDel~E~~e~~~E-I~e-aL~~~~~~~~~~DedELe~EL~~L~~E~~~ 126 (183)
+.|+.+.+.+....-...| |.. +|-.+++- -+|+|+||..++++|-.-+..
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiAlKAGLge-ieI~d~eL~~aFeeiAaRFR~ 62 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIALKAGLGE-IEIEEAELQAAFEELAKRFRG 62 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-cccCHHHHHHHHHHHHHHHhc
Confidence 4667777777766555444 333 33334332 479999999999999987653
No 38
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.07 E-value=1.7e+02 Score=24.14 Aligned_cols=103 Identities=7% Similarity=0.074 Sum_probs=61.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHH
Q 030068 16 RVLKQKRMYE---GQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSH 92 (183)
Q Consensus 16 ~~LkrKK~~E---~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~ 92 (183)
+++|+|-..- +.-.+++.....+++..-.-.-......||++|..+.+.|.-..=..-.|++|.-.+++.=+....
T Consensus 57 NAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~m- 135 (203)
T KOG3232|consen 57 NAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVM- 135 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHH-
Confidence 4455554433 344567777777777777777777888899999877666532111224578888887777665554
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 030068 93 EIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (183)
Q Consensus 93 EI~eaL~~~~~~~~~~DedELe~EL~~L~~E 123 (183)
..+++.+..+ ..+.++++.=+....+|
T Consensus 136 --e~~m~~st~l--~tpq~~Vd~Lmq~vADe 162 (203)
T KOG3232|consen 136 --EKAMSGSTAL--STPQGDVDSLMQQVADE 162 (203)
T ss_pred --HHhccCcccc--cCChhHHHHHHHHHHHH
Confidence 4677765443 24554444333333333
No 39
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=44.94 E-value=1.4e+02 Score=22.90 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030068 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGM 68 (183)
Q Consensus 16 ~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~ 68 (183)
.+.++...+..++..+...+..|..+...++.+.-+....+....|..++.++
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELSQQVLTLIQSL 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHhHHHHHHH
Confidence 35566777888888888888888888888888888888888877777776654
No 40
>COG1604 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=42.43 E-value=7.9 Score=33.30 Aligned_cols=13 Identities=46% Similarity=1.040 Sum_probs=11.8
Q ss_pred cCCCCcccccccC
Q 030068 171 LGLPSVPQASIRG 183 (183)
Q Consensus 171 ~~lp~~~~~~~~~ 183 (183)
||||.||.++|.|
T Consensus 106 ~glPyIPgS~iKG 118 (257)
T COG1604 106 YGLPYIPGSEIKG 118 (257)
T ss_pred cCCCcccchHHHH
Confidence 9999999998865
No 41
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=41.89 E-value=1.4e+02 Score=28.09 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 030068 52 QQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (183)
Q Consensus 52 ~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E 123 (183)
..+++-|.-+.+-+...-....++.||+++|..- +.++-+..-+.++... ...++++..+|..++.+-
T Consensus 133 s~iv~~l~~aa~~I~~~e~~~G~~~VE~~LDs~h---ai~~~~~~R~~rp~~~-s~~e~~~~~ee~~e~~~s 200 (495)
T COG2719 133 SDIVDYLEFAADYIAECEERHGVEEVERFLDSCH---AIMEYGVDRYKRPKKI-SSEEERARQEEREEYLQS 200 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH---HHHHhCchhhcCCccc-ccccchhhHHHHHHHhhc
Confidence 4678888888888888777799999999999876 5555666777776544 245666777777777653
No 42
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.83 E-value=1.3e+02 Score=21.87 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT 56 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~ 56 (183)
+..+...|+.++..+..++..+...+..++.+......+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788999999999999999999998888776666554
No 43
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=41.70 E-value=28 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccC
Q 030068 32 YNQTFNLDQVAFASEGIKDA-QQTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 32 ~~~l~nLe~~~~~ie~a~~n-~~vv~amk~g~~aLK~~~k~~ 72 (183)
...+..|++++..+++-... -+.+..|+.|.+.+|..++.+
T Consensus 9 Ee~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L 50 (75)
T PRK14064 9 EEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKL 50 (75)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443 257788999999988876655
No 44
>PRK05560 DNA gyrase subunit A; Validated
Probab=40.96 E-value=3.8e+02 Score=26.75 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCC
Q 030068 35 TFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (183)
Q Consensus 35 l~nLe~~~~~ie~a~~n~~vv~amk~--------g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~ 106 (183)
..++..++.-|.++....++...|.. +...|.--...++-.+++++..++.+.....+++...|+..--
T Consensus 382 ~~~~d~vI~iir~s~~~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~--- 458 (805)
T PRK05560 382 LDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPER--- 458 (805)
T ss_pred HHhhHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---
Confidence 45555666666666666666655544 2222222234567778999999999999999999999986421
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 030068 107 DIDEDELMGELDALEADMGM 126 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~ 126 (183)
+ ..-+-.||.++.....+
T Consensus 459 -l-~~~i~~EL~~ikkkfg~ 476 (805)
T PRK05560 459 -L-LEIIKEELLEIKEKFGD 476 (805)
T ss_pred -H-HHHHHHHHHHHHHHhCC
Confidence 1 23567788888876554
No 45
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.37 E-value=2.4e+02 Score=24.19 Aligned_cols=88 Identities=8% Similarity=0.120 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHhhccCChHHHHHHHHHHHHHHHhH
Q 030068 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT-ALKS-ANKELKGMMKTVKIQDIDNLQDEMMDLMDVS 91 (183)
Q Consensus 14 Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~-amk~-g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~ 91 (183)
+..++++-..+-+.+.++..-...|......+.+.+.+...++ .+.. |-.+++...+.-++.++.+.+..|....+..
