BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030072
(183 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359478321|ref|XP_002275974.2| PREDICTED: DNA polymerase I-like [Vitis vinifera]
gi|296084279|emb|CBI24667.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 120/173 (69%), Gaps = 3/173 (1%)
Query: 1 MAYQQSLNLRIHSFWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSI 60
MA +S + I W +LNC+R FS+ Q+ GN ++R +L S S KG C LS
Sbjct: 1 MACYRSSHHHIRFLWGNLNCWRSSFSRTQKIGNNSCCLQRRNLIHSPSILSRKGCCTLSN 60
Query: 61 NLSTNVRGVGR--ANFHSIVTSISDQTLSVEA-LDPVKFEESAVNPKPSNGRVMLIDGTS 117
+L +++ V + ++ ++S S++ L A +D V +E ++ SNGRVMLIDGTS
Sbjct: 61 SLDSSIHEVAHTISYGNTTISSKSERKLCQGAFVDSVDHKERKMDISSSNGRVMLIDGTS 120
Query: 118 IIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
IIYRAYYK+LAKLHHG+LSHADGNGDWVLTIF+ALSLI+DVL+FIPSHVAV F
Sbjct: 121 IIYRAYYKLLAKLHHGYLSHADGNGDWVLTIFAALSLIVDVLDFIPSHVAVVF 173
>gi|255579460|ref|XP_002530573.1| hypothetical protein RCOM_0547690 [Ricinus communis]
gi|223529872|gb|EEF31803.1| hypothetical protein RCOM_0547690 [Ricinus communis]
Length = 180
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 113/180 (62%), Gaps = 12/180 (6%)
Query: 1 MAYQQSLNLRIHS-FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLS 59
MAY QSLNLR+ S WR+ N +K + +R G+ L N+K SS+ S KG +S
Sbjct: 1 MAYCQSLNLRVQSSLWRNFNYLGEKLKRARRVGSFLSNLKTLVQIHPSSTLSKKGFYGIS 60
Query: 60 INLSTNVRGVGRANFHSIVTSISDQTLSVEA--LDPVKFEESAVNP---------KPSNG 108
S + + S TS + + + D +K+EE VN PSNG
Sbjct: 61 STSSALPQDACVTSRSSTFTSSEELHMPHQGAIFDSIKYEERLVNTTSQSDVANSSPSNG 120
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAV 168
R+MLIDGTSIIYRAYYK+LAKLHHGHLS ADGNGDWVLTIFSALSLIIDVLEFIPSHV V
Sbjct: 121 RLMLIDGTSIIYRAYYKLLAKLHHGHLSQADGNGDWVLTIFSALSLIIDVLEFIPSHVVV 180
>gi|357475547|ref|XP_003608059.1| DNA polymerase I [Medicago truncatula]
gi|355509114|gb|AES90256.1| DNA polymerase I [Medicago truncatula]
Length = 491
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 87/129 (67%), Gaps = 4/129 (3%)
Query: 42 DLARLSSSQSTKGSCCLSINLSTNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEESAV 101
+L R S + +KG CC+S L ++ GV A S T +S A PV
Sbjct: 47 NLLRSSRAPLSKGFCCVS--LDSHKDGVVSAT--SPSTGTVPPEISYGAAQPVHIGSVTN 102
Query: 102 NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEF 161
+NGRVMLIDGTS+I+RAYYK+LAKLHHGHL+HADGNGDWVLTIFSALS IIDVLEF
Sbjct: 103 ADAAANGRVMLIDGTSVIHRAYYKLLAKLHHGHLAHADGNGDWVLTIFSALSFIIDVLEF 162
Query: 162 IPSHVAVCF 170
IPSHV V F
Sbjct: 163 IPSHVVVVF 171
>gi|449453197|ref|XP_004144345.1| PREDICTED: DNA polymerase I-like [Cucumis sativus]
Length = 461
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 19/160 (11%)
Query: 21 FRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSINLSTNVRGVGRANFHSIVTS 80
F KF P R + I F S S KG C S ++++ AN V +
Sbjct: 43 FTSKFPHPFRFSTSSSRIHSF--PSFSLLLSPKGYCSSSGSINS-------ANTMDTVPT 93
Query: 81 ISDQTLSVEALDPVKFEESAVNP----------KPSNGRVMLIDGTSIIYRAYYKILAKL 130
+ S V+F++S NP P++ RVMLIDGTSII+RAYYK+LAKL
Sbjct: 94 YHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKL 153
Query: 131 HHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
HHGHLSHADGNGDWVLTIF+ALSLI+DVLE +PSHVAV F
Sbjct: 154 HHGHLSHADGNGDWVLTIFTALSLIVDVLEIMPSHVAVVF 193
>gi|297816476|ref|XP_002876121.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
lyrata]
gi|297321959|gb|EFH52380.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
lyrata]
Length = 454
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 110/171 (64%), Gaps = 15/171 (8%)
Query: 6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSINLS 63
+L+L HS WR+L CF + R GN L N + L S ++S K C + NL
Sbjct: 24 TLHLYHHSRFLWRNL-CFTR------RIGN-LCN-RNSSLISPSLARSAKYYCSSTCNLD 74
Query: 64 TNVRGVGR--ANFHSIVTSISDQTLSVEALD-PVKFEES-AVNPKPSNGRVMLIDGTSII 119
V + A+ + + + S+ ++ E + P K EE A SNGRVMLIDGTSII
Sbjct: 75 AAVSEISNDAASGNMLTSYKSEDVVAPETIKYPFKSEERVASTAASSNGRVMLIDGTSII 134
Query: 120 YRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
YRAYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHVAV F
Sbjct: 135 YRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVF 185
>gi|449480947|ref|XP_004156037.1| PREDICTED: DNA polymerase I, thermostable-like [Cucumis sativus]
Length = 112
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 69/80 (86%)
Query: 92 DPVKFEESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSA 151
+P+ F+E P++ RVMLIDGTSII+RAYYK+LAKLHHGHLSHADGNGDWVLTIF+A
Sbjct: 28 NPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTA 87
Query: 152 LSLIIDVLEFIPSHVAVCFS 171
LSLI+DVLE +PSHVAV F
Sbjct: 88 LSLIVDVLEIMPSHVAVVFD 107
>gi|42565846|ref|NP_190773.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|145362483|ref|NP_974414.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|109946597|gb|ABG48477.1| At3g52050 [Arabidopsis thaliana]
gi|332645358|gb|AEE78879.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645359|gb|AEE78880.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 425
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 108/169 (63%), Gaps = 18/169 (10%)
Query: 6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCC-LSINL 62
+L+L HS WR+L CF P+ GN L N + L S ++S K C ++++
Sbjct: 2 TLHLYHHSRFLWRNL-CF------PRSVGN-LCN-RNCSLISPSLARSAKYYCSSVAVSE 52
Query: 63 STNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEES-AVNPKPSNGRVMLIDGTSIIYR 121
+N G S +TSIS+ P K EE A SNGRVMLIDGTSIIYR
Sbjct: 53 FSNEAASG-----STLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYR 107
Query: 122 AYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
AYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHVAV F
Sbjct: 108 AYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVF 156
>gi|145332811|ref|NP_001078271.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645361|gb|AEE78882.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 413
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 108/169 (63%), Gaps = 18/169 (10%)
Query: 6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCC-LSINL 62
+L+L HS WR+L CF P+ GN L N + L S ++S K C ++++
Sbjct: 2 TLHLYHHSRFLWRNL-CF------PRSVGN-LCN-RNCSLISPSLARSAKYYCSSVAVSE 52
Query: 63 STNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEES-AVNPKPSNGRVMLIDGTSIIYR 121
+N G S +TSIS+ P K EE A SNGRVMLIDGTSIIYR
Sbjct: 53 FSNEAASG-----STLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYR 107
Query: 122 AYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
AYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHVAV F
Sbjct: 108 AYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVF 156
>gi|145332809|ref|NP_001078270.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645360|gb|AEE78881.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 448
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 108/169 (63%), Gaps = 18/169 (10%)
Query: 6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCC-LSINL 62
+L+L HS WR+L CF P+ GN L N + L S ++S K C ++++
Sbjct: 25 TLHLYHHSRFLWRNL-CF------PRSVGN-LCN-RNCSLISPSLARSAKYYCSSVAVSE 75
Query: 63 STNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEES-AVNPKPSNGRVMLIDGTSIIYR 121
+N G S +TSIS+ P K EE A SNGRVMLIDGTSIIYR
Sbjct: 76 FSNEAASG-----STLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYR 130
Query: 122 AYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
AYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHVAV F
Sbjct: 131 AYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVF 179
>gi|238480047|ref|NP_001154673.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332645362|gb|AEE78883.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 365
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 108/169 (63%), Gaps = 18/169 (10%)
Query: 6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCC-LSINL 62
+L+L HS WR+L CF P+ GN L N + L S ++S K C ++++
Sbjct: 25 TLHLYHHSRFLWRNL-CF------PRSVGN-LCN-RNCSLISPSLARSAKYYCSSVAVSE 75
Query: 63 STNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEES-AVNPKPSNGRVMLIDGTSIIYR 121
+N G S +TSIS+ P K EE A SNGRVMLIDGTSIIYR
Sbjct: 76 FSNEAASG-----STLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYR 130
Query: 122 AYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
AYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL+IDVL+F+PSHVAV F
