Query 030071
Match_columns 183
No_of_seqs 152 out of 1691
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0868 Glutathione S-transfer 100.0 7.3E-34 1.6E-38 200.8 13.2 160 20-181 3-170 (217)
2 PRK15113 glutathione S-transfe 100.0 1.6E-32 3.4E-37 207.3 14.9 162 18-180 1-167 (214)
3 PLN02473 glutathione S-transfe 100.0 5E-30 1.1E-34 193.5 16.4 159 22-181 2-171 (214)
4 PRK09481 sspA stringent starva 100.0 9.9E-30 2.1E-34 191.7 16.6 149 21-180 9-162 (211)
5 KOG0406 Glutathione S-transfer 100.0 1.4E-29 2.9E-34 189.0 16.3 137 21-167 8-146 (231)
6 COG0625 Gst Glutathione S-tran 100.0 2.8E-29 6.2E-34 189.1 15.2 156 23-181 1-167 (211)
7 PRK13972 GSH-dependent disulfi 100.0 8.7E-30 1.9E-34 192.4 12.3 155 22-180 1-167 (215)
8 TIGR01262 maiA maleylacetoacet 100.0 3.3E-28 7.1E-33 183.0 15.4 156 24-180 1-166 (210)
9 PLN02395 glutathione S-transfe 100.0 1.3E-27 2.9E-32 180.3 17.8 156 23-180 3-169 (215)
10 PRK10357 putative glutathione 100.0 5E-28 1.1E-32 181.0 14.1 155 23-181 1-160 (202)
11 PRK10542 glutathionine S-trans 99.9 5.4E-27 1.2E-31 175.2 14.3 151 23-180 1-159 (201)
12 KOG0867 Glutathione S-transfer 99.9 2.6E-27 5.6E-32 180.0 12.4 159 22-181 2-169 (226)
13 PRK11752 putative S-transferas 99.9 2.5E-26 5.3E-31 178.6 17.4 155 21-180 43-213 (264)
14 PRK10387 glutaredoxin 2; Provi 99.9 5.5E-24 1.2E-28 159.9 11.5 151 23-181 1-177 (210)
15 PLN02378 glutathione S-transfe 99.9 3.6E-22 7.8E-27 150.7 14.4 132 29-181 18-156 (213)
16 cd03052 GST_N_GDAP1 GST_N fami 99.9 8E-23 1.7E-27 128.8 8.8 73 23-95 1-73 (73)
17 TIGR02182 GRXB Glutaredoxin, G 99.9 1.5E-22 3.2E-27 152.4 10.8 149 24-180 1-175 (209)
18 PTZ00057 glutathione s-transfe 99.9 1.2E-21 2.6E-26 147.0 15.7 142 21-180 3-160 (205)
19 TIGR00862 O-ClC intracellular 99.9 1.4E-21 3.1E-26 148.7 14.6 122 28-167 16-140 (236)
20 PF13417 GST_N_3: Glutathione 99.9 5.6E-22 1.2E-26 125.7 9.3 74 25-101 1-74 (75)
21 cd03045 GST_N_Delta_Epsilon GS 99.9 5.5E-22 1.2E-26 125.3 9.0 74 23-96 1-74 (74)
22 cd03048 GST_N_Ure2p_like GST_N 99.9 1E-21 2.2E-26 126.3 9.7 77 22-99 1-80 (81)
23 PLN02817 glutathione dehydroge 99.9 2.7E-21 5.9E-26 150.0 13.9 131 29-180 71-207 (265)
24 cd03050 GST_N_Theta GST_N fami 99.9 1.2E-21 2.6E-26 124.5 9.6 76 23-98 1-76 (76)
25 cd03053 GST_N_Phi GST_N family 99.9 2.3E-21 4.9E-26 123.1 9.5 76 22-97 1-76 (76)
26 cd03059 GST_N_SspA GST_N famil 99.9 3.4E-21 7.4E-26 121.2 9.3 73 23-98 1-73 (73)
27 cd03041 GST_N_2GST_N GST_N fam 99.9 2.7E-21 5.8E-26 123.2 8.0 75 22-98 1-77 (77)
28 cd03058 GST_N_Tau GST_N family 99.9 6.6E-21 1.4E-25 120.4 9.3 73 23-98 1-74 (74)
29 cd03047 GST_N_2 GST_N family, 99.8 6.4E-21 1.4E-25 120.2 8.8 73 23-95 1-73 (73)
30 cd03056 GST_N_4 GST_N family, 99.8 7.2E-21 1.6E-25 119.7 8.8 73 23-95 1-73 (73)
31 cd03061 GST_N_CLIC GST_N famil 99.8 8.1E-21 1.8E-25 123.5 8.7 70 29-101 20-89 (91)
32 cd03057 GST_N_Beta GST_N famil 99.8 1.2E-20 2.7E-25 120.0 9.1 76 23-99 1-77 (77)
33 cd03046 GST_N_GTT1_like GST_N 99.8 1.7E-20 3.7E-25 119.0 9.5 76 23-99 1-76 (76)
34 cd03044 GST_N_EF1Bgamma GST_N 99.8 1.4E-20 3E-25 119.2 8.2 72 24-96 2-74 (75)
35 cd03051 GST_N_GTT2_like GST_N 99.8 1.5E-20 3.3E-25 118.4 8.1 73 23-95 1-74 (74)
36 cd03042 GST_N_Zeta GST_N famil 99.8 2.1E-20 4.5E-25 117.6 8.6 73 23-95 1-73 (73)
37 PF02798 GST_N: Glutathione S- 99.8 3.5E-20 7.5E-25 117.7 8.8 73 24-96 2-76 (76)
38 cd03076 GST_N_Pi GST_N family, 99.8 2.1E-20 4.6E-25 117.8 7.6 72 23-97 2-73 (73)
39 cd03060 GST_N_Omega_like GST_N 99.8 5.2E-20 1.1E-24 115.4 8.6 68 24-94 2-70 (71)
40 cd03055 GST_N_Omega GST_N fami 99.8 8.4E-20 1.8E-24 119.4 9.8 85 8-95 2-89 (89)
41 cd03039 GST_N_Sigma_like GST_N 99.8 4.3E-20 9.3E-25 116.0 7.2 72 23-96 1-72 (72)
42 cd03075 GST_N_Mu GST_N family, 99.8 1.7E-19 3.7E-24 116.1 8.7 75 24-98 2-82 (82)
43 cd03037 GST_N_GRX2 GST_N famil 99.8 2.1E-19 4.6E-24 112.5 7.7 70 23-96 1-71 (71)
44 cd03049 GST_N_3 GST_N family, 99.8 2.3E-19 5.1E-24 112.9 7.7 70 23-95 1-73 (73)
45 cd03077 GST_N_Alpha GST_N fami 99.8 7.9E-19 1.7E-23 112.3 9.3 72 22-99 1-77 (79)
46 PF13409 GST_N_2: Glutathione 99.8 6.3E-19 1.4E-23 110.1 8.2 68 30-97 1-70 (70)
47 cd03038 GST_N_etherase_LigE GS 99.8 7.1E-19 1.5E-23 113.8 8.5 70 29-99 14-84 (84)
48 cd03080 GST_N_Metaxin_like GST 99.8 1.3E-18 2.9E-23 110.1 8.6 68 22-99 1-75 (75)
49 cd03040 GST_N_mPGES2 GST_N fam 99.8 3E-18 6.5E-23 109.0 8.6 72 22-98 1-76 (77)
50 KOG1695 Glutathione S-transfer 99.8 1.2E-17 2.6E-22 124.0 12.7 152 20-180 1-160 (206)
51 cd03043 GST_N_1 GST_N family, 99.8 5.8E-18 1.2E-22 106.6 8.2 67 28-95 7-73 (73)
52 cd00570 GST_N_family Glutathio 99.7 9E-17 2E-21 99.3 8.4 71 23-95 1-71 (71)
53 KOG4420 Uncharacterized conser 99.7 1.3E-16 2.7E-21 119.7 9.7 93 23-115 27-120 (325)
54 PLN02907 glutamate-tRNA ligase 99.7 4.8E-16 1E-20 134.5 12.3 118 23-181 3-126 (722)
55 cd03054 GST_N_Metaxin GST_N fa 99.7 4.4E-16 9.6E-21 97.7 8.2 58 30-97 15-72 (72)
56 COG2999 GrxB Glutaredoxin 2 [P 99.6 1.2E-14 2.7E-19 103.4 8.1 96 23-126 1-97 (215)
57 cd03079 GST_N_Metaxin2 GST_N f 99.5 8.8E-14 1.9E-18 87.1 7.1 64 23-97 11-74 (74)
58 KOG1422 Intracellular Cl- chan 99.4 1.7E-11 3.7E-16 89.7 14.0 131 29-176 19-151 (221)
59 TIGR02190 GlrX-dom Glutaredoxi 99.3 2E-11 4.3E-16 77.8 7.9 73 20-95 7-79 (79)
60 KOG3029 Glutathione S-transfer 99.2 7.4E-11 1.6E-15 89.9 9.5 70 22-96 90-159 (370)
61 PRK10638 glutaredoxin 3; Provi 99.2 7.8E-11 1.7E-15 75.8 7.3 73 21-95 2-74 (83)
62 cd03029 GRX_hybridPRX5 Glutare 99.1 7.3E-10 1.6E-14 69.2 7.9 71 22-95 2-72 (72)
63 cd03078 GST_N_Metaxin1_like GS 99.0 1.8E-09 3.9E-14 67.7 7.9 59 29-97 14-72 (73)
64 TIGR02196 GlrX_YruB Glutaredox 98.9 4.4E-09 9.5E-14 65.3 6.6 71 22-94 1-73 (74)
65 cd03027 GRX_DEP Glutaredoxin ( 98.9 6.3E-09 1.4E-13 65.1 6.7 67 22-90 2-68 (73)
66 KOG4244 Failed axon connection 98.9 1.6E-07 3.5E-12 71.4 13.9 90 21-123 44-140 (281)
67 cd02976 NrdH NrdH-redoxin (Nrd 98.9 8.3E-09 1.8E-13 63.9 5.9 62 23-86 2-63 (73)
68 cd02066 GRX_family Glutaredoxi 98.8 1.9E-08 4E-13 62.0 6.8 70 22-93 1-70 (72)
69 PRK10329 glutaredoxin-like pro 98.8 2.5E-08 5.5E-13 63.7 6.4 60 22-84 2-61 (81)
70 TIGR02200 GlrX_actino Glutared 98.8 3.4E-08 7.4E-13 62.0 6.4 64 22-87 1-66 (77)
71 COG0695 GrxC Glutaredoxin and 98.7 7E-08 1.5E-12 61.5 6.9 71 22-93 2-73 (80)
72 cd03418 GRX_GRXb_1_3_like Glut 98.7 7.4E-08 1.6E-12 60.4 6.7 71 22-94 1-72 (75)
73 TIGR02181 GRX_bact Glutaredoxi 98.6 1.9E-07 4.2E-12 59.2 6.6 72 23-96 1-72 (79)
74 PRK11200 grxA glutaredoxin 1; 98.5 8E-07 1.7E-11 57.2 8.3 76 22-99 2-84 (85)
75 TIGR02194 GlrX_NrdH Glutaredox 98.5 2.4E-07 5.2E-12 57.8 5.3 57 23-82 1-57 (72)
76 TIGR02189 GlrX-like_plant Glut 98.5 6.6E-07 1.4E-11 59.4 7.0 75 18-92 5-80 (99)
77 TIGR02183 GRXA Glutaredoxin, G 98.5 1.1E-06 2.4E-11 56.7 7.5 75 23-99 2-83 (86)
78 PF00462 Glutaredoxin: Glutare 98.4 2.3E-07 4.9E-12 55.7 3.4 60 23-84 1-60 (60)
79 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.4E-06 3E-11 55.4 7.1 75 22-96 1-76 (82)
80 PHA03050 glutaredoxin; Provisi 98.4 1.9E-06 4.1E-11 58.0 7.3 74 19-92 11-88 (108)
81 TIGR00365 monothiol glutaredox 98.2 7.5E-06 1.6E-10 54.1 7.2 74 18-93 9-87 (97)
82 cd03028 GRX_PICOT_like Glutare 98.2 9.6E-06 2.1E-10 52.8 7.1 74 19-94 6-84 (90)
83 COG0435 ECM4 Predicted glutath 98.2 3.6E-05 7.9E-10 59.2 10.6 153 17-178 46-238 (324)
84 TIGR02180 GRX_euk Glutaredoxin 98.1 1.3E-05 2.7E-10 51.0 6.7 74 23-96 1-77 (84)
85 cd03189 GST_C_GTT1_like GST_C 98.1 5.9E-06 1.3E-10 56.2 5.5 76 105-181 2-90 (119)
86 KOG2903 Predicted glutathione 98.1 5.2E-05 1.1E-09 57.9 10.0 152 18-179 33-239 (319)
87 cd03182 GST_C_GTT2_like GST_C 98.0 1.4E-05 3E-10 54.1 4.6 74 108-181 1-85 (117)
88 cd03178 GST_C_Ure2p_like GST_C 97.9 4.1E-05 8.8E-10 51.5 6.5 71 111-181 1-76 (113)
89 PF10568 Tom37: Outer mitochon 97.9 8.5E-05 1.8E-09 46.2 7.2 55 30-94 13-71 (72)
90 cd03180 GST_C_2 GST_C family, 97.9 3.8E-05 8.2E-10 51.2 5.4 71 111-181 2-79 (110)
91 cd03188 GST_C_Beta GST_C famil 97.6 4.5E-05 9.9E-10 51.2 3.1 71 111-181 2-79 (114)
92 PRK12759 bifunctional gluaredo 97.6 0.00019 4E-09 59.5 7.3 69 21-92 2-79 (410)
93 cd03196 GST_C_5 GST_C family, 97.6 4.5E-05 9.8E-10 51.8 3.1 70 108-181 3-77 (115)
94 PRK10824 glutaredoxin-4; Provi 97.6 0.00034 7.4E-09 47.6 7.0 73 19-93 13-90 (115)
95 cd03031 GRX_GRX_like Glutaredo 97.6 0.00038 8.3E-09 49.4 6.9 68 23-92 2-79 (147)
96 cd03187 GST_C_Phi GST_C family 97.5 0.00019 4.1E-09 48.4 4.9 70 111-180 2-80 (118)
97 cd03179 GST_C_1 GST_C family, 97.5 4.2E-05 9E-10 50.6 1.5 71 111-181 2-79 (105)
98 cd03181 GST_C_EFB1gamma GST_C 97.5 0.00028 6E-09 48.1 5.5 70 111-180 1-75 (123)
99 cd02973 TRX_GRX_like Thioredox 97.4 0.00069 1.5E-08 41.1 6.2 58 22-85 2-64 (67)
100 KOG1752 Glutaredoxin and relat 97.4 0.0009 1.9E-08 44.6 7.0 77 17-93 10-87 (104)
101 cd03195 GST_C_4 GST_C family, 97.4 6.7E-05 1.5E-09 50.9 1.3 71 110-181 2-73 (114)
102 cd03191 GST_C_Zeta GST_C famil 97.4 0.00066 1.4E-08 46.2 6.2 72 110-181 2-82 (121)
103 cd03185 GST_C_Tau GST_C family 97.3 0.00027 5.8E-09 48.4 3.9 65 110-181 2-71 (126)
104 KOG3027 Mitochondrial outer me 97.3 0.0097 2.1E-07 44.2 11.7 85 30-125 33-117 (257)
105 cd03186 GST_C_SspA GST_N famil 97.3 0.00063 1.4E-08 45.2 5.1 65 110-181 2-71 (107)
106 cd03200 GST_C_JTV1 GST_C famil 97.3 0.00023 5E-09 46.8 2.7 66 91-181 1-71 (96)
107 PF14834 GST_C_4: Glutathione 97.2 0.0011 2.3E-08 44.7 5.3 75 108-182 1-75 (117)
108 PRK01655 spxA transcriptional 97.0 0.0012 2.5E-08 46.1 4.4 34 22-55 1-34 (131)
109 PTZ00062 glutaredoxin; Provisi 97.0 0.0035 7.6E-08 47.0 7.1 72 19-92 111-187 (204)
110 cd03032 ArsC_Spx Arsenate Redu 97.0 0.0013 2.8E-08 44.7 4.4 34 22-55 1-34 (115)
111 cd03036 ArsC_like Arsenate Red 97.0 0.0011 2.5E-08 44.7 3.9 33 23-55 1-33 (111)
112 cd03205 GST_C_6 GST_C family, 96.9 0.00087 1.9E-08 43.9 3.0 66 116-181 2-70 (98)
113 cd03183 GST_C_Theta GST_C fami 96.9 0.0014 3E-08 44.9 3.9 70 112-181 2-82 (126)
114 cd02977 ArsC_family Arsenate R 96.9 0.0017 3.7E-08 43.3 4.2 33 23-55 1-33 (105)
115 cd03190 GST_C_ECM4_like GST_C 96.8 0.0027 5.9E-08 44.7 5.2 65 110-180 3-72 (142)
116 COG4545 Glutaredoxin-related p 96.8 0.0052 1.1E-07 38.0 5.4 65 21-85 2-77 (85)
117 KOG3028 Translocase of outer m 96.8 0.029 6.3E-07 44.2 10.6 92 30-131 16-108 (313)
118 cd03177 GST_C_Delta_Epsilon GS 96.8 0.0034 7.3E-08 42.5 4.9 67 111-180 2-73 (118)
119 PRK12559 transcriptional regul 96.7 0.0029 6.4E-08 44.0 4.5 35 22-56 1-35 (131)
120 cd03030 GRX_SH3BGR Glutaredoxi 96.6 0.014 3E-07 38.1 6.8 68 23-92 2-79 (92)
121 PRK13344 spxA transcriptional 96.6 0.0037 8E-08 43.6 4.4 34 22-55 1-34 (132)
122 TIGR01617 arsC_related transcr 96.5 0.0048 1E-07 42.0 4.1 32 23-54 1-32 (117)
123 PRK10026 arsenate reductase; P 96.4 0.0058 1.3E-07 43.0 4.5 35 21-55 2-36 (141)
124 cd03035 ArsC_Yffb Arsenate Red 96.2 0.0091 2E-07 39.9 4.1 33 23-55 1-33 (105)
125 cd03033 ArsC_15kD Arsenate Red 96.1 0.011 2.4E-07 40.1 4.1 33 23-55 2-34 (113)
126 COG1393 ArsC Arsenate reductas 96.0 0.014 3E-07 39.8 4.4 34 22-55 2-35 (117)
127 PRK10853 putative reductase; P 95.9 0.014 3E-07 39.9 4.0 34 22-55 1-34 (118)
128 cd00299 GST_C_family Glutathio 95.8 0.008 1.7E-07 38.7 2.5 66 116-181 2-72 (100)
129 TIGR01616 nitro_assoc nitrogen 95.7 0.021 4.6E-07 39.5 4.3 34 22-55 2-35 (126)
130 TIGR00412 redox_disulf_2 small 95.6 0.1 2.2E-06 32.5 7.0 55 23-85 3-61 (76)
131 PF05768 DUF836: Glutaredoxin- 95.6 0.082 1.8E-06 33.4 6.5 55 22-81 1-57 (81)
132 TIGR00411 redox_disulf_1 small 95.5 0.099 2.1E-06 32.5 6.6 57 22-82 2-62 (82)
133 cd03026 AhpF_NTD_C TRX-GRX-lik 95.4 0.078 1.7E-06 34.2 6.0 58 22-85 15-77 (89)
134 cd03184 GST_C_Omega GST_C fami 95.4 0.03 6.4E-07 38.2 4.3 61 111-180 2-69 (124)
135 cd03206 GST_C_7 GST_C family, 95.2 0.025 5.4E-07 37.0 3.3 61 116-179 2-67 (100)
136 PHA02125 thioredoxin-like prot 95.2 0.11 2.3E-06 32.2 6.0 54 22-82 1-54 (75)
137 cd03207 GST_C_8 GST_C family, 95.0 0.0053 1.2E-07 40.4 -0.5 60 116-181 2-66 (103)
138 TIGR00014 arsC arsenate reduct 94.8 0.053 1.1E-06 36.7 4.0 33 23-55 1-33 (114)
139 cd03034 ArsC_ArsC Arsenate Red 94.7 0.058 1.3E-06 36.4 4.0 32 23-54 1-32 (112)
140 cd01659 TRX_superfamily Thiore 94.2 0.17 3.7E-06 28.6 5.0 52 24-78 2-58 (69)
141 COG0278 Glutaredoxin-related p 93.9 0.36 7.8E-06 31.8 6.2 69 20-94 14-92 (105)
142 cd03203 GST_C_Lambda GST_C fam 93.6 0.19 4.1E-06 34.1 4.9 14 108-121 1-14 (120)
143 PF13192 Thioredoxin_3: Thiore 93.5 0.32 7E-06 30.2 5.5 57 23-87 3-63 (76)
144 PF11287 DUF3088: Protein of u 90.7 0.32 6.9E-06 32.7 3.0 67 30-99 23-108 (112)
145 cd03192 GST_C_Sigma_like GST_C 90.5 0.41 8.8E-06 31.2 3.5 68 111-180 2-76 (104)
146 PF04908 SH3BGR: SH3-binding, 90.3 0.61 1.3E-05 30.8 4.1 68 23-92 3-85 (99)
147 cd03204 GST_C_GDAP1 GST_C fami 89.7 0.3 6.5E-06 32.9 2.3 39 143-181 22-75 (111)
148 cd03210 GST_C_Pi GST_C family, 89.2 0.57 1.2E-05 31.9 3.5 64 110-180 2-73 (126)
149 cd03194 GST_C_3 GST_C family, 88.6 0.25 5.5E-06 33.2 1.4 18 149-166 40-57 (114)
150 PF03960 ArsC: ArsC family; I 88.4 0.63 1.4E-05 31.1 3.2 29 26-54 1-29 (110)
151 PF13410 GST_C_2: Glutathione 88.0 0.97 2.1E-05 27.0 3.7 35 146-180 2-41 (69)
152 cd03209 GST_C_Mu GST_C family, 87.5 1.8 3.8E-05 29.2 5.1 64 111-180 2-70 (121)
153 PF09635 MetRS-N: MetRS-N bind 87.5 0.36 7.7E-06 33.0 1.5 28 73-100 35-64 (122)
154 TIGR03143 AhpF_homolog putativ 85.7 2.7 5.9E-05 36.4 6.4 58 22-85 479-541 (555)
155 cd03208 GST_C_Alpha GST_C fami 85.5 1.6 3.5E-05 30.3 4.1 66 111-180 3-76 (137)
156 PF00043 GST_C: Glutathione S- 85.4 1.5 3.2E-05 27.8 3.7 37 144-180 22-63 (95)
157 cd02947 TRX_family TRX family; 84.5 7 0.00015 23.8 6.9 55 22-82 13-74 (93)
158 cd02949 TRX_NTR TRX domain, no 82.8 8.1 0.00017 24.7 6.4 59 22-84 16-80 (97)
159 PRK15317 alkyl hydroperoxide r 82.5 3.2 6.9E-05 35.6 5.4 72 22-97 119-197 (517)
160 cd02975 PfPDO_like_N Pyrococcu 82.4 5.5 0.00012 26.6 5.6 52 23-78 25-80 (113)
161 TIGR03140 AhpF alkyl hydropero 81.4 3.3 7.1E-05 35.5 5.1 61 22-86 120-183 (515)
162 cd03193 GST_C_Metaxin GST_C fa 80.8 3 6.5E-05 26.2 3.7 31 150-180 19-54 (88)
163 TIGR01295 PedC_BrcD bacterioci 80.3 16 0.00034 24.9 7.5 62 23-84 27-103 (122)
164 cd02989 Phd_like_TxnDC9 Phosdu 80.0 10 0.00022 25.3 6.2 60 23-86 26-90 (113)
165 cd03201 GST_C_DHAR GST_C famil 78.6 3.8 8.3E-05 27.8 3.8 32 150-181 30-67 (121)
166 PF00085 Thioredoxin: Thioredo 77.8 15 0.00032 23.2 9.1 71 22-96 20-102 (103)
167 PF14497 GST_C_3: Glutathione 77.2 0.54 1.2E-05 30.5 -0.7 63 108-179 2-71 (99)
168 cd03198 GST_C_CLIC GST_C famil 77.0 2.1 4.5E-05 29.9 2.2 24 145-168 24-47 (134)
169 cd03202 GST_C_etherase_LigE GS 76.5 7.6 0.00016 26.3 4.9 33 148-180 56-93 (124)
170 cd02953 DsbDgamma DsbD gamma f 75.3 7.9 0.00017 25.0 4.6 56 22-78 14-77 (104)
171 KOG0911 Glutaredoxin-related p 74.1 7.2 0.00016 29.6 4.5 71 21-93 139-214 (227)
172 TIGR02187 GlrX_arch Glutaredox 69.3 25 0.00055 26.3 6.6 53 22-78 136-191 (215)
173 KOG3425 Uncharacterized conser 68.0 31 0.00067 23.7 6.0 66 29-97 43-122 (128)
174 TIGR02681 phage_pRha phage reg 67.2 6.9 0.00015 26.2 2.8 26 74-99 2-28 (108)
175 cd02984 TRX_PICOT TRX domain, 65.5 31 0.00067 21.6 7.2 58 23-84 18-81 (97)
176 COG3011 Predicted thiol-disulf 65.2 45 0.00098 23.4 7.7 79 18-98 5-87 (137)
177 cd02963 TRX_DnaJ TRX domain, D 64.4 38 0.00082 22.3 6.9 58 22-83 27-91 (111)
178 cd02978 KaiB_like KaiB-like fa 64.0 22 0.00047 22.0 4.3 53 22-78 3-60 (72)
179 PTZ00051 thioredoxin; Provisio 62.9 36 0.00077 21.4 6.3 57 23-83 22-83 (98)
180 TIGR02187 GlrX_arch Glutaredox 61.5 41 0.00089 25.1 6.5 60 22-83 22-89 (215)
181 PF04134 DUF393: Protein of un 56.6 38 0.00082 22.3 5.1 71 26-97 2-77 (114)
182 PF01323 DSBA: DSBA-like thior 56.3 24 0.00052 25.4 4.4 35 22-56 1-40 (193)
183 cd02959 ERp19 Endoplasmic reti 55.9 58 0.0013 21.8 5.9 61 22-84 22-90 (117)
184 PF04564 U-box: U-box domain; 55.6 36 0.00079 20.7 4.4 45 73-120 15-69 (73)
185 cd02997 PDI_a_PDIR PDIa family 52.8 31 0.00067 21.8 4.1 59 22-82 20-86 (104)
186 COG0041 PurE Phosphoribosylcar 51.6 27 0.00058 25.0 3.6 31 32-66 16-46 (162)
187 COG3019 Predicted metal-bindin 50.3 30 0.00066 24.4 3.7 73 20-98 25-104 (149)
188 cd03021 DsbA_GSTK DsbA family, 49.9 34 0.00073 25.4 4.3 35 21-55 1-39 (209)
189 PHA03075 glutaredoxin-like pro 48.8 34 0.00074 23.3 3.6 66 21-97 3-69 (123)
190 PRK09381 trxA thioredoxin; Pro 48.6 72 0.0016 20.5 7.4 59 22-84 24-88 (109)
191 COG5494 Predicted thioredoxin/ 45.4 79 0.0017 24.1 5.4 58 22-84 12-70 (265)
192 PRK10996 thioredoxin 2; Provis 44.9 1E+02 0.0022 21.2 7.5 58 23-84 56-119 (139)
193 cd03003 PDI_a_ERdj5_N PDIa fam 44.2 82 0.0018 19.9 6.1 57 22-82 21-83 (101)
194 TIGR01162 purE phosphoribosyla 43.7 46 0.001 23.9 3.9 29 32-64 12-40 (156)
195 PHA02278 thioredoxin-like prot 43.4 93 0.002 20.3 7.6 62 23-84 18-85 (103)
196 PF09413 DUF2007: Domain of un 42.8 31 0.00068 20.4 2.6 32 23-54 1-32 (67)
197 cd02948 TRX_NDPK TRX domain, T 41.2 38 0.00081 21.8 3.0 58 22-84 20-84 (102)