T Consensus 52 ~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~ 131 (291)
T PF10475_consen 52 SREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQ 131 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666666666666666666555554 2233 5566666666667778888888888888888
Q ss_pred HHHHHHhcCC
Q 030068 92 HEIQETLGRS 101 (183)
Q Consensus 92 ~EI~eaL~~~ 101 (183)
..|+.+|+.+
T Consensus 132 ~~l~~ll~~~ 141 (291)
T PF10475_consen 132 SRLQELLEEG 141 (291)
T ss_pred HHHHHHHhcC
Confidence 8888888753
No 46
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.85 E-value=3.9e+02 Score=26.50 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCC
Q 030068 35 TFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (183)
Q Consensus 35 l~nLe~~~~~ie~a~~n~~vv~amk~--------g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~ 106 (183)
+.+++.++.-|.++....++...|.. +...|.--...+.-.+++++..++.+.....+++..+|+....
T Consensus 379 ~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~--- 455 (738)
T TIGR01061 379 ISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKA--- 455 (738)
T ss_pred HHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---
Confidence 33444555555444444444444433 2222222234577778899999999999999999999986421
Q ss_pred CCCHHHHHHHHHHHHHhhccc
Q 030068 107 DIDEDELMGELDALEADMGME 127 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~e 127 (183)
=..-+-+||.++.....++
T Consensus 456 --~~~~i~~el~~ik~kfg~~ 474 (738)
T TIGR01061 456 --RNKLLKKQLEEYKKQFAQQ 474 (738)
T ss_pred --HHHHHHHHHHHHHHHhCCC
Confidence 2345778888888766543
No 47
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=39.58 E-value=1e+02 Score=28.38 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 030068 11 KARAMRVLKQKRMYEGQR------------DMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK 73 (183)
Q Consensus 11 K~~Al~~LkrKK~~E~~l------------~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~ 73 (183)
-+||+.|||.|++..... -+.++.+.+-..-+..++.|+-+-+.+=+|.--+..||+++..++
T Consensus 135 ~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 135 INRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 478999999999865433 355666666677778888899999999899888899998877663
No 48
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=38.63 E-value=1.6e+02 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHhhccc
Q 030068 107 DIDEDELMGELDALEADMGME 127 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~e 127 (183)
+|+|+||..+++++-..+...
T Consensus 42 eI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 42 EISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred cCCHHHHHHHHHHHHHHHhcc
Confidence 378889999999998876544
No 49
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=73 Score=26.08 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=5.1
Q ss_pred HHHHHHHhcC
Q 030068 91 SHEIQETLGR 100 (183)
Q Consensus 91 ~~EI~eaL~~ 100 (183)
.+.+..+|..
T Consensus 124 ~~~l~~~L~k 133 (193)
T COG0576 124 LDQLLDALEK 133 (193)
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 50
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=37.42 E-value=51 Score=22.12 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDML 31 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~ 31 (183)
+.++|+-.+|+.+||-=|.|+..|...
T Consensus 18 AK~~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 18 AKRAGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred HHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence 345677777777777777777666543
No 51
>PRK14127 cell division protein GpsB; Provisional
Probab=37.28 E-value=71 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=22.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHhH
Q 030068 62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVS 91 (183)
Q Consensus 62 ~~aLK~~~k~~~id~Ve~lmDel~E~~e~~ 91 (183)
++..+.-..+.+.+.|+..+|++.+..+..
T Consensus 13 ~KeF~~~~RGYd~~EVD~FLd~V~~dye~l 42 (109)
T PRK14127 13 EKEFKTSMRGYDQDEVDKFLDDVIKDYEAF 42 (109)
T ss_pred hCccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555556889999999999998655443
No 52
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=36.93 E-value=40 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 38 LDQVAFASEGIKDAQQTMTALKSANKEL 65 (183)
Q Consensus 38 Le~~~~~ie~a~~n~~vv~amk~g~~aL 65 (183)
+.+.+..+-...++.+|+.+|+.++.-+
T Consensus 12 ~~~~~~~~~~~~~~~Ev~~aik~~sd~~ 39 (155)
T PF07464_consen 12 FQEQVNKLLGSQNQQEVVKAIKEQSDSV 39 (155)
T ss_dssp HHHHHHHHTSS--SS-SSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHHHH
Confidence 3344444444455566666666665544
No 53
>PHA03185 UL14 tegument protein; Provisional
Probab=34.71 E-value=2.8e+02 Score=23.29 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHhhccccc
Q 030068 107 DIDEDELMGELDALEADMGMEDE 129 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~e~~ 129 (183)
+.+++++..+=++|.-.+..+..
T Consensus 135 ~~~~~wl~e~DEaLLt~W~Le~a 157 (214)
T PHA03185 135 DPADGWMSPEDSDLLIMWQLGSA 157 (214)
T ss_pred CcccccccccHHHHHHHHHHhcC
Confidence 34666777777788877655544
No 54
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=34.63 E-value=84 Score=24.95 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=42.3
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 4 GPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT 56 (183)
Q Consensus 4 g~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~ 56 (183)
+..+...++.....+..+-..++........+.+|+++...|.++.+-+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~i~~L~~~i~~a~d~K~~~D 156 (195)
T PF07996_consen 104 DSRNQICQRQQNSAAQDKAFAEQAYKQAEQRLEQIQQLMQQINSAKDPKEIAD 156 (195)
T ss_dssp TTHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 44566677788888888999999999999999999999999999988777665
No 55
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.61 E-value=2.2e+02 Score=22.09 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 030068 15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGI-KDAQQTMTALKSANKELKGM 68 (183)
Q Consensus 15 l~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a-~~n~~vv~amk~g~~aLK~~ 68 (183)
-.++++++.+|.+|.-...++.-|+.-+..++.+ ......+..|+...+++...