Sbjct: 131 AYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVF 179
>gi|356519672|ref|XP_003528494.1| PREDICTED: DNA polymerase I, thermostable-like [Glycine max]
Length = 436
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 8 NLRIHSFWRSLNCFRKKFSKPQRTGNTLF--NIKRFDLARLSSSQSTKGSCCLSINLSTN 65
NL +HS + +K P T F N++ L R S + +KG C +
Sbjct: 9 NLFLHSHF-----LLRKLPFPSHVYATSFSRNLRTPWLLRSSRAPLSKGYCSATSESPGA 63
Query: 66 VRGVGRANFHSIVTSISDQTLSVEALDPVKFEESAVNPKPSNGRVMLIDGTSIIYRAYYK 125
V ++V T L E N P NGRVM+IDGTSII+RAYYK
Sbjct: 64 VPATPPTAAATLVPGAGIGTARAMQLGSAVNAERVTNSDPLNGRVMIIDGTSIIHRAYYK 123
Query: 126 ILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
+LAKLHHGHL+HADGNGDWVL +F+ALSLIIDVLEFIPSHV V F
Sbjct: 124 LLAKLHHGHLTHADGNGDWVLMMFTALSLIIDVLEFIPSHVVVVF 168
>gi|356502746|ref|XP_003520177.1| PREDICTED: DNA polymerase I, thermostable-like [Glycine max]
Length = 444
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 98/172 (56%), Gaps = 9/172 (5%)
Query: 5 QSLNLRIHSFWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSINLST 64
Q L L HSFWR L F + + T N L+ S + +KG C +
Sbjct: 8 QFLFLHSHSFWRKL-PFPRHVTASGFTCN--LQTPSLLLSSRSRALLSKGYCRATSESPG 64
Query: 65 NVRGVGRANFHSIV----TSISDQTLSVEALDP--VKFEESAVNPKPSNGRVMLIDGTSI 118
V R+ S I T + +AL E N +P NGRVM+IDGTSI
Sbjct: 65 AVPATPRSAAASGTLIPEAGIGIGTGTAQALQSGSAGNAELVTNAEPLNGRVMIIDGTSI 124
Query: 119 IYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
I+RAYYK+LAKLHHGHL+HADGNGDWVL +F+ALSLIIDVL+FIPSHV V F
Sbjct: 125 IHRAYYKLLAKLHHGHLTHADGNGDWVLMMFTALSLIIDVLKFIPSHVVVVF 176
>gi|218192373|gb|EEC74800.1| hypothetical protein OsI_10602 [Oryza sativa Indica Group]
Length = 421
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 98 ESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID 157
+S + PS R+ML+DGTS++YR+YYKILA+L HG L HADGNGDWVLTIF ALSL++D
Sbjct: 81 DSVAHADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLD 140
Query: 158 VLEFIPSHVAVCF 170
+LEFIPSH AV F
Sbjct: 141 MLEFIPSHAAVVF 153
>gi|115451687|ref|NP_001049444.1| Os03g0227300 [Oryza sativa Japonica Group]
gi|108706959|gb|ABF94754.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
protein, expressed [Oryza sativa Japonica Group]
gi|113547915|dbj|BAF11358.1| Os03g0227300 [Oryza sativa Japonica Group]
gi|215704203|dbj|BAG93043.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624502|gb|EEE58634.1| hypothetical protein OsJ_10000 [Oryza sativa Japonica Group]
Length = 421
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 98 ESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID 157
+S + PS R+ML+DGTS++YR+YYKILA+L HG L HADGNGDWVLTIF ALSL++D
Sbjct: 81 DSVAHADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLD 140
Query: 158 VLEFIPSHVAVCF 170
+LEFIPSH AV F
Sbjct: 141 MLEFIPSHAAVVF 153
>gi|108706960|gb|ABF94755.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
protein, expressed [Oryza sativa Japonica Group]
Length = 416
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 98 ESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID 157
+S + PS R+ML+DGTS++YR+YYKILA+L HG L HADGNGDWVLTIF ALSL++D
Sbjct: 76 DSVAHADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLD 135
Query: 158 VLEFIPSHVAVCF 170
+LEFIPSH AV F
Sbjct: 136 MLEFIPSHAAVVF 148
>gi|242036411|ref|XP_002465600.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
gi|241919454|gb|EER92598.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
Length = 421
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 83 DQTLSVEALDPVKFEESAV-NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGN 141
D ++S LD + V + PS R+ML+DGTS++YR+YYKILA+L HG L HADGN
Sbjct: 66 DDSISSSILDTLSNPTEVVPHADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGN 125
Query: 142 GDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
GDWVLTIF ALSL++D+LEFIPSH AV F
Sbjct: 126 GDWVLTIFKALSLLLDMLEFIPSHAAVVF 154
>gi|226530274|ref|NP_001151880.1| DNA polymerase I [Zea mays]
gi|195650551|gb|ACG44743.1| DNA polymerase I [Zea mays]
Length = 422
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 83 DQTLSVEALDPVKFEESAV-NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGN 141
D ++S LD + V + PS R+ML+DGTS++YR+YYKILA+L HG L HADGN
Sbjct: 66 DDSVSSSILDTLSNPTGGVPHADPSKSRIMLVDGTSMMYRSYYKILAQLQHGQLEHADGN 125
Query: 142 GDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
GDWVLTIF ALSL++D+LEFIPSH AV F
Sbjct: 126 GDWVLTIFKALSLLLDMLEFIPSHAAVVF 154
>gi|194696700|gb|ACF82434.1| unknown [Zea mays]
gi|195654367|gb|ACG46651.1| DNA polymerase I [Zea mays]
gi|413956435|gb|AFW89084.1| DNA polymerase I [Zea mays]
Length = 422
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 83 DQTLSVEALDPVKFEESAV-NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGN 141
D ++S LD + V + PS R+ML+DGTS++YR+YYKILA+L HG L HADGN
Sbjct: 66 DDSVSSSILDTLSNPTGGVPHADPSKSRIMLVDGTSMMYRSYYKILAQLQHGQLEHADGN 125
Query: 142 GDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
GDWVLTIF ALSL++D+LEFIPSH AV F
Sbjct: 126 GDWVLTIFKALSLLLDMLEFIPSHAAVVF 154
>gi|413956436|gb|AFW89085.1| hypothetical protein ZEAMMB73_456847 [Zea mays]
Length = 163
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 83 DQTLSVEALDPVKFEESAV-NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGN 141
D ++S LD + V + PS R+ML+DGTS++YR+YYKILA+L HG L HADGN
Sbjct: 66 DDSVSSSILDTLSNPTGGVPHADPSKSRIMLVDGTSMMYRSYYKILAQLQHGQLEHADGN 125
Query: 142 GDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
GDWVLTIF ALSL++D+LEFIPSH AV F
Sbjct: 126 GDWVLTIFKALSLLLDMLEFIPSHAAVVF 154
>gi|224121808|ref|XP_002330658.1| predicted protein [Populus trichocarpa]
gi|222872262|gb|EEF09393.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 55/61 (90%)
Query: 111 MLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
MLIDGTS+IYRAY+K+LAK+HHGHL+HADGNGDWVLTIFSALS IIDVL F+PSH V F
Sbjct: 1 MLIDGTSVIYRAYFKLLAKVHHGHLTHADGNGDWVLTIFSALSFIIDVLGFMPSHAVVVF 60
Query: 171 S 171
Sbjct: 61 D 61
>gi|4678934|emb|CAB41325.1| putative protein [Arabidopsis thaliana]
Length = 384
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 95/155 (61%), Gaps = 18/155 (11%)
Query: 6 SLNLRIHS--FWRSLNCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCC-LSINL 62
+L+L HS WR+L CF P+ GN L N + L S ++S K C ++++
Sbjct: 25 TLHLYHHSRFLWRNL-CF------PRSVGN-LCN-RNCSLISPSLARSAKYYCSSVAVSE 75
Query: 63 STNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEES-AVNPKPSNGRVMLIDGTSIIYR 121
+N G S +TSIS+ P K EE A SNGRVMLIDGTSIIYR
Sbjct: 76 FSNEAASG-----STLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYR 130
Query: 122 AYYKILAKLHHGHLSHADGNGDWVLTIFSALSLII 156
AYYK+LA+L+HGHL+HADGN DWVLTIFS+LSL++
Sbjct: 131 AYYKLLARLNHGHLAHADGNADWVLTIFSSLSLVV 165
>gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa Japonica Group]
Length = 443
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 60/95 (63%), Gaps = 22/95 (23%)
Query: 98 ESAVNPKPSNGRVMLIDGTSIIYRAYYKILAK----------------------LHHGHL 135
+S + PS R+ML+DGTS++YR+YYKIL K L HG L
Sbjct: 81 DSVAHADPSKSRIMLVDGTSVMYRSYYKILGKCFLILFVTSVLVYYVWLLLLIKLQHGQL 140
Query: 136 SHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCF 170
HADGNGDWVLTIF ALSL++D+LEFIPSH AV F
Sbjct: 141 EHADGNGDWVLTIFKALSLVLDMLEFIPSHAAVVF 175
>gi|148906869|gb|ABR16580.1| unknown [Picea sitchensis]
Length = 400
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 58/68 (85%)
Query: 104 KPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIP 163
K +NGR+MLIDGT+ +YRAYY+++A LH+G+L HADGNGDWVL+IF ALS ++D+LE P
Sbjct: 108 KLANGRLMLIDGTAAMYRAYYQLMASLHYGNLEHADGNGDWVLSIFKALSTMLDMLELCP 167
Query: 164 SHVAVCFS 171
SH+AV F
Sbjct: 168 SHIAVVFD 175
>gi|357113266|ref|XP_003558425.1| PREDICTED: DNA polymerase I-like [Brachypodium distachyon]
Length = 419
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 98 ESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID 157
E+ PS R+ML+DGTS++YR+YYKILA+L HG L HADGNGDWVLTIF ALSL++D
Sbjct: 79 ENVAPADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLLLD 138
Query: 158 VLEFIPSHVAVCF 170
+LE IPSHVAV F
Sbjct: 139 MLELIPSHVAVVF 151
>gi|147858394|emb|CAN81408.1| hypothetical protein VITISV_010447 [Vitis vinifera]
Length = 734
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 42/42 (100%)
Query: 127 LAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAV 168
+AKLHHG+LSHADGNGDWVLTIF+ALSLI+DVL+FIPSHVAV