198 PF00731 AIRC: AIR carboxylase 40.6 44 0.00095 23.8 3.4 29 32-64 14-42 (150)
199 PRK11657 dsbG disulfide isomer 40.5 41 0.00089 26.0 3.6 22 22-43 120-141 (251)
200 cd04911 ACT_AKiii-YclM-BS_1 AC 40.4 34 0.00074 21.4 2.5 25 30-54 14-38 (76)
201 cd02954 DIM1 Dim1 family; Dim1 39.9 1.2E+02 0.0025 20.5 6.3 58 23-84 18-81 (114)
202 cd02957 Phd_like Phosducin (Ph 39.9 50 0.0011 21.7 3.6 64 23-91 28-96 (113)
203 PF06110 DUF953: Eukaryotic pr 39.6 38 0.00083 23.1 2.9 63 28-90 35-108 (119)
204 cd03004 PDI_a_ERdj5_C PDIa fam 39.5 99 0.0022 19.6 5.0 56 22-81 22-83 (104)
205 cd02951 SoxW SoxW family; SoxW 39.2 1.1E+02 0.0025 20.2 6.4 57 22-78 17-89 (125)
206 cd03197 GST_C_mPGES2 GST_C fam 39.2 60 0.0013 23.1 3.9 35 146-180 79-115 (149)
207 TIGR02654 circ_KaiB circadian 38.7 90 0.0019 20.1 4.3 53 22-78 5-62 (87)
208 COG5460 Uncharacterized conser 38.1 1E+02 0.0022 19.3 5.3 32 90-129 18-49 (82)
209 cd02962 TMX2 TMX2 family; comp 37.7 1.5E+02 0.0032 21.0 7.1 59 23-85 51-122 (152)
210 PRK09301 circadian clock prote 37.1 94 0.002 20.7 4.3 53 22-78 8-65 (103)
211 cd03020 DsbA_DsbC_DsbG DsbA fa 36.2 69 0.0015 23.4 4.1 24 20-43 78-101 (197)
212 cd03002 PDI_a_MPD1_like PDI fa 36.1 95 0.0021 19.8 4.4 59 22-82 21-85 (109)
213 cd02956 ybbN ybbN protein fami 35.6 1.1E+02 0.0024 19.0 7.3 57 23-83 16-78 (96)
214 PF10022 DUF2264: Uncharacteri 35.4 40 0.00086 27.7 2.9 94 75-176 99-198 (361)
215 PF07914 DUF1679: Protein of u 35.2 1.7E+02 0.0037 24.5 6.7 63 112-175 289-353 (414)
216 PRK10877 protein disulfide iso 35.1 1.2E+02 0.0027 23.1 5.4 23 22-44 110-132 (232)
217 cd02955 SSP411 TRX domain, SSP 34.1 1.5E+02 0.0033 20.1 5.5 61 23-87 19-97 (124)
218 PF09314 DUF1972: Domain of un 32.9 45 0.00097 24.6 2.6 20 80-99 154-173 (185)
219 cd03212 GST_C_Metaxin1_3 GST_C 32.2 50 0.0011 22.9 2.6 33 147-179 61-98 (137)
220 cd02999 PDI_a_ERp44_like PDIa 31.9 63 0.0014 20.8 3.0 56 23-81 22-82 (100)
221 cd02965 HyaE HyaE family; HyaE 31.5 87 0.0019 21.0 3.6 61 22-86 30-98 (111)
222 cd03022 DsbA_HCCA_Iso DsbA fam 31.0 89 0.0019 22.3 4.0 33 23-55 1-37 (192)
223 KOG2501 Thioredoxin, nucleored 30.8 1E+02 0.0022 22.2 4.0 46 22-67 35-88 (157)
224 PF04659 Arch_fla_DE: Archaeal 29.9 1.7E+02 0.0036 19.3 5.4 42 104-146 11-52 (99)
225 cd02972 DsbA_family DsbA famil 29.7 72 0.0016 19.4 2.9 22 23-44 1-22 (98)
226 TIGR03759 conj_TIGR03759 integ 29.3 1.1E+02 0.0025 22.9 4.1 56 23-78 137-192 (200)
227 PF13462 Thioredoxin_4: Thiore 29.1 81 0.0018 21.7 3.4 29 13-42 7-35 (162)
228 cd03024 DsbA_FrnE DsbA family, 29.1 74 0.0016 23.0 3.3 33 23-55 1-41 (201)
229 KOG2824 Glutaredoxin-related p 29.0 86 0.0019 24.7 3.6 70 21-92 131-210 (281)
230 COG5515 Uncharacterized conser 29.0 62 0.0013 19.3 2.2 21 23-43 3-27 (70)
231 PRK09266 hypothetical protein; 29.0 59 0.0013 25.1 2.8 61 40-100 200-260 (266)
232 cd02987 Phd_like_Phd Phosducin 29.0 1.4E+02 0.003 21.7 4.6 62 23-89 87-153 (175)
233 cd02993 PDI_a_APS_reductase PD 28.9 1.2E+02 0.0026 19.6 4.0 55 21-78 23-83 (109)
234 TIGR01068 thioredoxin thioredo 28.6 1.5E+02 0.0032 18.2 8.8 56 23-82 18-79 (101)
235 COG2761 FrnE Predicted dithiol 27.2 41 0.00089 25.7 1.6 27 22-48 7-37 (225)
236 cd02994 PDI_a_TMX PDIa family, 27.1 1.7E+02 0.0036 18.4 6.3 57 22-82 19-82 (101)
237 COG2897 SseA Rhodanese-related 26.7 79 0.0017 25.1 3.1 29 20-48 90-118 (285)
238 cd02952 TRP14_like Human TRX-r 26.5 2.1E+02 0.0045 19.4 6.8 59 29-87 38-106 (119)
239 cd03211 GST_C_Metaxin2 GST_C f 26.4 96 0.0021 21.0 3.2 32 148-179 55-91 (126)
240 KOG1147 Glutamyl-tRNA syntheta 26.0 62 0.0013 28.3 2.6 44 79-124 43-87 (712)
241 PF13098 Thioredoxin_2: Thiore 25.9 88 0.0019 20.1 2.9 35 22-56 8-49 (112)
242 cd02961 PDI_a_family Protein D 25.7 1.6E+02 0.0035 17.8 6.3 54 21-78 17-76 (101)
243 cd02985 TRX_CDSP32 TRX family, 24.9 1.7E+02 0.0036 18.8 4.1 61 23-84 19-84 (103)
244 cd02996 PDI_a_ERp44 PDIa famil 24.3 2E+02 0.0043 18.4 5.6 56 23-82 22-89 (108)
245 PF14595 Thioredoxin_9: Thiore 23.5 44 0.00096 23.0 1.1 54 22-78 44-102 (129)
246 TIGR01130 ER_PDI_fam protein d 23.1 4.3E+02 0.0093 21.8 8.3 74 22-99 21-110 (462)
247 cd02950 TxlA TRX-like protein 23.0 2.6E+02 0.0057 19.3 6.8 60 23-84 24-90 (142)
248 cd03025 DsbA_FrnE_like DsbA fa 22.8 1.5E+02 0.0033 21.1 4.0 34 22-55 2-41 (193)
249 cd03006 PDI_a_EFP1_N PDIa fami 21.9 2.5E+02 0.0054 18.6 4.7 57 22-82 32-95 (113)
250 PF07689 KaiB: KaiB domain; I 21.7 59 0.0013 20.6 1.3 51 24-78 1-56 (82)
251 PTZ00102 disulphide isomerase; 21.6 4.8E+02 0.01 21.8 8.8 74 22-99 52-139 (477)
252 cd08540 SAM_PNT-ERG Sterile al 21.0 1.1E+02 0.0025 18.9 2.5 15 112-126 10-24 (75)
253 PF11823 DUF3343: Protein of u 20.6 1.6E+02 0.0035 17.7 3.1 29 25-53 5-33 (73)
254 TIGR01764 excise DNA binding d 20.6 1.5E+02 0.0032 15.5 3.4 25 71-95 24-48 (49)
255 cd02995 PDI_a_PDI_a'_C PDIa fa 20.1 80 0.0017 19.8 1.8 53 21-78 20-78 (104)
256 PF15608 PELOTA_1: PELOTA RNA 20.0 2.5E+02 0.0054 18.6 4.0 29 23-51 58-86 (100)
No 1
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-34 Score=200.84 Aligned_cols=160 Identities=43% Similarity=0.690 Sum_probs=142.5
Q ss_pred CCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCC-CCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhC
Q 030071 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG-EQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (183)
+.+.+||+++.|.|++|||++|+.|||+|+.+.|++.++ .....+|++.||.++||+|++||.+|+||.||++||+|.+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 347899999999999999999999999999999999875 3446799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-------CCc
Q 030071 99 PQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-------PRL 171 (183)
Q Consensus 99 ~~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~ 171 (183)
|+++|+|. ++..||.+++....+.+.++|+.+..+...+..+....+ ..|+...+.++|..||+.|.. |+.
T Consensus 83 P~ppLLP~-d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~-~~W~q~~ItkGF~ALEklL~~~aGkycvGDe 160 (217)
T KOG0868|consen 83 PDPPLLPK-DPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG-DQWAQHFITKGFTALEKLLKSHAGKYCVGDE 160 (217)
T ss_pred CCCCCCCc-CHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh-hHHHHHHHHHhHHHHHHHHHHccCCcccCce
Confidence 99999999 999999999999999999999999888887776544333 789999999999999997753 566
Q ss_pred cccceeeecc
Q 030071 172 FERGHIAFMS 181 (183)
Q Consensus 172 ~~~~di~~~~ 181 (183)
++++|++++.
T Consensus 161 vtiADl~L~p 170 (217)
T KOG0868|consen 161 VTIADLCLPP 170 (217)
T ss_pred eehhhhccch
Confidence 7777777654
No 2
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.6e-32 Score=207.34 Aligned_cols=162 Identities=28% Similarity=0.263 Sum_probs=127.1
Q ss_pred CCCCceEEeeeC--CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 18 SSSSKLVLYSYW--QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 18 ~~~~~~~Ly~~~--~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
|+-++++||+.+ .|++|+|++++|+++||+|+.+.+++..++++.++|+++||.|+||+|+++|.+|+||.||++||+
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 456679999965 799999999999999999999999998777788999999999999999999999999999999999
Q ss_pred HhCCCCC---CCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 030071 96 EKYPQRA---LLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTLPRLF 172 (183)
Q Consensus 96 ~~~~~~~---L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~ 172 (183)
++++++. |+|. ++.+|+++++|+.|+++.+.+................+...+..++++.+.+..+|+.|..++.|
T Consensus 81 ~~~~~~~~~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 81 ERFAPPAWERIYPA-DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHcCCCCccccCCC-CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9998765 9999 99999999999999987776543211111111111222334566778899999999998743334
Q ss_pred ccceeeec
Q 030071 173 ERGHIAFM 180 (183)
Q Consensus 173 ~~~di~~~ 180 (183)
..|+|++|
T Consensus 160 l~G~~TlA 167 (214)
T PRK15113 160 LFGEWCIA 167 (214)
T ss_pred eeCCccHH
Confidence 44444443
No 3
>PLN02473 glutathione S-transferase
Probab=99.97 E-value=5e-30 Score=193.50 Aligned_cols=159 Identities=22% Similarity=0.226 Sum_probs=130.5
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCC-
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ- 100 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~- 100 (183)
.||||+++.|++++|++++|+++||+|+.+.+++..+++++++|+++||.|+||+|+++|.+|+||.||++||++++++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 4799999999999999999999999999999998777778999999999999999999999999999999999999975
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHH-HHH---hhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CC
Q 030071 101 -RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLK-YIE---DKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PR 170 (183)
Q Consensus 101 -~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~ 170 (183)
.+|+|. ++.+|+++++|+.+....+.+.....+.. .+. ......+..+....++.+.+..||++|.. |+
T Consensus 82 ~~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 160 (214)
T PLN02473 82 GTDLLGK-TLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGD 160 (214)
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 369999 99999999999999988776643322221 121 11222345666778999999999998863 56
Q ss_pred ccccceeeecc
Q 030071 171 LFERGHIAFMS 181 (183)
Q Consensus 171 ~~~~~di~~~~ 181 (183)
.+|++|+++++
T Consensus 161 ~~t~ADi~~~~ 171 (214)
T PLN02473 161 EFTLADLTHMP 171 (214)
T ss_pred CCCHHHHHHHH
Confidence 78888887654
No 4
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.97 E-value=9.9e-30 Score=191.66 Aligned_cols=149 Identities=23% Similarity=0.304 Sum_probs=121.5
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCC
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ 100 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 100 (183)
++++||+++.||||+|++++|+++|++|+.+.+++. +++++|+++||.|+||+|+++|.+|+||.||++||+++|++
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999863 56789999999999999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccc
Q 030071 101 RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERG 175 (183)
Q Consensus 101 ~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~ 175 (183)
..|+|. ++.+|+++++|+.++...+..... ... ...++..+..++++.+.+..+|+.|.. |+.+|++
T Consensus 86 ~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~A 157 (211)
T PRK09481 86 PPLMPV-YPVARGESRLMMHRIEKDWYSLMN-----KIV--NGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLV 157 (211)
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH-----HHh--cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHH
Confidence 889998 999999999999987765433221 111 122344566778888899999998864 3445555
Q ss_pred eeeec
Q 030071 176 HIAFM 180 (183)
Q Consensus 176 di~~~ 180 (183)
|++++
T Consensus 158 D~~l~ 162 (211)
T PRK09481 158 DCYLA 162 (211)
T ss_pred HHHHH
Confidence 65543
No 5
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-29 Score=189.02 Aligned_cols=137 Identities=28% Similarity=0.352 Sum_probs=119.6
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcC-CCCcccEEEeCCEEeecHHHHHHHHHHhCC
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN-PLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 99 (183)
+.++||+++.|||++|++++|++|||+||.+.+++. .+++++++.| +.+|||||+|+|..|+||..|++||++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhcc
Confidence 569999999999999999999999999999999986 4899999999 789999999999999999999999999999
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhc
Q 030071 100 -QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLT 167 (183)
Q Consensus 100 -~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~ 167 (183)
+++++|. |+.+||+++.|+.+++..+....... ... ..++..+...+.+...|..||+.|.
T Consensus 85 ~~~~iLP~-DPy~Ra~arfwa~~id~~~~~~~~~~----~~~--~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 85 SGPPILPS-DPYERAQARFWAEYIDKKVFFVGRFV----VAA--KGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhHHHHHHHHH----Hhh--cCchHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999 99999999999999998765533221 111 2234467778888999999999998
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-29 Score=189.06 Aligned_cols=156 Identities=37% Similarity=0.402 Sum_probs=132.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCC-EEeecHHHHHHHHHHhCCCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGD-VVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g-~~l~eS~aI~~yL~~~~~~~ 101 (183)
++||+.+.||+++|+++++.++|++|+.+.|++.. +++.++|+++||.|+||+|+++| .+|+||.||++||+++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999986 67889999999999999999655 49999999999999999986
Q ss_pred CCCCCCCHH---HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcC--chHHHHHHHHHHHHHHHHHHhhhcC-----CCc
Q 030071 102 ALLPAADPQ---QRALNLQAASIISSSMQPLHMLSLLKYIEDKFG--PDERLLWVQTHIEKGFLGKFLSLTL-----PRL 171 (183)
Q Consensus 102 ~L~p~~~~~---~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~l~~-----~~~ 171 (183)
.|+|. ++. +|+++..|+.+....+.+.+....... ..... .....+..++.+...+..+|..|.. |+.
T Consensus 80 ~l~p~-~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 157 (211)
T COG0625 80 PLLPA-DPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDR 157 (211)
T ss_pred CcCCC-CchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 69998 664 899999999999999998876655444 22222 3466788899999999999998873 567
Q ss_pred cccceeeecc
Q 030071 172 FERGHIAFMS 181 (183)
Q Consensus 172 ~~~~di~~~~ 181 (183)
||++|+++++
T Consensus 158 ~tiAD~~~~~ 167 (211)
T COG0625 158 FTIADIALAP 167 (211)
T ss_pred CCHHHHHHHH
Confidence 8888887764
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.97 E-value=8.7e-30 Score=192.42 Aligned_cols=155 Identities=25% Similarity=0.254 Sum_probs=122.3
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEe-----CC--EEeecHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-----GD--VVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-----~g--~~l~eS~aI~~yL 94 (183)
|+|||+.+ +++++||+++|+++||+|+.+.+++..++++.++|+++||.|+||+|++ +| .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999765 8999999999999999999999998777778899999999999999996 45 5799999999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----C
Q 030071 95 EEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----P 169 (183)
Q Consensus 95 ~~~~~~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~ 169 (183)
+++++ .+.|. ++.+|+++++|+.|.+..+.+.+..............+...+....++.+.+..||++|.. +
T Consensus 80 ~~~~~--~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 156 (215)
T PRK13972 80 AEKTG--LFLSH-ETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGG 156 (215)
T ss_pred HHhcC--CCCCC-CHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccC
Confidence 99986 36787 8999999999999998888775432110000111112344566777899999999998863 4
Q ss_pred Cccccceeeec
Q 030071 170 RLFERGHIAFM 180 (183)
Q Consensus 170 ~~~~~~di~~~ 180 (183)
+++|++||+++
T Consensus 157 d~~t~ADi~l~ 167 (215)
T PRK13972 157 ENYSIADIACW 167 (215)
T ss_pred CCCCHHHHHHH
Confidence 56777777654
No 8
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.96 E-value=3.3e-28 Score=182.95 Aligned_cols=156 Identities=44% Similarity=0.694 Sum_probs=125.0
Q ss_pred EEeeeCCCchHHHHHHHHHHhCCCceEEEecCCC-CCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCCC
Q 030071 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRA 102 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 102 (183)
+||++..||+++|+|++|+++||+|+.+.+++.. ++++.++++++||.|+||+|+++|.+|+||.||++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 5898899999999999999999999999998632 345678899999999999999999999999999999999999878
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhh--cCchHHHHHHHHHHHHHHHHHHhhhcC-------CCccc
Q 030071 103 LLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDK--FGPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFE 173 (183)
Q Consensus 103 L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~ 173 (183)
|+|. +..+++++++|+.++...+++............. ...+...+...+++.+.+..||++|.. |+.+|
T Consensus 81 l~p~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 81 LLPA-DPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCC-CHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 9998 9999999999999998777664332232222221 122334556677899999999998863 34566
Q ss_pred cceeeec
Q 030071 174 RGHIAFM 180 (183)
Q Consensus 174 ~~di~~~ 180 (183)
++||+++
T Consensus 160 ~ADi~~~ 166 (210)
T TIGR01262 160 LADLCLV 166 (210)
T ss_pred HHHHHHH
Confidence 6676654
No 9
>PLN02395 glutathione S-transferase
Probab=99.96 E-value=1.3e-27 Score=180.30 Aligned_cols=156 Identities=26% Similarity=0.308 Sum_probs=127.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCC--
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ-- 100 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~-- 100 (183)
+|||+. .+++++|++++|+++|++|+.+.+++..+++++++|+++||.|+||+|+++|.+|+||.||++||+++|+.
