Query 030068
Match_columns 183
No_of_seqs 187 out of 704
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um3_B Charged multivesicular 99.7 9.2E-17 3.2E-21 118.8 9.8 78 70-157 1-78 (104)
2 3uly_B Charged multivesicular 99.7 1.7E-16 5.7E-21 108.4 6.3 68 100-179 1-69 (69)
3 2gd5_A Charged multivesicular 99.5 1.4E-15 4.8E-20 121.9 0.4 113 9-127 55-167 (179)
4 2luh_B Vacuolar protein-sortin 99.4 1.4E-14 4.8E-19 96.0 1.3 53 72-124 1-55 (59)
5 2lxm_B Charged multivesicular 99.2 6.2E-13 2.1E-17 87.8 -0.5 57 88-156 1-57 (57)
6 3frt_A Charged multivesicular 99.1 9.3E-11 3.2E-15 96.8 4.7 131 5-135 47-179 (218)
7 4abm_A Charged multivesicular 98.9 9.5E-10 3.3E-14 77.4 5.0 39 8-46 41-79 (79)
8 2gd5_A Charged multivesicular 88.1 0.097 3.3E-06 41.0 0.1 43 24-66 59-101 (179)
9 3um3_B Charged multivesicular 77.3 5.7 0.00019 28.6 5.8 38 77-114 12-49 (104)
10 1oxz_A ADP-ribosylation factor 71.5 8.9 0.0003 30.3 6.1 40 79-124 107-147 (186)
11 1naf_A ADP-ribosylation factor 67.5 7.5 0.00026 30.0 4.7 40 79-124 91-131 (158)
12 3frt_A Charged multivesicular 67.0 1.9 6.4E-05 35.1 1.2 104 21-128 56-168 (218)
13 1deq_A Fibrinogen (alpha chain 50.7 1.3E+02 0.0043 26.4 10.0 22 17-38 58-79 (390)
14 2lch_A Protein OR38; structura 50.6 60 0.002 22.5 7.4 67 22-88 6-72 (113)
15 3kyj_A CHEA3, putative histidi 48.8 78 0.0027 23.3 8.7 68 22-89 11-78 (144)
16 1o3x_A ADP-ribosylation factor 44.8 7.6 0.00026 29.3 1.2 40 79-124 82-122 (140)
17 2inr_A DNA topoisomerase 4 sub 44.1 1.5E+02 0.0053 26.8 9.9 88 35-127 406-501 (514)
18 1tqg_A Chemotaxis protein CHEA 43.4 74 0.0025 21.5 7.5 67 22-88 5-71 (105)
19 1wrd_A TOM1, target of MYB pro 42.3 34 0.0012 24.1 4.4 73 38-124 8-82 (103)
20 2ld6_A Chemotaxis protein CHEA 40.2 1E+02 0.0035 22.3 7.2 66 23-88 5-70 (139)
21 3m91_B Prokaryotic ubiquitin-l 39.7 14 0.00049 22.5 1.6 20 72-91 11-30 (44)
22 3qne_A Seryl-tRNA synthetase, 37.4 2.3E+02 0.0077 25.4 11.1 45 9-53 13-57 (485)
23 1i5n_A Chemotaxis protein CHEA 35.5 77 0.0026 23.2 5.6 63 22-84 7-69 (146)
24 2kjg_A Archaeal protein SSO690 35.2 29 0.00099 24.4 2.9 35 64-98 11-45 (99)
25 3etw_A Adhesin A; antiparallel 33.7 1.2E+02 0.004 22.2 6.1 24 26-49 41-64 (119)
26 2nov_A DNA topoisomerase 4 sub 32.3 1.8E+02 0.0063 26.2 8.4 53 70-127 425-477 (496)
27 2inr_A DNA topoisomerase 4 sub 30.4 2.5E+02 0.0085 25.4 9.0 17 108-124 454-470 (514)
28 2lp4_A Chemotaxis protein CHEA 29.3 1E+02 0.0036 24.1 5.8 59 23-81 8-66 (225)
29 3ilw_A DNA gyrase subunit A; D 28.3 3.2E+02 0.011 24.4 10.9 91 31-126 364-462 (470)
30 1ez3_A Syntaxin-1A; three heli 28.1 75 0.0026 22.2 4.3 12 112-123 47-58 (127)
31 4abx_A DNA repair protein RECN 27.1 2E+02 0.0068 21.5 10.6 72 27-100 36-112 (175)
32 4adz_A CSOR; transcription, co 26.6 2E+02 0.0069 21.4 7.5 61 18-81 48-108 (136)
33 3ilw_A DNA gyrase subunit A; D 23.1 1.6E+02 0.0055 26.4 6.3 17 108-124 416-432 (470)
34 3cra_A Protein MAZG; tandem-re 22.2 2.8E+02 0.0095 22.8 7.2 58 56-121 142-200 (265)
35 1fxk_C Protein (prefoldin); ar 22.0 2.1E+02 0.0073 20.2 6.8 41 16-56 5-45 (133)
36 3mxz_A Tubulin-specific chaper 21.7 2.3E+02 0.0077 20.4 5.8 27 14-40 17-43 (116)
37 2xcs_B DNA gyrase subunit B, D 21.2 5.2E+02 0.018 24.3 10.2 87 35-126 589-683 (692)
38 3oiq_B DNA polymerase alpha ca 21.0 55 0.0019 18.8 1.8 12 74-85 13-24 (36)
39 3viq_A SWI5-dependent recombin 20.3 1.3E+02 0.0045 21.8 4.4 32 14-45 2-33 (122)
No 1
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=118.76 Aligned_cols=78 Identities=26% Similarity=0.465 Sum_probs=63.3
Q ss_pred ccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCC
Q 030068 70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELN 149 (183)
Q Consensus 70 k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~ 149 (183)
++|+||+|+++||+++|++++++||+++|+++++++.++|++||++||++|+++...+....++.. . .+.
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~---~-------~~~ 70 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGP---E-------TVP 70 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCC---C-------CCC
Confidence 469999999999999999999999999999998777789999999999999998766554222211 0 135
Q ss_pred CCCCCCCC
Q 030068 150 LPTAPSGH 157 (183)
Q Consensus 150 lP~~P~~~ 157 (183)
||+||++.
T Consensus 71 LP~vP~~~ 78 (104)
T 3um3_B 71 LPNVPSIA 78 (104)
T ss_pred CCCCCCCc