Sbjct: 15 VAKLHHGYLSHADGNGDWVLTIFAALSLIVDVLDFIPSHVAV 56
>gi|302802031|ref|XP_002982771.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
gi|300149361|gb|EFJ16016.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
Length = 363
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSH 165
S GR++L+DG+++I+RAYYK++AK HH + + DWVLT+F+A + I+ +L+ PSH
Sbjct: 12 SKGRILLVDGSAVIFRAYYKVMAKAHHNLIPELESEADWVLTVFTAFTTILGLLDLSPSH 71
Query: 166 VAVCFS----------CPSCMSMF 179
AV F C +C+ +F
Sbjct: 72 FAVVFDHKGGFADEQRCKTCVFIF 95
>gi|302818496|ref|XP_002990921.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
gi|300141252|gb|EFJ07965.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
Length = 363
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSH 165
S GR++L+DG+++I+RAYYK++AK HH + + DWVLT+F+A + I+ +L+ PSH
Sbjct: 12 SKGRILLVDGSAVIFRAYYKVMAKAHHNLIPELESEADWVLTVFTAFTTILGLLDLSPSH 71
Query: 166 VAVCFS----------CPSCMSMF 179
AV F C +C+ +F
Sbjct: 72 FAVVFDHKGGFADEQRCKTCVFIF 95
>gi|168027127|ref|XP_001766082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682725|gb|EDQ69141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 310
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVC 169
++L+DG +I+YRAY+KI+AK+ +G L DWVLT+F+ALS +I +L+ P+HVA
Sbjct: 1 LLLLDGNAILYRAYFKIMAKVQYGSLKDMGSEADWVLTVFTALSTMIRLLDTKPTHVAAA 60
Query: 170 FS 171
F
Sbjct: 61 FD 62
>gi|303285890|ref|XP_003062235.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456646|gb|EEH53947.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 565
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 17/69 (24%)
Query: 108 GRVMLIDGTSIIYRAYY------KILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEF 161
G V L+DG S+++RA+Y +LA NG+ + ++S I+ +LE
Sbjct: 166 GHVALVDGMSLVFRAFYGWRNREPLLAT-----------NGEDLSVMYSVTHAILAILEL 214
Query: 162 IPSHVAVCF 170
PSHVAVCF
Sbjct: 215 APSHVAVCF 223
>gi|410634273|ref|ZP_11344910.1| response regulator receiver [Glaciecola arctica BSs20135]
gi|410146129|dbj|GAC21777.1| response regulator receiver [Glaciecola arctica BSs20135]
Length = 314
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 60 INLSTNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEESAVNPKPSNGRVMLIDGTSII 119
+ + V G GR F+ +V S+ Q V+ + + S P P + V+++D +++I
Sbjct: 147 VTVPITVEGAGRYYFNLLVRSVDYQVSEVKRDESTGIKNSHTKPLPLDATVLVVDDSALI 206
Query: 120 YRAYYKILAKLHHGHLSHAD 139
+A ++LAKL + +L AD
Sbjct: 207 RKALKRMLAKLGYNNLLEAD 226
>gi|340359950|ref|ZP_08682421.1| DNA polymerase I [Actinomyces sp. oral taxon 448 str. F0400]
gi|339883717|gb|EGQ73549.1| DNA polymerase I [Actinomyces sp. oral taxon 448 str. F0400]
Length = 942
Score = 42.7 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEF- 161
P P+ GR++L+DG S+ +RA+Y + S G + +S+ + +LE
Sbjct: 11 PAPAGGRLLLVDGHSMAFRAFYALPVD------SFTTSTGQTTNAVHGFVSMFLSLLERE 64
Query: 162 IPSHVAVCFSCP 173
P+HVAV F P
Sbjct: 65 EPTHVAVAFDLP 76
>gi|365824973|ref|ZP_09366933.1| hypothetical protein HMPREF0045_00569 [Actinomyces graevenitzii
C83]
gi|365259161|gb|EHM89156.1| hypothetical protein HMPREF0045_00569 [Actinomyces graevenitzii
C83]
Length = 891
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEF-IPSH 165
N R++LIDG S+ +RA+Y + A+ + +G G + LS+ + +LE PSH
Sbjct: 3 NKRLLLIDGHSMAFRAFYALPAE------NFVNGAGQHTNAVHGFLSMFLGLLEAEQPSH 56
Query: 166 VAVCFSCP 173
VAV F P
Sbjct: 57 VAVAFDLP 64
>gi|308805154|ref|XP_003079889.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
gi|116058346|emb|CAL53535.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
Length = 322
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVC 169
++L+DG S ++RAYY A+ + L++A G VL +S I +LE P+H+AVC
Sbjct: 17 LILVDGLSFVFRAYYGWNARGNGEGLTNASGEDTSVL--YSYAHTICSLLEMRPTHLAVC 74
Query: 170 FSC 172
Sbjct: 75 MDA 77
>gi|425734866|ref|ZP_18853183.1| DNA polymerase I [Brevibacterium casei S18]
gi|425480802|gb|EKU47966.1| DNA polymerase I [Brevibacterium casei S18]
Length = 889
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPS 164
+N ++LIDG S+ YRA++ + A+ + A G IF +S++I+VL + PS
Sbjct: 4 ANESLLLIDGHSLAYRAFHALPAE------NFATSTGQTTNAIFGFISMLINVLRDEAPS 57
Query: 165 HVAVCF 170
HVAV F
Sbjct: 58 HVAVAF 63
>gi|410620153|ref|ZP_11331035.1| response regulator receiver [Glaciecola polaris LMG 21857]
gi|410160248|dbj|GAC35173.1| response regulator receiver [Glaciecola polaris LMG 21857]
Length = 315
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 60 INLSTNVRGVGRANFHSIVTSISDQTLSVEALDPVKFEESAVNPKPSNGRVMLIDGTSII 119
+ + + GVGR F+ +V S+ ++ + V E + R++L+D +++I
Sbjct: 147 VTVPITIEGVGRYYFNLLVRSVDYSEGGIKREESVSIENPHSKTLAKDSRILLVDDSAMI 206
Query: 120 YRAYYKILAKLHHGHLSHA-DGNG 142
+A + LAKL + ++ A DGNG
Sbjct: 207 RKALTRFLAKLGYNNVVEADDGNG 230
>gi|255081196|ref|XP_002507820.1| predicted protein [Micromonas sp. RCC299]
gi|226523096|gb|ACO69078.1| predicted protein [Micromonas sp. RCC299]
Length = 223
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVA 167
G V+L+DG S+I+R++Y + + G+ V +S I+ VLE P+H+A
Sbjct: 1 GHVVLVDGMSMIFRSFYGWKNRAE----PLLNSKGEDVSVQYSVAHAILGVLELDPTHLA 56
Query: 168 VCFSC 172
VCF
Sbjct: 57 VCFDA 61
>gi|412993369|emb|CCO16902.1| DNA polymerase I [Bathycoccus prasinos]
Length = 403
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVA 167
G ++L+DG S ++RA+Y A+ L ++ G VL ++ + +LE PSH A
Sbjct: 92 GHIVLVDGMSFLFRAFYGFQARSDATKLINSKGEDVGVLHAYA--HAMCALLESKPSHFA 149
Query: 168 VCFS 171
VCF
Sbjct: 150 VCFD 153
>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
Length = 871
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
Query: 109 RVMLIDGTSIIYRAYYKI-LAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHV 166
RVM+IDG S++YRA+Y + L + G ++A ++ L+++ VL E+ PSH+
Sbjct: 5 RVMIIDGNSLLYRAFYALPLLRNRRGTFTNA---------VYGFLNMLSKVLSEYQPSHI 55
Query: 167 AVCF 170
V F
Sbjct: 56 IVAF 59
>gi|420153181|ref|ZP_14660174.1| DNA-directed DNA polymerase [Actinomyces massiliensis F0489]
gi|394761609|gb|EJF43957.1| DNA-directed DNA polymerase [Actinomyces massiliensis F0489]
Length = 938
Score = 40.0 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 99 SAVNPKP-SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID 157
+A +P P S GR++L+DG S+ +RA+Y + S G + +S+ +
Sbjct: 4 TATSPAPESTGRLLLVDGHSMAFRAFYALPVD------SFTTSTGQPTNAVHGFVSMFLS 57
Query: 158 VLEF-IPSHVAVCFSCP 173
++E P+HVAV F P
Sbjct: 58 LIEQEEPTHVAVAFDLP 74
>gi|337287066|ref|YP_004626539.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
gi|335359894|gb|AEH45575.1| DNA polymerase I [Thermodesulfatator indicus DSM 15286]
Length = 903
Score = 40.0 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVAV 168
+ +IDG+S +YRAYY I GHLS+ G +F +++ +L E P +V V
Sbjct: 20 IFVIDGSSFVYRAYYAI-----RGHLSNRKGLP--TKAVFGFTQMLLKLLREMNPEYVVV 72
Query: 169 CF 170
CF
Sbjct: 73 CF 74
>gi|429205420|ref|ZP_19196697.1| DNA polymerase I [Lactobacillus saerimneri 30a]
gi|428146492|gb|EKW98731.1| DNA polymerase I [Lactobacillus saerimneri 30a]
Length = 887
Score = 39.7 bits (91), Expect = 0.50, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHV 166
N R++L+DG SII+RA+Y I +L + H + + L + S L+ + PSHV
Sbjct: 5 NTRLLLVDGNSIIFRAFYAIRTQLTNHDGLHTNAIYGFKLMLDSVLT------TYDPSHV 58
Query: 167 AVCF 170
V F
Sbjct: 59 LVAF 62
>gi|145347581|ref|XP_001418242.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578471|gb|ABO96535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 233
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVC 169
++L+DG S ++RAYY A+ L+++ G VL +S I +LE P+H+AVC
Sbjct: 1 LILVDGLSFVFRAYYGWNARGSGEGLTNSAGEDTSVL--YSYAHTICSLLELKPTHLAVC 58
Query: 170 FSC 172
Sbjct: 59 MDA 61
>gi|329923373|ref|ZP_08278856.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Paenibacillus sp. HGF5]
gi|328941364|gb|EGG37657.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Paenibacillus sp. HGF5]
Length = 104
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 102 NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE- 160
NP+PS +ML+DG ++++RAYY A G++ G I+ L + D ++
Sbjct: 6 NPQPS---LMLVDGMALLFRAYY---ATASSGYIRRTKA-GVPTNAIYGFLRYMWDAIDK 58
Query: 161 FIPSHVAVCFS 171
F P+HVA C+
Sbjct: 59 FQPTHVACCWD 69
>gi|406925883|gb|EKD62260.1| hypothetical protein ACD_52C00252G0002 [uncultured bacterium]
Length = 318
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 101 VNPKPSNGRV--MLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDV 158