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998888888888877777744 44456666666666666554
No 56
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=34.47 E-value=4.8e+02 Score=26.04 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh-hccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCC
Q 030068 35 TFNLDQVAFASEGIKDAQQTMTALKSA-------NKELKGM-MKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (183)
Q Consensus 35 l~nLe~~~~~ie~a~~n~~vv~amk~g-------~~aLK~~-~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~ 106 (183)
..++..++.-|.++....++...|... +.++=.+ ...++-.+++++..++.+..+..+++..+|+..-
T Consensus 379 ~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~---- 454 (800)
T TIGR01063 379 LDNIDEVIALIRASQNTEEAKTRLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEE---- 454 (800)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence 444455555555555555555555431 2222222 2456667899999999999999999999998631
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 030068 107 DIDEDELMGELDALEADMGM 126 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~ 126 (183)
.=..-|-+||.++.....+
T Consensus 455 -~l~~vi~~EL~eikkkfg~ 473 (800)
T TIGR01063 455 -RVLEIIREELEEIKEQFGD 473 (800)
T ss_pred -HHHHHHHHHHHHHHHHhCC
Confidence 1123467788888876553
No 57
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=34.25 E-value=3e+02 Score=26.91 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-----------------HHhhccCChHHHH
Q 030068 24 YEGQRDMLYNQTF--NLDQVAFA------SEGIKDAQQTMTALKSANKEL-----------------KGMMKTVKIQDID 78 (183)
Q Consensus 24 ~E~~l~~~~~~l~--nLe~~~~~------ie~a~~n~~vv~amk~g~~aL-----------------K~~~k~~~id~Ve 78 (183)
++-.|.++...++ .||.+... |+.+.....++.+...+.... .--...++--+++
T Consensus 328 ~~~~l~k~~~r~h~~~legl~i~~~i~~~i~~~~~~~~v~~~i~~~~~~~~~~l~~~~t~~qa~ail~mrl~rlt~~e~~ 407 (635)
T PRK09631 328 LELERAKLLEKIFAKTLEQIFIEERIYKRIETISSEEDVISIVLSELKPFKEELSRDVTEEDIENLLKIPIRRISLFDID 407 (635)
T ss_pred HHHHHHHHHHHhhHHHhhhHHhhhhHHHHHHhhcCHHHHHHHHHhccchhhHhhhcCCCHHHHHHHHHhHHHHHhhhhHH
Confidence 3345666666666 57776654 445555556666665443221 1112234444555
Q ss_pred HHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030068 79 NLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126 (183)
Q Consensus 79 ~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~ 126 (183)
++..++++......++...|+. . -+=+-.||.+|.....+
T Consensus 408 k~~~e~~~l~~~i~~~~~~L~~-~-------~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 408 KNQKEIRILNKELKSVEKNLKS-I-------KGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHhCC
Confidence 5666666666666677777765 1 12356778887776654
No 58
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=33.92 E-value=4.3e+02 Score=25.29 Aligned_cols=70 Identities=16% Similarity=0.327 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 52 QQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 52 ~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
..++++++.....|+++.+.++ .+|....+++......-.+++..|.+....+ -+=.+|.+.=+.|..++
T Consensus 141 ~~l~~~in~~~~~L~~l~~~i~-~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g--~~~NdLlDqRD~Lv~eL 210 (552)
T COG1256 141 QTLVNQINNTYEQLTDLRKDIN-AEIAATVDEVNSLLKQIADLNKQIRKVKAAG--NDPNDLLDQRDQLVDEL 210 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHH
Confidence 4455666666677777666554 3444555555555555555555554432222 12234555555555543
No 59
>PRK10869 recombination and repair protein; Provisional
Probab=33.62 E-value=4.2e+02 Score=25.10 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 030068 55 MTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100 (183)
Q Consensus 55 v~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~ 100 (183)
+..+..+...|..+ ..++ +.+..+.+.+.+.....+++...|..
T Consensus 243 ~~~l~~~~~~l~~~-~~~d-~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 243 LSQLYSAKQLLSEL-IGMD-SKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHH-hhhC-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555444 2233 34455555555555555555555543
No 60
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=33.33 E-value=2.7e+02 Score=22.84 Aligned_cols=68 Identities=7% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 030068 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKD----AQQTMTALKSANKELKGMMKTVKIQDIDNLQDE 83 (183)
Q Consensus 16 ~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~----n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDe 83 (183)
.+=.....+..++.++..++..|+.-+......+. -.....+-+..+..+..+...=..+.++.+.+-
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 33344445556666666666666666655555544 344556666666666665544344444444444
No 61
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.83 E-value=3.4e+02 Score=23.81 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--ccCChHHHHHHHHH
Q 030068 15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDA-QQTMTALKSANKELKGMM--KTVKIQDIDNLQDE 83 (183)
Q Consensus 15 l~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n-~~vv~amk~g~~aLK~~~--k~~~id~Ve~lmDe 83 (183)
...-+-|-.++.+..+.+.|...|+.=+.+....+.+ ...+.-|.++|..|...- ..+++++++.-++.
T Consensus 73 ~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnq 144 (333)
T KOG1853|consen 73 TEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQ 144 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHH
Confidence 3445566667777777777777777666665554443 456678888888887653 23577777665543
No 62
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=32.82 E-value=1.7e+02 Score=21.45 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Q 030068 35 TFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQD 76 (183)
Q Consensus 35 l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~ 76 (183)
+..|+..+..+..-.-..++..+=+-|.-+||.-..+|+|++
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d 45 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISD 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCH
Confidence 345566666666666666777777778888877777765544
No 63
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.38 E-value=2.3e+02 Score=26.27 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHh-hccCChHHHHHHHHHHHHHHH
Q 030068 64 ELKGM-MKTVKIQDIDNLQDEMMDLMD 89 (183)
Q Consensus 64 aLK~~-~k~~~id~Ve~lmDel~E~~e 89 (183)
.|+++ |.+|+.+-|++++|+|.--++
T Consensus 153 i~~~l~n~~~~pe~v~~~q~di~yyve 179 (548)
T COG5665 153 ILKKLQNNEMDPEPVEEFQDDIKYYVE 179 (548)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHhh
Confidence 45665 467999999999998864443
No 64
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=32.22 E-value=1.6e+02 Score=20.68 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030068 21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT 71 (183)
Q Consensus 21 KK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~ 71 (183)
|+.+-+.|.++.+|+.-++.|+ +.=..-.+|+..+.+...+|.++...
