Query 030072
Match_columns 183
No_of_seqs 153 out of 1091
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7i_A Ribonuclease H, RNAse H 99.4 4E-13 1.4E-17 118.3 5.5 57 107-173 12-73 (305)
2 1exn_A 5'-exonuclease, 5'-nucl 99.2 4.4E-12 1.5E-16 110.2 4.0 53 107-175 18-71 (290)
3 1bgx_T TAQ DNA polymerase; DNA 99.2 3.4E-12 1.2E-16 123.4 0.5 60 107-175 11-71 (832)
4 3q8k_A Flap endonuclease 1; he 99.1 2E-11 7E-16 107.1 4.2 63 107-176 26-90 (341)
5 1rxw_A Flap structure-specific 99.1 5.3E-11 1.8E-15 103.0 5.3 62 108-175 21-84 (336)
6 1b43_A Protein (FEN-1); nuclea 99.1 1.1E-10 3.9E-15 101.1 6.9 64 108-175 21-84 (340)
7 2izo_A FEN1, flap structure-sp 99.0 1.5E-10 5.1E-15 100.9 4.8 62 108-175 18-81 (346)
8 1a76_A Flap endonuclease-1 pro 99.0 2.1E-10 7E-15 98.9 5.2 62 108-175 21-84 (326)
9 3ory_A Flap endonuclease 1; hy 98.9 6.6E-10 2.3E-14 98.5 5.2 64 107-176 34-99 (363)
10 1ul1_X Flap endonuclease-1; pr 98.9 6.8E-10 2.3E-14 98.1 3.9 61 108-175 27-89 (379)
11 3qe9_Y Exonuclease 1; exonucle 97.3 0.00023 8E-09 62.6 5.1 59 108-175 24-82 (352)
No 1
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.36 E-value=4e-13 Score=118.33 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=50.7
Q ss_pred CCcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHH-HHHHHHHHHhh----CCCEEEEEEeCC
Q 030072 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFS-ALSLIIDVLEF----IPSHVAVCFSCP 173 (183)
Q Consensus 107 ~~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyG-Fl~mLlkLLk~----~PthIaVaFDs~ 173 (183)
+++++||||++|+||||++. + .+.+|.|||||+| |++||+++++. +|+|++||||.+
T Consensus 12 ~~~llLIDgssl~~ra~~~~--------f--~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~ 73 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTALVN--------F--PDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNA 73 (305)
T ss_dssp SCCEEEEEHHHHHHHHHHHH--------S--CSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCEEEEeccHHHHHHHHHh--------c--CCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCC
Confidence 45799999999999998642 4 7889999999987 99999999984 999999999976
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.22 E-value=4.4e-12 Score=110.16 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=46.6
Q ss_pred CCcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh-hCCCEEEEEEeCCCc
Q 030072 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE-FIPSHVAVCFSCPSC 175 (183)
Q Consensus 107 ~~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk-~~PthIaVaFDs~gk 175 (183)
+++++||||++++||+||. ++|.| |++||++|++++++ ++|+|++||||.+++
T Consensus 18 ~~~lllIDg~~llyRa~~~--------------~~G~p--av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~ 71 (290)
T 1exn_A 18 RRNLMIVDGTNLGFRFKHN--------------NSKKP--FASSYVSTIQSLAKSYSARTTIVLGDKGKS 71 (290)
T ss_dssp -CEEEEEEHHHHHHHHHHH--------------CSSSC--CHHHHHHHHHHHHHHTTEEEEEEECCBSCC
T ss_pred CCCEEEEECcHHHHHHHhC--------------CCCch--HHHHHHHHHHHHHHHcCCCeEEEEEcCCCc
Confidence 4579999999999999982 24778 99999999999999 999999999997654
No 3
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.16 E-value=3.4e-12 Score=123.37 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=54.8
Q ss_pred CCcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh-hCCCEEEEEEeCCCc
Q 030072 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE-FIPSHVAVCFSCPSC 175 (183)
Q Consensus 107 ~~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk-~~PthIaVaFDs~gk 175 (183)
+++++||||++++||+|||.+ ++ .+++|.|||||+||++++.++++ ++ +|++||||.+++
T Consensus 11 ~~~~llIDg~~~l~ra~~a~~------~l--~~~~G~~t~av~gf~~~l~~ll~~~~-~~~v~vFDg~~~ 71 (832)
T 1bgx_T 11 KGRVLLVDGHHLAYRTFHALK------GL--TTSRGEPVQAVYGFAKSLLKALKEDG-DAVIVVFDAKAP 71 (832)
T ss_dssp CTTSCCCCCSTHHHHTTSSCT------TC--BCSSSCBCSSSTTHHHHHHHGGGTCC-SCCCCCCCCSSS
T ss_pred CCCEEEEEChHHHHHHHhcCC------cc--ccCCCcEehHHHHHHHHHHHHHHHcC-CeEEEEEcCCCc