++P S+G+V +LIDG +I++RAY+ + G G+ + ++ +S+++ +
Sbjct: 1 MDPSASSGQVKLVLIDGNAIMHRAYHALPPLTTRG--------GEPINAVYGLVSMLLKI 52
Query: 159 L-EFIPSHVAVCFS 171
+ +F P+H+AV F
Sbjct: 53 ITDFKPTHIAVAFD 66
>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
Length = 1855
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 97 EESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLII 156
E+ +N +N V++IDGT + Y+AY I H NG+ + +F ++
Sbjct: 765 EKQKLNLDQNNNHVVIIDGTPLAYKAYNTISGLTH---------NGEPIGALFGFTKALL 815
Query: 157 DVL-EFIPSHVAVCFS 171
+L E P +V VCF
Sbjct: 816 KILKELKPDYVLVCFD 831
>gi|374314445|ref|YP_005060874.1| 5'-3' exonuclease [Serratia symbiotica str. 'Cinara cedri']
gi|363988671|gb|AEW44862.1| 5'-3' exonuclease domain of DNA polymerase I [Serratia symbiotica
str. 'Cinara cedri']
Length = 922
Score = 38.9 bits (89), Expect = 0.90, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE-FIPSHVAV 168
++L+DG+S +YRAYY L LH + G+ + I+ L+++ +L+ + PSH+AV
Sbjct: 9 LILVDGSSYLYRAYYA-LPSLH-------NSAGEPIGAIYGVLNMLRRLLQAYKPSHIAV 60
Query: 169 CF 170
F
Sbjct: 61 VF 62
>gi|379715227|ref|YP_005303564.1| DNA polymerase I [Corynebacterium pseudotuberculosis 316]
gi|387138531|ref|YP_005694510.1| DNA polymerase I [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387140531|ref|YP_005696509.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850283|ref|YP_006352518.1| DNA polymerase I [Corynebacterium pseudotuberculosis 258]
gi|349735009|gb|AEQ06487.1| DNA polymerase I [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355392322|gb|AER68987.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653933|gb|AFB72282.1| DNA polymerase I [Corynebacterium pseudotuberculosis 316]
gi|388247589|gb|AFK16580.1| DNA polymerase I [Corynebacterium pseudotuberculosis 258]
Length = 886
Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPS 164
++ R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E PS
Sbjct: 4 TSNRLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLNEEKPS 57
Query: 165 HVAVCF 170
HVAV F
Sbjct: 58 HVAVAF 63
>gi|337290610|ref|YP_004629631.1| DNA polymerase I [Corynebacterium ulcerans BR-AD22]
gi|334698916|gb|AEG83712.1| DNA polymerase I [Corynebacterium ulcerans BR-AD22]
Length = 886
Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPS 164
++ R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E PS
Sbjct: 4 TSNRLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLNEEKPS 57
Query: 165 HVAVCF 170
HVAV F
Sbjct: 58 HVAVAF 63
>gi|384515523|ref|YP_005710615.1| DNA polymerase I [Corynebacterium ulcerans 809]
gi|334696724|gb|AEG81521.1| DNA polymerase I [Corynebacterium ulcerans 809]
Length = 886
Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPS 164
++ R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E PS
Sbjct: 4 TSNRLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLNEEKPS 57
Query: 165 HVAVCF 170
HVAV F
Sbjct: 58 HVAVAF 63
>gi|384508707|ref|YP_005685375.1| DNA polymerase I [Corynebacterium pseudotuberculosis I19]
gi|308276303|gb|ADO26202.1| DNA polymerase I [Corynebacterium pseudotuberculosis I19]
Length = 886
Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPS 164
++ R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E PS
Sbjct: 4 TSNRLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLNEEKPS 57
Query: 165 HVAVCF 170
HVAV F
Sbjct: 58 HVAVAF 63
>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
gi|383314107|ref|YP_005374962.1| DNA polymerase I [Corynebacterium pseudotuberculosis P54B96]
gi|384504526|ref|YP_005681196.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
gi|384506619|ref|YP_005683288.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
gi|384510798|ref|YP_005690376.1| DNA polymerase I [Corynebacterium pseudotuberculosis PAT10]
gi|385807397|ref|YP_005843794.1| DNA polymerase I [Corynebacterium pseudotuberculosis 267]
gi|387136460|ref|YP_005692440.1| DNA polymerase I [Corynebacterium pseudotuberculosis 42/02-A]
gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
gi|341824737|gb|AEK92258.1| DNA polymerase I [Corynebacterium pseudotuberculosis PAT10]
gi|348606905|gb|AEP70178.1| DNA polymerase I [Corynebacterium pseudotuberculosis 42/02-A]
gi|380869608|gb|AFF22082.1| DNA polymerase I [Corynebacterium pseudotuberculosis P54B96]
gi|383804790|gb|AFH51869.1| DNA polymerase I [Corynebacterium pseudotuberculosis 267]
Length = 886
Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPS 164
++ R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E PS
Sbjct: 4 TSNRLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLNEEKPS 57
Query: 165 HVAVCF 170
HVAV F
Sbjct: 58 HVAVAF 63
>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
Length = 891
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R++LIDG S+ YRA++ + + + A G +F S++I+VL + P+HVA
Sbjct: 6 RLLLIDGHSVAYRAFFALPVE------NFATTTGQHTNAVFGFTSMLINVLRDETPTHVA 59
Query: 168 VCF 170
V F
Sbjct: 60 VAF 62
>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
Length = 893
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 105 PSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIP 163
P+ ++L+DG S+ YRA+Y L +L +DG ++ S++ +VL + P
Sbjct: 8 PTRPCLLLLDGHSLAYRAFY----ALRDANLMTSDGQH--TEAVYGFTSMLTNVLRDERP 61
Query: 164 SHVAVCF 170
SH+AVCF
Sbjct: 62 SHIAVCF 68
>gi|261408888|ref|YP_003245129.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
protein [Paenibacillus sp. Y412MC10]
gi|261285351|gb|ACX67322.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
[Paenibacillus sp. Y412MC10]
Length = 298
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 102 NPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE- 160
NP+PS +ML+DG ++++RAYY A G++ G I+ L + D ++
Sbjct: 6 NPQPS---LMLVDGMALLFRAYY---ATASSGYIRRTKA-GVPTNAIYGFLRYMWDAIDK 58
Query: 161 FIPSHVAVCFSCPS 174
F P+HVA C+ S
Sbjct: 59 FQPTHVACCWDMGS 72
>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 901
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 105 PSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIP 163
P+ ++L+DG S+ YRA+Y + + + + G +F S++++VL + P
Sbjct: 8 PTRPCLLLLDGHSLAYRAFYALPEE------NFSTTTGQTTNAVFGFTSMLVNVLRDEQP 61
Query: 164 SHVAVCF 170
+HVAVCF
Sbjct: 62 THVAVCF 68
>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
Length = 945
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 105 PSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIP 163
P+ R++L+DG S+ YRA+Y + + + + G ++ S++I+VL + P
Sbjct: 55 PATPRLLLLDGHSLAYRAFYALPVE------NFSTTTGQPTNAVYGFTSMLINVLRDERP 108
Query: 164 SHVAVCFSCPS 174
+HVAV + P+
Sbjct: 109 THVAVAWDLPT 119
>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
Length = 939
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 103 PKPSNGR-VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-E 160
P P+ GR ++L+DG S+ YRA++ + A+ + G G ++ S++I++L +
Sbjct: 28 PVPAGGRRLLLLDGHSLAYRAFFALPAE------NFRTGTGQTTNAVYGFTSMLINLLRD 81
Query: 161 FIPSHVAVCF 170
P+H+AV F
Sbjct: 82 EQPTHLAVAF 91
>gi|24376141|ref|NP_720184.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
gi|24351181|gb|AAN57628.1| DNA polymerase I PolA [Shewanella oneidensis MR-1]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|336309600|ref|ZP_08564584.1| DNA polymerase I [Shewanella sp. HN-41]
gi|335866911|gb|EGM71853.1| DNA polymerase I [Shewanella sp. HN-41]
Length = 920
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLTRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|386311837|ref|YP_006008002.1| DNA polymerase I [Shewanella putrefaciens 200]
gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
Length = 922
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P +N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIANNPLVLVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 QPSHIAVVF 62
>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
Length = 914
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 20/91 (21%)
Query: 91 LDPVKFEESAVNPK-----PSNGR--VMLIDGTSIIYRAYYKILA---KLHHGHLSHADG 140
+ P S +P PS+ R +ML+DG S+ +RA+Y + A K H G +++A
Sbjct: 1 MSPATTPRSTTSPASGAAAPSDDRPTLMLLDGHSLAFRAFYALPAENFKTHSGQVTNA-- 58
Query: 141 NGDWVLTIFSALSLIIDVL-EFIPSHVAVCF 170
++ S++I++L + P+HVA F
Sbjct: 59 -------VYGFTSMLINLLRDEQPTHVAAAF 82