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Mi---ee~~~C~dIl~Qi~Av~~Al~~~~~~ 51 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMI---EEDRDCEDILQQIAAVRSALDKVGKL 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HTTE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665555554 55566677888888888888765443
No 65
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.14 E-value=94 Score=24.92 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHHHHH
Q 030068 106 DDIDEDELMGELDALE 121 (183)
Q Consensus 106 ~~~DedELe~EL~~L~ 121 (183)
++.|||+|+.+++.+.
T Consensus 149 ~dddEdDl~~~~~q~D 164 (169)
T COG3078 149 YDDDEDDLERDEKQED 164 (169)
T ss_pred cCCchHHHHHHHHHHH
Confidence 3467888888877654
No 66
>PRK14162 heat shock protein GrpE; Provisional
Probab=32.00 E-value=79 Score=26.10 Aligned_cols=9 Identities=11% Similarity=0.243 Sum_probs=4.2
Q ss_pred HHHHHHhcC
Q 030068 92 HEIQETLGR 100 (183)
Q Consensus 92 ~EI~eaL~~ 100 (183)
+.+..+|..
T Consensus 127 k~l~~vL~~ 135 (194)
T PRK14162 127 DHLVKALKD 135 (194)
T ss_pred HHHHHHHHH
Confidence 444455543
No 67
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.99 E-value=55 Score=22.61 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030068 37 NLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 37 nLe~~~~~ie~a~~n~-~vv~amk~g~~aLK~~~k~~ 72 (183)
.|++++..+|+-.... +.+..|+.|.+.+|..++.+
T Consensus 3 ~LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L 39 (69)
T PRK14070 3 ELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEIL 39 (69)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777765553 57788999999998887765
No 68
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.54 E-value=2.5e+02 Score=22.12 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALK 59 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk 59 (183)
+.....+|+.+++-+..++..|...+..+.++..+...++...
T Consensus 11 l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 11 LAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456778899999999999999988888887766666555544
No 69
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=31.52 E-value=4.7e+02 Score=26.23 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=53.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhccCChHHHHH
Q 030068 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS------ANKELKGMMKTVKIQDIDN 79 (183)
Q Consensus 6 ~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~------g~~aLK~~~k~~~id~Ve~ 79 (183)
.+...|+.-+..+.-+.++++.+.-+...+..++ +...|. ..|=+.|.. =+..||.|++++..++ ++
T Consensus 176 ~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~-~ek~I~-----~kVk~~meK~QREyyL~EQlKaIqkELG~~~-d~ 248 (782)
T COG0466 176 LKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQ-LEKRIR-----KKVKEQMEKSQREYYLREQLKAIQKELGEDD-DD 248 (782)
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cc
Confidence 4566788888888888888888888777776432 222221 222222222 2456777777776554 11
Q ss_pred HHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068 80 LQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (183)
Q Consensus 80 lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~ 122 (183)
- +++.+-. +-|.. ..++.++ -+.+++||+.|+.
T Consensus 249 ~-~e~~~~~-------~kie~-~~~p~ev-k~k~~~El~kL~~ 281 (782)
T COG0466 249 K-DEVEELR-------EKIEK-LKLPKEA-KEKAEKELKKLET 281 (782)
T ss_pred h-hHHHHHH-------HHHhh-cCCCHHH-HHHHHHHHHHHhc
Confidence 1 2222222 22221 1233222 3457888888876
No 70
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=30.54 E-value=4e+02 Score=24.70 Aligned_cols=90 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHhH
Q 030068 15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV---KIQDIDNLQDEMMDLMDVS 91 (183)
Q Consensus 15 l~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~---~id~Ve~lmDel~E~~e~~ 91 (183)
+.+++||+.| .+.++...+.-++..+..|+..- .+++..+.+..+-+.+.+.+ ++++. ..
T Consensus 329 ~~~~~rR~~~--~l~k~~~rl~il~g~~~~i~~id---~vi~~ir~s~~ak~~L~~~l~~~~~~~~------------qa 391 (445)
T cd00187 329 LEVYTRRKEY--ELGKAEARLHILEGLLKAILNID---EVINLIRSSDEAKKALIEELEKLGFSEI------------QA 391 (445)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHhcCCCHH------------HH
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 92 HEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 92 ~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
+-|-++==+..+. .+-+.|.+|+++|..++
T Consensus 392 ~~IL~m~L~~LT~---~e~~kL~~E~~~l~~ei 421 (445)
T cd00187 392 DAILDMRLRRLTK---LEREKLLKELKELEAEI 421 (445)
T ss_pred HHHHHhHHHHhhh---hHHHHHHHHHHHHHHHH
No 71
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=29.89 E-value=1.5e+02 Score=18.82 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030068 34 QTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 34 ~l~nLe~~~~~ie~a~~n~-~vv~amk~g~~aLK~~~k~~ 72 (183)
.+..|++++..+++-.... +.+.-|+.|.+.++..++.+
T Consensus 4 ~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L 43 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERL 43 (53)
T ss_dssp HHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666544442 45667778887777765543
No 72
>PRK14146 heat shock protein GrpE; Provisional
Probab=29.41 E-value=85 Score=26.28 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 030068 92 HEIQETLG 99 (183)
Q Consensus 92 ~EI~eaL~ 99 (183)
..+..+|.
T Consensus 142 k~l~~~L~ 149 (215)
T PRK14146 142 KEFYSVLE 149 (215)
T ss_pred HHHHHHHH
Confidence 33444444
No 73
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=29.30 E-value=1.2e+02 Score=19.32 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 030068 38 LDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (183)
Q Consensus 38 Le~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~ 85 (183)
+.+.+.++..++.+.+++ |+.+-+..-|+++... ..+++.+++++.