Confidence 78888765
No 2
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=99.65 E-value=1.7e-16 Score=108.44 Aligned_cols=68 Identities=37% Similarity=0.667 Sum_probs=55.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC-CCCCcccccCCCCccc
Q 030068 100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQH-DRPQAEDELGLPSVPQ 178 (183)
Q Consensus 100 ~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~~~~~~~-~~~~~~de~~lp~~~~ 178 (183)
|+|+++ ++||+||++||++|..|+..+. +||||+++ ..+|.+|.+.|..+. ..++.+||||||+||+
T Consensus 1 rsy~~p-diDE~eL~aELdaL~~e~~~~~---~pSyL~~~--------~~~P~~p~~~p~~~~~~~~~~vDEfGLP~iPa 68 (69)
T 3uly_B 1 RSYGTP-ELDEDDLEAELDALGDELLADE---DSSYLDEA--------ASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA 68 (69)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHhccc---Ccchhhcc--------ccCCCCCCCCCCccccCCCcccCccCcccCCC
Confidence 567887 7999999999999999986543 69999865 368899998886443 3578899999999998
Q ss_pred c
Q 030068 179 A 179 (183)
Q Consensus 179 ~ 179 (183)
+
T Consensus 69 ~ 69 (69)
T 3uly_B 69 S 69 (69)
T ss_pred C
Confidence 4
No 3
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.51 E-value=1.4e-15 Score=121.86 Aligned_cols=113 Identities=18% Similarity=0.225 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 9 ~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~ 88 (183)
+.|-.|+.++|.||+ ..++.....+|+++.+.++++..+..|+.+|+.++++|+.+|+.|++++|..+|++|.+++
T Consensus 55 ~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~ 130 (179)
T 2gd5_A 55 VCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEM 130 (179)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345578899999875 6778889999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068 89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (183)
Q Consensus 89 e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e 127 (183)
+++++|+++|+.+++. ..|+++.++|.+++...+.+|
T Consensus 131 ~~~~~~~E~m~d~~~~--~~~~~~~eee~d~~v~kVl~E 167 (179)
T 2gd5_A 131 MKAGIIEEMLEDTFES--MDDQEEMEEEAEMEIDRILFE 167 (179)
T ss_dssp HHHTSCC---------------------CTTHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhh--cccCCCcHHHHHHHHHHHHHH
Confidence 9999999999998753 234444556666666655544
No 4
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.4e-14 Score=96.02 Aligned_cols=53 Identities=42% Similarity=0.661 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHhh
Q 030068 72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP--DDIDEDELMGELDALEADM 124 (183)
Q Consensus 72 ~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~--~~~DedELe~EL~~L~~E~ 124 (183)
||||+|++++|+|++.++.++||+++|||+|++| +++|++||++||++|+.|-
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~ 55 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED 55 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence 6899999999999999999999999999999998 4899999999999999874
No 5
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=99.23 E-value=6.2e-13 Score=87.77 Aligned_cols=57 Identities=42% Similarity=0.711 Sum_probs=29.5
Q ss_pred HHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccCCCCCCCCC
Q 030068 88 MDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSG 156 (183)
Q Consensus 88 ~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e~~~~vps~l~~~~~~~~~~~~~lP~~P~~ 156 (183)
++..+||+++|+++|+++ ++||+||++||++|++|...+ .+||||..+ +..|++|++
T Consensus 1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~~~---~~~syL~~~--------~~ap~~p~~ 57 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELLAD---EDSSYLDEA--------ASAPAIPEG 57 (57)
T ss_dssp ---------------CCC-CCCHHHHHHHHHHHHHHHHHC---SCCHHHHHH--------HHC------
T ss_pred CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHhhc---ccchHHHHh--------hhccCCCCC
Confidence 467899999999999987 899999999999999997544 469998644 357888863
No 6
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.06 E-value=9.3e-11 Score=96.80 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=89.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (183)
Q Consensus 5 ~~k~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel 84 (183)
++++|++..|+.+-|.--...++..+++....+|..+.+.++++..+..+..+|+.++++|+.+|+.|++.+|..+|++|
T Consensus 47 aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~ef 126 (218)
