Query 030070
Match_columns 183
No_of_seqs 191 out of 1087
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 8.6E-16 1.9E-20 111.4 4.2 74 26-100 1-79 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.5 2.9E-15 6.3E-20 105.3 3.2 71 28-105 1-73 (73)
3 PF14368 LTP_2: Probable lipid 99.5 5.5E-16 1.2E-20 112.3 -0.9 76 24-105 18-96 (96)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 1.6E-14 3.4E-19 97.9 3.4 63 35-97 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 6.5E-13 1.4E-17 92.2 3.2 61 33-100 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 1.5E-10 3.2E-15 79.5 4.1 75 28-105 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.7 1.4E-10 3E-15 83.4 -6.5 74 28-105 8-90 (90)
8 PF14547 Hydrophob_seed: Hydro 96.5 0.00073 1.6E-08 49.1 0.3 77 28-106 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 95.8 0.0067 1.4E-07 44.2 2.2 77 27-105 3-85 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 86.6 0.15 3.3E-06 37.7 -0.7 69 33-106 13-109 (110)
11 PF07172 GRP: Glycine rich pro 83.2 1 2.2E-05 33.3 2.4 12 1-12 1-12 (95)
12 KOG1924 RhoA GTPase effector D 36.3 1.6E+02 0.0034 30.1 7.5 13 90-102 520-532 (1102)
13 PF05617 Prolamin_like: Prolam 27.0 60 0.0013 21.7 2.3 33 35-70 9-46 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.59 E-value=8.6e-16 Score=111.37 Aligned_cols=74 Identities=36% Similarity=0.763 Sum_probs=62.2
Q ss_pred CCChhhccCcccchhhhhCCCCCCChhHHHHHHhhhcC-----CCcccceeccCCCCCCCcccChHHhhhccCCcccCCC
Q 030070 26 SGCTTVLVGLAPCLNYITGNSSTPSSSCCSQLASVVQS-----QPRCLCSVLNSGGSSLGIAINQSQALALPGACNVQTP 100 (183)
Q Consensus 26 ~~C~~v~~~L~pCl~yv~g~~~~Ps~~CC~~l~~v~~s-----~~~CLC~~l~~~~~~~g~~in~trA~~LP~~Cgv~~P 100 (183)
.+|.++...|.||++|+++++..|++.||++++++++. +.+|+|.++++....+. .||.+|+++||++||++++
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~-~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS-GLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccC-CCCHHHHHhChHhcccCCC
Confidence 36999999999999999998778999999999998753 45788887877554442 3899999999999999986
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.54 E-value=2.9e-15 Score=105.30 Aligned_cols=71 Identities=38% Similarity=0.758 Sum_probs=59.2
Q ss_pred ChhhccCcccchhhhhCCC--CCCChhHHHHHHhhhcCCCcccceeccCCCCCCCcccChHHhhhccCCcccCCCCCCCC
Q 030070 28 CTTVLVGLAPCLNYITGNS--STPSSSCCSQLASVVQSQPRCLCSVLNSGGSSLGIAINQSQALALPGACNVQTPPASQC 105 (183)
Q Consensus 28 C~~v~~~L~pCl~yv~g~~--~~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~g~~in~trA~~LP~~Cgv~~Pp~s~C 105 (183)
|...+..|.+|++||++++ ..|+..||++++++ +.+|+|.+++.. .+. .||.+||.+||++|||++|+ ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~--~~~-~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL--VLQ-IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC--ccc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 5566678999999999876 46999999999986 667999887753 333 48999999999999999998 887
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.54 E-value=5.5e-16 Score=112.31 Aligned_cols=76 Identities=54% Similarity=1.076 Sum_probs=49.0
Q ss_pred ccCCChhhccCcccc---hhhhhCCCCCCChhHHHHHHhhhcCCCcccceeccCCCCCCCcccChHHhhhccCCcccCCC
Q 030070 24 AQSGCTTVLVGLAPC---LNYITGNSSTPSSSCCSQLASVVQSQPRCLCSVLNSGGSSLGIAINQSQALALPGACNVQTP 100 (183)
Q Consensus 24 A~~~C~~v~~~L~pC---l~yv~g~~~~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~g~~in~trA~~LP~~Cgv~~P 100 (183)
...+|.+. |.+| +.|+.++ ..|+..||++++++++.+..|||+++++.. ..+++||.+|++.||++||++.+
T Consensus 18 ~~~~c~~~---l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~-~~~~~in~~~a~~Lp~~Cg~~~~ 92 (96)
T PF14368_consen 18 CCCSCANS---LLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSPG-APGFGINVTRALALPAACGVPVP 92 (96)
T ss_dssp BTTB-HCC---CCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC-HCHHCCTCHHHHHHHHHCTSS-S
T ss_pred CcchhHHH---HhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCccc-cccCCcCHHHHHHHHHHcCCCCC
Confidence 34567544 6665 8888854 589999999999998889999999998864 23456999999999999999998
Q ss_pred CCCCC
Q 030070 101 PASQC 105 (183)
Q Consensus 101 p~s~C 105 (183)
+ ++|
T Consensus 93 ~-~~C 96 (96)
T PF14368_consen 93 P-SKC 96 (96)
T ss_dssp -----
T ss_pred C-CCC
Confidence 8 777
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.49 E-value=1.6e-14 Score=97.95 Aligned_cols=63 Identities=56% Similarity=1.037 Sum_probs=53.8