T Consensus 3 ~~ly~~-~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGP-AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcC-CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 799984 55689999999999999999999998776778899999999999999999999999999999999999975
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHH-H---hhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCc
Q 030071 101 RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYI-E---DKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRL 171 (183)
Q Consensus 101 ~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~ 171 (183)
++|+|. ++.+++++++|+.+.+..+++.+........ . .....++..+...+++.+.+..||++|.. |+.
T Consensus 82 ~~l~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 160 (215)
T PLN02395 82 PDLLGK-TIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDF 160 (215)
T ss_pred cCcCCC-ChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 369999 9999999999999998888765433332221 1 11223344566788899999999998863 456
Q ss_pred cccceeeec
Q 030071 172 FERGHIAFM 180 (183)
Q Consensus 172 ~~~~di~~~ 180 (183)
+|++|++++
T Consensus 161 ~s~ADi~l~ 169 (215)
T PLN02395 161 VSLADLAHL 169 (215)
T ss_pred cCHHHHHHH
Confidence 777777764
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.96 E-value=5e-28 Score=181.02 Aligned_cols=155 Identities=20% Similarity=0.172 Sum_probs=122.9
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (183)
++||+++.||++++++++|+++|++|+.+.++... ..+++.+.||.|+||+|+ ++|.+|+||.||++||++++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999888642 345777889999999998 78899999999999999999887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhc----CCCcccccee
Q 030071 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLT----LPRLFERGHI 177 (183)
Q Consensus 102 ~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~----~~~~~~~~di 177 (183)
.|+|. ++.+++++++|+.+.+..+..................++..+..+.++.+.+..||++|. .+++++++||
T Consensus 78 ~l~p~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~l~Gd~~t~ADi 156 (202)
T PRK10357 78 AMLPR-DPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGTLKTDTVNLATI 156 (202)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCcccCCCcCHHHH
Confidence 89998 999999999999888766654432211111111112234456677889999999999885 2577888888
Q ss_pred eecc
Q 030071 178 AFMS 181 (183)
Q Consensus 178 ~~~~ 181 (183)
++++
T Consensus 157 ~l~~ 160 (202)
T PRK10357 157 AIAC 160 (202)
T ss_pred HHHH
Confidence 7664
No 11
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.95 E-value=5.4e-27 Score=175.21 Aligned_cols=151 Identities=23% Similarity=0.331 Sum_probs=120.9
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCC-CCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGE-QFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQ 100 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~ 100 (183)
|+||+...+ ++++++++|+++||+|+.+.+++..++ .+.++|+++||.|+||+|+ ++|.+|+||.||++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 589987654 899999999999999999999986543 4568999999999999998 6889999999999999999998
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCcccc
Q 030071 101 RALL-PAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFER 174 (183)
Q Consensus 101 ~~L~-p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~ 174 (183)
.+++ |. ++.+|+++++|+.+..+.+.+.+... +. ...+++..+....++.+.+..||+.|.. ++.+++
T Consensus 80 ~~l~~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ 153 (201)
T PRK10542 80 RQLLAPV-GSLSRYHTIEWLNYIATELHKGFTPL----FR-PDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTI 153 (201)
T ss_pred cccCCCC-CcHHHHHHHHHHHHHHhhhhhhhhhc----cC-CCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcH
Confidence 7776 55 78899999999999987776643221 11 1123344566788899999999998864 356777
Q ss_pred ceeeec
Q 030071 175 GHIAFM 180 (183)
Q Consensus 175 ~di~~~ 180 (183)
+|++++
T Consensus 154 ADi~l~ 159 (201)
T PRK10542 154 ADAYLF 159 (201)
T ss_pred HhHHHH
Confidence 777654
No 12
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=180.00 Aligned_cols=159 Identities=33% Similarity=0.346 Sum_probs=136.5
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCC-C
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP-Q 100 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~-~ 100 (183)
+++||++..+++++++.+++.++|++|+.+.+++..+++++++|+++||.|+||+|+++|..++||.||+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999996 3
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHcccchhH--HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCcc
Q 030071 101 RA-LLPAADPQQRALNLQAASIISSSMQPLH--MLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLF 172 (183)
Q Consensus 101 ~~-L~p~~~~~~ra~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~ 172 (183)
.. |+|. +..+|+.+.+|+.+.++.+.+.. ...+.+............+.....+...+..+|..|.. ++++
T Consensus 82 ~~~l~p~-~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 82 GGILLPK-DLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CcccCCc-CHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 44 8999 99999999999999999998863 33333323333334566778888999999999987765 5778
Q ss_pred ccceeeecc
Q 030071 173 ERGHIAFMS 181 (183)
Q Consensus 173 ~~~di~~~~ 181 (183)
++||+++++
T Consensus 161 tlADl~~~~ 169 (226)
T KOG0867|consen 161 TLADLSLAS 169 (226)
T ss_pred cHHHHHHhh
Confidence 888888765
No 13
>PRK11752 putative S-transferase; Provisional
Probab=99.95 E-value=2.5e-26 Score=178.56 Aligned_cols=155 Identities=26% Similarity=0.285 Sum_probs=121.2
Q ss_pred CceEEeeeCCCchHHHHHHHHHHh------CCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC----CEEeecHHHH
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLK------GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG----DVVVSDSYAI 90 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~----g~~l~eS~aI 90 (183)
.+++||+. .||+++||+++|+|+ |++|+.+.|++..++++.++|+++||.|+||+|+++ |.+|+||.||
T Consensus 43 ~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 43 HPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 46999985 699999999999997 999999999987777778999999999999999953 3799999999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHH-hhcCchHHHHHHHHHHHHHHHHHHhhhcC-
Q 030071 91 LLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIE-DKFGPDERLLWVQTHIEKGFLGKFLSLTL- 168 (183)
Q Consensus 91 ~~yL~~~~~~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~- 168 (183)
++||+++++ +|+|. ++.+|+++++|+.|....+ +.....+..... .....+...+....++.+.|..||++|..
T Consensus 122 l~YL~~~~~--~L~P~-~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~ 197 (264)
T PRK11752 122 LLYLAEKFG--AFLPK-DLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH 197 (264)
T ss_pred HHHHHHhcC--CcCCC-CHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999997 49998 9999999999999987654 222111111111 11112234556677888999999998863
Q ss_pred ----CCccccceeeec
Q 030071 169 ----PRLFERGHIAFM 180 (183)
Q Consensus 169 ----~~~~~~~di~~~ 180 (183)
++.|+++||+++
T Consensus 198 ~fl~Gd~~TlADi~l~ 213 (264)
T PRK11752 198 EYIAGDEYTIADIAIW 213 (264)
T ss_pred CCCCCCccCHHHHHHH
Confidence 567888888764
No 14
>PRK10387 glutaredoxin 2; Provisional
Probab=99.91 E-value=5.5e-24 Score=159.94 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=107.3
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (183)
||||++..||+|+|++++|+++||+|+.+.++.. ++.. ..+.||.|+||+|+ ++|..|+||.||++||+++|+++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~--~~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND--DEAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC--chhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 5899999999999999999999999999888642 1222 25789999999995 88999999999999999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHH-------------H----Hhhc-Cch---HHHHHHHHHHHHHHH
Q 030071 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKY-------------I----EDKF-GPD---ERLLWVQTHIEKGFL 160 (183)
Q Consensus 102 ~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~-------------~----~~~~-~~~---~~~~~~~~~~~~~l~ 160 (183)
.+. . .+++.++.|+.+....+...+....... + .... ..+ +..+...+++++.|.
T Consensus 77 ~l~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (210)
T PRK10387 77 LLT-G---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLR 152 (210)
T ss_pred cCC-C---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHH
Confidence 443 2 2578889998887655543321111000 0 0000 000 011356778899999
Q ss_pred HHHhhhcC----CCccccceeeecc
Q 030071 161 GKFLSLTL----PRLFERGHIAFMS 181 (183)
Q Consensus 161 ~le~~l~~----~~~~~~~di~~~~ 181 (183)
.+|+.|.. |+.++++||+++.
T Consensus 153 ~le~~L~~~~l~G~~~s~ADi~l~~ 177 (210)
T PRK10387 153 ALDPLIVKPNAVNGELSTDDIHLFP 177 (210)
T ss_pred HHHHHhcCccccCCCCCHHHHHHHH
Confidence 99998863 5667777777653
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.89 E-value=3.6e-22 Score=150.71 Aligned_cols=132 Identities=23% Similarity=0.195 Sum_probs=98.1
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCCCCCCCCC
Q 030071 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~ 108 (183)
..||||+|++++|+++|++|+.+.+++. .++++|+++||.|+||+|+++|.+|+||.||++||+++|++..+ . +
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~-~ 91 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--K-T 91 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--C-C
Confidence 5699999999999999999999999985 45779999999999999999999999999999999999987555 3 5
Q ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-------CCccccceeeecc
Q 030071 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFERGHIAFMS 181 (183)
Q Consensus 109 ~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~di~~~~ 181 (183)
+.+++++..++. +.+.. +.... ... +...+.+.+.+..||++|.. ++.+|++|+++++
T Consensus 92 ~~~~a~i~~~~~-------~~~~~----~~~~~-~~~---~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~ 156 (213)
T PLN02378 92 PAEFASVGSNIF-------GTFGT----FLKSK-DSN---DGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAP 156 (213)
T ss_pred HHHHHHHHHHHH-------HHHHH----HHhcC-Chh---hHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHH
Confidence 577777655432 11111 11111 111 22335667778888888852 4567777777654
No 16
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.89 E-value=8e-23 Score=128.84 Aligned_cols=73 Identities=44% Similarity=0.584 Sum_probs=68.8
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
++||+++.|++++|++++|+++|++|+.+.+++..++++.++|+++||.|+||+|+++|..|+||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999987766778899999999999999999999999999999985
No 17
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.89 E-value=1.5e-22 Score=152.39 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=102.3
Q ss_pred EEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCCCC
Q 030071 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQRA 102 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~ 102 (183)
|||++..||||+|+|++|+++|++|+.+.+... ++ ....+.||.|+||+|+ ++|..|+||.+|++||+++|+++.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DE--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cc--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 689999999999999999999999998876432 22 2347899999999998 899999999999999999998644
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhHHHHHH-------------HHHHhh-----cCch---HHHHHHHHHHHHHHHH
Q 030071 103 LLPAADPQQRALNLQAASIISSSMQPLHMLSLL-------------KYIEDK-----FGPD---ERLLWVQTHIEKGFLG 161 (183)
Q Consensus 103 L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~-----~~~~---~~~~~~~~~~~~~l~~ 161 (183)
+.|. +++++++|+.++...+...+...+. ..+..+ ...+ ...+...+.+++.++.
T Consensus 77 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 152 (209)
T TIGR02182 77 LTGK----VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEE 152 (209)
T ss_pred CCCC----ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHH
Confidence 4332 4667788887655544332211110 000000 0000 0013456778888999
Q ss_pred HHhhhcCC----Cccccceeeec
Q 030071 162 KFLSLTLP----RLFERGHIAFM 180 (183)
Q Consensus 162 le~~l~~~----~~~~~~di~~~ 180 (183)
+|+.|..+ +.+|++||+++
T Consensus 153 le~~L~~~~~l~g~~TiADi~l~ 175 (209)
T TIGR02182 153 LDKLIDGPNAVNGELSEDDILVF 175 (209)
T ss_pred HHHHHhCccccCCCCCHHHHHHH
Confidence 99988643 34566666655
No 18
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=147.01 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=98.5
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhh--------hcCCCCcccEEEeCCEEeecHHHHHH
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE--------ELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~--------~~~P~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
++++||+++.+++++++|++|+++|++|+.+.++. .. ++++ +.||+|+||+|++||.+|+||.||++
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~----~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE----NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc----cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 34999999999999999999999999999986642 22 2333 47999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-ccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC---
Q 030071 93 YLEEKYPQRALLPAADPQQRALNLQAASIISS-SMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL--- 168 (183)
Q Consensus 93 yL~~~~~~~~L~p~~~~~~ra~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--- 168 (183)
||+++++ +.+. +..++ +..|..+... .+...+.. ..... +...+.....+++.+..||+.|..
T Consensus 78 YLa~~~~---~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~l~~le~~L~~~~~ 144 (205)
T PTZ00057 78 YLSKKYK---ICGE-SELNE--FYADMIFCGVQDIHYKFNN--TNLFK-----QNETTFLNEELPKWSGYFENILKKNHC 144 (205)
T ss_pred HHHHHcC---CCCC-CHHHH--HHHHHHHHHHHHHHHHHhh--hHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999997 5555 54444 4444433321 22111100 01111 122345678899999999998863
Q ss_pred ----CCccccceeeec
Q 030071 169 ----PRLFERGHIAFM 180 (183)
Q Consensus 169 ----~~~~~~~di~~~ 180 (183)
|+.+|++||+++
T Consensus 145 ~~l~Gd~~T~AD~~l~ 160 (205)
T PTZ00057 145 NYFVGDNLTYADLAVF 160 (205)
T ss_pred CeeeCCcccHHHHHHH
Confidence 345566666544
No 19
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.88 E-value=1.4e-21 Score=148.74 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=90.8
Q ss_pred eCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCC---CCCC
Q 030071 28 YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ---RALL 104 (183)
Q Consensus 28 ~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~---~~L~ 104 (183)
...||+|+|++++|.++||+|+.+.+++. .++++|+++||.|+||+|+++|.+|+||.+|++||+++|++ +.+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~---~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK---RKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC---CCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC
Confidence 36899999999999999999999999986 45789999999999999999999999999999999999975 4466
Q ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhc
Q 030071 105 PAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLT 167 (183)
Q Consensus 105 p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~ 167 (183)
|. ++..++.... +.+.+.. +... ..++..+...+.+.+.++.||+.|.
T Consensus 93 p~-~~~~~~~~~~--------l~~~~~~----~~~~--~~~~~~~~~~~~l~~~l~~Le~~L~ 140 (236)
T TIGR00862 93 PK-HPESNTAGLD--------IFAKFSA----YIKN--SNPEANDNLEKGLLKALKKLDDYLN 140 (236)
T ss_pred CC-CHHHHHHHHH--------HHHHHHH----HHHc--CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 6555443211 1121111 1111 1223334556668888888888775
No 20
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.87 E-value=5.6e-22 Score=125.70 Aligned_cols=74 Identities=50% Similarity=0.710 Sum_probs=69.5
Q ss_pred EeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCC
Q 030071 25 LYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 25 Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 101 (183)
||++..||||+|+|++|+++||+|+.+.++.. .+.+++.+.||.|+||+|++||.+|+||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE---EKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT---STSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc---cchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999864 457899999999999999999999999999999999999864
No 21
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.87 E-value=5.5e-22 Score=125.26 Aligned_cols=74 Identities=45% Similarity=0.585 Sum_probs=69.4
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
++||+++.||+|++++++|+++|++|+.+.+++..++++.++|++.||.|+||+|+++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999999876666789999999999999999999999999999999975
No 22
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.87 E-value=1e-21 Score=126.31 Aligned_cols=77 Identities=44% Similarity=0.647 Sum_probs=70.5
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC---CEEeecHHHHHHHHHHhC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG---DVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~---g~~l~eS~aI~~yL~~~~ 98 (183)
|++||+++. |+|+|++++|+++|++|+.+.+++..++.+.++|++.||.|+||+|+++ |..|+||.||++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 489999765 9999999999999999999999986666778999999999999999976 899999999999999998
Q ss_pred C
Q 030071 99 P 99 (183)
Q Consensus 99 ~ 99 (183)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 23
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.87 E-value=2.7e-21 Score=150.00 Aligned_cols=131 Identities=23% Similarity=0.240 Sum_probs=97.9
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCCCCCCCCC
Q 030071 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~ 108 (183)
..|||++|++++|+++||+|+.+.+++. .++++|+++||.|+||+|+++|.+|+||.+|++||+++|+++.|. +
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~---~ 144 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA---T 144 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC---C
Confidence 3599999999999999999999999874 467899999999999999988899999999999999999986663 4
Q ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC------CCccccceeeec
Q 030071 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL------PRLFERGHIAFM 180 (183)
Q Consensus 109 ~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~------~~~~~~~di~~~ 180 (183)
+.+++++.+|+.. .+. ..+... .+.. ...+.+...+..||++|.. |+.++++|++++
T Consensus 145 ~~era~i~~~l~~-------~~~----~~~~~~-~~~~---~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~ 207 (265)
T PLN02817 145 PPEKASVGSKIFS-------TFI----GFLKSK-DPGD---GTEQALLDELTSFDDYIKENGPFINGEKISAADLSLG 207 (265)
T ss_pred HHHHHHHHHHHHH-------HHH----HHhccC-Ccch---HHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHH
Confidence 5788888876531 111 111111 1111 1234566778888888863 455666666654
No 24
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.87 E-value=1.2e-21 Score=124.47 Aligned_cols=76 Identities=45% Similarity=0.676 Sum_probs=70.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (183)
++||+++.|+++++++++|+++|++|+.+.++...++...++|++.||.|+||+|+++|..|+||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999987666667899999999999999999999999999999999875
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.86 E-value=2.3e-21 Score=123.09 Aligned_cols=76 Identities=46% Similarity=0.625 Sum_probs=70.0
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHh
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (183)
.++||+++.||+|+|+|++|+++|++|+.+.++...++++.++|++.||.|+||+|+++|..|+||.||++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3799999999999999999999999999999988655567789999999999999999999999999999999874
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.86 E-value=3.4e-21 Score=121.25 Aligned_cols=73 Identities=40% Similarity=0.550 Sum_probs=68.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (183)
|+||+.+.||+|+|++++|+++|++|+.+.++.. ++.++|++.||.|+||+|+++|..++||.||++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999998864 567899999999999999999999999999999999875
No 27
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.85 E-value=2.7e-21 Score=123.19 Aligned_cols=75 Identities=29% Similarity=0.233 Sum_probs=66.6
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEe--CCEEeecHHHHHHHHHHhC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD--GDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~eS~aI~~yL~~~~ 98 (183)
|++||+++.||+|+|++++|+++||+|+.+.+.. +++..+++++.||.|+||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 4799999999999999999999999999988753 2335678999999999999995 4789999999999999975
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.85 E-value=6.6e-21 Score=120.41 Aligned_cols=73 Identities=36% Similarity=0.576 Sum_probs=67.4
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCC-CcccEEEeCCEEeecHHHHHHHHHHhC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-HFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (183)
|+||+++.||+|+|+|++|+++|++|+.+.++.. .+.++|++.||. |+||+|+++|..++||.||++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999988864 567899999995 999999999999999999999999874
No 29
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.85 E-value=6.4e-21 Score=120.16 Aligned_cols=73 Identities=38% Similarity=0.448 Sum_probs=67.3
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
++||+++.|+++++++++|+++|++|+.+.++...++.+.++|++.||.|+||+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999999875555677899999999999999999999999999999984
No 30
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.85 E-value=7.2e-21 Score=119.67 Aligned_cols=73 Identities=44% Similarity=0.649 Sum_probs=68.1
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
++||+++.||+|++++++|+++|++|+.+.+++..++++.++|++.||.|++|+|+++|..|+||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999886666678999999999999999999999999999999984
No 31
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.85 E-value=8.1e-21 Score=123.54 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=65.0
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCC
Q 030071 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 101 (183)
..||||+|+|++|++|||+|+.+.+++. .++++|+++||.|+||+|+++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5789999999999999999999999975 467899999999999999999999999999999999998753
No 32
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.84 E-value=1.2e-20 Score=120.01 Aligned_cols=76 Identities=36% Similarity=0.467 Sum_probs=68.8
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC-CEEeecHHHHHHHHHHhCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 99 (183)
++||+++.+ ++++++++|+++|++|+.+.++...++++.++|++.||.|+||+|+++ |..|+||.||++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589988765 689999999999999999999987666778999999999999999965 8999999999999999885
No 33
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.84 E-value=1.7e-20 Score=118.96 Aligned_cols=76 Identities=49% Similarity=0.735 Sum_probs=69.1
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 99 (183)
++||+++. +++++++++|+++|++|+.+.++...++.+.++|++.||.++||+|+++|..|+||.||++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58998765 68999999999999999999998765566789999999999999999999999999999999999875
No 34
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.84 E-value=1.4e-20 Score=119.23 Aligned_cols=72 Identities=29% Similarity=0.359 Sum_probs=66.6
Q ss_pred EEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEe-CCEEeecHHHHHHHHHH
Q 030071 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEE 96 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~ 96 (183)
+||+++.|+++++++++|+++|++|+.+.+++..+ ++.++|+++||.|+||+|++ +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999997543 67899999999999999995 68999999999999986
No 35
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.84 E-value=1.5e-20 Score=118.36 Aligned_cols=73 Identities=44% Similarity=0.545 Sum_probs=67.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~ 95 (183)
++||+++.||+|+|+|++|+++|++|+.+.+++..++.+.++|.+.||.|+||+|+ ++|..|+||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999998865555678899999999999999 68899999999999985
No 36
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.84 E-value=2.1e-20 Score=117.63 Aligned_cols=73 Identities=55% Similarity=0.910 Sum_probs=68.2
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
++||++..|++++++|++|+++|++|+.+.+++..++++.++|++.||.|++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987666678899999999999999999999999999999985
No 37
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.83 E-value=3.5e-20 Score=117.71 Aligned_cols=73 Identities=45% Similarity=0.618 Sum_probs=63.6
Q ss_pred EEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCC-CcccEEEeC-CEEeecHHHHHHHHHH
Q 030071 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-HFVPVLVDG-DVVVSDSYAILLYLEE 96 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~-g~vP~L~~~-g~~l~eS~aI~~yL~~ 96 (183)
+|+.++..++++++|++|+++|++|+.+.+++..++++.++|++.||. |+||+|+++ |..|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 444445666999999999999999999999987777778999999999 999999988 9999999999999985
No 38
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.83 E-value=2.1e-20 Score=117.82 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=65.7
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHh
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (183)
++||+++.|++++++|++|+++|++|+.+.++.. +..+++++.||.|+||+|+++|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 7999999999999999999999999999999862 34567999999999999999999999999999999863
No 39
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.82 E-value=5.2e-20 Score=115.37 Aligned_cols=68 Identities=32% Similarity=0.514 Sum_probs=63.1
Q ss_pred EEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEe-CCEEeecHHHHHHHH
Q 030071 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYL 94 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL 94 (183)
+||+++.||||+|++++|+++|++|+.+.+++. .+.++|++.||.|+||+|++ ||..|+||.||++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999874 35689999999999999996 599999999999997
No 40
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.82 E-value=8.4e-20 Score=119.41 Aligned_cols=85 Identities=27% Similarity=0.293 Sum_probs=71.3
Q ss_pred Ccccccccc--CCCCCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC-CEEe
Q 030071 8 DDQIDIGIN--SSSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVV 84 (183)
Q Consensus 8 ~~~~~~~~~--~~~~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-g~~l 84 (183)
|++++.+.. ....++++||+.+.||+|+|++++|+++|++|+.+.++.. ...+++++.||.++||+|+++ |..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~---~~~~~~~~~np~~~vPvL~~~~g~~l 78 (89)