T Consensus 2 vkq~lAslK~~qA~Le~f-al~T~d~~AK~~y~~~-a~~l~~ii~~L~ 47 (50)
T PF07870_consen 2 VKQTLASLKKAQADLETF-ALQTQDQEAKQMYEQA-AQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHHHHHhhHHHH-HhhcCCHHHHHHHHHH-HHHHHHHHHHhH
Confidence 445566677777766665 4566666666666543 345555555543
No 74
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.21 E-value=3.1e+02 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030068 36 FNLDQVAFASEGIKDAQQTMTALKSANKELKGM 68 (183)
Q Consensus 36 ~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~ 68 (183)
.+|+.++.-+++.+........+..-++.|+.-
T Consensus 80 ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e 112 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNPSDQALQKENERLKNQ 112 (161)
T ss_pred CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 445555555555554444444444444444443
No 75
>PRK10807 paraquat-inducible protein B; Provisional
Probab=28.95 E-value=5.1e+02 Score=24.62 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 030068 56 TALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100 (183)
Q Consensus 56 ~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~ 100 (183)
.++++.+.++..+++-+..+.+..+..+++. ...+++.+|..
T Consensus 450 ~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~---TL~~l~~~l~~ 491 (547)
T PRK10807 450 RTMRELQTTLDSLNKITSSQSMQQLPADMQK---TLRELNRSMQG 491 (547)
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 4556666666666555555666666666654 44556666664
No 76
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.81 E-value=63 Score=22.65 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccC
Q 030068 32 YNQTFNLDQVAFASEGIKDA-QQTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 32 ~~~l~nLe~~~~~ie~a~~n-~~vv~amk~g~~aLK~~~k~~ 72 (183)
...+..|++++..+++-... -+.+..|+.|.+.++..++.+
T Consensus 9 Eeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L 50 (76)
T PRK14068 9 EEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTL 50 (76)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556665555443 257788899999888876654
No 77
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=28.13 E-value=1.9e+02 Score=19.48 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 030068 54 TMTALKSANKELKGMMKTVK 73 (183)
Q Consensus 54 vv~amk~g~~aLK~~~k~~~ 73 (183)
+..-|+.+...|..+-+...
T Consensus 41 ~a~~L~~A~~~L~~ItG~~~ 60 (73)
T PF12631_consen 41 VAEDLREALESLGEITGEVV 60 (73)
T ss_dssp HHHHHHHHHHHHHHHCTSS-
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 44466677777766665543
No 78
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.12 E-value=1e+02 Score=21.70 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030068 33 NQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 33 ~~l~nLe~~~~~ie~a~~n~-~vv~amk~g~~aLK~~~k~~ 72 (183)
..+..|++++..+++-.... +.+..|+.|.+.++..++.+
T Consensus 14 ea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L 54 (80)
T PRK00977 14 EALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKL 54 (80)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555443332 56778888888888776554
No 79
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.85 E-value=3.7e+02 Score=24.03 Aligned_cols=46 Identities=9% Similarity=0.286 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068 73 KIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (183)
Q Consensus 73 ~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~ 122 (183)
.+..++..+.+|...+...++.-.-+...+. -...-+..-+..|+.
T Consensus 337 ~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~----~N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 337 TLSELESQQSDLQSQLKKWEELLNKVEEKFK----ENMETIEKNVKKLEE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3555666666666555555444443333221 122334555555544
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.75 E-value=5.7e+02 Score=24.77 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHh--hccCChHHHHHHHHH
Q 030068 15 MRVLKQKRM-YEGQRDMLYNQTFNLDQVAFASEGIKDA----Q----QTMTALKSANKELKGM--MKTVKIQDIDNLQDE 83 (183)
Q Consensus 15 l~~LkrKK~-~E~~l~~~~~~l~nLe~~~~~ie~a~~n----~----~vv~amk~g~~aLK~~--~k~~~id~Ve~lmDe 83 (183)
...||.|+. ++.-+.+..+...++++-....+..... . .=.+.++.-++-||++ ++++++.+|+.+--+
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~E 340 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLE 340 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 445666555 6666666666666555444433332211 1 1235667777777775 357999999999887
Q ss_pred HHHHHHhHHHHHHHhc
Q 030068 84 MMDLMDVSHEIQETLG 99 (183)
Q Consensus 84 l~E~~e~~~EI~eaL~ 99 (183)
-.+....-+.|+-.+.
T Consensus 341 r~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 341 RNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766666665554
No 81
>PHA02698 hypothetical protein; Provisional
Probab=27.26 E-value=1.8e+02 Score=20.71 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 030068 72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (183)
Q Consensus 72 ~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E 123 (183)
-+.+++-+++|.+-|-+.+..|.+= |++ ..-+||..||+.|..-
T Consensus 41 CsPEdMs~mLD~FLediq~ksElqL-Lsq-------EEMdELl~EledlarL 84 (89)
T PHA02698 41 CSPEDMSDMLDNFLEDIQYKSELQL-LSQ-------EEMDELLVELEDLARL 84 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-hhH-------HHHHHHHHHHHHHHHH
Confidence 4678888888999888888888763 443 3456888888888653
No 82
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.19 E-value=4.6e+02 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcC
Q 030068 75 QDIDNLQDEMMDLMDVSHEIQETLGR 100 (183)
Q Consensus 75 d~Ve~lmDel~E~~e~~~EI~eaL~~ 100 (183)
..++.+|++++-..+.++|-...++.
T Consensus 308 ~~L~eVm~e~E~~KqemEe~G~~msD 333 (384)
T KOG0972|consen 308 ETLDEVMDEIEQLKQEMEEQGAKMSD 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34555666666555555555555554
No 83
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.92 E-value=3.1e+02 Score=21.41 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030068 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMM 69 (183)
Q Consensus 20 rKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~ 69 (183)
+|-.|.+.+.+++..+..+-++...++...+.+++..-|..-++-|+.+.
