BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030072
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum
GN=nup98 PE=3 SV=1
Length = 2053
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 103 PKPSNGRVMLIDGTSI--IYRAYYKILAKLHHGHLSHADGNGDWVLTI 148
PK NG V+ DGT + A K+ AK G +S++ NG WV T+
Sbjct: 1114 PKNKNGEVVKEDGTILDKYENALKKVSAKSDCGFVSYSRSNGTWVFTV 1161
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFI-PSHVA 167
R++LIDG+S+ +RA++ + +L NG IF+ +++ ++E I P+HV
Sbjct: 6 RLLLIDGSSVAFRAFFALYNQLDR----FKAPNGLHTNAIFAFHTMLSSLMERIQPTHVL 61
Query: 168 VCF 170
+ F
Sbjct: 62 IAF 64
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=polA PE=3 SV=1
Length = 877
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 109 RVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFI-PSHVA 167
R++LIDG+S+ +RA++ + ++ NG IF+ +++ ++E I P+HV
Sbjct: 6 RLLLIDGSSVAFRAFFALYNQIDR----FKAPNGLHTNAIFAFHTMLSSLMERIEPTHVL 61
Query: 168 VCF 170
+ F
Sbjct: 62 IAF 64
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVAV 168
++LIDG ++RAYY S + G+ V ++ S+++ +L +F P +VA+
Sbjct: 7 LLLIDGYGFVFRAYY--------AQKSLSSAKGEPVGALYGFTSMLLKLLSDFKPQYVAI 58
Query: 169 CF 170
F
Sbjct: 59 VF 60
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVAV 168
++LIDG ++RAYY G+ V ++ S+++ +L +F P HVAV
Sbjct: 7 LLLIDGYGFVFRAYY--------AQQPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHVAV 58
Query: 169 CF 170
F
Sbjct: 59 VF 60
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVAV 168
++LIDG ++RAYY G+ V ++ S+++ +L +F P HVAV
Sbjct: 7 LLLIDGYGFVFRAYY--------AQQPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHVAV 58
Query: 169 CF 170
F
Sbjct: 59 VF 60
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 110 VMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL-EFIPSHVAV 168
++LIDG ++RAYY G+ V ++ S+++ +L +F P HVAV
Sbjct: 7 LLLIDGYGFVFRAYY--------AQQPLTSPKGEPVGALYGFASMLLKLLSDFKPKHVAV 58
Query: 169 CF 170
F
Sbjct: 59 VF 60
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 100 AVNPKPSNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVL 159
A NP ++L+DG+S +YRA+ H S + G+ ++ L+++ ++
Sbjct: 5 ATNP------LVLVDGSSYLYRAF--------HAFPSLTNAAGEPTSAMYGVLNMLKSLI 50
Query: 160 EFI-PSHVAVCF 170
+ P+H+AV F
Sbjct: 51 SQVQPTHIAVVF 62
>sp|Q85X62|RPOC2_PINKO DNA-directed RNA polymerase subunit beta'' OS=Pinus koraiensis
GN=rpoC2 PE=3 SV=1
Length = 1209
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 86 LSVEALDPVKFEESAVNPKPSNGRVMLIDGTSIIYRAYYKILAKLH---HGHLSHADGNG 142
+S+ L P S P P +G+++ +D S++ R+ LA HGH G
Sbjct: 893 VSLGQLIPESVWISEDEPLPESGQIIAVDEESLVIRSAKPYLATRKATVHGHYGEILDKG 952
Query: 143 DWVLTIFSALSLIIDVLEFIP 163
D ++T+ D+++ +P
Sbjct: 953 DTLITLIYERLKSSDIIQGLP 973
>sp|Q6GQW0|BTBDB_MOUSE Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 OS=Mus
musculus GN=Btbd11 PE=2 SV=2
Length = 1109
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/73 (19%), Positives = 33/73 (45%)
Query: 19 NCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSINLSTNVRGVGRANFHSIV 78
N FRK ++P++ + + +++ +++ C S N +R + A +HS
Sbjct: 750 NVFRKLLAQPEKEKSDILSLEEILAEGTDLAETAPPPLCASRNSKAKLRALREAMYHSAE 809
Query: 79 TSISDQTLSVEAL 91
D T+ + ++
Sbjct: 810 HGYVDVTIDIRSI 822
>sp|A6QL63|BTBDB_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 OS=Homo
sapiens GN=BTBD11 PE=2 SV=3
Length = 1104
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/73 (19%), Positives = 33/73 (45%)
Query: 19 NCFRKKFSKPQRTGNTLFNIKRFDLARLSSSQSTKGSCCLSINLSTNVRGVGRANFHSIV 78
N FRK ++P++ + + +++ +++ C S N +R + A +HS
Sbjct: 745 NVFRKLLAQPEKEKSDILSLEEILAEGTDLAETAPPPLCASRNSKAKLRALREAMYHSAE 804
Query: 79 TSISDQTLSVEAL 91
D T+ + ++
Sbjct: 805 HGYVDVTIDIRSI 817
>sp|Q89AD1|EX53_BUCBP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=pol PE=3 SV=1
Length = 302
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 106 SNGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIP-S 164
N +LIDGTS +YRAYY L + + G I+ L+++ +L P S
Sbjct: 6 KNVNYLLIDGTSYLYRAYYAFLK--FKNNFNKPCG------AIYGMLNMLRSMLLKYPYS 57
Query: 165 HVAVCFSCPS 174
++ V F P
Sbjct: 58 NIVVIFDSPQ 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,712,468
Number of Sequences: 539616
Number of extensions: 2266013
Number of successful extensions: 6130
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6125
Number of HSP's gapped (non-prelim): 16
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)