T 3frt_A 47 AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMREL 126 (218)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777777777777777777778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHHHhhccccccCCCCC
Q 030068 85 MDLMDVSHEIQETLGRSYNV--PDDIDEDELMGELDALEADMGMEDEAGVPSY 135 (183)
Q Consensus 85 ~E~~e~~~EI~eaL~~~~~~--~~~~DedELe~EL~~L~~E~~~e~~~~vps~ 135 (183)
..+++..+-+.++|...++. .++.+++|.+.|.+....|+.....+.+|+.
T Consensus 127 ekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~~p~~ 179 (218)
T 3frt_A 127 SKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK 179 (218)
T ss_dssp HHHHHHHSCC----------------CTTSTTTHHHHHHHTC-----------
T ss_pred HHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhcCCCC
Confidence 99999988888888876542 1223456677788888777765544555543
No 7
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=98.93 E-value=9.5e-10 Score=77.36 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASE 46 (183)
Q Consensus 8 ~~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie 46 (183)
.++|++|+.||||||+||++|++++++++|||+++++||
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999999999999985
No 8
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=88.10 E-value=0.097 Score=41.05 Aligned_cols=43 Identities=7% Similarity=-0.090 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELK 66 (183)
Q Consensus 24 ~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK 66 (183)
|=+++-+...+..+|-++..+|++.....++..++..-..+|+
T Consensus 59 ~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~ 101 (179)
T 2gd5_A 59 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQ 101 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555444444444444443
No 9
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=77.28 E-value=5.7 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHH
Q 030068 77 IDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELM 114 (183)
Q Consensus 77 Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe 114 (183)
++++.+.+..+.+.++-|+..++.+..+.++.=++||+
T Consensus 12 mDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe 49 (104)
T 3um3_B 12 MQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELE 49 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 45666777778888888888876543443333345665
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=71.53 E-value=8.9 Score=30.30 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHh-HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 79 NLQDEMMDLMDV-SHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 79 ~lmDel~E~~e~-~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
+++.++.+.... +--|..+++.. .|++++..||=.+-+++
T Consensus 107 Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~ND~L 147 (186)
T 1oxz_A 107 DLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQANDNL 147 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHhhHHH
Confidence 455555554443 44566666542 35566667766666553
No 11
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=67.52 E-value=7.5 Score=29.97 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHh-HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 79 NLQDEMMDLMDV-SHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 79 ~lmDel~E~~e~-~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
+++.++-+.... +--|..+++.. .|++++..||=.+-+++
T Consensus 91 Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~ND~L 131 (158)
T 1naf_A 91 DLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQANDNL 131 (158)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHC------CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHhhHHH
Confidence 455555544443 33455555541 24555666666555543
No 12
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=66.96 E-value=1.9 Score=35.05 Aligned_cols=104 Identities=10% Similarity=0.019 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH--HHHHHHHHhHHHHHHH-
Q 030068 21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ--DEMMDLMDVSHEIQET- 97 (183)
Q Consensus 21 KK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lm--Del~E~~e~~~EI~ea- 97 (183)
=|.|=+++-+..++..+|-.+..+|++......+..++..-..+|+..-+.| ..+..+| ..|...|..-..=..-
T Consensus 56 arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M--~~~n~~m~l~~i~~tM~efekE~~k~ 133 (218)