T Consensus 95 kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~i~ 144 (147)
T PF05659_consen 95 KKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDDIT 144 (147)
T ss_pred hhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45568888888888888888888888888888888888887777776654
No 84
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=26.73 E-value=1.5e+02 Score=20.34 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFNL 38 (183)
Q Consensus 8 ~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nL 38 (183)
-|+.+.+..+||-++.|......+++++..|
T Consensus 35 lgk~es~~~alrlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 35 LGKYESNATALRLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777788888888888888888887665
No 85
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=3.7e+02 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHH-HHHhhccCChHHHHHHHHHHHHHH
Q 030068 52 QQTMTALKSANKE-LKGMMKTVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 52 ~~vv~amk~g~~a-LK~~~k~~~id~Ve~lmDel~E~~ 88 (183)
.+-+-..+++-.- |.++|++|..++.-.+|..+.++.
T Consensus 110 re~~l~~~qae~~klv~iY~~Mkp~~aA~~le~l~~e~ 147 (192)
T COG3334 110 REGILRSKQAEDGKLVKIYSKMKPDAAAAILENLPDEE 147 (192)
T ss_pred HHHHHHHHHhhhhHHHHHHHcCChhhHHHHHHcCCHHH
Confidence 3333333444444 778888999999888887776544
No 86
>PRK14149 heat shock protein GrpE; Provisional
Probab=26.39 E-value=96 Score=25.56 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=4.3
Q ss_pred HHHHHHhcC
Q 030068 92 HEIQETLGR 100 (183)
Q Consensus 92 ~EI~eaL~~ 100 (183)
+.+..+|..
T Consensus 124 k~l~~vL~k 132 (191)
T PRK14149 124 EKLHEVLAR 132 (191)
T ss_pred HHHHHHHHH
Confidence 444455543
No 87
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.12 E-value=2.7e+02 Score=20.46 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALK 59 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk 59 (183)
+..+...|+.+++.+..++..|...+..++.+. ++++.++
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~---~~L~~l~ 43 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAI---ETLEDLK 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcc
Confidence 445677788888888888888877777776654 4444443
No 88
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.36 E-value=3.7e+02 Score=21.76 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CChHHHHHHHHH
Q 030068 11 KARAMRVLKQKRMYEGQRDMLYNQTFNL----DQVAFASEGIKDAQQTMTALKSANKELKGMMKT---VKIQDIDNLQDE 83 (183)
Q Consensus 11 K~~Al~~LkrKK~~E~~l~~~~~~l~nL----e~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~---~~id~Ve~lmDe 83 (183)
...+-.+-..-..+..+++++..++..+ ..+....+.......+..+-+..+.++..+... -.++.+++=++.
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~ 176 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHH
Confidence 3344444444455555555555555444 444445555566666777777777777766532 256666666666
Q ss_pred HHHHHHhHHHHHH
Q 030068 84 MMDLMDVSHEIQE 96 (183)
Q Consensus 84 l~E~~e~~~EI~e 96 (183)
+....+-..++.+
T Consensus 177 ~ea~a~a~~el~~ 189 (221)
T PF04012_consen 177 MEARAEASAELAD 189 (221)
T ss_pred HHHHHHHHHHhcc
Confidence 6666666666663
No 89
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=25.34 E-value=3.4e+02 Score=23.63 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCC-CCCCCCHHHHHHHHHHHHHhhc
Q 030068 52 QQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYN-VPDDIDEDELMGELDALEADMG 125 (183)
Q Consensus 52 ~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~-~~~~~DedELe~EL~~L~~E~~ 125 (183)
..++..++.....|..+...++ ++|....+++......-.+|+.-|..... .+ -+-.+|.++-+.|..++.
T Consensus 137 ~~l~~~~n~~~~~L~~~~~~~~-~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g--~~~n~L~DqRD~ll~~LS 208 (322)
T TIGR02492 137 QALANSFNQTSNELQDLRKGIN-AEIKSAVTEINSLLKQIASLNKEIQQVEAKSG--QDANDLLDQRDLLLKELS 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchHhHHHHHHHHHHHH
Confidence 3445566666666666655443 34445555555554444444444432111 11 123346666666666543
No 90
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.77 E-value=2.7e+02 Score=20.09 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030068 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 20 rKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~ 72 (183)
.||.+-+.|.++.+|+.-+ ...||.-+.=.+|+..+.+...+|+.+...+
T Consensus 7 ~kkkl~~RlrRi~GQv~gI---~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~v 56 (89)
T COG1937 7 EKKKLLNRLRRIEGQVRGI---ERMLEEDRDCIDVLQQIAAVRGALNGLMREV 56 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666665444 4445556666788888888888887765544
No 91
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.53 E-value=1.3e+02 Score=22.17 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030068 33 NQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 33 ~~l~nLe~~~~~ie~a~~n~-~vv~amk~g~~aLK~~~k~~ 72 (183)
..+..|++++..||+-.... +.+..|+.|.+.+|..++.+
T Consensus 12 eal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L 52 (95)
T PRK14069 12 DALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGIL 52 (95)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544432 56778888888888776554
No 92
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=4.9e+02 Score=24.65 Aligned_cols=48 Identities=27% Similarity=0.381 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCC
Q 030068 56 TALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNV 104 (183)
Q Consensus 56 ~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~ 104 (183)
.+|-++.+.+-..-.+. -.+|-+|+++.++..-.-+-+++.|.+++.+
T Consensus 385 k~ytqrikEi~gniRKq-~~DI~Kil~etreLqkq~ns~se~L~Rsfav 432 (521)
T KOG1937|consen 385 KVYTQRIKEIDGNIRKQ-EQDIVKILEETRELQKQENSESEALNRSFAV 432 (521)
T ss_pred HHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34444444443322222 2578899999999999999999999998764
No 93
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.40 E-value=2.1e+02 Score=22.13 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 92 HEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 92 ~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
+-+..+|.+ +++|.--|=++|.+.+++|..++