Confidence 446999999999999999997 56 89999999999999999999999 77 999999997654
No 4
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.14 E-value=2e-11 Score=107.07 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=53.1
Q ss_pred CCcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh--hCCCEEEEEEeCCCcc
Q 030072 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE--FIPSHVAVCFSCPSCM 176 (183)
Q Consensus 107 ~~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk--~~PthIaVaFDs~gk~ 176 (183)
.+++++|||++++||+|||.+.. +.++ .+++|.||+||+||+++++++++ .+|.| |||.++++
T Consensus 26 ~gk~l~IDgs~~lyr~~~a~~~~--~~~l--~~~~G~~T~al~g~~~~~~~ll~~~i~P~~---VFDg~~~~ 90 (341)
T 3q8k_A 26 FGRKVAIDASMSIYQFLIAVRQG--GDVL--QNEEGETTSHLMGMFYRTIRMMENGIKPVY---VFDGKPPQ 90 (341)
T ss_dssp TTCEEEEEHHHHHHHHHHHCEET--TEEC--BCTTSCBCHHHHHHHHHHHHHHTTTCEEEE---EECCCCCG
T ss_pred CCCEEEEecHHHHHHHHHccccc--cCCC--CCCCCCCchHHHHHHHHHHHHHHCCCCceE---EEeCCCcc
Confidence 34699999999999999998731 1146 89999999999999999999998 77877 69988654
No 5
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.10 E-value=5.3e-11 Score=103.00 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=51.9
Q ss_pred CcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh-h-CCCEEEEEEeCCCc
Q 030072 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE-F-IPSHVAVCFSCPSC 175 (183)
Q Consensus 108 ~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk-~-~PthIaVaFDs~gk 175 (183)
+++++|||++++||+||+.+.. .+.++ .+++|.||+|++||+++++++++ . +| +||||.+++
T Consensus 21 ~~~l~IDg~~~l~r~~~a~~~~-~~~~l--~~~~G~~t~a~~g~~~~l~~ll~~~i~P---v~vFDg~~~ 84 (336)
T 1rxw_A 21 GKKIAVDAFNTLYQFISIIRQP-DGTPL--KDSQGRITSHLSGILYRVSNMVEVGIRP---VFVFDGEPP 84 (336)
T ss_dssp TCEEEEEHHHHHHHHHHHSBCT-TSCBC--BCTTSCBCHHHHHHHHHHHHHHHHTCEE---EEEECCSCC
T ss_pred CCEEEEEhHHHHHHHHHhhccc-cCCcc--cccCCCccHHHHHHHHHHHHHHHCCCEE---EEEEcCCCC
Confidence 3699999999999999998521 11135 89999999999999999999999 4 77 999997765
No 6
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.09 E-value=1.1e-10 Score=101.08 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=54.2
Q ss_pred CcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHhhCCCEEEEEEeCCCc
Q 030072 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCFSCPSC 175 (183)
Q Consensus 108 ~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk~~PthIaVaFDs~gk 175 (183)
+++++|||++++||+|||.+.. .+.++ .+++|.||++++||+++++++++ .|.+.+||||.+.+
T Consensus 21 g~~l~ID~~~~l~r~~~a~~~~-~~~~l--~~~~G~~t~~l~g~~~~l~~ll~-~~i~pv~VFDG~~~ 84 (340)
T 1b43_A 21 GKKIAIDALNAIYQFLSTIRQK-DGTPL--MDSKGRITSHLSGLFYRTINLME-AGIKPVYVFDGEPP 84 (340)
T ss_dssp TCEEEEEHHHHHHHHHHHSBCT-TSCBC--BCTTSCBCHHHHHHHHHHHHHHH-TTCEEEEEECCSCC
T ss_pred CCEEEEEhHHHHHHHHHHhccc-cCCcc--ccccCCchHHHHHHHHHHHHHHh-CCCEEEEEecCCCc
Confidence 4699999999999999998521 11245 89999999999999999999987 78999999997654
No 7
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.03 E-value=1.5e-10 Score=100.89 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=49.6
Q ss_pred CcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh--hCCCEEEEEEeCCCc
Q 030072 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE--FIPSHVAVCFSCPSC 175 (183)
Q Consensus 108 ~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk--~~PthIaVaFDs~gk 175 (183)
+++++|||++++||+|||.+.. .+.++ .+++|.||++++||+++++++++ .+| +||||.+.+
T Consensus 18 ~~~l~IDg~~~l~r~~~a~~~~-~g~~l--~~~~G~~t~al~g~~~~~~~ll~~~i~P---v~vFDG~~~ 81 (346)
T 2izo_A 18 GKRVSIDGYNALYQFLAAIRQP-DGTPL--MDSQGRVTSHLSGLFYRTINILEEGVIP---IYVFDGKPP 81 (346)
T ss_dssp TEEEEEEHHHHHHHHHHSCCCC----CC--BCSSSCBCHHHHHHHHHHHHHHHHTEEE---EEEECC---
T ss_pred CCEEEEEhHHHHHHHHHhcccc-ccccc--cccCCCccHHHHHHHHHHHHHHHCCCcE---EEEECCCCc
Confidence 4699999999999999998621 11145 89999999999999999999998 667 899997654
No 8
