BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030070
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
          Length = 93

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 28  CTTVLVGLAPCLNYITGNXXXXXX----XXXXXXXXXXXXXPRCLCSVLNSGGSSLGIAI 83
           C  V   L+PCL Y+TG                         +  C+ L S   S+   +
Sbjct: 4   CGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI-TKL 62

Query: 84  NQSQALALPGACNVQTP----PASQCNTV 108
           N + A ALPG C V  P      + CNTV
Sbjct: 63  NTNNAAALPGKCGVNIPYKISTTTNCNTV 91


>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
           Protein 1
          Length = 91

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 66  RCLCSVLNSGGSSLGIAINQSQALALPGACNVQTP----PASQCNTVN 109
           R +CS L +   ++   IN + A ALPG C V  P     ++ CN++N
Sbjct: 45  RAVCSCLKAAAGAV-RGINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,407,230
Number of Sequences: 62578
Number of extensions: 74670
Number of successful extensions: 103
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 5
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)