T cd03055 2 SKHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK---DKPDWFLEKNPQGKVPALEIDEGKVV 78 (89)
T ss_pred ccccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC---CCcHHHHhhCCCCCcCEEEECCCCEE
Confidence 455555554 1224569999999999999999999999999999999864 345679999999999999965 8999
Q ss_pred ecHHHHHHHHH
Q 030071 85 SDSYAILLYLE 95 (183)
Q Consensus 85 ~eS~aI~~yL~ 95 (183)
+||.||++||+
T Consensus 79 ~eS~aI~~yLe 89 (89)
T cd03055 79 YESLIICEYLD 89 (89)
T ss_pred ECHHHHHHhhC
Confidence 99999999985
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.82 E-value=4.3e-20 Score=116.03 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=64.4
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
++||+++.+++|+++|++|+++|++|+.+.++... ...++|.+.||.|+||+|+++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~--~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE--WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH--hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988642 2334588999999999999999999999999999974
No 42
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.81 E-value=1.7e-19 Score=116.14 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=64.7
Q ss_pred EEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCC-Chhhhhc-----CCCCcccEEEeCCEEeecHHHHHHHHHHh
Q 030071 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQF-SPEFEEL-----NPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~-~~~~~~~-----~P~g~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (183)
+||++..+++|++++++|+++|++|+.+.+++..+++. .+++++. +|+|+||+|+++|..|+||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 78999999999999999999999999999998655433 3455432 29999999999999999999999999987
Q ss_pred C
Q 030071 98 Y 98 (183)
Q Consensus 98 ~ 98 (183)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 43
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.80 E-value=2.1e-19 Score=112.54 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=61.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC-CEEeecHHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-g~~l~eS~aI~~yL~~ 96 (183)
|+||++..||+|+|+|++|+++|++|+.+.++.. .....++.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~----~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND----DEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC----chHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999988742 12345678999999999965 8999999999999975
No 44
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=2.3e-19 Score=112.93 Aligned_cols=70 Identities=29% Similarity=0.236 Sum_probs=64.0
Q ss_pred eEEeeeCCCchHHHHHHHHHH--hCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKL--KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~--~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~ 95 (183)
++||+++.||+|+|+|++|++ +|++|+.+.++.. .+.++|++.||.|+||+|+ ++|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988753 4678999999999999998 68899999999999985
No 45
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.79 E-value=7.9e-19 Score=112.25 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=62.6
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhc-----CCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEEL-----NPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
+++||+++.++++++++++|+++|++|+.+.++.. +++.+. .|.|+||+|++||..|+||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 36899999999999999999999999999988742 233333 3699999999999999999999999999
Q ss_pred hCC
Q 030071 97 KYP 99 (183)
Q Consensus 97 ~~~ 99 (183)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 986
No 46
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.79 E-value=6.3e-19 Score=110.14 Aligned_cols=68 Identities=57% Similarity=0.747 Sum_probs=58.2
Q ss_pred CCchHHHHHHHHHHhCCCceEEEecCC-CCCCCChhhhhcCCCCcccEEEe-CCEEeecHHHHHHHHHHh
Q 030071 30 QSSCSWRVRFALKLKGLIYEYKAVDLS-KGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~v~~~-~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 97 (183)
.|||++|++++|+++|++|+...+... .+..+.++|.+.||.|+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 489999999999999999999888543 24456689999999999999995 899999999999999974
No 47
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.79 E-value=7.1e-19 Score=113.76 Aligned_cols=70 Identities=40% Similarity=0.599 Sum_probs=60.9
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC-CEEeecHHHHHHHHHHhCC
Q 030071 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 99 (183)
..||+|+|+|++|+++|++|+.+.++....+...+++ +.||.|+||+|+++ |..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6899999999999999999999999875433333445 78999999999987 8999999999999999875
No 48
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.78 E-value=1.3e-18 Score=110.13 Aligned_cols=68 Identities=29% Similarity=0.369 Sum_probs=61.4
Q ss_pred ceEEeeeC-------CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHH
Q 030071 22 KLVLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL 94 (183)
|++||++. .||+|+|++++|+++|++|+.+.++. .+.||.|+||+|+++|..|+||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 47899987 68999999999999999999987753 26899999999999999999999999999
Q ss_pred HHhCC
Q 030071 95 EEKYP 99 (183)
Q Consensus 95 ~~~~~ 99 (183)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 49
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.77 E-value=3e-18 Score=108.96 Aligned_cols=72 Identities=26% Similarity=0.315 Sum_probs=62.3
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeC----CEEeecHHHHHHHHHHh
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG----DVVVSDSYAILLYLEEK 97 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~----g~~l~eS~aI~~yL~~~ 97 (183)
+++||+++.||||+|++++|+++||+|+.+.++.. ..++ .+.||.++||+|+++ |.+|+||.+|++||+++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~----~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV----SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch----hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 48999999999999999999999999999988642 1223 467999999999954 88999999999999987
Q ss_pred C
Q 030071 98 Y 98 (183)
Q Consensus 98 ~ 98 (183)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 50
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-17 Score=124.01 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=110.1
Q ss_pred CCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCC
Q 030071 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 99 (183)
|+.+||++++..++++.+|++++..|++||++.+... +..+..+...|+|++|+|..||..|.||.||++||+++|+
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~---~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITME---DAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccc---cchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 4568999999999999999999999999999999853 1123445558999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHH-HHHHHHHHHHHHHHhhhcC-------CCc
Q 030071 100 QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLL-WVQTHIEKGFLGKFLSLTL-------PRL 171 (183)
Q Consensus 100 ~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~l~~-------~~~ 171 (183)
|.+. ++.|+++++.+.+-+.......+...+.....+ ..++.++ .......+.+..+++.|.. ++.
T Consensus 78 ---l~Gk-t~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g--~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~ 151 (206)
T KOG1695|consen 78 ---LAGK-TEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAG--KSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDK 151 (206)
T ss_pred ---cCCC-CHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhc--cchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCc
Confidence 9999 999999999888877654433232222211111 1222222 4444555666666666652 455
Q ss_pred cccceeeec
Q 030071 172 FERGHIAFM 180 (183)
Q Consensus 172 ~~~~di~~~ 180 (183)
+|.+|+.++
T Consensus 152 lT~aDl~i~ 160 (206)
T KOG1695|consen 152 LTWADLVIA 160 (206)
T ss_pred ccHHHHHHH
Confidence 666666554
No 51
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.8e-18 Score=106.64 Aligned_cols=67 Identities=40% Similarity=0.419 Sum_probs=60.8
Q ss_pred eCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 28 YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 28 ~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
...|++++|++++|+++|++|+.+.+++..+ .+.++|++.||.|+||+|+++|..|+||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4688999999999999999999999987543 356899999999999999999999999999999984
No 52
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.70 E-value=9e-17 Score=99.28 Aligned_cols=71 Identities=54% Similarity=0.720 Sum_probs=63.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
++||+++.||+|++++++|+++|++|+.+.++.... ...++.+.+|.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEG--EQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCC--CCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 489999999999999999999999999999986432 12258899999999999999999999999999984
No 53
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.70 E-value=1.3e-16 Score=119.73 Aligned_cols=93 Identities=38% Similarity=0.497 Sum_probs=83.7
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCC-C
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ-R 101 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~-~ 101 (183)
+.||+++.|--++|||++++||||+|+...|++..+++..++|..+||.|.||||+++..+|.++.-|++|++..|.+ .
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999975 5
Q ss_pred CCCCCCCHHHHHHH
Q 030071 102 ALLPAADPQQRALN 115 (183)
Q Consensus 102 ~L~p~~~~~~ra~~ 115 (183)
.|.|..+..+..++
T Consensus 107 ~l~pe~~S~~~d~~ 120 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRV 120 (325)
T ss_pred cccccccccccHHH
Confidence 57776444443333
No 54
>PLN02907 glutamate-tRNA ligase
Probab=99.68 E-value=4.8e-16 Score=134.48 Aligned_cols=118 Identities=14% Similarity=-0.006 Sum_probs=95.2
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (183)
++||+.+.+ ++.++.++|++.|++|+.+. .+|.|+||+|+ ++|..|+||.||++||++.+++.
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 789976555 68889999999999999863 25899999999 68999999999999999999888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccce
Q 030071 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGH 176 (183)
Q Consensus 102 ~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~d 176 (183)
.|+|. ++.+++++++|+.|...... . ..+...+..||++|.. |+.+|+||
T Consensus 67 ~L~p~-d~~erAqV~qWL~~~~~~~~-----------------~-------~~l~~~L~~LE~~L~~rtYLvGd~lTLAD 121 (722)
T PLN02907 67 GFYGQ-DAFESSQVDEWLDYAPTFSS-----------------G-------SEFENACEYVDGYLASRTFLVGYSLTIAD 121 (722)
T ss_pred CCCCC-CHHHHHHHHHHHHHHhhccc-----------------H-------HHHHHHHHHHHHHhccCCeecCCCCCHHH
Confidence 89999 99999999999998764210 0 1234567778877653 56788888
Q ss_pred eeecc
Q 030071 177 IAFMS 181 (183)
Q Consensus 177 i~~~~ 181 (183)
|++++
T Consensus 122 IaL~~ 126 (722)
T PLN02907 122 IAIWS 126 (722)
T ss_pred HHHHH
Confidence 88754
No 55
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.67 E-value=4.4e-16 Score=97.67 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=53.3
Q ss_pred CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHh
Q 030071 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (183)
.||+|++++++|+++||+|+.+.++.. ..||.|+||+|+++|..+.||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 899999999999999999999988742 1789999999999999999999999999874
No 56
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-14 Score=103.36 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=73.4
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (183)
|+||-+.+||||.|+|+++..+|||++.+...-. ..+.-..+-...+||+|+ +||..+.||..|.+|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nD----De~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLND----DEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccC----cccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 5899999999999999999999999998877532 112223455678999999 99999999999999999998864
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHccc
Q 030071 102 ALLPAADPQQRALNLQAASIISSSM 126 (183)
Q Consensus 102 ~L~p~~~~~~ra~~~~~~~~~~~~l 126 (183)
-|-.. -+-.++.|+.-+....
T Consensus 77 ~lt~~----~~pai~~wlrkv~~y~ 97 (215)
T COG2999 77 LLTGK----VRPAIEAWLRKVNGYL 97 (215)
T ss_pred hhccC----cCHHHHHHHHHhcchH
Confidence 44333 2444666666555443
No 57
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.50 E-value=8.8e-14 Score=87.06 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=52.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHh
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (183)
..|+ +.+++|.|++++|++.|++|+.+.+. ..++ .+|.|+||+|++||.+|+||.||+.||.++
T Consensus 11 ~~~~--~~~~~~~kv~~~L~elglpye~~~~~-------~~~~--~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILL--PDNASCLAVQTFLKMCNLPFNVRCRA-------NAEF--MSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeec--CCCCCHHHHHHHHHHcCCCcEEEecC-------Cccc--cCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4455 57889999999999999999988421 1122 567899999999999999999999999864
No 58
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.7e-11 Score=89.72 Aligned_cols=131 Identities=25% Similarity=0.203 Sum_probs=91.1
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCCCCCCCCC
Q 030071 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~ 108 (183)
--||||+|..+.|.++|++|....|+.. .++++|+++.|.|++|+|..||.+++||..|-++|++.++++++.-- .
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~-~ 94 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTL-A 94 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCccc-C
Confidence 3689999999999999999999999986 46888999999999999999999999999999999999998665332 2
Q ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC--CCccccce
Q 030071 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL--PRLFERGH 176 (183)
Q Consensus 109 ~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~~~~~d 176 (183)
+.|.+.+-. .++.-+..++.+ ..+..-+.....+-..|..|++.|.. .++|..||
T Consensus 95 ~~E~asag~-------diF~kF~~fi~k------sk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd 151 (221)
T KOG1422|consen 95 PPESASAGS-------DIFAKFSAFIKK------SKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGD 151 (221)
T ss_pred CHHHHhhHH-------HHHHHHHHHHhC------chhhccchHHHHHHHHHHHHHHHhcCccCCccccCC
Confidence 344433321 122222111111 11112233444555556778888874 35555553
No 59
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.29 E-value=2e-11 Score=77.85 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
.++++||+.+.||+|.+++-+|+..|++|+.+.++.. ....++...++..+||++..+|..+.++..|.+||+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 4579999999999999999999999999999888642 223456677888999999999999999999999984
No 60
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.23 E-value=7.4e-11 Score=89.95 Aligned_cols=70 Identities=27% Similarity=0.344 Sum_probs=59.0
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
.++||.+..||||.|||..|.+.||+|+.++|++.. ..+ .+.+-+.|||+|..+|..+.||.+|+.-|+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~----r~e-Ik~SsykKVPil~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL----RQE-IKWSSYKKVPILLIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh----hhh-ccccccccccEEEeccceechhHHHHHHHHH
Confidence 589999999999999999999999999999999742 122 3345688999999878889999999877643
No 61
>PRK10638 glutaredoxin 3; Provisional
Probab=99.20 E-value=7.8e-11 Score=75.79 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=62.5
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
+.++||+.+.||+|.+++.+|+++|++|+.+.++... ....++.+.+|..+||+++.+|..+.....+..+-.
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 4699999999999999999999999999999887431 134667889999999999999999999988877543
No 62
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.09 E-value=7.3e-10 Score=69.23 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=60.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
+++||+.+.||+|.+++-+|+..|++|+.+.++.. .....+.......+||++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~---~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKD---ITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCC---hhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999988742 122345566788899999999999999999999974
No 63
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.04 E-value=1.8e-09 Score=67.68 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHh
Q 030071 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (183)
..||+|.++.+.|+..|++|+.+... . -..+|.||+|+|+++|..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-------n---~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-------N---PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-------C---CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 35699999999999999999877432 1 13568999999999999999999999999875
No 64
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=4.4e-09 Score=65.31 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=57.4
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEe--ecHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV--SDSYAILLYL 94 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l--~eS~aI~~yL 94 (183)
+++||+...||+|++++.+|+++|++|..+.++.. .....++.+.++...||+|+.+|..+ .++.+|-++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999998877632 12234567789999999999888877 6777777665
No 65
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.90 E-value=6.3e-09 Score=65.14 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=56.0
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAI 90 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI 90 (183)
.++||+.+.||+|++++.+|+++||+|+.+.+... ....+++.++++..++|++..+|..+..-...
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 58999999999999999999999999999988742 12345788899999999999998887655444
No 66
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.86 E-value=1.6e-07 Score=71.41 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=71.6
Q ss_pred CceEEeeeC-------CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 21 SKLVLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 21 ~~~~Ly~~~-------~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
..+-||.++ .||||.|+...|+..+||||.+.-. ....++.|++|.++-+|+.+.+|.-|..+
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~----------~~~rSr~G~lPFIELNGe~iaDS~~I~~~ 113 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS----------LKRRSRNGTLPFIELNGEHIADSDLIEDR 113 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc----------ceeeccCCCcceEEeCCeeccccHHHHHH
Confidence 356777755 7899999999999999999988543 23567899999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 030071 94 LEEKYPQRALLPAADPQQRALNLQAASIIS 123 (183)
Q Consensus 94 L~~~~~~~~L~p~~~~~~ra~~~~~~~~~~ 123 (183)
|.+++.-+..+|. .+||+.+.....++
T Consensus 114 L~~hf~~~~~L~~---e~~a~s~Al~rm~d 140 (281)
T KOG4244|consen 114 LRKHFKIPDDLSA---EQRAQSRALSRMAD 140 (281)
T ss_pred HHHHcCCCCCCCH---HHHHHHHHHHHHHH
Confidence 9999985443443 66776666655444
No 67
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.85 E-value=8.3e-09 Score=63.92 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=51.9
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeec
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSD 86 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~e 86 (183)
+++|+.++||+|.+++.+|.++|++|+.+.++.. ....+++.+.||.+++|+|+.+|..+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 7899999999999999999999999999887642 1234577788999999999988866544
No 68
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.83 E-value=1.9e-08 Score=62.01 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=59.1
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
++++|+.+.||+|++++.+|+.+|++|+.+.+... .....++.+.++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 37899999999999999999999999998877642 12345667789999999999999999999888764
No 69
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.78 E-value=2.5e-08 Score=63.74 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=47.8
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEe
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV 84 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l 84 (183)
+++||+.+.||+|.+++-+|+++||+|+.+.++-. ....+.+..++..+||+++.+|..+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~~g~~~vPvv~i~~~~~ 61 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRAQGFRQLPVVIAGDLSW 61 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCCCcCEEEECCEEE
Confidence 58999999999999999999999999999988732 1112233446899999999777543
No 70
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.76 E-value=3.4e-08 Score=62.03 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=51.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcC-CCCcccEEE-eCCEEeecH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN-PLHFVPVLV-DGDVVVSDS 87 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-P~g~vP~L~-~~g~~l~eS 87 (183)
+++||+..+||+|++++-.|++.|++|+.+.++-. ......+.+.| +...||+++ ++|..+.++
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 47899999999999999999999999998776532 22235566776 999999997 788777665
No 71
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7e-08 Score=61.52 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=55.1
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhh-hcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE-ELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~-~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
++++|+.+.||||.+++-+|..+|++|+.+.++....+ ...++. ..++..+||++..+|..+.-...+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 48999999999999999999999999999999854321 223444 455999999999998877655444443
No 72
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.70 E-value=7.4e-08 Score=60.36 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=56.4
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCC-cccEEEeCCEEeecHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLH-FVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g-~vP~L~~~g~~l~eS~aI~~yL 94 (183)
+++||+.+.||+|.+++-+|+.+|++|+.+.++.. .....++.+..... .||++..+|..+.....+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 37899999999999999999999999999988742 11123444444544 8999999999999988887764
No 73
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.60 E-value=1.9e-07 Score=59.17 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=59.3
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ....++.+......+|++..+|..+.....+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887431 1234566667788999999999999888888776554
No 74
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.55 E-value=8e-07 Score=57.20 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=61.6
Q ss_pred ceEEeeeCCCchHHHHHHHHHH-----hCCCceEEEecCCCCCCCChhhhhcCC--CCcccEEEeCCEEeecHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFEELNP--LHFVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~yL 94 (183)
.+++|+.+.||+|.+++-+|++ .|++|+.+.++-.. ....++.+... ...||++..+|..+.....|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 4899999999999999999999 89999999887421 11234444333 368999999999999999999999
Q ss_pred HHhCC
Q 030071 95 EEKYP 99 (183)
Q Consensus 95 ~~~~~ 99 (183)
.+.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 98865
No 75
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.52 E-value=2.4e-07 Score=57.75 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=44.9
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~ 82 (183)
++||+.+.||+|++++-+|+++|++|+.+.++-. ....+.+...+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~---~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ---PEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCcccCEEEECCC
Confidence 5899999999999999999999999999988742 11223334457789999997653
No 76
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.49 E-value=6.6e-07 Score=59.37 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCCCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCC-CChhhhhcCCCCcccEEEeCCEEeecHHHHHH
Q 030071 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQ-FSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 18 ~~~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
.+.+++++|+.+.||||.+++-+|...|++|+.+.++...... ....+.+.+...+||.+..+|..+.....+..
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 3456799999999999999999999999999999887432100 01234456788899999999998888777666
No 77
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.47 E-value=1.1e-06 Score=56.74 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=58.5
Q ss_pred eEEeeeCCCchHHHHHHHHHHhC-----CCceEEEecCCCCCCCChhhhhcCCC--CcccEEEeCCEEeecHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKG-----LIYEYKAVDLSKGEQFSPEFEELNPL--HFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~P~--g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
+++|+.+.||+|.+++-+|..++ ++|+.+.++... ....++.+.... ..||++..+|..+..+..|.+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 567777665321 112345444433 689999999999999999999999
Q ss_pred HhCC
Q 030071 96 EKYP 99 (183)
Q Consensus 96 ~~~~ 99 (183)
+++.
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 78
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.44 E-value=2.3e-07 Score=55.71 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=49.3
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l 84 (183)
+++|+.+.||+|.+++-.|+.+|++|+.+.++... ....++.+.....++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998531 1234455666889999999888764
No 79
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.43 E-value=1.4e-06 Score=55.40 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=60.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCC-CCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGE-QFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
++++|+...||+|.+++-+|.+.+++|+.+.++..... .....+.+.+...++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 37899999999999999999999999999998864210 0012344667788999999999999999999887655
No 80
>PHA03050 glutaredoxin; Provisional
Probab=98.38 E-value=1.9e-06 Score=58.05 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=58.7
Q ss_pred CCCceEEeeeCCCchHHHHHHHHHHhCC---CceEEEecCCC-CCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHH
Q 030071 19 SSSKLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 19 ~~~~~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
..+++++|+.++||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..+.....+..