T 3frt_A 56 CIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKA 133 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHH--HHHHHSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3677788888888888898888888888888887777777777766544433 3555555 4444444333222222
Q ss_pred --hcCCCCCCCCCC----HHHHHHHHHHHHHhhcccc
Q 030068 98 --LGRSYNVPDDID----EDELMGELDALEADMGMED 128 (183)
Q Consensus 98 --L~~~~~~~~~~D----edELe~EL~~L~~E~~~e~ 128 (183)
+..-+ .+-+| +++.++|-+.+...+.+|-
T Consensus 134 ~i~eEmm--~Da~d~~~~~~~~eee~d~~v~kVldEi 168 (218)
T 3frt_A 134 GIIEEML--EDTFESMDDQEEMEEEAEMEIDRILFEI 168 (218)
T ss_dssp SCC------------------CTTSTTTHHHHHHHTC
T ss_pred hhHHHHH--HHHHhcccccCCchHHHHHHHHHHHHHH
Confidence 22222 22233 2334455556666666554
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.73 E-value=1.3e+02 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030068 17 VLKQKRMYEGQRDMLYNQTFNL 38 (183)
Q Consensus 17 ~LkrKK~~E~~l~~~~~~l~nL 38 (183)
+++.-+-+...++++.+.++.+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3444455555555555555444
No 14
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=50.55 E-value=60 Score=22.48 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 22 K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~ 88 (183)
.+++.-++.....+..|++.+..++..-.+...++++..+...||-.-.-+.+..|.++--.+++..
T Consensus 6 el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 6 EYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4556667777888888888888888776677888888888888888777788888888776666543
No 15
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=48.77 E-value=78 Score=23.33 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 030068 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMD 89 (183)
Q Consensus 22 K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e 89 (183)
.+++--++.....+.+|++.+..++..-.+.+.++++-.+...||---.-+.++.|.++--.+++..+
T Consensus 11 ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~ 78 (144)
T 3kyj_A 11 EIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIG 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHH
Confidence 45666777888888889998888887767788888888888888877666777766666555554443
No 16
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=44.85 E-value=7.6 Score=29.27 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHh-HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 030068 79 NLQDEMMDLMDV-SHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (183)
Q Consensus 79 ~lmDel~E~~e~-~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~ 124 (183)
+++.++-..... +--|..+++.. .|++++..||=.+-+++
T Consensus 82 Ell~eL~~~ck~~qp~i~~li~e~------~ddee~l~elL~~ND~l 122 (140)
T 1o3x_A 82 DLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQANDNL 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHhhHHH
Confidence 455555555443 34455555541 35556666666655543
No 17
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=44.12 E-value=1.5e+02 Score=26.78 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCC
Q 030068 35 TFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (183)
Q Consensus 35 l~nLe~~~~~ie~a~~n~~vv~amk~--------g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~ 106 (183)
+.+++.++.-|.++....++...|.. +...|.--...+.-.+++++..+..+.....+++..+|+....
T Consensus 406 ~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~--- 482 (514)
T 2inr_A 406 LSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDA--- 482 (514)
T ss_dssp HHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---
Confidence 34455555555555444444444432 2222222223566778888999999888888899998886311
Q ss_pred CCCHHHHHHHHHHHHHhhccc
Q 030068 107 DIDEDELMGELDALEADMGME 127 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~e 127 (183)
=.+=+-+||.++.....++
T Consensus 483 --~~~~i~~el~~i~~~yg~~ 501 (514)
T 2inr_A 483 --LLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp --HHHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHHHHcCCC
Confidence 1234678888888776543
No 18
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=43.45 E-value=74 Score=21.51 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 22 K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~ 88 (183)
.+++.-++.....+..|++.+..++....+...+.++......||-.-..+....|..+--.+++..