T Consensus 94 ~rV~~aL~r-LgvPs~~dv~~L~~rId~L~~~v 125 (132)
T PF05597_consen 94 ERVARALNR-LGVPSRKDVEALSARIDQLTAQV 125 (132)
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 347788887 56665567778888888888765
No 94
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.33 E-value=1.7e+02 Score=21.91 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=16.6
Q ss_pred HHHHhhccCChHHHHHHHHHHH
Q 030068 64 ELKGMMKTVKIQDIDNLQDEMM 85 (183)
Q Consensus 64 aLK~~~k~~~id~Ve~lmDel~ 85 (183)
.|.+=...|+.+..+.++.+++
T Consensus 82 ~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 82 ELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHHHHhCCHHHHHHHHHHhc
Confidence 5666567788888888888775
No 95
>PRK06798 fliD flagellar capping protein; Validated
Probab=24.21 E-value=4.1e+02 Score=24.45 Aligned_cols=18 Identities=39% Similarity=0.398 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhccCC
Q 030068 56 TALKSANKELKGMMKTVK 73 (183)
Q Consensus 56 ~amk~g~~aLK~~~k~~~ 73 (183)
..|..-...|..+++.++
T Consensus 421 s~lnsQ~s~l~~~~~~~~ 438 (440)
T PRK06798 421 AALDSQLKTIKAMTKQKS 438 (440)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 334444455555555443
No 96
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.01 E-value=1.4e+02 Score=20.76 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030068 32 YNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (183)
Q Consensus 32 ~~~l~nLe~~~~~ie~a~~n~-~vv~amk~g~~aLK~~~k~~ 72 (183)
...+..|++++..+++-.... +.+..|+.|.+.++..++.+
T Consensus 8 Eeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L 49 (76)
T PRK14063 8 EEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKL 49 (76)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666554443 56788899999988876655
No 97
>PRK10547 chemotaxis protein CheA; Provisional
Probab=23.80 E-value=3.4e+02 Score=26.63 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Q 030068 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (183)
Q Consensus 22 K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lm 81 (183)
.+++--++.....+..|++.+..+|..-.+.+.++.+=-+...||-.-.-|.++.+..+.
T Consensus 5 ~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~ 64 (670)
T PRK10547 5 DFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETT 64 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHH
Confidence 456667788888999999999999987778899999988999998887777777544433
No 98
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=23.74 E-value=5.2e+02 Score=23.39 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhc---cCChHHHHHHHHHHHHHH
Q 030068 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQ--TMTALKSANKELKGMMK---TVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 20 rKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~--vv~amk~g~~aLK~~~k---~~~id~Ve~lmDel~E~~ 88 (183)
|...+..|...+.-....||.-+..||..+.++. +++.-..=+..||++-+ .++.+++...|-+..++.
T Consensus 222 RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~eK~~~~i~q~eeq~ 295 (410)
T KOG4715|consen 222 RMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEIAQAEEQA 295 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHH
Confidence 4556677888888888889998889998887653 44454555666776654 246666655555444443
No 99
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=23.52 E-value=3.1e+02 Score=20.71 Aligned_cols=11 Identities=9% Similarity=0.305 Sum_probs=5.4
Q ss_pred hHHHHHHHhcC
Q 030068 90 VSHEIQETLGR 100 (183)
Q Consensus 90 ~~~EI~eaL~~ 100 (183)
..+.+..+|..
T Consensus 71 i~~~l~~~L~~ 81 (137)
T cd00446 71 TLKQLLDVLEK 81 (137)
T ss_pred HHHHHHHHHHH
Confidence 33455555553
No 100
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=23.25 E-value=3.3e+02 Score=23.36 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q 030068 37 NLDQVAFASEGIKDAQQTMTALKSANK-ELKGMMK 70 (183)
Q Consensus 37 nLe~~~~~ie~a~~n~~vv~amk~g~~-aLK~~~k 70 (183)
++..+...|.+.+....+.+||+.-+. -|++..+
T Consensus 3 ~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~ 37 (288)
T PRK13423 3 SLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQE 37 (288)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888999999999999987443 3444433
No 101
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.21 E-value=6.3e+02 Score=23.75 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 030068 55 MTALKSANKELKG 67 (183)
Q Consensus 55 v~amk~g~~aLK~ 67 (183)
+..+..+.+.|..
T Consensus 250 ~~~l~~~~~~l~~ 262 (563)
T TIGR00634 250 LEGLGEAQLALAS 262 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.49 E-value=7.6e+02 Score=24.39 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGI 48 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a 48 (183)
|=.|++.+|..+.++...+-.-|..+..++.-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477888888888888887777777766643
No 103
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=21.79 E-value=3.7e+02 Score=22.91 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhc-cCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 030068 56 TALKSANKELKGMMK-TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121 (183)
Q Consensus 56 ~amk~g~~aLK~~~k-~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~ 121 (183)
-||..+.+..++..+ +++...+..+++.+.|.+ .|+.+++.... .+.+.+++||-.|.
T Consensus 131 PaL~~A~ki~~raa~~Gfdw~~~~~~~~k~~EE~---~El~~a~~~~~-----~~~~~ieeElGDlL 189 (248)
T TIGR00444 131 PALMRAAKIQKRCAKVGFDWEDVSPVWDKVYEEL---DEVMYEARQAV-----VEQNKLEEEMGDLL 189 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH---HHHHHHHhccc-----cchHHHHHHHHHHH
Confidence 456777777777655 578888888888777544 45566664421 13345666666555
No 104
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.25 E-value=3.1e+02 Score=19.45 Aligned_cols=51 Identities=27% Similarity=0.483 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcCCCCCC----CC--CCHHHHHHHHHHHHHhhc
Q 030068 75 QDIDNLQDEMMDLMDVSHEIQETLGRSYNVP----DD--IDEDELMGELDALEADMG 125 (183)
Q Consensus 75 d~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~----~~--~DedELe~EL~~L~~E~~ 125 (183)
.+|..+...++++.....-...+++.+.+.. .. -.--+|..|+..|+.|+.