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 3567999999999999999999999999 78888887421 11113456677888899999999999888777665
No 81
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.23 E-value=7.5e-06 Score=54.09 Aligned_cols=74 Identities=22% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCCCceEEeee-----CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHH
Q 030071 18 SSSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 18 ~~~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
.+.+++.+|.. +.||||.+++-+|..+|++|+.+.+.-. .....++.+.+...+||.+..+|..+.....+.+
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 34567999965 7899999999999999999998887521 1112334466778899999999998888777766
Q ss_pred H
Q 030071 93 Y 93 (183)
Q Consensus 93 y 93 (183)
.
T Consensus 87 l 87 (97)
T TIGR00365 87 M 87 (97)
T ss_pred H
Confidence 4
No 82
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.19 E-value=9.6e-06 Score=52.79 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCceEEeee-----CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 19 ~~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
..+++++|.. +.||||.+++-+|...|++|+.+.+... .....++.+.+...++|++..+|..|.....+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 4567899965 5999999999999999999999988632 11123445667788999999999999888887774
Q ss_pred H
Q 030071 94 L 94 (183)
Q Consensus 94 L 94 (183)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 3
No 83
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=3.6e-05 Score=59.19 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=95.3
Q ss_pred CCCCCceEEeeeCCCchHHHHHHHHHHhCCCc--eEEEecCCC---CCCCChh------------------hhhcCC---
Q 030071 17 SSSSSKLVLYSYWQSSCSWRVRFALKLKGLIY--EYKAVDLSK---GEQFSPE------------------FEELNP--- 70 (183)
Q Consensus 17 ~~~~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~--~~~~v~~~~---~~~~~~~------------------~~~~~P--- 70 (183)
..+.+.+.||..-.||++.|..|+-+.||++- ....|.... +-...++ |....|
T Consensus 46 ~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~Ys 125 (324)
T COG0435 46 KAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYS 125 (324)
T ss_pred CCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCC
Confidence 33567899999999999999999999999973 233333211 1011111 111122
Q ss_pred -CCcccEEEeCC---EEeecHHHHHHHHHHhCCC-----CCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhh
Q 030071 71 -LHFVPVLVDGD---VVVSDSYAILLYLEEKYPQ-----RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDK 141 (183)
Q Consensus 71 -~g~vP~L~~~g---~~l~eS~aI~~yL~~~~~~-----~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 141 (183)
.-+||+|-|.. .+=-||..|++-+...|.+ ..|+|. .-|.++..|..|+-..+ +..+++.-.
T Consensus 126 gRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~---~Lr~eId~~n~~Iy~~v----NNGVYk~GF-- 196 (324)
T COG0435 126 GRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE---ALRTEIDELNKWIYDTV----NNGVYKAGF-- 196 (324)
T ss_pred CceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH---HHHHHHHHHHhhhcccc----cCceeeecc--
Confidence 23899998542 4567999999998876552 568998 56888888877765443 222322111
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceee
Q 030071 142 FGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIA 178 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~ 178 (183)
...++.-+..-..+-+.|+.||..|.. +++++-+||.
T Consensus 197 A~tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~R 238 (324)
T COG0435 197 ATTQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIR 238 (324)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhh
Confidence 123344555666677778899998874 3444444443
No 84
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.14 E-value=1.3e-05 Score=51.03 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=57.3
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCC--ceEEEecCCCCCCC-ChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLI--YEYKAVDLSKGEQF-SPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~--~~~~~v~~~~~~~~-~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~ 96 (183)
+++|+.++||+|.+++-+|+..+++ |+.+.++....... ...+.+......+|++..+|..+..+..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 88888875321000 11244556778999999999999999888876554
No 85
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.13 E-value=5.9e-06 Score=56.20 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHHH-HHHHHhh-------cCchHHHHHHHHHHHHHHHHHHhhhcC-----CCc
Q 030071 105 PAADPQQRALNLQAASIISSSMQPLHMLSL-LKYIEDK-------FGPDERLLWVQTHIEKGFLGKFLSLTL-----PRL 171 (183)
Q Consensus 105 p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~ 171 (183)
|. ++.+|+++++|+.|.++.+++.+.... ....... ...+...+....++.+.++.||++|.. ++.
T Consensus 2 ~~-~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 80 (119)
T cd03189 2 PP-DTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDK 80 (119)
T ss_pred CC-CHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCC
Confidence 45 889999999999999999988764322 2211110 122344666778999999999998864 466
Q ss_pred cccceeeecc
Q 030071 172 FERGHIAFMS 181 (183)
Q Consensus 172 ~~~~di~~~~ 181 (183)
+|++||++++
T Consensus 81 ~t~ADi~l~~ 90 (119)
T cd03189 81 LTAADIMMSF 90 (119)
T ss_pred CCHHHHHHHH
Confidence 7777777653
No 86
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.2e-05 Score=57.85 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCCCceEEeeeCCCchHHHHHHHHHHhCCCceE--EEecCCCCCCCChhhh-----------------------------
Q 030071 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEY--KAVDLSKGEQFSPEFE----------------------------- 66 (183)
Q Consensus 18 ~~~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~--~~v~~~~~~~~~~~~~----------------------------- 66 (183)
.+.+.+.||....||++.|+.++++.||++--+ ..+... .+++.-.|.
T Consensus 33 pakgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~-~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY 111 (319)
T KOG2903|consen 33 PAKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWH-LDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELY 111 (319)
T ss_pred CCCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccc-cCCCcccCCCcccCCCchhcccCCCcccccchhHHHHH
Confidence 345789999999999999999999999996322 222210 001110111
Q ss_pred -hcCC----CCcccEEEeC---CEEeecHHHHHHHHH---------HhCCCCCCCCCCCHHHHHHHHHHHHHHHcccchh
Q 030071 67 -ELNP----LHFVPVLVDG---DVVVSDSYAILLYLE---------EKYPQRALLPAADPQQRALNLQAASIISSSMQPL 129 (183)
Q Consensus 67 -~~~P----~g~vP~L~~~---g~~l~eS~aI~~yL~---------~~~~~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~ 129 (183)
...| .-+||+|=|- ..+--||..|++.+. +..+.-.|+|. .-++++..|-.|+-..+-.
T Consensus 112 ~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~---~L~~~Ide~N~wvy~~INN- 187 (319)
T KOG2903|consen 112 YIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS---SLRAQIDETNSWVYDKINN- 187 (319)
T ss_pred hhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH---HHHHHHhhhhceecccccC-
Confidence 1112 2279999754 456789999999999 23333567887 6788999999888665522
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-------CCccccceeee
Q 030071 130 HMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFERGHIAF 179 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~di~~ 179 (183)
.+++.-.. ..++.-+....++-..|+.+|+.|.. |++++-+||.+
T Consensus 188 ---GVYk~GFA--~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirL 239 (319)
T KOG2903|consen 188 ---GVYKCGFA--EKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRL 239 (319)
T ss_pred ---ceeeeccc--cccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheee
Confidence 12222111 12233444555556667777777765 34566666654
No 87
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=97.96 E-value=1.4e-05 Score=54.11 Aligned_cols=74 Identities=9% Similarity=-0.200 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHcccchhHHHHHHHHHH--h----hcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccce
Q 030071 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIE--D----KFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGH 176 (183)
Q Consensus 108 ~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~d 176 (183)
|+.+|+++++|+.|++..+.+.+...+..... . ....++..+....++.+.+..||+.|.. ++.++++|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999998888765543322111 1 1223456778888999999999998853 46788888
Q ss_pred eeecc
Q 030071 177 IAFMS 181 (183)
Q Consensus 177 i~~~~ 181 (183)
|++++
T Consensus 81 i~l~~ 85 (117)
T cd03182 81 ITAFV 85 (117)
T ss_pred HHHHH
Confidence 88764
No 88
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=97.93 E-value=4.1e-05 Score=51.45 Aligned_cols=71 Identities=10% Similarity=-0.138 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
+|+++++|+.|.+..+.+.+..............+..++....++.+.+..+|+.|.. +++++++||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 4789999999999999987654322111112223455677889999999999998863 4678888888653
No 89
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.92 E-value=8.5e-05 Score=46.24 Aligned_cols=55 Identities=29% Similarity=0.359 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHhCCC---ceEEEecCCCCCCCChhhhhcCCCCcccEEEe-CCEEeecHHHHHHHH
Q 030071 30 QSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYL 94 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL 94 (183)
.+|-|..+.+.|+..+.+ ++++..+ .+ .++|.|++|+|.+ +|..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NP---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CC---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 678999999999999999 6666443 22 2689999999998 899999999999998
No 90
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.87 E-value=3.8e-05 Score=51.21 Aligned_cols=71 Identities=11% Similarity=-0.038 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhh--cCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDK--FGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
+|+++++|+.|.++.+.+.+...+....... ...+...+...+++.+.++.||++|.. ++.++++||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 5899999999999999988765433222211 123355667888999999999999864 4668888887753
No 91
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=97.65 E-value=4.5e-05 Score=51.16 Aligned_cols=71 Identities=11% Similarity=-0.038 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHh--hcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIED--KFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
+|+++++|+.|.++.+.+.+.......... ....+...+....++.+.+..||+.|.. |+.+|++||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 589999999999999988764333221110 1112345677888999999999998863 4678888887653
No 92
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.65 E-value=0.00019 Score=59.47 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=53.5
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhh---------hcCCCCcccEEEeCCEEeecHHHHH
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE---------ELNPLHFVPVLVDGDVVVSDSYAIL 91 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~---------~~~P~g~vP~L~~~g~~l~eS~aI~ 91 (183)
.++++|+.+.||+|.+++-+|...||+|+.+.++-. ....++. .......||++..+|..+..-..+.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~---~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD---VKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC---hhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHH
Confidence 469999999999999999999999999999988732 1112222 2246778999998888887776665
Q ss_pred H
Q 030071 92 L 92 (183)
Q Consensus 92 ~ 92 (183)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 93
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.64 E-value=4.5e-05 Score=51.84 Aligned_cols=70 Identities=10% Similarity=-0.156 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 108 ~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
++.+|+++++|+.+.+..+.+.+....+.....+ +..+...+++.+.+..||++|.. |+.++++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~ 77 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPE----ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFP 77 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCc----ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHH
Confidence 7889999999999999999887655443322221 23667888999999999998874 4567777776653
No 94
>PRK10824 glutaredoxin-4; Provisional
Probab=97.62 E-value=0.00034 Score=47.55 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=57.1
Q ss_pred CCCceEEeee-----CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 19 ~~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
+.+.+.+|.. +.||||.++.-+|...|++|+.+.+.-.. .....+.+.+...+||-+..+|..|..+..+...
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~--~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP--DIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH--HHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 3567888875 48999999999999999999988776321 1223455677888999999999999888777664
No 95
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.56 E-value=0.00038 Score=49.40 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=53.6
Q ss_pred eEEeeeC------CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCC----CCcccEEEeCCEEeecHHHHHH
Q 030071 23 LVLYSYW------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNP----LHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 23 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P----~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
++||... .+|+|.+++-+|+.+||+|+.+.|+... ....++.+... ...||.+..+|..|.....+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 6899887 8999999999999999999999887421 12334444433 3789999999999988877776
No 96
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=97.53 E-value=0.00019 Score=48.42 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHH-HHH---hhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLK-YIE---DKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
+|+++.+|+.|....+.+.+...... .+. .....++..+....++.+.++.||++|.. |+.++++||+++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~ 80 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHL 80 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHH
Confidence 58999999999998888876543221 111 11233455667788999999999999864 356777777754
No 97
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.52 E-value=4.2e-05 Score=50.61 Aligned_cols=71 Identities=15% Similarity=0.029 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHH--HHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLK--YIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
+|+++++|+.|.++.+.+.+...... ........++..+....++.+.++.||+.|.. ++.++++||++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHH
Confidence 58999999999988888865432211 11123344566778899999999999998853 4677888887754
No 98
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=97.50 E-value=0.00028 Score=48.07 Aligned_cols=70 Identities=11% Similarity=-0.052 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
+|+++++|+.|.++.+++.+...+..............+....++.+.++.||+.|.. |+.++++||+++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~ 75 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVA 75 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHH
Confidence 4789999999999999987765444333222233455778888999999999998874 355667777654
No 99
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.45 E-value=0.00069 Score=41.10 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=42.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh-----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEee
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ 85 (183)
++++|+.++||+|.++.-+|++. ++++..+.++ ..++..+......+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998876 4666555443 2345555555668999998887654
No 100
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0009 Score=44.63 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=60.2
Q ss_pred CCCCCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCC-ChhhhhcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 17 SSSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQF-SPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 17 ~~~~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~-~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
+.+.+++.+|.-..||+|.+++-+|...|+++..++++....... ...+.++.-..+||.+..+|..+-....+..+
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 456678999999999999999999999999999999986532111 11223445566999999999999888887775
No 101
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.40 E-value=6.7e-05 Score=50.88 Aligned_cols=71 Identities=15% Similarity=0.001 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHhhhcCCCccccceeeecc
Q 030071 110 QQRALNLQAASIISSSMQPLHMLSLLKY-IEDKFGPDERLLWVQTHIEKGFLGKFLSLTLPRLFERGHIAFMS 181 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~di~~~~ 181 (183)
.+|+++++|+.|+++.+++......... +.. ...+...+..++.+.+.+..+|..|..++.|..|+|++|+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G~fSiAD 73 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAG-AKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFGEWCIAD 73 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccCCccHHH
Confidence 5799999999999999988622111011 111 1111234567778888888899888534345555666654
No 102
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=97.39 E-value=0.00066 Score=46.17 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhh-c-CchHHHHHHHHHHHHHHHHHHhhhcC-------CCccccceeeec
Q 030071 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDK-F-GPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFERGHIAFM 180 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~di~~~ 180 (183)
.+|+++++|+.|++..+++.+........... . ..++..+...+.+.+.+..||+.|.. |+.+|++||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 47999999999999999886544333332221 1 12344556677899999999998862 356777777766
Q ss_pred c
Q 030071 181 S 181 (183)
Q Consensus 181 ~ 181 (183)
+
T Consensus 82 ~ 82 (121)
T cd03191 82 P 82 (121)
T ss_pred H
Confidence 3
No 103
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=97.35 E-value=0.00027 Score=48.37 Aligned_cols=65 Identities=17% Similarity=-0.030 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
.+|+++++|+.|.+..+.+.+..... . .++..+....++.+.+..||+.|.. |+.+|++||++++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 71 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA----A---KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGS 71 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc----c---chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHH
Confidence 47999999999999888876544321 1 1344566788899999999998864 4567777776653
No 104
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0097 Score=44.21 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=66.3
Q ss_pred CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCCCCCCCCCCH
Q 030071 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAADP 109 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~~ 109 (183)
...-|..|...|+..++|+.++.-. ..+| ++|-|+||.|..+-..++|=.+|..++..+.- .|-.--+.
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE 101 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSE 101 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhh
Confidence 4456899999999999999877443 4566 78999999999999999999999999999864 23221144
Q ss_pred HHHHHHHHHHHHHHcc
Q 030071 110 QQRALNLQAASIISSS 125 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~ 125 (183)
.+++..+..++.++..
T Consensus 102 ~qkadmra~vslVen~ 117 (257)
T KOG3027|consen 102 DQKADMRAYVSLVENL 117 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888887766643
No 105
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.29 E-value=0.00063 Score=45.23 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
.+|++++.|+.++++.+.+.+.... .. .++..+..+..+.+.+..||+.|.. |+.++++||+++.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~ 71 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIE----KG---RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAP 71 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----hC---cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHH
Confidence 5799999999999998887653322 11 1444667888999999999998864 4556666776653
No 106
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=97.26 E-value=0.00023 Score=46.80 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC--
Q 030071 91 LLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-- 168 (183)
Q Consensus 91 ~~yL~~~~~~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-- 168 (183)
++||++.. .|+|. +..+++++..|+++....+. . . ...++.+.+..+|++|..
T Consensus 1 ~r~~~~~~---~~~~~-~~~~~~~vd~~~d~~~~~l~-----------~---~-------~~~~~~~~l~~le~~L~~~~ 55 (96)
T cd03200 1 ARFLYRLL---GPAPN-APNAATNIDSWVDTAIFQLA-----------E---G-------SSKEKAAVLRALNSALGRSP 55 (96)
T ss_pred CchHHHHh---cccCC-CchHHHHHHHHHHHHHHHHh-----------c---C-------CHHHHHHHHHHHHHHHcCCC
Confidence 47888883 39999 99999999999996543221 0 1 122233445556655543
Q ss_pred ---CCccccceeeecc
Q 030071 169 ---PRLFERGHIAFMS 181 (183)
Q Consensus 169 ---~~~~~~~di~~~~ 181 (183)
++.++++||++++
T Consensus 56 fl~Gd~~tiADi~l~~ 71 (96)
T cd03200 56 WLVGSEFTVADIVSWC 71 (96)
T ss_pred ccCCCCCCHHHHHHHH
Confidence 5778888887764
No 107
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.21 E-value=0.0011 Score=44.66 Aligned_cols=75 Identities=15% Similarity=-0.082 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcCCCccccceeeeccc
Q 030071 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTLPRLFERGHIAFMSN 182 (183)
Q Consensus 108 ~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~di~~~~~ 182 (183)
|..+||++++..+|+.+.|.++...+-..............+..+..+.+.+...+..|..++.+..|+|++|+.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGewsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGEWSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS--HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCccccchHHHH
Confidence 467899999999999999999877766555433323233345566666777778888888888888899988763
No 108
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.02 E-value=0.0012 Score=46.07 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=31.5
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
|++||+.+.|++|++++-.|+..||+|+.+.+.-
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 3899999999999999999999999999998863
No 109
>PTZ00062 glutaredoxin; Provisional
Probab=97.00 E-value=0.0035 Score=46.97 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=55.5
Q ss_pred CCCceEEeee-----CCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHH
Q 030071 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 19 ~~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
..+++.||.- +.||||.++.-+|...|++|+...+.-. +.....+.+.+....||.+..+|..|.....+.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 3567888865 5899999999999999999998877632 1112344466777899999999999888777766
No 110
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.00 E-value=0.0013 Score=44.71 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
|+++|+.+.|+.|++++-.|++.|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 3899999999999999999999999999998853
No 111
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.97 E-value=0.0011 Score=44.71 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.8
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
++||+.+.||+|++++-.|++.|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998864
No 112
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.93 E-value=0.00087 Score=43.95 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=46.8
Q ss_pred HHHHHHHHcccchhHHHHHHHHHH-hhcCchHHHHHHHHHHHHHHHHHHhhhcCC--Cccccceeeecc
Q 030071 116 LQAASIISSSMQPLHMLSLLKYIE-DKFGPDERLLWVQTHIEKGFLGKFLSLTLP--RLFERGHIAFMS 181 (183)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~~--~~~~~~di~~~~ 181 (183)
++|..+.++.+...+...+...+. .....++..+....++.+.+..+|++|..+ +.+|++||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~d~~TlADi~l~~ 70 (98)
T cd03205 2 LRLEALADGILDAAVAIVYERRLRPEEKRSQPWLERQRGKIERALDALEAELAKLPLDPLDLADIAVAC 70 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCcHhhhChHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Confidence 567777777666666554442322 233445678889999999999999999753 679999988765
No 113
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=96.89 E-value=0.0014 Score=44.92 Aligned_cols=70 Identities=7% Similarity=-0.096 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHH-----HHhhcCchHHHHHHHHHHHHHHHHHHhhh-cC-----CCccccceeeec
Q 030071 112 RALNLQAASIISSSMQPLHMLSLLKY-----IEDKFGPDERLLWVQTHIEKGFLGKFLSL-TL-----PRLFERGHIAFM 180 (183)
Q Consensus 112 ra~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~le~~l-~~-----~~~~~~~di~~~ 180 (183)
|+++++|+.|....+.+.+....... .......++..+...+++.+.+..+|+.+ .. ++.+|++||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 67899999999988877544322111 11122345667778889999999999874 31 466777777655
Q ss_pred c
Q 030071 181 S 181 (183)
Q Consensus 181 ~ 181 (183)
+
T Consensus 82 ~ 82 (126)
T cd03183 82 C 82 (126)
T ss_pred H
Confidence 3
No 114
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.89 E-value=0.0017 Score=43.31 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=30.7
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
++||+.+.||+|++++-.|+++|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 589999999999999999999999999998863
No 115
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=96.85 E-value=0.0027 Score=44.69 Aligned_cols=65 Identities=9% Similarity=-0.139 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
..|+++++|++|....+.+.+. .... ...++..+....++.+.+..||+.|.. ++.+|++||+++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVY----KAGF--ATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHH----HHhh--ccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 5688999999999988876532 1212 234556777888999999999998864 456777777655
No 116
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0052 Score=37.98 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=48.1
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCC--------CCCChhhh--hcCCCCcccEEE-eCCEEee
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG--------EQFSPEFE--ELNPLHFVPVLV-DGDVVVS 85 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~--------~~~~~~~~--~~~P~g~vP~L~-~~g~~l~ 85 (183)
++.+||+...||-|....-.|+-.+++|+.+.+.-... -+..++|- +.|.+--+|+|. +||.++.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 45699999999999999999999999999998853210 02234444 345666799998 7777655
No 117
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.029 Score=44.21 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE-eCCEEeecHHHHHHHHHHhCCCCCCCCCCC
Q 030071 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~ 108 (183)
.++-|..+.+.++..+-+.+++..+ .++ ..|.|++|+|+ ++|..++.-.-|..+|.....+..+-+...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ss-------N~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSS-------NPW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeec-------CCC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 5678999999999999766655443 122 46899999999 778999999999999999543333433313
Q ss_pred HHHHHHHHHHHHHHHcccchhHH
Q 030071 109 PQQRALNLQAASIISSSMQPLHM 131 (183)
Q Consensus 109 ~~~ra~~~~~~~~~~~~l~~~~~ 131 (183)
..+++....|.++++..+.+++.