T Consensus 5 ~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 4566667777788888888888887766667778888888888888777778888887776666543
No 19
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=42.33 E-value=34 Score=24.09 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHHHHHHHHHHH-hHHHHHHHhcCCCCCCCCCCHHHHHH
Q 030068 38 LDQVAFASEGIKDAQQTMTALKSANKELKGMMK-TVKIQDIDNLQDEMMDLMD-VSHEIQETLGRSYNVPDDIDEDELMG 115 (183)
Q Consensus 38 Le~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k-~~~id~Ve~lmDel~E~~e-~~~EI~eaL~~~~~~~~~~DedELe~ 115 (183)
+.+....|+.++.+..++.-|=.+ ... .-+..+ .+++.++-+... .+.-|..+++. .+++++..
T Consensus 8 ~~k~~~el~~v~~n~~lL~EML~~------~~p~~~~~~~-~el~~eL~~~c~~~qp~i~~li~~-------~~dee~l~ 73 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEMLTE------LVPTQAEPAD-LELLQELNRTCRAMQQRVLELIPQ-------IANEQLTE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SCTTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHH
Confidence 445566677666666666554332 211 112222 255555555444 44556666663 25566777
Q ss_pred HHHHHHHhh
Q 030068 116 ELDALEADM 124 (183)
Q Consensus 116 EL~~L~~E~ 124 (183)
+|=.+-+++
T Consensus 74 ~lL~~ND~L 82 (103)
T 1wrd_A 74 ELLIVNDNL 82 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhHHH
Confidence 776666554
No 20
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=40.24 E-value=1e+02 Score=22.25 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 030068 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (183)
Q Consensus 23 ~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~ 88 (183)
+++.-++.....+..|++.+..++....+...++++..+...||-.-..+.+..|.++--.+++..
T Consensus 5 ll~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l 70 (139)
T 2ld6_A 5 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHH
Confidence 455667777778888888888887665567778888888888888777788888887776666544
No 21
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=39.71 E-value=14 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHHHHhH
Q 030068 72 VKIQDIDNLQDEMMDLMDVS 91 (183)
Q Consensus 72 ~~id~Ve~lmDel~E~~e~~ 91 (183)
...+.+|+++|+|.+.++.+
T Consensus 11 ~~~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 11 KLTEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHh
Confidence 34678889999888877654
No 22
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.41 E-value=2.3e+02 Score=25.38 Aligned_cols=45 Identities=7% Similarity=-0.080 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQ 53 (183)
Q Consensus 9 ~~K~~Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~ 53 (183)
|+...-...|++|..-...++++...-..-.+++..++..+....
T Consensus 13 ~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn 57 (485)
T 3qne_A 13 GDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLN 57 (485)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777764322344444444444444555555544443
No 23
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=35.46 E-value=77 Score=23.20 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 030068 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (183)
Q Consensus 22 K~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel 84 (183)
.+++.-++.....+..|++.+..++....+...++.+..+...||-.-..+.+..|.++--.+
T Consensus 7 ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~l 69 (146)
T 1i5n_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLM 69 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHH
Confidence 355666677777777777777666654444556666666666666655555555554444333
No 24
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=35.19 E-value=29 Score=24.41 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHh
Q 030068 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETL 98 (183)
Q Consensus 64 aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL 98 (183)
.|.+..+++|.+.|+.+++++++..-..+-|-.++
T Consensus 11 eLrkfKgkvd~~~v~~IL~eiE~~~rksnni~tS~ 45 (99)
T 2kjg_A 11 KLRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSI 45 (99)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 46677778999999999999999988877776654
No 25
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.67 E-value=1.2e+02 Score=22.19 Aligned_cols=24 Identities=13% Similarity=-0.190 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 26 GQRDMLYNQTFNLDQVAFASEGIK 49 (183)
Q Consensus 26 ~~l~~~~~~l~nLe~~~~~ie~a~ 49 (183)
..|.+...+..++..-+..|....