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.02 E-value=2.1e-10 Score=98.95 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=51.0
Q ss_pred CcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh--hCCCEEEEEEeCCCc
Q 030072 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE--FIPSHVAVCFSCPSC 175 (183)
Q Consensus 108 ~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk--~~PthIaVaFDs~gk 175 (183)
+++++|||++++||+|||.+.. .+.++ .+++|.||++++||+.++++++. .+| +||||.+.+
T Consensus 21 ~~~l~IDg~~~l~r~~~a~~~~-~~~~l--~~~~G~~t~~l~g~~~~l~~ll~~~i~P---v~vFDG~~~ 84 (326)
T 1a76_A 21 GKKVAIDGMNALYQFLTSIRLR-DGSPL--RNRKGEITSAYNGVFYKTIHLLENDITP---IWVFDGEPP 84 (326)
T ss_dssp TCEEEEEHHHHHHHHHHHSBCT-TSCBC--BCTTSCBCHHHHHHHHHHHHHHHTTCEE---EEEECCCSS
T ss_pred CCEEEEEhHHHHHHHHHhhccc-ccccc--ccccCCccHHHHHHHHHHHHHHHCCCeE---EEEEeCcCc
Confidence 4699999999999999998621 01135 89999999999999999999955 667 899997654
No 9
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=98.93 E-value=6.6e-10 Score=98.48 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=50.6
Q ss_pred CCcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh--hCCCEEEEEEeCCCcc
Q 030072 107 NGRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE--FIPSHVAVCFSCPSCM 176 (183)
Q Consensus 107 ~~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk--~~PthIaVaFDs~gk~ 176 (183)
.+++++|||++++||+|++.+.. .+.+| .+++|.||+||+||+.+++++++ .+| ++|||.+.++
T Consensus 34 ~gk~l~IDg~~~l~r~~~~~~~~-~g~~l--~~~~G~~T~al~gf~~r~~~ll~~~i~P---v~VFDg~~p~ 99 (363)
T 3ory_A 34 HGKIIVIDGYNALYQFLAAIRQP-DGTPL--MDNNGRITSHLSGLFYRTINIVEAGIKP---VYVFDGKPPE 99 (363)
T ss_dssp TTCEEEEEHHHHHHHHHHHCBCT-TSCBC--BCTTSCBCHHHHHHHHHHHHHHHTTCEE---EEEECSSCGG
T ss_pred CCCEEEEehHHHHHHHHHhhhcc-CCCcc--CCCCCCCccHHHHHHHHHHHHHHcCCCc---EEEEcCCCcc
Confidence 34799999999999977765421 11246 89999999999999999999887 677 5779987643
No 10
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=98.89 E-value=6.8e-10 Score=98.11 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=43.1
Q ss_pred CcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHh--hCCCEEEEEEeCCCc
Q 030072 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLE--FIPSHVAVCFSCPSC 175 (183)
Q Consensus 108 ~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk--~~PthIaVaFDs~gk 175 (183)
+++++|||++++||+|||.+.. +..+ .+++|.||++|+||+.+++++++ .+|.| |||.+.+
T Consensus 27 g~~l~IDg~~~lyr~~~a~~~~--~~~l--~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~---VFDG~~~ 89 (379)
T 1ul1_X 27 GRKVAIDASMSIYQFLIAVRQG--GDVL--QNEEGETTSHLMGMFYRTIRMMENGIKPVY---VFDGKPP 89 (379)
T ss_dssp TCCEEEEHHHHHHHHHSCC-----------------CCHHHHHHHHHHHHHHHTTCCEEE---EECCSCC
T ss_pred CCEEEEEchHHHHHHHHhCCCc--cccc--CcCCCCCchHHHHHHHHHHHHHHCCCCeEE---EEeCCCc
Confidence 3699999999999999998631 1135 89999999999999999999999 67766 7997654
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=97.29 E-value=0.00023 Score=62.65 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=48.0
Q ss_pred CcEEEEecchHHHhhccccccccccCCCcccCCCCceeehhHHHHHHHHHHHhhCCCEEEEEEeCCCc
Q 030072 108 GRVMLIDGTSIIYRAYYKILAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEFIPSHVAVCFSCPSC 175 (183)
Q Consensus 108 ~kLLLIDGssLlFRAYYA~p~~~~~~~L~~~ns~G~PTnAVyGFl~mLlkLLk~~PthIaVaFDs~gk 175 (183)
++.+.|||++++||++|+... ....|.||+++.||+...++++....-..++|||.+..
T Consensus 24 Gk~vaIDas~wL~~~~~~~~~---------~l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~ 82 (352)
T 3qe9_Y 24 GQVVAVDTYCWLHKGAIACAE---------KLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTL 82 (352)
T ss_dssp TSEEEEETHHHHHHHHHHTHH---------HHHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred CcEEEEecHHHHHHhhhccch---------hhcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCc
Confidence 468999999999999988642 23589999999999999999887233677899998764
Done!