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~ 108 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALL 108 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999988877653
No 118
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=96.75 E-value=0.0034 Score=42.48 Aligned_cols=67 Identities=10% Similarity=-0.102 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
+|+++++|+.|..+.+.+.+...+....... +...+....++.+.+..||+.|.. |+.+|++|++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~ 73 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG---AEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLV 73 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHH
Confidence 5899999999999888877655443332221 123456677889999999998863 345666677654
No 119
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.73 E-value=0.0029 Score=44.04 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.1
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLS 56 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~ 56 (183)
|+++|+.+.|+.|++++-.|++.|++|+.+.+.-.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 48999999999999999999999999999988643
No 120
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.62 E-value=0.014 Score=38.08 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=50.0
Q ss_pred eEEeeeCCCc------hHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcC----CCCcccEEEeCCEEeecHHHHHH
Q 030071 23 LVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN----PLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 23 ~~Ly~~~~s~------~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~----P~g~vP~L~~~g~~l~eS~aI~~ 92 (183)
++||....++ .+++++.+|.-+||+|+.+.|+... ....++.+.. +...+|-+..+|..+...-.+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6778765554 6788999999999999999998532 2234555543 34789999999999888755544
No 121
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.61 E-value=0.0037 Score=43.61 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=31.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
|+++|+.+.|+.|++++-.|+..||+|+.+.+.-
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 4899999999999999999999999999998864
No 122
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.46 E-value=0.0048 Score=42.01 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=30.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEec
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 54 (183)
++||+.+.||+|++++-.|++.|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999998875
No 123
>PRK10026 arsenate reductase; Provisional
Probab=96.44 E-value=0.0058 Score=43.04 Aligned_cols=35 Identities=11% Similarity=-0.053 Sum_probs=32.2
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
.++++|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 56999999999999999999999999999988754
No 124
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.16 E-value=0.0091 Score=39.92 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=30.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
+++|+.+.|+-|++++-.|++.|++|+.+.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999999999999998764
No 125
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.05 E-value=0.011 Score=40.07 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=30.8
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
++||+.+.|+-|++++-.|++.|++|+.+.+.-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhc
Confidence 789999999999999999999999999998764
No 126
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.014 Score=39.85 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=31.3
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
+++||+.+.|.-|++++-.|++.||+|+.+.+.-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~ 35 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLK 35 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeec
Confidence 5899999999999999999999999999887753
No 127
>PRK10853 putative reductase; Provisional
Probab=95.90 E-value=0.014 Score=39.93 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=31.0
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
|+++|+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k 34 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRV 34 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehcc
Confidence 3899999999999999999999999999987753
No 128
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=95.80 E-value=0.008 Score=38.71 Aligned_cols=66 Identities=12% Similarity=-0.004 Sum_probs=44.3
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
++|+.|++..+.+.+..............++..+...+.+.+.++.||+.|.. ++.++++|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~ 72 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAP 72 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHH
Confidence 67889998888776554433221111223556778888999999999999864 4567777776653
No 129
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.67 E-value=0.021 Score=39.47 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=31.4
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
.++||+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 5899999999999999999999999999998753
No 130
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.62 E-value=0.1 Score=32.48 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=40.6
Q ss_pred eEEeeeCCCchHHHH----HHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEee
Q 030071 23 LVLYSYWQSSCSWRV----RFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ 85 (183)
+.+|. ++||.|..+ .-++++.|++++.+.++- .++ ....-...+|+++-+|..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHH-HHHcCCCcCCEEEECCEEEE
Confidence 77886 999999988 667788899988888861 222 22345678999998886553
No 131
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.59 E-value=0.082 Score=33.39 Aligned_cols=55 Identities=24% Similarity=0.211 Sum_probs=39.8
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhC--CCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKG--LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGD 81 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~g--i~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g 81 (183)
+++||+-+.|+.|..+.-+|+... .+++...|+.. ..+++.+..- -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID----EDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC----CCHHHHHHhc-CCCCEEEEcC
Confidence 479999999999999999999654 45677777764 3444444443 3899999666
No 132
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.46 E-value=0.099 Score=32.51 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=40.2
Q ss_pred ceEEeeeCCCchHHHHHHHHHH----hCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~ 82 (183)
++++|+.++|++|..+.-.|+. .+..++...++.. ..++..+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM----ENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc----cCHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888764 3544666666642 2344445566778999997764
No 133
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.41 E-value=0.078 Score=34.23 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=42.2
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh-----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEee
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ 85 (183)
.+++|..++|++|..+.-++++. ++.++.+.++ ..++..+......+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 58999999999999988777765 4555555554 2455556666778999998776554
No 134
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=95.40 E-value=0.03 Score=38.23 Aligned_cols=61 Identities=7% Similarity=-0.124 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-------CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~di~~~ 180 (183)
+||+.+.|+.+++..+.+.+ . .+.. ++..+...+.+.+.+..+|+.|.. |+.++++|++++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~-~----~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~ 69 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFY-K----LLGA----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIW 69 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHH-H----HHhc----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhh
Confidence 58999999999984443322 2 2221 223456777888888888888763 355666666554
No 135
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=95.20 E-value=0.025 Score=36.99 Aligned_cols=61 Identities=7% Similarity=-0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeee
Q 030071 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAF 179 (183)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~ 179 (183)
.+|+.|..+.+.+............ .....+....++.+.+..+|++|.. ++.++++|+++
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~ 67 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG---APLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAV 67 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHH
Confidence 5789999998876543333222221 1224566788999999999998875 45566666654
No 136
>PHA02125 thioredoxin-like protein
Probab=95.17 E-value=0.11 Score=32.22 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=39.6
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~ 82 (183)
|+.+|+.++|+.|+++.-.|+. +.++...|+. ....+..+..-...+|+++ +|.
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~----~~~~~l~~~~~v~~~PT~~-~g~ 54 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDT----DEGVELTAKHHIRSLPTLV-NTS 54 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeC----CCCHHHHHHcCCceeCeEE-CCE
Confidence 3788999999999998888764 5666666663 2345666666778999998 443
No 137
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=94.96 E-value=0.0053 Score=40.35 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=40.7
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeecc
Q 030071 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFMS 181 (183)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~~ 181 (183)
++|+.|.++.+++.+...... ..++..+....++.+.++.||++|.. ++.++++||++++
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~ 66 (103)
T cd03207 2 LRWLFFYAGVVEPALIAKAMG------IEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGS 66 (103)
T ss_pred eeeeeeccccccHHHHHHHcC------CCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHH
Confidence 467777878888765443211 12334566778899999999998875 3667777877654
No 138
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.77 E-value=0.053 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.035 Sum_probs=30.2
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~ 55 (183)
++||+.+.|+-|++++-.|++.|++|+.+.+.-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLK 33 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccC
Confidence 589999999999999999999999999887754
No 139
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.68 E-value=0.058 Score=36.40 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=29.7
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEec
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 54 (183)
++||+.+.|.-|++++-.|++.|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988765
No 140
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.23 E-value=0.17 Score=28.64 Aligned_cols=52 Identities=25% Similarity=0.126 Sum_probs=35.1
Q ss_pred EEeeeCCCchHHHHHHHHH-----HhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 24 VLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.+|+...|+.|.+.+..+. ..++.+..+.++.. .........++...+|+++
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED---PALEKELKRYGVGGVPTLV 58 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC---hHHhhHHHhCCCccccEEE
Confidence 5677789999999999999 45565555555422 1111222467889999998
No 141
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.36 Score=31.76 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCceEEee-----eCCCchHHHHHHHHHHhC-CCceEEEecCCCCCCCChhhh----hcCCCCcccEEEeCCEEeecHHH
Q 030071 20 SSKLVLYS-----YWQSSCSWRVRFALKLKG-LIYEYKAVDLSKGEQFSPEFE----ELNPLHFVPVLVDGDVVVSDSYA 89 (183)
Q Consensus 20 ~~~~~Ly~-----~~~s~~~~~v~~~L~~~g-i~~~~~~v~~~~~~~~~~~~~----~~~P~g~vP~L~~~g~~l~eS~a 89 (183)
.+.+.||= +|.|+|+.++-=+|.+.| ++|..+.|- ..++.+ +.+-+-++|-|-.+|..+-.|--
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL------~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DI 87 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVL------QDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDI 87 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeec------cCHHHHhccHhhcCCCCCceeeECCEEeccHHH
Confidence 44566764 678999999999999999 566666553 234444 44567789999999999988877
Q ss_pred HHHHH
Q 030071 90 ILLYL 94 (183)
Q Consensus 90 I~~yL 94 (183)
|.+-.
T Consensus 88 v~Em~ 92 (105)
T COG0278 88 VREMY 92 (105)
T ss_pred HHHHH
Confidence 76643
No 142
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=93.61 E-value=0.19 Score=34.12 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHH
Q 030071 108 DPQQRALNLQAASI 121 (183)
Q Consensus 108 ~~~~ra~~~~~~~~ 121 (183)
|+.+|+.+.+|+.|
T Consensus 1 d~~~ra~~~~~~~~ 14 (120)
T cd03203 1 DPAKREFADELLAY 14 (120)
T ss_pred CHHHHHHHHHHHHH
Confidence 46789999999999
No 143
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.52 E-value=0.32 Score=30.16 Aligned_cols=57 Identities=19% Similarity=0.062 Sum_probs=37.6
Q ss_pred eEEeeeCCCchHHHHHH----HHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecH
Q 030071 23 LVLYSYWQSSCSWRVRF----ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS 87 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~----~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS 87 (183)
++++ .+.||+|.++.- ++...|+.++.+.+. ..++. .......+|+|+.||...+..
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 6775 467999996655 455567777666542 23344 566788999999888765543
No 144
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=90.72 E-value=0.32 Score=32.68 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHH---hCCCceEEEecCCCCCCCChhhhh-cC-CCCcccEEE-eCCE-------------EeecHHHH
Q 030071 30 QSSCSWRVRFALKL---KGLIYEYKAVDLSKGEQFSPEFEE-LN-PLHFVPVLV-DGDV-------------VVSDSYAI 90 (183)
Q Consensus 30 ~s~~~~~v~~~L~~---~gi~~~~~~v~~~~~~~~~~~~~~-~~-P~g~vP~L~-~~g~-------------~l~eS~aI 90 (183)
.||.|..+.=+|.. ..-..+++.|++... .....+ +. .+...|+|+ .+|. .|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 46666666555553 333466677776321 123333 23 367899999 5443 79999999
Q ss_pred HHHHHHhCC
Q 030071 91 LLYLEEKYP 99 (183)
Q Consensus 91 ~~yL~~~~~ 99 (183)
++||.++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999998
No 145
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=90.52 E-value=0.41 Score=31.19 Aligned_cols=68 Identities=7% Similarity=-0.069 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-------CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~di~~~ 180 (183)
+++++..|++..+.-... +...++... +....++........+.+.+..||+.|.. ++.++++||+++
T Consensus 2 e~~~v~~~~~~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~ 76 (104)
T cd03192 2 EAARVDALVDTIADLRAE-FAKYFYEKD-GEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVF 76 (104)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhhcCc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHH
Confidence 578888888876443322 222121100 01123566778888999999999998853 245666666554
No 146
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.30 E-value=0.61 Score=30.78 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=40.6
Q ss_pred eEEeeeCCCc------hHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcC---------CCCcccEEEeCCEEeecH
Q 030071 23 LVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN---------PLHFVPVLVDGDVVVSDS 87 (183)
Q Consensus 23 ~~Ly~~~~s~------~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------P~g~vP~L~~~g~~l~eS 87 (183)
+++|....++ ..+++..+|+.++|+|+.+.+... +....++++.. +..-.|-|..+|..+.+=
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 7888766554 567999999999999999988752 22233444333 233446788888777665
Q ss_pred HHHHH
Q 030071 88 YAILL 92 (183)
Q Consensus 88 ~aI~~ 92 (183)
-.+-+
T Consensus 81 e~f~e 85 (99)
T PF04908_consen 81 EDFEE 85 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 147
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=89.66 E-value=0.3 Score=32.94 Aligned_cols=39 Identities=15% Similarity=-0.024 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhcC---------------CCccccceeeecc
Q 030071 143 GPDERLLWVQTHIEKGFLGKFLSLTL---------------PRLFERGHIAFMS 181 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~le~~l~~---------------~~~~~~~di~~~~ 181 (183)
.+.+.++....++.+.+..||++|.. ++.||++||++++
T Consensus 22 ~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~ 75 (111)
T cd03204 22 DNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGV 75 (111)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHH
Confidence 44566788999999999999998852 3467777777654
No 148
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=89.20 E-value=0.57 Score=31.94 Aligned_cols=64 Identities=6% Similarity=-0.167 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC--------CCccccceeeec
Q 030071 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL--------PRLFERGHIAFM 180 (183)
Q Consensus 110 ~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--------~~~~~~~di~~~ 180 (183)
.++++++.....+.... ..+.. .... ..++..+...+.+.+.+..||+.|.. |+.+|++||+++
T Consensus 2 ~e~~~vd~~~~~~~d~~-~~~~~----~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~ 73 (126)
T cd03210 2 KEAALIDMVNDGVEDLR-LKYVR----MIYQ--NYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLF 73 (126)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHH----HhcC--cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHH
Confidence 35677777766654322 21111 1111 12334556677789999999998863 344555566544
No 149
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=88.59 E-value=0.25 Score=33.21 Aligned_cols=18 Identities=22% Similarity=-0.204 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 030071 149 LWVQTHIEKGFLGKFLSL 166 (183)
Q Consensus 149 ~~~~~~~~~~l~~le~~l 166 (183)
+...+.+.+.+..+|..+
T Consensus 40 ~~~~~~~~~~~~~le~~l 57 (114)
T cd03194 40 EAVQADIARIEAIWAECL 57 (114)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 150
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.38 E-value=0.63 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=22.8
Q ss_pred eeeCCCchHHHHHHHHHHhCCCceEEEec
Q 030071 26 YSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 26 y~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 54 (183)
|+.+.|.-|++++-.|++.|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999988665
No 151
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=88.01 E-value=0.97 Score=27.00 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 146 ERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 146 ~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
..++..++++.+.++.||++|.. |+.++++|++++
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~ 41 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALA 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHH
Confidence 34677888999999999998875 455666666554
No 152
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=87.53 E-value=1.8 Score=29.17 Aligned_cols=64 Identities=5% Similarity=-0.257 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
+++++++.++.+....... ....... ..+...+.....+.+.+..||+.|.. |+.+|++|+.++
T Consensus 2 e~~~id~~~~~~~d~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~ 70 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGL-----ARICYSP-DFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLY 70 (121)
T ss_pred chHHHHHHHHHHHHHHHHH-----HHhhcCc-chHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHH
Confidence 4677777777665433221 1111111 22355667788899999999998864 355666666543
No 153
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=87.50 E-value=0.36 Score=32.96 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=14.2
Q ss_pred cccEEE--eCCEEeecHHHHHHHHHHhCCC
Q 030071 73 FVPVLV--DGDVVVSDSYAILLYLEEKYPQ 100 (183)
Q Consensus 73 ~vP~L~--~~g~~l~eS~aI~~yL~~~~~~ 100 (183)
.-|-|. -+|..|+|+.||++|+..-|.+
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 448885 5689999999999999998863
No 154
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.69 E-value=2.7 Score=36.37 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=42.5
Q ss_pred ceEEeeeCCCchHHHHHHH----HHHh-CCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEee
Q 030071 22 KLVLYSYWQSSCSWRVRFA----LKLK-GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~----L~~~-gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ 85 (183)
.+++|..+.||+|-.+.-+ +.+. +|..+.+.+. ..++..+......||+++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~------~~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS------HFPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc------ccHHHHHhCCceecCEEEECCEEEE
Confidence 4889889999999876543 3444 6888877775 2456666667889999998876544
No 155
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=85.49 E-value=1.6 Score=30.34 Aligned_cols=66 Identities=17% Similarity=-0.005 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCc-hHHHHHHHHHHHHHHHHHHhhhc--C-----CCccccceeeec
Q 030071 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGP-DERLLWVQTHIEKGFLGKFLSLT--L-----PRLFERGHIAFM 180 (183)
Q Consensus 111 ~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~l~--~-----~~~~~~~di~~~ 180 (183)
+++.++..++.+...+...... .+...... +.........+.+.+..||+.|. . ++.+|++|+.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~ 76 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILML----PFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLL 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHH
Confidence 5677777777665433222111 11111111 12234555677899999999887 3 455666666544
No 156
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=85.38 E-value=1.5 Score=27.82 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 144 PDERLLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
.++.++.....+.+.+..+|+.|.. |+.+|++|++++
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~ 63 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALF 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHH
Confidence 3456788899999999999999884 345566666544
No 157
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=84.52 E-value=7 Score=23.81 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=36.4
Q ss_pred ceEEeeeCCCchHHHHHHHHHH-----hCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
.+.+|+.+.|+.|+...-.++. .++.+-.+.++ ....+.+......+|+++ .+|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD------ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC------CChhHHHhcCcccccEEEEEECCE
Confidence 4667777899999988777776 45444433332 244555555677899987 5665
No 158
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=82.76 E-value=8.1 Score=24.73 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=37.0
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
.+.+|..++|+.|+...-.++.. +-.+....++. ...+++....-...+|++. .+|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~----d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDI----DEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEEC----CCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 36677778999999887666541 11244455553 2345565555567899987 667554
No 159
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.48 E-value=3.2 Score=35.59 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=48.1
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCC---ceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecH----HHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS----YAILLYL 94 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS----~aI~~yL 94 (183)
.+++|..+.||||-.+.-+++..-+. .+...++ ....+++.+..-...||.+..+|..+.+. ..+++.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id----~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID----GALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE----chhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 48999999999999877666554332 3333333 23467777777788999999777665552 3455566
Q ss_pred HHh
Q 030071 95 EEK 97 (183)
Q Consensus 95 ~~~ 97 (183)
.+.
T Consensus 195 ~~~ 197 (517)
T PRK15317 195 DTG 197 (517)
T ss_pred hcc
Confidence 543
No 160
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=82.42 E-value=5.5 Score=26.59 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=34.6
Q ss_pred eEEe-eeCCCchHHHHHHHHHHhCCC---ceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 23 LVLY-SYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 23 ~~Ly-~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
+.++ +.++|++|+.++-++++..-. .+...++. ...++.........+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~----d~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDF----DEDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeC----CcCHHHHHHcCCCcCCEEE
Confidence 5555 457999999887777755432 23444543 2356676777788999998
No 161
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.41 E-value=3.3 Score=35.49 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=42.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCC---ceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeec
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSD 86 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~e 86 (183)
.+++|..+.||||-.+.-+++...+. .+...++ ....+++.+..-...||.+..+|..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id----~~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID----GALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE----chhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 48899999999999887776655443 2223333 2345677777777899999977766655
No 162
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=80.84 E-value=3 Score=26.19 Aligned_cols=31 Identities=6% Similarity=-0.232 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 150 WVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 150 ~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
...+++.+.++.+|+.|.. ++.++++||+++
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~ 54 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVF 54 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHH
Confidence 6677888888999988774 455666676654
No 163
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=80.25 E-value=16 Score=24.85 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=35.0
Q ss_pred eEEeeeCCCchHHHHHHHHHH----hCCCceEEEecCCCC-CCCC----hhhhhcC----CCCcccEEE--eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKG-EQFS----PEFEELN----PLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~-~~~~----~~~~~~~----P~g~vP~L~--~~g~~l 84 (183)
+..|+.++||+|+...=.|+. .++++-.+.++.... +... .+|.+.. ....+|+++ .+|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 677888999999986555543 345544444442210 1111 2444433 344599998 677543
No 164
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.99 E-value=10 Score=25.35 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=40.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCC---CceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEeec
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSD 86 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l~e 86 (183)
+..|+.++|+-|+...-.+++..- ......|+. .+.++..+......+|+++ .+|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~----~~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNA----EKAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEc----ccCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 556667899989987766654321 135566664 2455666667788999998 78876653
No 165
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=78.65 E-value=3.8 Score=27.79 Aligned_cols=32 Identities=3% Similarity=-0.128 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhcC------CCccccceeeecc
Q 030071 150 WVQTHIEKGFLGKFLSLTL------PRLFERGHIAFMS 181 (183)
Q Consensus 150 ~~~~~~~~~l~~le~~l~~------~~~~~~~di~~~~ 181 (183)
...+.+.+.+..||..|.. |+.|+++|+++++
T Consensus 30 ~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~ 67 (121)
T cd03201 30 GTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAP 67 (121)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHH
Confidence 3455677777788887753 4567777777654
No 166
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=77.77 E-value=15 Score=23.20 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=45.8
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe------ecHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV------SDSYA 89 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l------~eS~a 89 (183)
.+..|+.++|+.|+...=.++.. +-++....++. ....++.+..-...+|++. .+|..+ .+...
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~----~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 95 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDC----DENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAES 95 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEET----TTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhh----hccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHH
Confidence 36677788999999877444322 22566666664 2456666667788999998 777543 23445
Q ss_pred HHHHHHH
Q 030071 90 ILLYLEE 96 (183)
Q Consensus 90 I~~yL~~ 96 (183)
|.++|.+
T Consensus 96 l~~~i~~ 102 (103)
T PF00085_consen 96 LIEFIEK 102 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555544
No 167
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=77.17 E-value=0.54 Score=30.48 Aligned_cols=63 Identities=14% Similarity=-0.060 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC-------CCccccceeee
Q 030071 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL-------PRLFERGHIAF 179 (183)
Q Consensus 108 ~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~di~~ 179 (183)
++..++.+.+|++|.. . ...............+...+.+.+.+..+|+.|.. |+.+|++|+++
T Consensus 2 ~~~~~a~i~~W~~f~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v 71 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV--A-------FRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAV 71 (99)
T ss_dssp --TTHHHHHHHHH-GH--C-------CHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHH
T ss_pred chHHHHHHHHHHhccc--h-------hhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHH
Confidence 3456788888988541 0 00000000111233566777888888888887754 34456666544
No 168
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=76.96 E-value=2.1 Score=29.88 Aligned_cols=24 Identities=8% Similarity=-0.242 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcC
Q 030071 145 DERLLWVQTHIEKGFLGKFLSLTL 168 (183)
Q Consensus 145 ~~~~~~~~~~~~~~l~~le~~l~~ 168 (183)
++..+..++++...|..||+.|..
T Consensus 24 ~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 24 PALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcc
Confidence 344567778888889999998874
No 169
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=76.52 E-value=7.6 Score=26.32 Aligned_cols=33 Identities=3% Similarity=-0.214 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-----CCccccceeeec
Q 030071 148 LLWVQTHIEKGFLGKFLSLTL-----PRLFERGHIAFM 180 (183)
Q Consensus 148 ~~~~~~~~~~~l~~le~~l~~-----~~~~~~~di~~~ 180 (183)
.+...+++++.+..+|+.|.. |+.++++||+++
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~ 93 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVF 93 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHH
Confidence 456778899999999998864 567777777764
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=75.34 E-value=7.9 Score=25.03 Aligned_cols=56 Identities=11% Similarity=-0.080 Sum_probs=32.9
Q ss_pred ceEEeeeCCCchHHHHHHHH--------HHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRVRFAL--------KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.+..|+.++|+.|++..-.+ ...+ .+....++.........++.+......+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 35667788999999875332 1222 45555565431111134555556677899987
No 171
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=7.2 Score=29.63 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=52.3
Q ss_pred CceEEee-----eCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHH
Q 030071 21 SKLVLYS-----YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 21 ~~~~Ly~-----~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y 93 (183)
..++||- .|.|+|++.+.-+|...|++|+...|--. +.-....++.+-+-+.|-|-.+|..+.....|.+-
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEM 214 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHH
Confidence 3467774 57889999999999999999998877532 11122334567788999999999888777666553
No 172
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.30 E-value=25 Score=26.27 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=35.5
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCC---CceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.+++|+.++|++|..+.-+++..-- ......++. ...++..+......+|+++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~----~~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEA----NENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeC----CCCHHHHHHhCCccCCEEE
Confidence 4677888999999988877775432 123333443 2355666666677899998
No 173
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.01 E-value=31 Score=23.68 Aligned_cols=66 Identities=17% Similarity=-0.043 Sum_probs=39.6
Q ss_pred CCCchHHHHH----HHHHHhCCCceEEEecCCCCCCCChhhhhcCCC-------CcccEEE-eC--CEEeecHHHHHHHH
Q 030071 29 WQSSCSWRVR----FALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-------HFVPVLV-DG--DVVVSDSYAILLYL 94 (183)
Q Consensus 29 ~~s~~~~~v~----~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~-------g~vP~L~-~~--g~~l~eS~aI~~yL 94 (183)
++||.|.++. =+|++.+-+...+.|..- +++-|--..||+ --||+|. -+ +..+.+...-...|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG---~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVG---NRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEec---CCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 4889998764 455566666666666542 222222223333 3589988 33 46677777777776
Q ss_pred HHh
Q 030071 95 EEK 97 (183)
Q Consensus 95 ~~~ 97 (183)
.+.