>gi|325000598|ref|ZP_08121710.1| DNA polymerase I [Pseudonocardia sp. P1]
Length = 325
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 105 PSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIP 163
P R++L+DG S+ YRA++ + A+ + G G ++ S++I++L + P
Sbjct: 26 PDRPRLLLLDGHSLAYRAFFALPAE------NFRTGTGQTTNAVYGFTSMLINLLRDEEP 79
Query: 164 SHVAVCFSC 172
+H+AV F
Sbjct: 80 THLAVAFDV 88
>gi|384124486|ref|YP_005507100.1| DNA polymerase I, partial [Yersinia pestis D182038]
gi|262364150|gb|ACY60707.1| DNA polymerase I [Yersinia pestis D182038]
Length = 159
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID-VLEFIPSHVAV 168
++L+DG+S +YRAY H +G+G+ ++ L+++ +L++ PSHVAV
Sbjct: 9 LLLVDGSSYLYRAY--------HAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV 60
Query: 169 CFSC 172
F
Sbjct: 61 VFDA 64
>gi|167470382|ref|ZP_02335086.1| DNA polymerase I [Yersinia pestis FV-1]
Length = 140
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID-VLEFIPSHVAV 168
++L+DG+S +YRAY H +G+G+ ++ L+++ +L++ PSHVAV
Sbjct: 9 LLLVDGSSYLYRAY--------HAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV 60
Query: 169 CFSC 172
F
Sbjct: 61 VFDA 64
>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
Length = 893
Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 112 LIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVAVCF 170
L+DG+S IYRAYY I HLS G+ TI+ +++ +L E P HVAV F
Sbjct: 9 LVDGSSYIYRAYYAIR------HLSSPTGHP--TNTIYGFTQMLLKLLKEHQPRHVAVVF 60
>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
Length = 918
Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P N ++L+DG+S +YRAYY HL+++ G ++ ++++ +L +
Sbjct: 2 PTIPNNPLILVDGSSYLYRAYYA------PPHLTNSKGEATG--AVYGVVNMLRSLLSRY 53
Query: 162 IPSHVAVCF 170
PSH+AV F
Sbjct: 54 SPSHIAVVF 62
>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
Length = 904
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEF-IPSHVA 167
R++LIDG ++ +RA++ + A +DG G ++ ++I+V+ P+HVA
Sbjct: 10 RILLIDGHAMAFRAFFALPAD------GFSDGRGQATNAVYGFTRMLINVVASERPTHVA 63
Query: 168 VCFSCP 173
V F P
Sbjct: 64 VAFDLP 69
>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
Length = 917
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R++L+DG + YRAY+ + L A G+ +F S++++VL +F P +V
Sbjct: 9 RLVLVDGHGLAYRAYHALPPTL-------ATSAGEPTHVVFGFASMLLEVLNDFEPDYVI 61
Query: 168 VCF 170
VCF
Sbjct: 62 VCF 64
>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
Length = 917
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R++L+DG + YRAY+ + L A G+ +F S++++VL +F P +V
Sbjct: 9 RLVLVDGHGLAYRAYHALPPTL-------ATSAGEPTHVVFGFASMLLEVLNDFEPDYVI 61
Query: 168 VCF 170
VCF
Sbjct: 62 VCF 64
>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
Length = 917
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R++L+DG + YRAY+ + L A G+ +F S++++VL +F P +V
Sbjct: 9 RLVLVDGHGLAYRAYHALPPTL-------ATSAGEPTHVVFGFASMLLEVLNDFEPDYVI 61
Query: 168 VCF 170
VCF
Sbjct: 62 VCF 64
>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
Length = 950
Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 90 ALDPVKFEESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIF 149
A P K A KP + L+DG +++YRA+Y L +S DG + F
Sbjct: 20 AATPQKSPADAEKTKPG---LFLLDGMALVYRAFY----ALQQARMSTRDGVPTGAVFGF 72
Query: 150 SALSLIIDVLEFIPSHVAVCFSCP 173
A SL+ + E+ P ++AV F P
Sbjct: 73 -ATSLLRIIEEYRPDYLAVAFDSP 95
>gi|336119737|ref|YP_004574514.1| DNA polymerase I [Microlunatus phosphovorus NM-1]
gi|334687526|dbj|BAK37111.1| DNA polymerase I [Microlunatus phosphovorus NM-1]
Length = 901
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 105 PSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIP 163
P +++LIDG S+ YRA++ + + + + G +F S++I+VL + +P
Sbjct: 2 PERPKLLLIDGHSVAYRAFFALPVE------NFSTQTGQHTNGVFGFTSMLINVLRDEVP 55
Query: 164 SHVAVCF 170
+H+AV F
Sbjct: 56 THLAVAF 62
>gi|400291423|ref|ZP_10793441.1| DNA-directed DNA polymerase [Actinomyces naeslundii str. Howell
279]
gi|399903480|gb|EJN86217.1| DNA-directed DNA polymerase [Actinomyces naeslundii str. Howell
279]
Length = 944
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 86 LSVEALDPVKFEESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWV 145
+S A P + P R++LIDG S+ +RA+Y + + G
Sbjct: 1 MSTTATSPATSPTPQTSSDPVPDRLLLIDGHSMAFRAFYALPVD------NFTTSTGQST 54
Query: 146 LTIFSALSLIIDVLEF-IPSHVAVCFSCP 173
+ +S+ + +LE P+HVAV F P
Sbjct: 55 NAVHGFVSMFLSLLENERPTHVAVAFDLP 83
>gi|420555009|ref|ZP_15052116.1| DNA polymerase I, partial [Yersinia pestis PY-03]
gi|391438600|gb|EIQ99332.1| DNA polymerase I, partial [Yersinia pestis PY-03]
Length = 806
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID-VLEFIPSHVAV 168
++L+DG+S +YRAY H +G+G+ ++ L+++ +L++ PSHVAV
Sbjct: 9 LLLVDGSSYLYRAY--------HAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV 60
Query: 169 CF 170
F
Sbjct: 61 VF 62
>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
Length = 932
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID-VLEFIPSHVAV 168
++L+DG+S +YRAY H +G+G+ ++ L+++ +L++ PSHVAV
Sbjct: 9 LLLVDGSSYLYRAY--------HAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV 60
Query: 169 CF 170
F
Sbjct: 61 VF 62
>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM10+]
gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
gi|384120608|ref|YP_005503228.1| DNA polymerase I [Yersinia pestis D106004]
gi|384138000|ref|YP_005520702.1| DNA polymerase I [Yersinia pestis A1122]
gi|384416569|ref|YP_005625931.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420544025|ref|ZP_15042305.1| DNA polymerase I [Yersinia pestis PY-01]
gi|420549705|ref|ZP_15047375.1| DNA polymerase I [Yersinia pestis PY-02]
gi|420560395|ref|ZP_15056779.1| DNA polymerase I [Yersinia pestis PY-04]
gi|420565839|ref|ZP_15061678.1| DNA polymerase I [Yersinia pestis PY-05]
gi|420571301|ref|ZP_15066649.1| DNA polymerase I [Yersinia pestis PY-06]
gi|420576581|ref|ZP_15071425.1| DNA polymerase I [Yersinia pestis PY-07]
gi|420582034|ref|ZP_15076380.1| DNA polymerase I [Yersinia pestis PY-08]
gi|420592458|ref|ZP_15085783.1| DNA polymerase I [Yersinia pestis PY-09]
gi|420597790|ref|ZP_15090577.1| DNA polymerase I [Yersinia pestis PY-10]
gi|420598026|ref|ZP_15090785.1| DNA polymerase I [Yersinia pestis PY-11]
gi|420603500|ref|ZP_15095645.1| DNA polymerase I [Yersinia pestis PY-12]
gi|420608858|ref|ZP_15100507.1| DNA polymerase I [Yersinia pestis PY-13]
gi|420614435|ref|ZP_15105485.1| DNA polymerase I family protein [Yersinia pestis PY-14]
gi|420619720|ref|ZP_15110092.1| DNA polymerase I [Yersinia pestis PY-15]
gi|420624853|ref|ZP_15114736.1| DNA polymerase I [Yersinia pestis PY-16]
gi|420634939|ref|ZP_15123833.1| DNA polymerase I [Yersinia pestis PY-19]
gi|420635129|ref|ZP_15123996.1| DNA polymerase I [Yersinia pestis PY-25]
gi|420640746|ref|ZP_15129066.1| DNA polymerase I [Yersinia pestis PY-29]
gi|420650972|ref|ZP_15138348.1| DNA polymerase I [Yersinia pestis PY-32]
gi|420651609|ref|ZP_15138902.1| DNA polymerase I [Yersinia pestis PY-34]
gi|420656953|ref|ZP_15143729.1| DNA polymerase I [Yersinia pestis PY-36]
gi|420662127|ref|ZP_15148347.1| DNA polymerase I [Yersinia pestis PY-42]
gi|420672410|ref|ZP_15157672.1| DNA polymerase I family protein [Yersinia pestis PY-45]
gi|420677790|ref|ZP_15162571.1| DNA polymerase I [Yersinia pestis PY-46]
gi|420678137|ref|ZP_15162874.1| DNA polymerase I [Yersinia pestis PY-47]
gi|420683438|ref|ZP_15167639.1| DNA polymerase I [Yersinia pestis PY-48]
gi|420693865|ref|ZP_15176847.1| DNA polymerase I [Yersinia pestis PY-52]
gi|420694173|ref|ZP_15177119.1| DNA polymerase I [Yersinia pestis PY-53]
gi|420705727|ref|ZP_15186696.1| DNA polymerase I family protein [Yersinia pestis PY-54]
gi|420710681|ref|ZP_15191215.1| DNA polymerase I [Yersinia pestis PY-55]
gi|420716203|ref|ZP_15196106.1| DNA polymerase I [Yersinia pestis PY-56]
gi|420716471|ref|ZP_15196341.1| DNA polymerase I [Yersinia pestis PY-58]
gi|420722124|ref|ZP_15201148.1| DNA polymerase I [Yersinia pestis PY-59]
gi|420727693|ref|ZP_15206091.1| DNA polymerase I [Yersinia pestis PY-60]
gi|420737860|ref|ZP_15215275.1| DNA polymerase I [Yersinia pestis PY-61]
gi|420738255|ref|ZP_15215618.1| DNA polymerase I [Yersinia pestis PY-63]
gi|420743356|ref|ZP_15220211.1| DNA polymerase I [Yersinia pestis PY-64]
gi|420749354|ref|ZP_15225224.1| DNA polymerase I [Yersinia pestis PY-65]