T Consensus 15 qeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~ 71 (88)
T PF14389_consen 15 QEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVA 71 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHH
Confidence 3677777778888777777777877654321 11 145688899999998853
No 105
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=20.86 E-value=2e+02 Score=20.51 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH-HHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 030068 39 DQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM-MDLMDVSHEIQETLGRSYNVPDDIDEDELMGEL 117 (183)
Q Consensus 39 e~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel-~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL 117 (183)
.+....|+.++.+..++..|=..... .....++-+ ++.++ ......+.-|...++.. .|++ +..+|
T Consensus 7 ~k~~~~l~~v~~~~~lL~emL~~~~~-----~~~~~~~~e-l~~eL~~~ck~~r~~i~~li~~~------~dee-~l~~l 73 (100)
T PF03127_consen 7 SKRRSELEKVKNNAKLLNEMLDNYDP-----GEESSSDNE-LIQELYESCKSMRPRIQRLIEEV------EDEE-LLGEL 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT-----TTSTHHHHH-HHHHHHHHHHHHHHHHHHHHHTS------TTCH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCccchH-HHHHHHHHHHHHHHHHHHHHhhc------CcHH-HHHHH
Confidence 34455666666666666554333221 123333322 44443 33455566667766541 2333 66666
Q ss_pred HHHHHhh
Q 030068 118 DALEADM 124 (183)
Q Consensus 118 ~~L~~E~ 124 (183)
=.+-+++
T Consensus 74 L~~ND~L 80 (100)
T PF03127_consen 74 LQANDEL 80 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 106
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.45 E-value=5.4e+02 Score=21.94 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMD 89 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e 89 (183)
.++|||..=..+......+..+.+...+|+......+...|+..-...-+.+..-..+.=|..+-..+++...
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~ 178 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLE 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHH
Confidence 3444444444566666777788888888888888888777777666655554322234445555555544443
No 107
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=20.38 E-value=58 Score=23.52 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 25 EGQRDMLYNQTFNLDQVAFASEGIKD 50 (183)
Q Consensus 25 E~~l~~~~~~l~nLe~~~~~ie~a~~ 50 (183)
+..++.....+.+|+.++..|++|++
T Consensus 66 ~~t~edk~~Ald~le~LVE~IDNANn 91 (92)
T PF08609_consen 66 EVTLEDKLIALDNLEELVENIDNANN 91 (92)
T ss_pred CCCHHHHHHHHHHHHHHHHccccccc
Confidence 34566777788888888888887753
No 108
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.23 E-value=3.7e+02 Score=22.10 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=4.3
Q ss_pred HHHHHHhcC
Q 030068 92 HEIQETLGR 100 (183)
Q Consensus 92 ~EI~eaL~~ 100 (183)
+.+..+|..
T Consensus 125 k~l~~~L~k 133 (191)
T PRK14140 125 RQLLEALKK 133 (191)
T ss_pred HHHHHHHHH
Confidence 444455543
No 109
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.21 E-value=5.9e+02 Score=22.28 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHh
Q 030068 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDV 90 (183)
Q Consensus 11 K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~ 90 (183)
+.++..+.+.+..+...+.++......|+.+-.-+. +.|+.+.+-.+.-...-..-.+.+ .+++...+.+|...++.
T Consensus 49 ~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQ--k~Nk~lkeE~~~~~~eee~kR~el-~~kFq~~L~dIq~~~ee 125 (309)
T PF09728_consen 49 QKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQ--KQNKKLKEESKRRAREEEEKRKEL-SEKFQATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 344455555666666666666666666666655444 344555554444444444444444 46777777777777766
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 030068 91 SHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (183)
Q Consensus 91 ~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~ 122 (183)
+++-+..+.. ++.+|-+-|..|..
T Consensus 126 ~~~~~~k~~~--------eN~~L~eKlK~l~e 149 (309)
T PF09728_consen 126 QSERNIKLRE--------ENEELREKLKSLIE 149 (309)
T ss_pred ccchhHHHHH--------HHHHHHHHHHHHHH
Confidence 6554443221 33455555555554
No 110
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=20.17 E-value=2e+02 Score=20.58 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 030068 74 IQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121 (183)
Q Consensus 74 id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~ 121 (183)
.+.+..+..+|........=.+++|..........++.|+..||-.-.
T Consensus 3 ~e~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~c 50 (100)
T PF03127_consen 3 PEQVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESC 50 (100)
T ss_dssp HCTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHH
Confidence 356777888888888888888888886432211233447888775543
No 111
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=20.11 E-value=46 Score=20.48 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=4.1
Q ss_pred ccccCCCCccc
Q 030068 168 EDELGLPSVPQ 178 (183)
Q Consensus 168 ~de~~lp~~~~ 178 (183)
+.-||||.||-
T Consensus 13 vrsyglptipc 23 (44)
T PF11406_consen 13 VRSYGLPTIPC 23 (44)
T ss_dssp S--TTS-S---
T ss_pred EEccCCCCccc
Confidence 35599999985
No 112
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.05 E-value=98 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=24.1
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068 62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETL 98 (183)
Q Consensus 62 ~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL 98 (183)
++.++....+.|.+.||+.++.+.+.++....-...|
T Consensus 8 ~~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L 44 (131)
T PF05103_consen 8 NKEFKKSMRGYDPDEVDDFLDELAEELERLQRENAEL 44 (131)
T ss_dssp H----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555567899999999999998877664444333
No 113
>PRK14148 heat shock protein GrpE; Provisional
Probab=20.04 E-value=1.8e+02 Score=24.05 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=4.1
Q ss_pred HHHHHHhcC
Q 030068 92 HEIQETLGR 100 (183)
Q Consensus 92 ~EI~eaL~~ 100 (183)
+.+..+|..
T Consensus 128 k~l~~vL~k 136 (195)
T PRK14148 128 KMLVDILKK 136 (195)
T ss_pred HHHHHHHHH
Confidence 444445543
Done!