T Consensus 120 ve~ 122 (128)
T KOG3425|consen 120 VEM 122 (128)
T ss_pred HHH
Confidence 664
No 174
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=67.16 E-value=6.9 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.3
Q ss_pred ccEEE-eCCEEeecHHHHHHHHHHhCC
Q 030071 74 VPVLV-DGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 74 vP~L~-~~g~~l~eS~aI~~yL~~~~~ 99 (183)
+|.+. .+|.+++.|..|+++++.++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46666 899999999999999998865
No 175
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=65.54 E-value=31 Score=21.62 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=36.4
Q ss_pred eEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
+..|+.++|+.|++..-.|+.. ...+....++. ...+++.+......+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~----~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA----EELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc----ccCHHHHHhcCCccccEEEEEECCEEE
Confidence 5566678999999887666542 33455566653 2344555444466799987 677543
No 176
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=65.22 E-value=45 Score=23.39 Aligned_cols=79 Identities=14% Similarity=-0.085 Sum_probs=49.6
Q ss_pred CCCCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcc-cE---EEeCCEEeecHHHHHHH
Q 030071 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFV-PV---LVDGDVVVSDSYAILLY 93 (183)
Q Consensus 18 ~~~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~v-P~---L~~~g~~l~eS~aI~~y 93 (183)
|..+++++++.-.|+.|-.---.|..+.-.-.++..+.+. +.....++..+...- +. ++.+|..+.+|.|+.+-
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~--e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS--EPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC--chhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 3444566666789998887666667666665555555532 223344444443321 22 23789999999999998
Q ss_pred HHHhC
Q 030071 94 LEEKY 98 (183)
Q Consensus 94 L~~~~ 98 (183)
+...-
T Consensus 83 ~~~L~ 87 (137)
T COG3011 83 LRLLP 87 (137)
T ss_pred HHHCC
Confidence 77764
No 177
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=64.42 E-value=38 Score=22.27 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=34.4
Q ss_pred ceEEeeeCCCchHHHHHHHHH-----HhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEE
Q 030071 22 KLVLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~ 83 (183)
-+..|+.++|+.|+...-.++ ..+.......|+.. ..+..........+|++. .+|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 455666788998876543332 22333444555532 234555556678999987 67754
No 178
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=63.95 E-value=22 Score=22.01 Aligned_cols=53 Identities=30% Similarity=0.359 Sum_probs=37.1
Q ss_pred ceEEeeeCCCchHHHH-----HHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRV-----RFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v-----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.++||....+|.++++ +++=++.+-+|+...++.. +.|+..+..-.--.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~----~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVL----KQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcc----cCHhHHhhCCEEEechhh
Confidence 3688987777888765 3444456889999999974 456666655566778876
No 179
>PTZ00051 thioredoxin; Provisional
Probab=62.90 E-value=36 Score=21.41 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=34.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHh---CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK---GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~ 83 (183)
+..|+.++|+.|+...-.++.. ........++. .....+.+......+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~----~~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDV----DELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEEC----cchHHHHHHCCCceeeEEEEEeCCeE
Confidence 4566678999888776555442 22234445553 2344556666678899987 56654
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=61.52 E-value=41 Score=25.12 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=37.5
Q ss_pred ceEEeee---CCCchHHHHHHHHHHhCCCc---eEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEE
Q 030071 22 KLVLYSY---WQSSCSWRVRFALKLKGLIY---EYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 22 ~~~Ly~~---~~s~~~~~v~~~L~~~gi~~---~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~ 83 (183)
.+.+|.. ++|+.|....=++++..-.| +...++.. ....++..+..-...+|++. .+|..
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd--~~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFD--TPEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecC--CcccHHHHHHcCCCccCEEEEEeCCee
Confidence 4778877 78999998877776653222 22233332 12345666666678999988 56543
No 181
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=56.64 E-value=38 Score=22.28 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=41.8
Q ss_pred eeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCC-hhhhhc---CCCCcccEEEeCCE-EeecHHHHHHHHHHh
Q 030071 26 YSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFS-PEFEEL---NPLHFVPVLVDGDV-VVSDSYAILLYLEEK 97 (183)
Q Consensus 26 y~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~-~~~~~~---~P~g~vP~L~~~g~-~l~eS~aI~~yL~~~ 97 (183)
|+...||+|.+..-.+...+..-.+..++........ .....+ +....+-+ ..+|. ....+.|+.+-+...
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4578999999988888877764455555542211110 111111 22334444 55665 999999998865543
No 182
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=56.31 E-value=24 Score=25.40 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=26.5
Q ss_pred ceEEeeeCCCchHHHH----HHHHHHh-CCCceEEEecCC
Q 030071 22 KLVLYSYWQSSCSWRV----RFALKLK-GLIYEYKAVDLS 56 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v----~~~L~~~-gi~~~~~~v~~~ 56 (183)
++++|....||||... +-+++.. ++.++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4789999999999854 4444555 888888888764
No 183
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=55.89 E-value=58 Score=21.79 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=31.3
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCC-cccEEE--e-CCEEe
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLH-FVPVLV--D-GDVVV 84 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g-~vP~L~--~-~g~~l 84 (183)
.+..|+..+|+.|++..-.+... ...-..+.++.... ..+.-...+..| .+|+++ + +|..+
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~--~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD--EEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC--CCchhhhcccCCCccceEEEECCCCCCc
Confidence 35556678999998775544441 12223344443221 111112345554 499987 3 66553
No 184
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=55.62 E-value=36 Score=20.72 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred cccEEEeCCEEeecHHHHHHHHHHhCCCCC----------CCCCCCHHHHHHHHHHHH
Q 030071 73 FVPVLVDGDVVVSDSYAILLYLEEKYPQRA----------LLPAADPQQRALNLQAAS 120 (183)
Q Consensus 73 ~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~----------L~p~~~~~~ra~~~~~~~ 120 (183)
+=||+..+| ..+|-.+|.+||.......+ |.| +..-|..+..|+.
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p--n~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNGGTDPFTRQPLSESDLIP--NRALKSAIEEWCA 69 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE---HHHHHHHHHHHH
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE--CHHHHHHHHHHHH
Confidence 459998888 89999999999999443211 222 3455666666654
No 185
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=52.82 E-value=31 Score=21.84 Aligned_cols=59 Identities=12% Similarity=-0.002 Sum_probs=32.2
Q ss_pred ceEEeeeCCCchHHHHHHHH----HHhC--CCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFAL----KLKG--LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L----~~~g--i~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
.+.+|+.++|+.|+...=.+ +... -.+....++.. ....+.+.+......+|+++ .+|.
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT--KPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC--CCccHHHHHhCCCccccEEEEEeCCC
Confidence 45666678899998774222 2221 22333334432 12245555555566899987 5554
No 186
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=51.58 E-value=27 Score=25.05 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHhCCCceEEEecCCCCCCCChhhh
Q 030071 32 SCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE 66 (183)
Q Consensus 32 ~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~ 66 (183)
+...++.-+|++.||+|+...++- +++|+..
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSA----HRTPe~m 46 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSA----HRTPEKM 46 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEec----cCCHHHH
Confidence 456788889999999999999983 7777754
No 187
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=50.27 E-value=30 Score=24.36 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhh-cC-C--CCcccEEEeCCEEee---cHHHHHH
Q 030071 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEE-LN-P--LHFVPVLVDGDVVVS---DSYAILL 92 (183)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~-~~-P--~g~vP~L~~~g~~l~---eS~aI~~ 92 (183)
.-.+.+|.++.|++|..=.=.++.+|+....+..+-. ...++ +. | .+..-+.+.+|..+- --.+|.+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ 98 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIAR 98 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHH
Confidence 3458999999999998888888888887776655421 12221 11 2 234556667776543 3578999
Q ss_pred HHHHhC
Q 030071 93 YLEEKY 98 (183)
Q Consensus 93 yL~~~~ 98 (183)
.|+++.
T Consensus 99 ll~~~p 104 (149)
T COG3019 99 LLAEKP 104 (149)
T ss_pred HHhCCC
Confidence 998876
No 188
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=49.90 E-value=34 Score=25.40 Aligned_cols=35 Identities=23% Similarity=0.068 Sum_probs=25.6
Q ss_pred CceEEeeeCCCchHHHH----HHHHHHhCCCceEEEecC
Q 030071 21 SKLVLYSYWQSSCSWRV----RFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v----~~~L~~~gi~~~~~~v~~ 55 (183)
+.+.+|+...||||.-. +-++...+++.+.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 35889999999998854 444456677777777765
No 189
>PHA03075 glutaredoxin-like protein; Provisional
Probab=48.77 E-value=34 Score=23.28 Aligned_cols=66 Identities=20% Similarity=0.079 Sum_probs=47.2
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEe-CCEEeecHHHHHHHHHHh
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 97 (183)
.++.|+|-|.|+-|+.+.-+|.+..=+|++..|+... |. .-.|+|=+|.. .+..+. ..+.+|+...
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS-------fF--sK~g~v~~lg~d~~y~lI--nn~~~~lgne 69 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNILS-------FF--SKDGQVKVLGMDKGYTLI--NNFFKHLGNE 69 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee-------ee--ccCCceEEEecccceehH--HHHHHhhccc
Confidence 3589999999999999999999999999999998642 21 12567777763 443332 4566666643
No 190
>PRK09381 trxA thioredoxin; Provisional
Probab=48.55 E-value=72 Score=20.53 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=35.1
Q ss_pred ceEEeeeCCCchHHHHHHHHHH----hCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
.+..|+.++||.|+...-.++. .+-.+....++.. ..+...+......+|+++ .+|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID----QNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC----CChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 3455556789988877544432 2223555666642 334444445677899987 677644
No 191
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.40 E-value=79 Score=24.06 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=42.8
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhh-cCCCCcccEEEeCCEEe
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEE-LNPLHFVPVLVDGDVVV 84 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~-~~P~g~vP~L~~~g~~l 84 (183)
++++|.+..|--|....=.|+.||+--....++- .-+.|.. .|-.-.||.+..||..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a-----~~p~f~~~~~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDA-----ELPPFLAFEKGVISVPSVFIDGELV 70 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEc-----CCChHHHhhcceeecceEEEcCeEE
Confidence 4899999999888888999999999766666652 2344443 34566899998777554
No 192
>PRK10996 thioredoxin 2; Provisional
Probab=44.86 E-value=1e+02 Score=21.23 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=36.1
Q ss_pred eEEeeeCCCchHHHHHHHHHH----hCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
+..|+.++|+.|+...-.+.. .+-.+....++. ...+++.+..-...+|+++ .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~----~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNT----EAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeC----CCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 556667889988876444433 232355555554 2345666556677899987 677654
No 193
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=44.17 E-value=82 Score=19.94 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=33.6
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCC----ceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
-+..|+.++|+.|+...-.++...-. +....|+.. ..+...+..-...+|++. .+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG----DDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC----ccHHHHHHcCCCccCEEEEEcCCC
Confidence 35566678999888765554433222 344455542 234555555567899986 5664
No 194
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=43.69 E-value=46 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHhCCCceEEEecCCCCCCCChh
Q 030071 32 SCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPE 64 (183)
Q Consensus 32 ~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~ 64 (183)
+.++++..+|+..||+|+...... ++.++
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~Sa----HRtp~ 40 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVSA----HRTPE 40 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECc----ccCHH
Confidence 688999999999999999998875 55544
No 195
>PHA02278 thioredoxin-like protein
Probab=43.36 E-value=93 Score=20.34 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=34.8
Q ss_pred eEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
+.-|+.++|+-|+...=.++.. +.......++........++..+..-...+|+++ .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4555578998888666444432 2223344444421101124555556677899998 778654
No 196
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.82 E-value=31 Score=20.37 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=20.1
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEec
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~ 54 (183)
.+||......-+..++-+|+..||++......
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 36787767778899999999999999876443
No 197
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=41.20 E-value=38 Score=21.83 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=33.2
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh----C-CCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK----G-LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~----g-i~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
.+..|+.++|+.|+...-.++.. + -......++.. .++..+..-...+|++. .+|..+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 35566678999888775555432 1 11334444431 33445555577889877 677543
No 198
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=40.62 E-value=44 Score=23.82 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHhCCCceEEEecCCCCCCCChh
Q 030071 32 SCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPE 64 (183)
Q Consensus 32 ~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~ 64 (183)
+.+++++-.|++.|++|+...... ++.++
T Consensus 14 ~~~~~a~~~L~~~gi~~~~~V~sa----HR~p~ 42 (150)
T PF00731_consen 14 PIAEEAAKTLEEFGIPYEVRVASA----HRTPE 42 (150)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--T----TTSHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEec----cCCHH
Confidence 789999999999999999887764 56544
No 199
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=40.48 E-value=41 Score=26.00 Aligned_cols=22 Identities=0% Similarity=-0.111 Sum_probs=18.2
Q ss_pred ceEEeeeCCCchHHHHHHHHHH
Q 030071 22 KLVLYSYWQSSCSWRVRFALKL 43 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~ 43 (183)
.+.+|..+.||||++.+-.+..
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4778889999999999877653
No 200
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.44 E-value=34 Score=21.35 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.3
Q ss_pred CCchHHHHHHHHHHhCCCceEEEec
Q 030071 30 QSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~v~ 54 (183)
.-+|++|+.-+|+..|++|+..+-.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 4479999999999999999987543
No 201
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=39.91 E-value=1.2e+02 Score=20.51 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=36.5
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCC----ceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
+.-|+..+|+-|+...=.+++.--. .....|+. +..++..+..-...+|+++ -+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDv----D~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDI----DEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEEC----CCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4446678999888776555443222 23455554 2456666666677899988 777654
No 202
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=39.85 E-value=50 Score=21.68 Aligned_cols=64 Identities=6% Similarity=0.012 Sum_probs=37.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCC---ceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEeecHHHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSDSYAIL 91 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l~eS~aI~ 91 (183)
+..|+.++|+-|+...-.++...-. .....|+.. +. +..+..-...+|+++ .+|..+..-....
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~----~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE----KA-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch----hh-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 4556678998888776555533222 234455532 12 444445567899988 7887655443333
No 203
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=39.61 E-value=38 Score=23.09 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=29.4
Q ss_pred eCCCchHHHHHHHHH----HhCCCceEEEecCCC-CCCCCh--hhhh--cCCCCcccEEE--eCCEEeecHHHH
Q 030071 28 YWQSSCSWRVRFALK----LKGLIYEYKAVDLSK-GEQFSP--EFEE--LNPLHFVPVLV--DGDVVVSDSYAI 90 (183)
Q Consensus 28 ~~~s~~~~~v~~~L~----~~gi~~~~~~v~~~~-~~~~~~--~~~~--~~P~g~vP~L~--~~g~~l~eS~aI 90 (183)
..+||.|+++.-+++ ...-....+.|..-. .+++.+ .|+. .--...||+|+ .++..|.|....
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~ 108 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECL 108 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhc
Confidence 358899998864444 322234444444311 111221 3332 12345699998 556677776543
No 204
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=39.53 E-value=99 Score=19.59 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=33.2
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCC----CceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGL----IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGD 81 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi----~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g 81 (183)
.+..|+.++|+.|++..=.++...- ......++. ...+++.+......+|++. .+|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDC----QKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEC----CchHHHHHHcCCCcccEEEEEcCC
Confidence 4566667899999876544443322 244445553 2344555555677899987 454
No 205
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=39.23 E-value=1.1e+02 Score=20.19 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=30.0
Q ss_pred ceEEeeeCCCchHHHHHHHH-------HHhCCCceEEEecCCCCC---------CCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRVRFAL-------KLKGLIYEYKAVDLSKGE---------QFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L-------~~~gi~~~~~~v~~~~~~---------~~~~~~~~~~P~g~vP~L~ 78 (183)
.+..|+.++|++|++..-.+ +..+=.+..+.++..... ....++....-...+|+++
T Consensus 17 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 46667788999999865322 111113445555543110 0113444444456789976
No 206
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=39.19 E-value=60 Score=23.11 Aligned_cols=35 Identities=6% Similarity=-0.059 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhcCCCccccceeeec
Q 030071 146 ERLLWVQTHIEKGFLGKFL--SLTLPRLFERGHIAFM 180 (183)
Q Consensus 146 ~~~~~~~~~~~~~l~~le~--~l~~~~~~~~~di~~~ 180 (183)
+..+.+.+.+.++.+.+.. ....|+.+++|||++.
T Consensus 79 D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvy 115 (149)
T cd03197 79 DVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVY 115 (149)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHH
Confidence 3456666677777666543 2444788999999874
No 207
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=38.67 E-value=90 Score=20.06 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=36.8
Q ss_pred ceEEeeeCCCchHHHHH-----HHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRVR-----FALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~-----~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.++||....+|.++++. ++=++++=.|+...++.. +.|+..+....--.|+|+
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~----~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVL----KNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcc----cCHhHHhHCCEEEecHHh
Confidence 37899888888888663 222344445999999974 456666666666778876
No 208
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=38.07 E-value=1e+02 Score=19.29 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcccchh
Q 030071 90 ILLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPL 129 (183)
Q Consensus 90 I~~yL~~~~~~~~L~p~~~~~~ra~~~~~~~~~~~~l~~~ 129 (183)
|-+||..... .....-.+..+++|+...+.|.
T Consensus 18 i~dYL~~E~~--------~evg~~~Ae~fleFis~elGpy 49 (82)
T COG5460 18 IRDYLTRETE--------TEVGKFDAEFFLEFISGELGPY 49 (82)
T ss_pred HHHHHHHHHH--------HHHHHhhHHHHHHHHHhhhhHH
Confidence 5566666533 2344556777888888888774
No 209
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=37.74 E-value=1.5e+02 Score=21.05 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=34.1
Q ss_pred eEEeeeCCCchHHHHHHHHHHh-----CCCceEEEecCCCCCCCChhhhhcCCC------CcccEEE--eCCEEee
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPL------HFVPVLV--DGDVVVS 85 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~------g~vP~L~--~~g~~l~ 85 (183)
+..|+.++|+.|+...-.++.. +-.++...|+.. +.++..+..-. +++|+++ .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd----~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG----RFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC----CCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 5566678899888765444433 223555666642 23444432222 3489987 7887655
No 210
>PRK09301 circadian clock protein KaiB; Provisional
Probab=37.11 E-value=94 Score=20.67 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=37.5
Q ss_pred ceEEeeeCCCchHHHHH-----HHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRVR-----FALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~-----~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.++||....+|.++++. ++=++++=.|+...++.. +.|+..+..-.--.|+|+
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~----~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVL----KNPQLAEEDKILATPTLA 65 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcc----cCHhHHhHCCeEEecHHh
Confidence 47899888888888763 233345556999999974 456666666667788876
No 211
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=36.24 E-value=69 Score=23.45 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=20.1
Q ss_pred CCceEEeeeCCCchHHHHHHHHHH
Q 030071 20 SSKLVLYSYWQSSCSWRVRFALKL 43 (183)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~v~~~L~~ 43 (183)
...+.+|..+.||||++..-.+..
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 346888889999999999988875
No 212
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=36.10 E-value=95 Score=19.78 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=33.6
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
.+..|+.++|+.|+...-.++.. +-......++... ....++.+......+|++. .+|.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--DKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--cccHHHHHHcCCCcCCEEEEEeCCC
Confidence 46667778999998764444333 2123444444321 1234555555677899987 5553
No 213
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=35.57 E-value=1.1e+02 Score=18.97 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=35.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHhC----CCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKG----LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~g----i~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~ 83 (183)
+..|+.++|+.|+...-.++... -.+....++. ...+++.+......+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~----~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNC----DAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEec----cCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 45555678888887766555432 1244455554 2345666656677899998 77754
No 214
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.36 E-value=40 Score=27.73 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=56.3
Q ss_pred cEEEeCCEEeecHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHHHHHHcccchh-----HHHHHHHHHHhhcCchHHH
Q 030071 75 PVLVDGDVVVSDSYAILLYLEEKYPQRALL-PAADPQQRALNLQAASIISSSMQPL-----HMLSLLKYIEDKFGPDERL 148 (183)
Q Consensus 75 P~L~~~g~~l~eS~aI~~yL~~~~~~~~L~-p~~~~~~ra~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~ 148 (183)
+-+.+.++.+.|+.+|+.-|...-. .|+ |- +..+|.++..|+.-+...-.+. |...+...+.. ...
T Consensus 99 ~~~~~~dQ~~VEaa~la~aL~~a~~--~lW~~L-~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~-~G~---- 170 (361)
T PF10022_consen 99 GFIGDYDQRLVEAASLALALLRAPE--WLWDPL-DEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKK-VGE---- 170 (361)
T ss_pred CCcccchhhHhHHHHHHHHHHHCHH--HHHhhC-CHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHH-cCC----
Confidence 3344557999999999998887532 243 44 7889999999988666443331 11112212221 111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccce
Q 030071 149 LWVQTHIEKGFLGKFLSLTLPRLFERGH 176 (183)
Q Consensus 149 ~~~~~~~~~~l~~le~~l~~~~~~~~~d 176 (183)
+.-..+++..++.+|+-..+.+.+..|.
T Consensus 171 ~~d~~~i~~~l~~~e~~Y~GdGWY~DG~ 198 (361)
T PF10022_consen 171 EYDEERIDYDLERIEEWYLGDGWYSDGP 198 (361)
T ss_pred CCcHHHHHHHHHHHHHHhccCCccccCC
Confidence 1122666777777777666677776664
No 215
>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).
