BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030072
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4IGJ|A Chain A, Crystal Structure Of Maleylacetoacetate Isomerase From
          Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
 pdb|4IGJ|B Chain B, Crystal Structure Of Maleylacetoacetate Isomerase From
          Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
          Length = 242

 Score = 28.5 bits (62), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 3  YQQSLNLRIHSFWRSLNCFRKKFS 26
          Y QS+ LR++S+WRS + +R +  
Sbjct: 19 YFQSMTLRLYSYWRSSSAWRVRLG 42


>pdb|2HI7|B Chain B, Crystal Structure Of Dsba-Dsbb-Ubiquinone Complex
 pdb|2ZUP|B Chain B, Updated Crystal Structure Of Dsbb-Dsba Complex From E.
           Coli
 pdb|2LEG|B Chain B, Membrane Protein Complex Dsbb-Dsba Structure By Joint
           Calculations With Solid-State Nmr And X-Ray Experimental
           Data
          Length = 176

 Score = 27.7 bits (60), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 138 ADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCFSCPSCM 176
           + G G W+L  F+AL+L +  L F   HV +   C  C+
Sbjct: 9   SQGRGAWLLMAFTALALELTALWF--QHVMLLKPCVLCI 45


>pdb|3E9J|C Chain C, Structure Of The Charge-Transfer Intermediate Of The
           Transmembrane Redox Catalyst Dsbb
 pdb|3E9J|F Chain F, Structure Of The Charge-Transfer Intermediate Of The
           Transmembrane Redox Catalyst Dsbb
          Length = 182

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 138 ADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCFSCPSCM 176
           + G G W+L  F+AL+L +  L F   HV +   C  C+
Sbjct: 9   SQGRGAWLLMAFTALALELTALWF--QHVMLLKPCVLCI 45


>pdb|2YK0|A Chain A, Structure Of The N-Terminal Nts-Dbl1-Alpha And Cidr-Gamma
           Double Domain Of The Pfemp1 Protein From Plasmodium
           Falciparum Varo Strain
          Length = 790

 Score = 26.9 bits (58), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 115 GTSIIYRAYYKILAKLHHGHLSHADGNGDW 144
           G  ++++  YK L      H +H DG+G++
Sbjct: 223 GLQVVFKKIYKSLTPEARKHYAHGDGSGNY 252


>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
           Adhesin
          Length = 1011

 Score = 26.9 bits (58), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 54  GSCCLSINLSTNVRGVGRANFHSIVTSISDQTLSVEA--LDPVKFEESA---VNPKPSNG 108
           GS  L+ N + NV+G+ + N +  +T+ S  TLS  A  +  ++  +++   V+    NG
Sbjct: 705 GSINLTDNATANVKGLAKLNGNVTLTNHSQFTLSNNATQIGNIRLSDNSTATVDNANLNG 764

Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSH 137
            V L D               L + H SH
Sbjct: 765 NVHLTDSAQF----------SLKNSHFSH 783


>pdb|2XU0|A Chain A, Crystal Structure Of The Nts-Dbl1(Alpha-1) Domain Of The
           Plasmodium Falciparum Membrane Protein 1 (Pfemp1) From
           The Varo Strain
          Length = 487

 Score = 26.2 bits (56), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 115 GTSIIYRAYYKILAKLHHGHLSHADGNGDWV 145
           G  ++++  YK L      H +H DG+G++ 
Sbjct: 220 GLQVVFKKIYKSLTPEARKHYAHGDGSGNYA 250


>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
          Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
          Pqpyeeipi Peptide
          Length = 103

 Score = 26.2 bits (56), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 46 LSSSQSTKGSCCLSINLSTNVRGVGRANF 74
          +  S++TKG+ CLS++   N +G+  A++
Sbjct: 30 VRESETTKGAYCLSVSAFANAKGLNVAHY 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,154,296
Number of Sequences: 62578
Number of extensions: 184920
Number of successful extensions: 508
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)