Q ss_pred cccchhhhhCCCCCCChhHHHHHHhhhcCCCcccceeccCCCCCCCcccChHHhhhccCCccc
Q 030070 35 LAPCLNYITGNSSTPSSSCCSQLASVVQSQPRCLCSVLNSGGSSLGIAINQSQALALPGACNV 97 (183)
Q Consensus 35 L~pCl~yv~g~~~~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~g~~in~trA~~LP~~Cgv 97 (183)
|.||++|+++++..|+..||++++++.+.++.|+|+++++........+|.+++++||++|||
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 679999999887789999999999999889999999999865433212379999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.34 E-value=6.5e-13 Score=92.16 Aligned_cols=61 Identities=38% Similarity=0.739 Sum_probs=52.4
Q ss_pred cCcccchhhhhCCCCCCChhHHHHHHhhhcCCCcccceeccCCCCCCCcccChHHhhhccCCcccCCC
Q 030070 33 VGLAPCLNYITGNSSTPSSSCCSQLASVVQSQPRCLCSVLNSGGSSLGIAINQSQALALPGACNVQTP 100 (183)
Q Consensus 33 ~~L~pCl~yv~g~~~~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~g~~in~trA~~LP~~Cgv~~P 100 (183)
.+|.+|++|++++ ..|+..||+.|++ +..|||++++++. ++..||.++|++|+++|||++|
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~p~--l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKNPS--LKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecCcc--HHhhcCcHHHHHHHHHcCCCCC
Confidence 4799999999976 4899999999998 4589999998753 3335899999999999999885
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.07 E-value=1.5e-10 Score=79.53 Aligned_cols=75 Identities=40% Similarity=0.835 Sum_probs=59.1
Q ss_pred ChhhccCcccchhhhhCC--CCCCChhHHHHHHhhhcCCCcccceeccCCCCCCCc--ccChHHhhhccCCcccCCCCCC
Q 030070 28 CTTVLVGLAPCLNYITGN--SSTPSSSCCSQLASVVQSQPRCLCSVLNSGGSSLGI--AINQSQALALPGACNVQTPPAS 103 (183)
Q Consensus 28 C~~v~~~L~pCl~yv~g~--~~~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~g~--~in~trA~~LP~~Cgv~~Pp~s 103 (183)
|...+..+.+|++|+++. ...|+..||++|+.+. +..|+|.+++.....+.. .+|..++..||+.||+..++ +
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~-~ 77 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPY-T 77 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCC-C
Confidence 666777788999999986 4578999999999986 788999988765332211 25899999999999998764 4
Q ss_pred CC
Q 030070 104 QC 105 (183)
Q Consensus 104 ~C 105 (183)
.|
T Consensus 78 ~C 79 (79)
T smart00499 78 DC 79 (79)
T ss_pred CC
Confidence 54
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.71 E-value=1.4e-10 Score=83.39 Aligned_cols=74 Identities=36% Similarity=0.844 Sum_probs=57.7
Q ss_pred ChhhccCcccchhhhhCCCCCCChhHHHHHHhhhcCCCcccceeccCCCCCC---------CcccChHHhhhccCCcccC
Q 030070 28 CTTVLVGLAPCLNYITGNSSTPSSSCCSQLASVVQSQPRCLCSVLNSGGSSL---------GIAINQSQALALPGACNVQ 98 (183)
Q Consensus 28 C~~v~~~L~pCl~yv~g~~~~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~---------g~~in~trA~~LP~~Cgv~ 98 (183)
|..+...+.+|+.|++++...|+..||++|+++ +..|.|..++...... ...++..+|..||+.|||.
T Consensus 8 ~~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~ 84 (90)
T PF00234_consen 8 CSPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS 84 (90)
T ss_dssp CGTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhccccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence 333334589999999987667999999999999 8899999887643321 1258899999999999999
Q ss_pred CCCCCCC
Q 030070 99 TPPASQC 105 (183)
Q Consensus 99 ~Pp~s~C 105 (183)
+++ .+|
T Consensus 85 ~~~-~~C 90 (90)
T PF00234_consen 85 PPY-TDC 90 (90)
T ss_dssp SSS-S-G
T ss_pred CCC-CCC
Confidence 875 344
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=96.51 E-value=0.00073 Score=49.14 Aligned_cols=77 Identities=30% Similarity=0.628 Sum_probs=53.7
Q ss_pred ChhhccCcccchhhhh----CCCCCCChhHHHHHHhhhcCC-CcccceeccCCCCCCC-cccChHHhh-hccCCcccCCC
Q 030070 28 CTTVLVGLAPCLNYIT----GNSSTPSSSCCSQLASVVQSQ-PRCLCSVLNSGGSSLG-IAINQSQAL-ALPGACNVQTP 100 (183)
Q Consensus 28 C~~v~~~L~pCl~yv~----g~~~~Ps~~CC~~l~~v~~s~-~~CLC~~l~~~~~~~g-~~in~trA~-~LP~~Cgv~~P 100 (183)
|.-....|.-|.+.+. ..+..+...||.-++++...+ ..|||..++.. .+| +++|....+ .|-+.||-..|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~--vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN--VLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh--cccccccccccHHHHHHHHhCCcCc
Confidence 5444457788888871 112357889999999987655 49999888764 344 444444444 45688999998
Q ss_pred CCCCCC
Q 030070 101 PASQCN 106 (183)
Q Consensus 101 p~s~C~ 106 (183)
+.++|.