gi|420760457|ref|ZP_15234575.1| DNA polymerase I [Yersinia pestis PY-66]
gi|420760611|ref|ZP_15234694.1| DNA polymerase I [Yersinia pestis PY-71]
gi|420765633|ref|ZP_15239240.1| DNA polymerase I [Yersinia pestis PY-72]
gi|420770826|ref|ZP_15243888.1| DNA polymerase I [Yersinia pestis PY-76]
gi|420776041|ref|ZP_15248609.1| DNA polymerase I [Yersinia pestis PY-88]
gi|420781442|ref|ZP_15253347.1| DNA polymerase I [Yersinia pestis PY-89]
gi|420786967|ref|ZP_15258170.1| DNA polymerase I family protein [Yersinia pestis PY-90]
gi|420792449|ref|ZP_15263117.1| DNA polymerase I [Yersinia pestis PY-91]
gi|420802870|ref|ZP_15272489.1| DNA polymerase I [Yersinia pestis PY-92]
gi|420802973|ref|ZP_15272574.1| DNA polymerase I [Yersinia pestis PY-93]
gi|420808238|ref|ZP_15277351.1| DNA polymerase I family protein [Yersinia pestis PY-94]
gi|420813715|ref|ZP_15282246.1| DNA polymerase I [Yersinia pestis PY-95]
gi|420819047|ref|ZP_15287103.1| DNA polymerase I [Yersinia pestis PY-96]
gi|420829404|ref|ZP_15296402.1| DNA polymerase I [Yersinia pestis PY-98]
gi|420829822|ref|ZP_15296761.1| DNA polymerase I [Yersinia pestis PY-99]
gi|420834867|ref|ZP_15301310.1| DNA polymerase I [Yersinia pestis PY-100]
gi|420845246|ref|ZP_15310725.1| DNA polymerase I [Yersinia pestis PY-101]
gi|420845622|ref|ZP_15311051.1| DNA polymerase I [Yersinia pestis PY-102]
gi|420850769|ref|ZP_15315681.1| DNA polymerase I [Yersinia pestis PY-103]
gi|420856406|ref|ZP_15320392.1| DNA polymerase I [Yersinia pestis PY-113]
gi|421761441|ref|ZP_16198241.1| DNA polymerase I [Yersinia pestis INS]
gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM10+]
gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342853129|gb|AEL71682.1| DNA polymerase I [Yersinia pestis A1122]
gi|391434738|gb|EIQ95899.1| DNA polymerase I [Yersinia pestis PY-02]
gi|391434977|gb|EIQ96095.1| DNA polymerase I [Yersinia pestis PY-01]
gi|391450511|gb|EIR10140.1| DNA polymerase I [Yersinia pestis PY-05]
gi|391451018|gb|EIR10563.1| DNA polymerase I [Yersinia pestis PY-04]
gi|391452375|gb|EIR11784.1| DNA polymerase I [Yersinia pestis PY-06]
gi|391453481|gb|EIR12793.1| DNA polymerase I [Yersinia pestis PY-09]
gi|391466715|gb|EIR24764.1| DNA polymerase I [Yersinia pestis PY-07]
gi|391467365|gb|EIR25351.1| DNA polymerase I [Yersinia pestis PY-10]
gi|391467553|gb|EIR25523.1| DNA polymerase I [Yersinia pestis PY-08]
gi|391484596|gb|EIR40834.1| DNA polymerase I [Yersinia pestis PY-12]
gi|391484982|gb|EIR41178.1| DNA polymerase I [Yersinia pestis PY-11]
gi|391498899|gb|EIR53604.1| DNA polymerase I [Yersinia pestis PY-13]
gi|391499180|gb|EIR53831.1| DNA polymerase I [Yersinia pestis PY-15]
gi|391500256|gb|EIR54779.1| DNA polymerase I [Yersinia pestis PY-19]
gi|391502336|gb|EIR56646.1| DNA polymerase I family protein [Yersinia pestis PY-14]
gi|391513900|gb|EIR67062.1| DNA polymerase I [Yersinia pestis PY-16]
gi|391516538|gb|EIR69427.1| DNA polymerase I [Yersinia pestis PY-25]
gi|391517582|gb|EIR70370.1| DNA polymerase I [Yersinia pestis PY-32]
gi|391529396|gb|EIR81090.1| DNA polymerase I [Yersinia pestis PY-29]
gi|391532088|gb|EIR83519.1| DNA polymerase I [Yersinia pestis PY-34]
gi|391535002|gb|EIR86121.1| DNA polymerase I family protein [Yersinia pestis PY-45]
gi|391546567|gb|EIR96543.1| DNA polymerase I [Yersinia pestis PY-36]
gi|391548382|gb|EIR98190.1| DNA polymerase I [Yersinia pestis PY-46]
gi|391548809|gb|EIR98568.1| DNA polymerase I [Yersinia pestis PY-42]
gi|391563323|gb|EIS11645.1| DNA polymerase I [Yersinia pestis PY-52]
gi|391563540|gb|EIS11846.1| DNA polymerase I [Yersinia pestis PY-47]
gi|391565484|gb|EIS13592.1| DNA polymerase I [Yersinia pestis PY-48]
gi|391566715|gb|EIS14674.1| DNA polymerase I family protein [Yersinia pestis PY-54]
gi|391578932|gb|EIS25125.1| DNA polymerase I [Yersinia pestis PY-55]
gi|391579094|gb|EIS25267.1| DNA polymerase I [Yersinia pestis PY-53]
gi|391580149|gb|EIS26179.1| DNA polymerase I [Yersinia pestis PY-56]
gi|391606774|gb|EIS49467.1| DNA polymerase I [Yersinia pestis PY-60]
gi|391608253|gb|EIS50765.1| DNA polymerase I [Yersinia pestis PY-61]
gi|391608547|gb|EIS51023.1| DNA polymerase I [Yersinia pestis PY-58]
gi|391609178|gb|EIS51603.1| DNA polymerase I [Yersinia pestis PY-59]
gi|391622214|gb|EIS63169.1| DNA polymerase I [Yersinia pestis PY-63]
gi|391623734|gb|EIS64470.1| DNA polymerase I [Yersinia pestis PY-66]
gi|391631264|gb|EIS70914.1| DNA polymerase I [Yersinia pestis PY-64]
gi|391632922|gb|EIS72400.1| DNA polymerase I [Yersinia pestis PY-65]
gi|391643976|gb|EIS82075.1| DNA polymerase I [Yersinia pestis PY-71]
gi|391647023|gb|EIS84706.1| DNA polymerase I [Yersinia pestis PY-72]
gi|391656567|gb|EIS93188.1| DNA polymerase I [Yersinia pestis PY-76]
gi|391664114|gb|EIS99880.1| DNA polymerase I [Yersinia pestis PY-88]
gi|391669288|gb|EIT04428.1| DNA polymerase I [Yersinia pestis PY-89]
gi|391670250|gb|EIT05309.1| DNA polymerase I family protein [Yersinia pestis PY-90]
gi|391673402|gb|EIT08128.1| DNA polymerase I [Yersinia pestis PY-91]
gi|391673777|gb|EIT08456.1| DNA polymerase I [Yersinia pestis PY-92]
gi|391687906|gb|EIT21176.1| DNA polymerase I [Yersinia pestis PY-93]
gi|391690645|gb|EIT23657.1| DNA polymerase I family protein [Yersinia pestis PY-94]
gi|391691607|gb|EIT24519.1| DNA polymerase I [Yersinia pestis PY-98]
gi|391702763|gb|EIT34613.1| DNA polymerase I [Yersinia pestis PY-95]
gi|391705298|gb|EIT36863.1| DNA polymerase I [Yersinia pestis PY-96]
gi|391706171|gb|EIT37631.1| DNA polymerase I [Yersinia pestis PY-101]
gi|391717328|gb|EIT47706.1| DNA polymerase I [Yersinia pestis PY-99]
gi|391721177|gb|EIT51138.1| DNA polymerase I [Yersinia pestis PY-100]
gi|391732011|gb|EIT60637.1| DNA polymerase I [Yersinia pestis PY-102]
gi|391735443|gb|EIT63583.1| DNA polymerase I [Yersinia pestis PY-103]
gi|391737910|gb|EIT65756.1| DNA polymerase I [Yersinia pestis PY-113]
gi|411177763|gb|EKS47775.1| DNA polymerase I [Yersinia pestis INS]
Length = 932
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIID-VLEFIPSHVAV 168
++L+DG+S +YRAY H +G+G+ ++ L+++ +L++ PSHVAV
Sbjct: 9 LLLVDGSSYLYRAY--------HAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV 60
Query: 169 CF 170
F
Sbjct: 61 VF 62
>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|419860719|ref|ZP_14383360.1| DNA polymerase I [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|387983113|gb|EIK56612.1| DNA polymerase I [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|376254224|ref|YP_005142683.1| DNA polymerase I [Corynebacterium diphtheriae PW8]
gi|372117308|gb|AEX69778.1| DNA polymerase I [Corynebacterium diphtheriae PW8]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|376248428|ref|YP_005140372.1| DNA polymerase I [Corynebacterium diphtheriae HC04]
gi|376251218|ref|YP_005138099.1| DNA polymerase I [Corynebacterium diphtheriae HC03]
gi|376257036|ref|YP_005144927.1| DNA polymerase I [Corynebacterium diphtheriae VA01]
gi|372112722|gb|AEX78781.1| DNA polymerase I [Corynebacterium diphtheriae HC03]
gi|372114996|gb|AEX81054.1| DNA polymerase I [Corynebacterium diphtheriae HC04]
gi|372119553|gb|AEX83287.1| DNA polymerase I [Corynebacterium diphtheriae VA01]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|376293164|ref|YP_005164838.1| DNA polymerase I [Corynebacterium diphtheriae HC02]
gi|372110487|gb|AEX76547.1| DNA polymerase I [Corynebacterium diphtheriae HC02]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|376242737|ref|YP_005133589.1| DNA polymerase I [Corynebacterium diphtheriae CDCE 8392]
gi|372105979|gb|AEX72041.1| DNA polymerase I [Corynebacterium diphtheriae CDCE 8392]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|376290346|ref|YP_005162593.1| DNA polymerase I [Corynebacterium diphtheriae C7 (beta)]
gi|372103742|gb|AEX67339.1| DNA polymerase I [Corynebacterium diphtheriae C7 (beta)]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|375292999|ref|YP_005127538.1| DNA polymerase I [Corynebacterium diphtheriae INCA 402]
gi|371582670|gb|AEX46336.1| DNA polymerase I [Corynebacterium diphtheriae INCA 402]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|375290804|ref|YP_005125344.1| DNA polymerase I [Corynebacterium diphtheriae 241]
gi|376245635|ref|YP_005135874.1| DNA polymerase I [Corynebacterium diphtheriae HC01]
