BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030072
MAYQQSLNLRIHSFWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSI
NLSTNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEESAVNPKPSNGRVMLIDGTSIIY
RAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCFSCPSCMSMFH
VPI

High Scoring Gene Products

Symbol, full name Information P value
AT3G52050 protein from Arabidopsis thaliana 6.9e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030072
        (183 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi...   340  6.9e-31   1


>TAIR|locus:2083775 [details] [associations]
            symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
            InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
            InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
            SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
            EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
            IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
            ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
            PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
            KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
            PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
            Uniprot:A8MQG8
        Length = 448

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 86/169 (50%), Positives = 108/169 (63%)

Query:     6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCC-LSINL 62
             +L+L  HS   WR+L CF      P+  GN L N +   L   S ++S K  C  ++++ 
Sbjct:    25 TLHLYHHSRFLWRNL-CF------PRSVGN-LCN-RNCSLISPSLARSAKYYCSSVAVSE 75

Query:    63 STNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEES-AVNPKPSNGRVMLIDGTSIIYR 121
              +N    G     S +TSIS+         P K EE  A     SNGRVMLIDGTSIIYR
Sbjct:    76 FSNEAASG-----STLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYR 130

Query:   122 AYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
             AYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHVAV F
Sbjct:   131 AYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVF 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183       183   0.00076  110 3  11 22  0.37    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  161 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.04u 0.15s 16.19t   Elapsed:  00:00:01
  Total cpu time:  16.04u 0.15s 16.19t   Elapsed:  00:00:01
  Start:  Fri May 10 07:04:11 2013   End:  Fri May 10 07:04:12 2013

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