T Consensus 41 ~~La~~~~l~~~i~er~~~i~~~~ 64 (119)
T 3etw_A 41 QALAQNEQVYNELSQRAQRLQAEA 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555543
No 26
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=32.35 E-value=1.8e+02 Score=26.16 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred ccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030068 70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (183)
Q Consensus 70 k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~~E~~~e 127 (183)
..+.-.+++++..+..+.....+++..+|+... .=-+=+-+||.++.....++
T Consensus 425 ~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~-----~~~~~i~~el~~i~~~y~~~ 477 (496)
T 2nov_A 425 YRLTNTDVVVLQEEEAELREKIAMLAAIIGDER-----TMYNLMKKELREVKKKFATP 477 (496)
T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHHhCCC
Confidence 456778899999999999999999999998742 11345778999998876654
No 27
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=30.35 E-value=2.5e+02 Score=25.40 Aligned_cols=17 Identities=41% Similarity=0.350 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHhh
Q 030068 108 IDEDELMGELDALEADM 124 (183)
Q Consensus 108 ~DedELe~EL~~L~~E~ 124 (183)
.+-+.|.+|+++|..++
T Consensus 454 ~e~~kl~~E~~~l~~ei 470 (514)
T 2inr_A 454 TDIVALEGEHKELEALI 470 (514)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888888888764
No 28
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=29.34 E-value=1e+02 Score=24.06 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Q 030068 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (183)
Q Consensus 23 ~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lm 81 (183)
+++--++.....+.+|++.+..++..-.+.+.++++-.+...||---.-+.++.|.++-
T Consensus 8 ~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~la 66 (225)
T 2lp4_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETT 66 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHH
Confidence 45666777778888888888888776666777777777777777655555555554433
No 29
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=28.28 E-value=3.2e+02 Score=24.38 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCC
Q 030068 31 LYNQTFNLDQVAFASEGIKDAQQTMTALK--------SANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSY 102 (183)
Q Consensus 31 ~~~~l~nLe~~~~~ie~a~~n~~vv~amk--------~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~ 102 (183)
+.-.+.++..++.-|..+.+..+....|- ++...|.--...+.-..++++.++..+..+...++...|+..-
T Consensus 364 l~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~ 443 (470)
T 3ilw_A 364 LVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPE 443 (470)
T ss_dssp HHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33344556666666665544333333332 2222222222456667778888888888888888888887631
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcc
Q 030068 103 NVPDDIDEDELMGELDALEADMGM 126 (183)
Q Consensus 103 ~~~~~~DedELe~EL~~L~~E~~~ 126 (183)
. =-.=+-+||.++.....+
T Consensus 444 ~-----~~~~i~~el~~i~~~yg~ 462 (470)
T 3ilw_A 444 R-----QRGIVRDELAEIVDRHGD 462 (470)
T ss_dssp H-----HHHHHHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHHHhCC
Confidence 1 123466788877776543
No 30
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.10 E-value=75 Score=22.25 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHh
Q 030068 112 ELMGELDALEAD 123 (183)
Q Consensus 112 ELe~EL~~L~~E 123 (183)
.+..+|+.|..+
T Consensus 47 ~~~~~l~~l~~~ 58 (127)
T 1ez3_A 47 KTKEELEELMSD 58 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 31
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=27.11 E-value=2e+02 Score=21.53 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 030068 27 QRDMLYNQTFNLDQVAFASEGIKDAQ-----QTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100 (183)
Q Consensus 27 ~l~~~~~~l~nLe~~~~~ie~a~~n~-----~vv~amk~g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~ 100 (183)
.|..-...+.|.+.+...+..+..-. .++..+..+...|..+ ..++. .+..+.+.+.+.....+++..-|.+
T Consensus 36 eLe~e~~rL~nae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l-~~~d~-~l~~~~e~l~~a~~~l~d~~~~L~~ 112 (175)
T 4abx_A 36 GLNTELSRLSNLHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAG-AKYDE-TVMQLQNELRAALESVQAIAGELRD 112 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH-HTTCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH-HHhCh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666554322 3556666666666654 23442 4667777777777777777776664
No 32
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=26.57 E-value=2e+02 Score=21.43 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Q 030068 18 LKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (183)
Q Consensus 18 LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~amk~g~~aLK~~~k~~~id~Ve~lm 81 (183)
-+.|+.+-+.|.++.+|+.-|.. .||.-..=.+|+..+....++|+++...+=-+-+...+
T Consensus 48 ~~~Kk~ll~RLkRIeGQvrGI~r---MIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV 108 (136)
T 4adz_A 48 HKQKAEHLKRLRRIEGQIRGLQR---MVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCV 108 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555565544444 44555666777788888888887776554334444433
No 33
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.11 E-value=1.6e+02 Score=26.35 Aligned_cols=17 Identities=18% Similarity=0.640 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHhh
Q 030068 108 IDEDELMGELDALEADM 124 (183)
Q Consensus 108 ~DedELe~EL~~L~~E~ 124 (183)
.+.+.|++|+++|..++
T Consensus 416 le~~kl~~E~~~l~~~i 432 (470)
T 3ilw_A 416 LERQRIIDDLAKIEAEI 432 (470)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67778888888888764
No 34
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=22.21 E-value=2.8e+02 Score=22.81 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhc-cCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 030068 56 TALKSANKELKGMMK-TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121 (183)
Q Consensus 56 ~amk~g~~aLK~~~k-~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~~~DedELe~EL~~L~ 121 (183)
=||-.+.+..++..+ +++.+.+..+++.+.|.+ .|+.+++.... -|.+.+++||-.|.