gi|371580475|gb|AEX44142.1| DNA polymerase I [Corynebacterium diphtheriae 241]
gi|372108265|gb|AEX74326.1| DNA polymerase I [Corynebacterium diphtheriae HC01]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|376284648|ref|YP_005157858.1| DNA polymerase I [Corynebacterium diphtheriae 31A]
gi|371578163|gb|AEX41831.1| DNA polymerase I [Corynebacterium diphtheriae 31A]
Length = 899
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVA 167
R+MLIDG S+ +RA+Y + A+ + + G ++ LS++ +L E P+HVA
Sbjct: 17 RLMLIDGHSMAFRAFYALPAE------NFSTSGGQATNAVYGFLSMLSSLLVEEKPTHVA 70
Query: 168 VCF 170
V F
Sbjct: 71 VAF 73
>gi|94490330|gb|ABF29402.1| nonribosomal peptide synthetase [Xylaria sp. BCC 1067]
Length = 6744
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 48 SSQSTKGSCCLSINLSTNVRGVGRANF-----HSIVTSISDQTLSVEALDPVKFEESAVN 102
+ Q T GS L+++L+ G G F HS+ S L +AL+ + +E ++
Sbjct: 1872 AQQMTLGSPLLNLSLAPMADGTGSYQFLLTIHHSLYDGWSLPLLWRQALNAYRGQE--IS 1929
Query: 103 PKPSNG---RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGN 141
P+P N +M +DGT ++A K L L H D N
Sbjct: 1930 PQPFNRFIHHIMQVDGTEDFWKAQMKDLNAAQFPPLPHVDYN 1971
>gi|223043247|ref|ZP_03613294.1| DNA polymerase I (POL I) [Staphylococcus capitis SK14]
gi|417907876|ref|ZP_12551643.1| 5'-3' exonuclease [Staphylococcus capitis VCU116]
gi|222443458|gb|EEE49556.1| DNA polymerase I (POL I) [Staphylococcus capitis SK14]
gi|341594963|gb|EGS37641.1| 5'-3' exonuclease [Staphylococcus capitis VCU116]
Length = 292
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGVQGFVRHIFSAIK------EINP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|420199385|ref|ZP_14705063.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM031]
gi|394272167|gb|EJE16636.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM031]
Length = 292
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
Length = 971
Score = 36.6 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 103 PKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EF 161
P P R++L+DG S+ YRA++ + + + + G ++ S++I+ L +
Sbjct: 74 PTPGVPRLLLLDGNSLAYRAFFALPVE------NFSTTTGQPTNAVYGFTSMLINALRDE 127
Query: 162 IPSHVAVCFSCPS 174
P+HVAV + P+
Sbjct: 128 QPTHVAVAWDLPA 140
>gi|242373751|ref|ZP_04819325.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W1]
gi|242348488|gb|EES40090.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W1]
Length = 292
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGVQGFVRHIFSAIK------EINP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|417912252|ref|ZP_12555947.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus epidermidis
VCU105]
gi|418621815|ref|ZP_13184580.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU123]
gi|420187348|ref|ZP_14693369.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM039]
gi|341651263|gb|EGS75068.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus epidermidis
VCU105]
gi|374828243|gb|EHR92082.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU123]
gi|394256327|gb|EJE01260.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM039]
Length = 292
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|385784405|ref|YP_005760578.1| putative 5'-3' exonuclease [Staphylococcus lugdunensis N920143]
gi|418414079|ref|ZP_12987295.1| hypothetical protein HMPREF9308_00460 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|339894661|emb|CCB53946.1| putative 5'-3' exonuclease [Staphylococcus lugdunensis N920143]
gi|410877717|gb|EKS25609.1| hypothetical protein HMPREF9308_00460 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 293
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ + P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGVQGFVRHIFSAIH------DIAP 55
Query: 164 SHVAVCFS 171
SHVAVC+
Sbjct: 56 SHVAVCWD 63
>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
49030]
gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
49030]
Length = 867
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEF-IPSHVAV 168
++LIDG S YRAY+ + A+ + + G ++ LS+++ VLE P HVAV
Sbjct: 6 LLLIDGHSFAYRAYFALPAE------NFSTSTGQTTNAVYGFLSMLLTVLENEKPDHVAV 59
Query: 169 CF 170
F
Sbjct: 60 AF 61
>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
Length = 888
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSH 165
N ++LIDG S+ YRA++ + + + + G I+ +S++I+VL + PSH
Sbjct: 5 NESLLLIDGHSLAYRAFHALPVE------NFSTSTGQSTNAIYGFISMLINVLRDESPSH 58
Query: 166 VAVCF 170
VAV F
Sbjct: 59 VAVAF 63
>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
Length = 856
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 96 FEESAVNPKPSNGRVMLIDGTSIIYRAYYKILA-KLHHGHLSHADGNGDWVLTIFSALSL 154
F+E+ K S ++++IDG+S+IYR YY + K +G L++A ++ + +
Sbjct: 10 FQENT--EKESKRKILIIDGSSLIYRVYYALPPLKTKNGELTNA---------LYGFIRI 58
Query: 155 IIDVLE-FIPSHVAVCFSCP 173
++ +E F P V V F P
Sbjct: 59 LLKAVEDFNPDLVGVAFDRP 78
>gi|289550777|ref|YP_003471681.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
gi|315658273|ref|ZP_07911145.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
gi|418635223|ref|ZP_13197606.1| 5'-3' exonuclease [Staphylococcus lugdunensis VCU139]
gi|289180309|gb|ADC87554.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
gi|315496602|gb|EFU84925.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
gi|374842105|gb|EHS05553.1| 5'-3' exonuclease [Staphylococcus lugdunensis VCU139]
Length = 293
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ + P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGVQGFVRHIFSAIH------DIAP 55
Query: 164 SHVAVCFS 171
SHVAVC+
Sbjct: 56 SHVAVCWD 63
>gi|416125198|ref|ZP_11595796.1| DNA polymerase I domain protein [Staphylococcus epidermidis FRI909]
gi|418329757|ref|ZP_12940808.1| 5'-3' exonuclease [Staphylococcus epidermidis 14.1.R1.SE]
gi|418625137|ref|ZP_13187795.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU125]
gi|418630464|ref|ZP_13192945.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU128]
gi|420192199|ref|ZP_14698059.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM023]
gi|319400795|gb|EFV89014.1| DNA polymerase I domain protein [Staphylococcus epidermidis FRI909]
gi|365229755|gb|EHM70888.1| 5'-3' exonuclease [Staphylococcus epidermidis 14.1.R1.SE]
gi|374826025|gb|EHR89941.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU125]
gi|374837654|gb|EHS01217.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU128]
gi|394261410|gb|EJE06207.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM023]
Length = 292
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|27468048|ref|NP_764685.1| 5'-3' exonuclease [Staphylococcus epidermidis ATCC 12228]
gi|57866934|ref|YP_188589.1| 5'-3' exonuclease [Staphylococcus epidermidis RP62A]
gi|251810870|ref|ZP_04825343.1| 5'-3' exonuclease [Staphylococcus epidermidis BCM-HMP0060]
gi|282876124|ref|ZP_06284991.1| 5'-3' exonuclease, SAM C-terminal domain protein [Staphylococcus
epidermidis SK135]
gi|293366589|ref|ZP_06613266.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W2(grey)]
gi|417645637|ref|ZP_12295533.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU144]
gi|417656030|ref|ZP_12305721.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU028]
gi|417659577|ref|ZP_12309177.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU045]
gi|417908745|ref|ZP_12552502.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus epidermidis
VCU037]
gi|417913772|ref|ZP_12557435.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus epidermidis
VCU109]
gi|418605647|ref|ZP_13168960.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU041]
gi|418606623|ref|ZP_13169893.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU057]
gi|418609685|ref|ZP_13172821.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU065]
gi|418613258|ref|ZP_13176272.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU117]
gi|418616303|ref|ZP_13179228.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU120]
gi|418627779|ref|ZP_13190349.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU126]
gi|418629143|ref|ZP_13191657.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU127]
gi|418664544|ref|ZP_13226012.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU081]
gi|419769365|ref|ZP_14295459.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus IS-250]