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 888884
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=95.77 E-value=0.0067 Score=44.16 Aligned_cols=77 Identities=27% Similarity=0.633 Sum_probs=53.6
Q ss_pred CChhhccCcccchhhhhCC----CCCCChhHHHHHHhhhcCC-CcccceeccCCCCCCCcccChHHhhhc-cCCcccCCC
Q 030070 27 GCTTVLVGLAPCLNYITGN----SSTPSSSCCSQLASVVQSQ-PRCLCSVLNSGGSSLGIAINQSQALAL-PGACNVQTP 100 (183)
Q Consensus 27 ~C~~v~~~L~pCl~yv~g~----~~~Ps~~CC~~l~~v~~s~-~~CLC~~l~~~~~~~g~~in~trA~~L-P~~Cgv~~P 100 (183)
.|.-....|.-|.+-+..- +..|..+||.-++++..-+ ..|+|..++.. .+|+++|..-.+.+ -+.||-..|
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan--~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN--ILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc--ccCcccccChhHHHHHHHHcCcCC
Confidence 3544445677777766321 2467799999999987654 59999988863 45655655555544 578999999
Q ss_pred CCCCC
Q 030070 101 PASQC 105 (183)
Q Consensus 101 p~s~C 105 (183)
+.++|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 88887
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=86.63 E-value=0.15 Score=37.68 Aligned_cols=69 Identities=26% Similarity=0.583 Sum_probs=44.7
Q ss_pred cCcccchhhhhCCC---C-----------CCChhHHHHHHhhhcCCCcccceeccCCCCCC----C----------cccC
Q 030070 33 VGLAPCLNYITGNS---S-----------TPSSSCCSQLASVVQSQPRCLCSVLNSGGSSL----G----------IAIN 84 (183)
Q Consensus 33 ~~L~pCl~yv~g~~---~-----------~Ps~~CC~~l~~v~~s~~~CLC~~l~~~~~~~----g----------~~in 84 (183)
..|.+|..||.-.. . .....||..|+.+ ...|.|..|......+ + ...-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 35889999986321 1 1236699999998 7889998775321110 0 1123
Q ss_pred hHHhhhccCCcccCCCCCCCCC
Q 030070 85 QSQALALPGACNVQTPPASQCN 106 (183)
Q Consensus 85 ~trA~~LP~~Cgv~~Pp~s~C~ 106 (183)
...|..||..||+..+ ..|.
T Consensus 90 ~~~a~~Lp~~C~~~~~--~~C~ 109 (110)
T cd00261 90 RQAAQNLPSMCNLYPP--PYCP 109 (110)
T ss_pred HHHHHhhchhcCCCCC--CCCC
Confidence 4578899999999862 3564
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.19 E-value=1 Score=33.30 Aligned_cols=12 Identities=42% Similarity=0.324 Sum_probs=7.2
Q ss_pred CcchhhHHHHHH
Q 030070 1 MAPKHIELCLVL 12 (183)
Q Consensus 1 Ma~~~~~~~~v~ 12 (183)
|++|+++++.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 997765544333
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.31 E-value=1.6e+02 Score=30.11 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=10.3
Q ss_pred hccCCcccCCCCC
Q 030070 90 ALPGACNVQTPPA 102 (183)
Q Consensus 90 ~LP~~Cgv~~Pp~ 102 (183)
.+|..||++.||.
T Consensus 520 ~~~~~~~iP~PP~ 532 (1102)
T KOG1924|consen 520 LLPIDGGIPPPPP 532 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 5789999998753
No 13
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=27.00 E-value=60 Score=21.68 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=22.1
Q ss_pred cccchhhh----h-CCCCCCChhHHHHHHhhhcCCCcccce
Q 030070 35 LAPCLNYI----T-GNSSTPSSSCCSQLASVVQSQPRCLCS 70 (183)
Q Consensus 35 L~pCl~yv----~-g~~~~Ps~~CC~~l~~v~~s~~~CLC~ 70 (183)
.-.|..-| . |+....+..||..+.++ ...|.=.
T Consensus 9 ~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~---g~~C~~~ 46 (70)
T PF05617_consen 9 SPGCGDEIFNSFFNGNKKNIGPECCKAINKM---GKDCHPA 46 (70)
T ss_pred ccchHHHHHHHHHcCCCCCCChHHHHHHHHH---hHhHHHH
Confidence 34465543 3 44357999999999887 5667655
Done!