T Consensus 142 PaL~~A~kiq~raa~vGfdw~~~~~v~~Kl~EEl---~El~eal~~~~-----~~~~~ieeElGDlL 200 (265)
T 3cra_A 142 PALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEI---DEVMYEARQAV-----VDQAKLEEEMGDLL 200 (265)
T ss_dssp CHHHHHHHHHHHHHTTTCSCSSHHHHHHHHHHHH---HHHHHHHHSSS-----CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH---HHHHHHHHhcc-----CCHHHHHHHHHHHH
Confidence 366677777777655 578888888887777554 34445554221 13445666665554
No 35
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.04 E-value=2.1e+02 Score=20.16 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT 56 (183)
Q Consensus 16 ~~LkrKK~~E~~l~~~~~~l~nLe~~~~~ie~a~~n~~vv~ 56 (183)
.+.-.+..|+.++..+..++.+|...+..++.+......+.
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556778888889999998888888888877766555544
No 36
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=21.68 E-value=2.3e+02 Score=20.37 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQ 40 (183)
Q Consensus 14 Al~~LkrKK~~E~~l~~~~~~l~nLe~ 40 (183)
-++++|-+.+|++.+..-...+..|..
T Consensus 17 vkRL~KE~~~Y~kE~~~q~~kiekmk~ 43 (116)
T 3mxz_A 17 CKRIVKELHSYEKEVEREAAKTADMKD 43 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999998877777665544
No 37
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=21.19 E-value=5.2e+02 Score=24.27 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCC
Q 030068 35 TFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (183)
Q Consensus 35 l~nLe~~~~~ie~a~~n~~vv~amk~--------g~~aLK~~~k~~~id~Ve~lmDel~E~~e~~~EI~eaL~~~~~~~~ 106 (183)
+.++..++..|..+..-.++...|.. +...|.--...+.-.+++++..+..+.....+++..+|+....
T Consensus 589 ~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~--- 665 (692)
T 2xcs_B 589 LDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEV--- 665 (692)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHhHHHHHHHHHhCCCHHHHHHHHhhccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---
Confidence 44555555555555444343333332 1122222123456667777788888888888888888876311
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 030068 107 DIDEDELMGELDALEADMGM 126 (183)
Q Consensus 107 ~~DedELe~EL~~L~~E~~~ 126 (183)
=-.=+-+||.++.....+
T Consensus 666 --~~~~i~~el~~i~~~yg~ 683 (692)
T 2xcs_B 666 --LLQLVRDELTEIRDRFGD 683 (692)
T ss_dssp --HHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHcCC
Confidence 112356777777666543
No 38
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=21.04 E-value=55 Score=18.77 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHH
Q 030068 74 IQDIDNLQDEMM 85 (183)
Q Consensus 74 id~Ve~lmDel~ 85 (183)
.++|+++||+++
T Consensus 13 ~nDvq~Ll~DVE 24 (36)
T 3oiq_B 13 ANDVQDLLDDVE 24 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhHHHHHHHhh
Confidence 467888888775
No 39
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.30 E-value=1.3e+02 Score=21.83 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030068 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFAS 45 (183)
Q Consensus 14 Al~~LkrKK~~E~~l~~~~~~l~nLe~~~~~i 45 (183)
++.+++++..+++++..+...+.+|.+.+.--
T Consensus 2 ~~~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~ 33 (122)
T 3viq_A 2 HMQLLSRRLKLEKEVRNLQEQLITAETARKVE 33 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999998888888877765433
Done!