gi|419771782|ref|ZP_14297828.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus IS-K]
gi|420165447|ref|ZP_14672138.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM088]
gi|420170162|ref|ZP_14676723.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM070]
gi|420172501|ref|ZP_14679000.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM067]
gi|420183112|ref|ZP_14689245.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM049]
gi|420194747|ref|ZP_14700544.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM021]
gi|420197329|ref|ZP_14703053.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM020]
gi|420201578|ref|ZP_14707188.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM018]
gi|420208954|ref|ZP_14714392.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM003]
gi|420211685|ref|ZP_14717043.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM001]
gi|420213909|ref|ZP_14719189.1| 5'-3' exonuclease [Staphylococcus epidermidis NIH05005]
gi|420217885|ref|ZP_14723015.1| 5'-3' exonuclease [Staphylococcus epidermidis NIH05001]
gi|420220800|ref|ZP_14725757.1| 5'-3' exonuclease [Staphylococcus epidermidis NIH04008]
gi|420221767|ref|ZP_14726693.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH08001]
gi|420225645|ref|ZP_14730472.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH06004]
gi|420227233|ref|ZP_14732005.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH05003]
gi|420229552|ref|ZP_14734258.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH04003]
gi|420231967|ref|ZP_14736609.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH051668]
gi|420234611|ref|ZP_14739171.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH051475]
gi|421607058|ref|ZP_16048308.1| 5'-3' exonuclease [Staphylococcus epidermidis AU12-03]
gi|27315593|gb|AAO04727.1|AE016747_224 putative 5'-3' exonuclease [Staphylococcus epidermidis ATCC 12228]
gi|57637592|gb|AAW54380.1| 5'-3' exonuclease, putative [Staphylococcus epidermidis RP62A]
gi|251805550|gb|EES58207.1| 5'-3' exonuclease [Staphylococcus epidermidis BCM-HMP0060]
gi|281295149|gb|EFA87676.1| 5'-3' exonuclease, SAM C-terminal domain protein [Staphylococcus
epidermidis SK135]
gi|291319358|gb|EFE59727.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W2(grey)]
gi|329731550|gb|EGG67912.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU144]
gi|329735214|gb|EGG71506.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU045]
gi|329737280|gb|EGG73534.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU028]
gi|341654794|gb|EGS78532.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus epidermidis
VCU109]
gi|341656106|gb|EGS79829.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus epidermidis
VCU037]
gi|374401656|gb|EHQ72716.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU041]
gi|374406624|gb|EHQ77516.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU065]
gi|374407399|gb|EHQ78261.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU057]
gi|374410354|gb|EHQ81112.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU081]
gi|374816193|gb|EHR80400.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU117]
gi|374821129|gb|EHR85196.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU120]
gi|374828926|gb|EHR92749.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU126]
gi|374834574|gb|EHR98213.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU127]
gi|383357984|gb|EID35445.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus IS-250]
gi|383360601|gb|EID37996.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus IS-K]
gi|394235248|gb|EJD80820.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM088]
gi|394240500|gb|EJD85923.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM070]
gi|394241662|gb|EJD87071.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM067]
gi|394249575|gb|EJD94788.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM049]
gi|394263807|gb|EJE08528.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM021]
gi|394266136|gb|EJE10782.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM020]
gi|394271846|gb|EJE16325.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM018]
gi|394279182|gb|EJE23490.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM003]
gi|394280639|gb|EJE24914.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM001]
gi|394283831|gb|EJE27992.1| 5'-3' exonuclease [Staphylococcus epidermidis NIH05005]
gi|394285688|gb|EJE29761.1| 5'-3' exonuclease [Staphylococcus epidermidis NIH04008]
gi|394286327|gb|EJE30338.1| 5'-3' exonuclease [Staphylococcus epidermidis NIH05001]
gi|394290178|gb|EJE34045.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH08001]
gi|394293079|gb|EJE36802.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH06004]
gi|394297323|gb|EJE40924.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH05003]
gi|394299318|gb|EJE42869.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH04003]
gi|394301689|gb|EJE45143.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH051668]
gi|394303854|gb|EJE47264.1| 5'-3' exonuclease with SAM domain [Staphylococcus epidermidis
NIH051475]
gi|406657351|gb|EKC83740.1| 5'-3' exonuclease [Staphylococcus epidermidis AU12-03]
Length = 292
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|418633094|ref|ZP_13195511.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU129]
gi|420190065|ref|ZP_14696009.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM037]
gi|420204366|ref|ZP_14709924.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM015]
gi|374839913|gb|EHS03420.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU129]
gi|394258956|gb|EJE03826.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM037]
gi|394273376|gb|EJE17807.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM015]
Length = 292
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|242242723|ref|ZP_04797168.1| 5'-3' exonuclease [Staphylococcus epidermidis W23144]
gi|418614765|ref|ZP_13177727.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU118]
gi|420174787|ref|ZP_14681235.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM061]
gi|420178148|ref|ZP_14684481.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM057]
gi|420179810|ref|ZP_14686087.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM053]
gi|242233859|gb|EES36171.1| 5'-3' exonuclease [Staphylococcus epidermidis W23144]
gi|374819301|gb|EHR83429.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU118]
gi|394244691|gb|EJD90026.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM061]
gi|394246774|gb|EJD92026.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM057]
gi|394252405|gb|EJD97440.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM053]
Length = 292
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|420206233|ref|ZP_14711743.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM008]
gi|394278072|gb|EJE22389.1| 5'-3' exonuclease [Staphylococcus epidermidis NIHLM008]
Length = 292
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADG---NG--DWVLTIFSALSLIIDVLEFIP 163
RV+L+DG ++++R +Y LH+ + ++ G NG +V IFSA+ E P
Sbjct: 4 RVLLVDGMALLFRHFYA--TSLHNQFMYNSKGIPTNGIQGFVRHIFSAIK------EIEP 55
Query: 164 SHVAVCFS 171
+HVAVC+
Sbjct: 56 THVAVCWD 63
>gi|342217544|ref|ZP_08710186.1| DNA-directed DNA polymerase [Megasphaera sp. UPII 135-E]
gi|341593891|gb|EGS36709.1| DNA-directed DNA polymerase [Megasphaera sp. UPII 135-E]
Length = 856
Score = 36.2 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFI-PSHVA 167
++++IDG+S++YRA+Y I D G++ ++ L++++ + E + P++VA
Sbjct: 4 KLVIIDGSSLLYRAFYAIPML--------TDSRGNYTNAVYGFLNMLLKLYEELQPNYVA 55
Query: 168 VCF 170
V F
Sbjct: 56 VAF 58
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,642,252,378
Number of Sequences: 23463169
Number of extensions: 95429929
Number of successful extensions: 274057
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 273991
Number of HSP's gapped (non-prelim): 112
length of query: 183
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 50
effective length of database: 9,238,593,890
effective search space: 461929694500
effective search space used: 461929694500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 72 (32.3 bits)