Probab=35.24 E-value=1.7e+02 Score=24.50 Aligned_cols=63 Identities=8% Similarity=-0.108 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhhcC--CCccccc
Q 030071 112 RALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLGKFLSLTL--PRLFERG 175 (183)
Q Consensus 112 ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~~~~~ 175 (183)
...+..+++|-...+.+...- +.+.+......+.+++.....++..+..|.+.|.. ..+||.-
T Consensus 289 ~~~l~AIIDwQ~vh~G~~~eD-l~Rll~~~lS~edRR~~~~~lL~~Yy~~f~~~l~~~~~~PfT~e 353 (414)
T PF07914_consen 289 KLKLKAIIDWQCVHRGSPAED-LARLLVSCLSGEDRREHTEELLEYYYDTFTEALEDGGKAPFTLE 353 (414)
T ss_pred hHHHHHHHHHHHhhcCchHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHH
Confidence 457788888887777665444 33444455667778888888888888888888832 3445543
No 216
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=35.15 E-value=1.2e+02 Score=23.06 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=19.3
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK 44 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~ 44 (183)
.+.+|..+.||||+|..--+...
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 47889999999999998777654
No 217
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=34.13 E-value=1.5e+02 Score=20.14 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=35.7
Q ss_pred eEEeeeCCCchHHHHHH-------HHHHhCCCceEEEecCCCCCCCChhhh----h----cCCCCcccEEE---eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRF-------ALKLKGLIYEYKAVDLSKGEQFSPEFE----E----LNPLHFVPVLV---DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~-------~L~~~gi~~~~~~v~~~~~~~~~~~~~----~----~~P~g~vP~L~---~~g~~l 84 (183)
+..++..+|++|++..- +.....-.|..+.++... .++.. + .+-.+-+|+++ .+|..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~----~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE----RPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc----CcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 34456778999887632 222233357777777532 22221 1 23456789987 568888
Q ss_pred ecH
Q 030071 85 SDS 87 (183)
Q Consensus 85 ~eS 87 (183)
..+
T Consensus 95 ~~~ 97 (124)
T cd02955 95 FGG 97 (124)
T ss_pred eee
Confidence 776
No 218
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=32.86 E-value=45 Score=24.65 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.4
Q ss_pred CCEEeecHHHHHHHHHHhCC
Q 030071 80 GDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 80 ~g~~l~eS~aI~~yL~~~~~ 99 (183)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45789999999999999998
No 219
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=32.22 E-value=50 Score=22.86 Aligned_cols=33 Identities=3% Similarity=-0.323 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC-----Cccccceeee
Q 030071 147 RLLWVQTHIEKGFLGKFLSLTLP-----RLFERGHIAF 179 (183)
Q Consensus 147 ~~~~~~~~~~~~l~~le~~l~~~-----~~~~~~di~~ 179 (183)
..+...++..+.+..||+.|..+ +.++..|+.+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~ 98 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALV 98 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHH
Confidence 35566677788888899888753 3344445444
No 220
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=31.90 E-value=63 Score=20.78 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=31.1
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCC---ceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCC
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGD 81 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g 81 (183)
+..|+.++|+.|++..=.+++..-. .....++-. ...+...+..-...+|++. ++|
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEEEEcCC
Confidence 5556678899998776555433221 223334321 1234444444567899887 555
No 221
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=31.54 E-value=87 Score=21.05 Aligned_cols=61 Identities=11% Similarity=-0.066 Sum_probs=39.2
Q ss_pred ceEEeeeC--CCchHHHHHHHHHHhCCCce----EEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEeec
Q 030071 22 KLVLYSYW--QSSCSWRVRFALKLKGLIYE----YKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSD 86 (183)
Q Consensus 22 ~~~Ly~~~--~s~~~~~v~~~L~~~gi~~~----~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l~e 86 (183)
.+.+|+.. .||-|+.+.=+|++.--.|. ...++. ...++..+..-...+|+|+ .+|..+..
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdi----d~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGR----ADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEEC----CCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 35566555 39999988877765544432 334443 2345666667778899998 78876544
No 222
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=31.02 E-value=89 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=22.1
Q ss_pred eEEeeeCCCchHHHHH----HHHHHhCCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVR----FALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~----~~L~~~gi~~~~~~v~~ 55 (183)
+.+|....||||.... -+..+.+++++.+.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 4688899999998653 33345566666666643
No 223
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=30.79 E-value=1e+02 Score=22.20 Aligned_cols=46 Identities=17% Similarity=0.025 Sum_probs=26.0
Q ss_pred ceEEee-eCCCchHH-------HHHHHHHHhCCCceEEEecCCCCCCCChhhhh
Q 030071 22 KLVLYS-YWQSSCSW-------RVRFALKLKGLIYEYKAVDLSKGEQFSPEFEE 67 (183)
Q Consensus 22 ~~~Ly~-~~~s~~~~-------~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~ 67 (183)
.+.||. ..+||-|+ +.--.+...+-++|++.|+....+..-.+|..
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 356664 33666454 23334556677899999987543322334443
No 224
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=29.91 E-value=1.7e+02 Score=19.30 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhhcCchH
Q 030071 104 LPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDE 146 (183)
Q Consensus 104 ~p~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 146 (183)
+|. ++..-..+..|+.|+-......-......++..-..-.+
T Consensus 11 iP~-~~~s~~~~~eWLefLve~~G~~~~~~~L~YY~~igWISe 52 (99)
T PF04659_consen 11 IPE-DYVSEIVVFEWLEFLVERVGHNNAADALDYYESIGWISE 52 (99)
T ss_pred CCc-chHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCcCH
Confidence 677 888888999999999887766554445555554444433
No 225
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=29.68 E-value=72 Score=19.37 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=17.5
Q ss_pred eEEeeeCCCchHHHHHHHHHHh
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK 44 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~ 44 (183)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3577889999999887777664
No 226
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=29.26 E-value=1.1e+02 Score=22.85 Aligned_cols=56 Identities=14% Similarity=-0.019 Sum_probs=27.0
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
+-||-.....--.++|.-....|||-+.|.-....-.+....++.+.-.|++|+++
T Consensus 137 ~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~g~lP~~l 192 (200)
T TIGR03759 137 LDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQGQLPAVV 192 (200)
T ss_pred eeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCCCCCCEEE
Confidence 44443222234455555566666664433211111113344555555467888887
No 227
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=29.14 E-value=81 Score=21.75 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=19.6
Q ss_pred ccccCCCCCceEEeeeCCCchHHHHHHHHH
Q 030071 13 IGINSSSSSKLVLYSYWQSSCSWRVRFALK 42 (183)
Q Consensus 13 ~~~~~~~~~~~~Ly~~~~s~~~~~v~~~L~ 42 (183)
.|. .-+...+++|....||+|.+..-.+.
T Consensus 7 ~G~-~~a~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 7 IGN-PDAPITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp ES--TTTSEEEEEEE-TTSHHHHHHHHHHH
T ss_pred ecC-CCCCeEEEEEECCCCHhHHHHHHHHh
Confidence 455 33445699999999999998765553
No 228
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.10 E-value=74 Score=23.05 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=21.3
Q ss_pred eEEeeeCCCchHHHHHHHH----HHh----CCCceEEEecC
Q 030071 23 LVLYSYWQSSCSWRVRFAL----KLK----GLIYEYKAVDL 55 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L----~~~----gi~~~~~~v~~ 55 (183)
+++|....||||.-..-.| +.. ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4688899999999554333 444 45556555544
No 229
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=86 Score=24.75 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=49.2
Q ss_pred CceEEeeeCCC------chHHHHHHHHHHhCCCceEEEecCCCCCCCChhhhhcC----CCCcccEEEeCCEEeecHHHH
Q 030071 21 SKLVLYSYWQS------SCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN----PLHFVPVLVDGDVVVSDSYAI 90 (183)
Q Consensus 21 ~~~~Ly~~~~s------~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~----P~g~vP~L~~~g~~l~eS~aI 90 (183)
..+.+|..... -.|..||.+|+-.++-|+.+.|++... ...++..+- -.-.+|.+..+|..|-.---|
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV 208 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV 208 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence 36888864332 267899999999999999999997531 233433322 245789777999888877766
Q ss_pred HH
Q 030071 91 LL 92 (183)
Q Consensus 91 ~~ 92 (183)
.+
T Consensus 209 ~~ 210 (281)
T KOG2824|consen 209 VR 210 (281)
T ss_pred hh
Confidence 65
No 230
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=29.02 E-value=62 Score=19.27 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=15.3
Q ss_pred eEEeeeC----CCchHHHHHHHHHH
Q 030071 23 LVLYSYW----QSSCSWRVRFALKL 43 (183)
Q Consensus 23 ~~Ly~~~----~s~~~~~v~~~L~~ 43 (183)
++||.+- -+.||.|+-.+|++
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 5677644 45699999988875
No 231
>PRK09266 hypothetical protein; Provisional
Probab=28.96 E-value=59 Score=25.13 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=39.4
Q ss_pred HHHHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEEeCCEEeecHHHHHHHHHHhCCC
Q 030071 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ 100 (183)
Q Consensus 40 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 100 (183)
.++..|++.+...+....-....+-|.--+-.|-+||-..++..+..+..|.+.|.+.|..
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 3456689988887775321112233444456799999998887776556777777776643
No 232
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.96 E-value=1.4e+02 Score=21.66 Aligned_cols=62 Identities=10% Similarity=-0.026 Sum_probs=34.9
Q ss_pred eEEeeeCCCchHHHHHHHHHHh---CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEeecHHH
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK---GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSDSYA 89 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l~eS~a 89 (183)
+..|+.++|+.|+.+.-.|+.. --....+.|+.. .. +.....+...+|+|+ -+|..+..-..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d----~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG 153 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS----AT-GASDEFDTDALPALLVYKGGELIGNFVR 153 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc----ch-hhHHhCCCCCCCEEEEEECCEEEEEEec
Confidence 3445567888887554333222 113445555532 12 444556778999987 68876654333
No 233
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=28.88 E-value=1.2e+02 Score=19.59 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=31.9
Q ss_pred CceEEeeeCCCchHHHHHHHHHHh-----CCCceEEEecCCCCCCCChhhh-hcCCCCcccEEE
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFE-ELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~-~~~P~g~vP~L~ 78 (183)
+.+..|+.++|+.|++..-.++.. +..+....++.. .....+. +......+|++.
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d---~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD---GEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC---ccchhhHHhhcCCCcCCEEE
Confidence 346777789999999775544432 333445555532 1122332 235677899986
No 234
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=28.55 E-value=1.5e+02 Score=18.23 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=32.7
Q ss_pred eEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
+..|+.++|+.|+...-.++.. +-......++.. ..+++.+..-...+|+++ .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4555567888888775555432 223555555532 344555444566899987 5664
No 235
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.19 E-value=41 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=18.4
Q ss_pred ceEEeeeCCCchHH----HHHHHHHHhCCCc
Q 030071 22 KLVLYSYWQSSCSW----RVRFALKLKGLIY 48 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~----~v~~~L~~~gi~~ 48 (183)
.+.+|+...||+|. |..-++.+.+-.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 48899999999998 4444444555333
No 236
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=27.09 E-value=1.7e+02 Score=18.37 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=33.5
Q ss_pred ceEEeeeCCCchHHHHHHHHHHh-----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
.+..|+.++|+.|+...=.++.. +..+....++.. ..+...+......+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----QEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----CCHhHHHHcCCcccCEEEEeCCCC
Confidence 35566678999998765444432 333444455532 334555555677899987 4553
No 237
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=26.72 E-value=79 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCceEEeeeCCCchHHHHHHHHHHhCCCc
Q 030071 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIY 48 (183)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~ 48 (183)
...+.+|......++-|++|+|+..|.+-
T Consensus 90 d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~ 118 (285)
T COG2897 90 DDTVVVYDDGGGFFAARAWWLLRYLGHEN 118 (285)
T ss_pred CCEEEEECCCCCeehHHHHHHHHHcCCCc
Confidence 45799998888899999999999999875
No 238
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=26.53 E-value=2.1e+02 Score=19.36 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHH----HHhCCCceEEEecCCCCC---CCChhhhhcCCCC-cccEEE--eCCEEeecH
Q 030071 29 WQSSCSWRVRFAL----KLKGLIYEYKAVDLSKGE---QFSPEFEELNPLH-FVPVLV--DGDVVVSDS 87 (183)
Q Consensus 29 ~~s~~~~~v~~~L----~~~gi~~~~~~v~~~~~~---~~~~~~~~~~P~g-~vP~L~--~~g~~l~eS 87 (183)
.+||-|+...-.+ ++..-.+..+.|+..... ....++....-.. .+|+++ .+|..|.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 6899888665444 333323455666542211 1123444322233 799998 555555544
No 239
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=26.37 E-value=96 Score=20.99 Aligned_cols=32 Identities=9% Similarity=-0.144 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC-----Cccccceeee
Q 030071 148 LLWVQTHIEKGFLGKFLSLTLP-----RLFERGHIAF 179 (183)
Q Consensus 148 ~~~~~~~~~~~l~~le~~l~~~-----~~~~~~di~~ 179 (183)
.+.......+.+..|+..|..+ +.+|.+|.++
T Consensus 55 ~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~v 91 (126)
T cd03211 55 LDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALV 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHH
Confidence 4566677778888888888753 3344445443
No 240
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.00 E-value=62 Score=28.26 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=32.6
Q ss_pred eCCEEeecHHHHHHHHHHhCCC-CCCCCCCCHHHHHHHHHHHHHHHc
Q 030071 79 DGDVVVSDSYAILLYLEEKYPQ-RALLPAADPQQRALNLQAASIISS 124 (183)
Q Consensus 79 ~~g~~l~eS~aI~~yL~~~~~~-~~L~p~~~~~~ra~~~~~~~~~~~ 124 (183)
.+|..+..+..+..|.+..... +.|++. + .++.++..|+.+..+
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~-~-~d~~~vd~w~~~s~~ 87 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGN-N-IDRSQVDHWVSFSST 87 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCC-c-ccHHHHHHHHHHhhh
Confidence 4566777777777777654443 448888 6 899999999998865
No 241
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=25.94 E-value=88 Score=20.10 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=20.7
Q ss_pred ceEEeeeCCCchHHHHHHHHHH---hCC----CceEEEecCC
Q 030071 22 KLVLYSYWQSSCSWRVRFALKL---KGL----IYEYKAVDLS 56 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~---~gi----~~~~~~v~~~ 56 (183)
.+.+|+.+.||+|++..-.+.. ... .+..+.++..
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 4667778999999988666552 111 3555666553
No 242
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=25.65 E-value=1.6e+02 Score=17.79 Aligned_cols=54 Identities=9% Similarity=-0.119 Sum_probs=34.4
Q ss_pred CceEEeeeCCCchHHHHHHHHHHh------CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLK------GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
..+.+|+.++|+.|+...-.++.. +-.+....++. .+...+.+......+|++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDC----TANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeec----cchHHHHHhCCCCCCCEEE
Confidence 456777778899999876666542 23355555553 2345555555567899986
No 243
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=24.88 E-value=1.7e+02 Score=18.77 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=32.4
Q ss_pred eEEeeeCCCchHHHHHHHHHHhC---CCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKG---LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l 84 (183)
+..|+.++|+-|+...=.++... -......++.... ....++.+......+|+++ .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 44555678888876654444321 1234455553210 0112555555667799987 567543
No 244
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=24.29 E-value=2e+02 Score=18.36 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=33.3
Q ss_pred eEEeeeCCCchHHHHHHHHHHhC------C----CceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKG------L----IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~g------i----~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~ 82 (183)
+..|+.++|+.|+...-.+++.- . ......++- ...++..+..-...+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~----d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC----DKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC----CCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 55666789999997765554321 1 133334443 2334555556677899987 5664
No 245
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=23.52 E-value=44 Score=22.98 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=27.4
Q ss_pred ceEEeeeCCCchHHHH----HHHHHHh-CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 22 KLVLYSYWQSSCSWRV----RFALKLK-GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v----~~~L~~~-gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
.+.++.-.+||-|.+. .-++++. +|+.+....+-. ......|+. +-..+||+++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~--~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN--KELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH--HHHTTTTTT--SS--SSEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC--hhHHHHHHh-CCCeecCEEE
Confidence 4677778899988854 3334444 666666655421 111234444 6677999998
No 246
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=23.12 E-value=4.3e+02 Score=21.76 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=44.5
Q ss_pred ceEEeeeCCCchHHHHHHHHH-----H--hCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEE-------ee
Q 030071 22 KLVLYSYWQSSCSWRVRFALK-----L--KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV-------VS 85 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~-----~--~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~-------l~ 85 (183)
.+.+|+.++|+.|.+..=.+. . .+-.+....|+- ....+..+......+|++. .+|.. -.
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~ 96 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA----TEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPR 96 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC----CCcHHHHHhCCCccccEEEEEeCCccceeEecCCC
Confidence 356677789999987643222 2 232245555553 2334555555666789886 55543 13
Q ss_pred cHHHHHHHHHHhCC
Q 030071 86 DSYAILLYLEEKYP 99 (183)
Q Consensus 86 eS~aI~~yL~~~~~ 99 (183)
....|..|+.+..+
T Consensus 97 ~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 97 DADGIVKYMKKQSG 110 (462)
T ss_pred CHHHHHHHHHHhcC
Confidence 56788899888765
No 247
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=23.03 E-value=2.6e+02 Score=19.25 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=33.2
Q ss_pred eEEeeeCCCchHHHHHHHHHHh----CCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--e-CCEEe
Q 030071 23 LVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--D-GDVVV 84 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~-~g~~l 84 (183)
+..|+..+|+.|+...=.+... +-.+.++.++... .....+.+..-...+|+++ + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--PKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--cccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 4455567899888765555432 2234455555431 1223444445566799887 3 56554
No 248
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.82 E-value=1.5e+02 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=21.9
Q ss_pred ceEEeeeCCCchHHHHHHH----HHHh--CCCceEEEecC
Q 030071 22 KLVLYSYWQSSCSWRVRFA----LKLK--GLIYEYKAVDL 55 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~----L~~~--gi~~~~~~v~~ 55 (183)
.+.+|..+.||+|....-. .++. +++++.+...+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L 41 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGL 41 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccc
Confidence 3788999999999855433 3343 56666554443
No 249
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=21.95 E-value=2.5e+02 Score=18.63 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=33.2
Q ss_pred ceEEeeeCCCchHHHHHHHHHHhCCC----ceEEEecCCCCCCCChhhh-hcCCCCcccEEE--eCCE
Q 030071 22 KLVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFE-ELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~-~~~P~g~vP~L~--~~g~ 82 (183)
.+..|+.++|+.|+...-.+++..-. .....|+- +...... +..-...+|+|. .+|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~----d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINC----WWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEEC----CCChHHHHHhcCCcccCEEEEEECCc
Confidence 35666678999999887666655432 33344443 2233343 233456789987 5553
No 250
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=21.66 E-value=59 Score=20.57 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=31.7
Q ss_pred EEeeeCCCchHHHHHHHHH-----HhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 24 VLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 24 ~Ly~~~~s~~~~~v~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
+||....++.++++.-.++ +.+-+|+...++.. +.|+.....-.--.|+|+
T Consensus 1 rLyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~----~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 1 RLYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVL----EQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETT----TSHSHHTTTEEECHHHHH
T ss_pred CeEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcc----cCHhHHhHCCeeecceEe
Confidence 4676666677776644433 46889999999974 345554444344556654
No 251
>PTZ00102 disulphide isomerase; Provisional
Probab=21.60 E-value=4.8e+02 Score=21.77 Aligned_cols=74 Identities=15% Similarity=0.021 Sum_probs=44.4
Q ss_pred ceEEeeeCCCchHHHHHHHH-------HHhCCCceEEEecCCCCCCCChhhhhcCCCCcccEEE--eCCEEe-----ecH
Q 030071 22 KLVLYSYWQSSCSWRVRFAL-------KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV-----SDS 87 (183)
Q Consensus 22 ~~~Ly~~~~s~~~~~v~~~L-------~~~gi~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~--~~g~~l-----~eS 87 (183)
.+..|+.++|+.|++..=.+ ...+-++....|+.. ...+..+......+|++. .+|..+ ...
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~ 127 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT----EEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTA 127 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC----CCHHHHHhcCCCcccEEEEEECCceEEecCCCCH
Confidence 46677788999998664222 222334555555532 234454444566799986 555322 356
Q ss_pred HHHHHHHHHhCC
Q 030071 88 YAILLYLEEKYP 99 (183)
Q Consensus 88 ~aI~~yL~~~~~ 99 (183)
..|.+|+.+..+
T Consensus 128 ~~l~~~l~~~~~ 139 (477)
T PTZ00102 128 DGIVSWIKKLTG 139 (477)
T ss_pred HHHHHHHHHhhC
Confidence 778899888754
No 252
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=21.03 E-value=1.1e+02 Score=18.92 Aligned_cols=15 Identities=7% Similarity=-0.268 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHccc
Q 030071 112 RALNLQAASIISSSM 126 (183)
Q Consensus 112 ra~~~~~~~~~~~~l 126 (183)
+.+|.+|+.|+...+
T Consensus 10 ~~~V~~WL~Wa~~ef 24 (75)
T cd08540 10 TDHVRQWLEWAVKEY 24 (75)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788999999997765
No 253
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.61 E-value=1.6e+02 Score=17.73 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=23.7
Q ss_pred EeeeCCCchHHHHHHHHHHhCCCceEEEe
Q 030071 25 LYSYWQSSCSWRVRFALKLKGLIYEYKAV 53 (183)
Q Consensus 25 Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v 53 (183)
+..+.....+.++.-.|+..|++++.+.+
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~ 33 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPT 33 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 34456777899999999999999988855
No 254
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.57 E-value=1.5e+02 Score=15.50 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=19.9
Q ss_pred CCcccEEEeCCEEeecHHHHHHHHH
Q 030071 71 LHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 71 ~g~vP~L~~~g~~l~eS~aI~~yL~ 95 (183)
.|.+|....++..+.....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 5778887667788888888888875
No 255
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=20.08 E-value=80 Score=19.78 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=29.0
Q ss_pred CceEEeeeCCCchHHHHHHHHHHhCC------CceEEEecCCCCCCCChhhhhcCCCCcccEEE
Q 030071 21 SKLVLYSYWQSSCSWRVRFALKLKGL------IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~Ly~~~~s~~~~~v~~~L~~~gi------~~~~~~v~~~~~~~~~~~~~~~~P~g~vP~L~ 78 (183)
..+.+|+.++|+.|+...-.++...- .+....++... . +.........+|++.
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA----N-DVPSEFVVDGFPTIL 78 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc----h-hhhhhccCCCCCEEE
Confidence 34666777899999876555543321 24444455321 1 222222237899887
No 256
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.03 E-value=2.5e+02 Score=18.57 Aligned_cols=29 Identities=17% Similarity=-0.048 Sum_probs=22.6
Q ss_pred eEEeeeCCCchHHHHHHHHHHhCCCceEE
Q 030071 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYK 51 (183)
Q Consensus 23 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~ 51 (183)
-.|-.....|...-++.+.+++|+|++..
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEe
Confidence 34445567788889999999999998865
Done!