Query 030074
Match_columns 183
No_of_seqs 118 out of 1217
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:06:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0868 Glutathione S-transfer 100.0 1.2E-32 2.7E-37 190.1 14.1 161 20-182 3-164 (217)
2 PRK15113 glutathione S-transfe 100.0 1.2E-30 2.7E-35 193.2 16.1 162 18-182 1-167 (214)
3 PRK09481 sspA stringent starva 100.0 3.7E-30 7.9E-35 190.3 17.4 148 22-182 10-157 (211)
4 PLN02473 glutathione S-transfe 100.0 1.3E-29 2.8E-34 187.7 18.7 158 22-182 2-165 (214)
5 TIGR01262 maiA maleylacetoacet 100.0 6.8E-29 1.5E-33 183.3 17.2 158 24-182 1-161 (210)
6 PRK13972 GSH-dependent disulfi 100.0 3.3E-29 7.2E-34 185.7 13.5 154 23-182 2-162 (215)
7 COG0625 Gst Glutathione S-tran 100.0 1.3E-28 2.9E-33 181.9 16.5 156 23-182 1-161 (211)
8 PLN02395 glutathione S-transfe 100.0 3.8E-28 8.2E-33 179.9 18.1 156 23-182 3-164 (215)
9 PRK11752 putative S-transferas 100.0 3.9E-27 8.5E-32 179.4 19.4 156 21-182 43-208 (264)
10 KOG0406 Glutathione S-transfer 100.0 4.7E-27 1E-31 171.5 16.7 151 21-182 8-160 (231)
11 PRK10357 putative glutathione 100.0 4.2E-27 9.2E-32 172.8 16.3 153 23-182 1-154 (202)
12 PRK10542 glutathionine S-trans 100.0 3.4E-27 7.3E-32 173.1 14.9 151 23-182 1-154 (201)
13 KOG0867 Glutathione S-transfer 99.9 1.2E-26 2.6E-31 172.8 13.8 158 22-182 2-163 (226)
14 PTZ00057 glutathione s-transfe 99.9 5.4E-24 1.2E-28 156.7 17.8 149 22-182 4-155 (205)
15 KOG1695 Glutathione S-transfer 99.9 5.8E-24 1.3E-28 154.3 14.9 154 20-182 1-155 (206)
16 PLN02378 glutathione S-transfe 99.9 1.6E-23 3.5E-28 155.0 14.5 134 28-182 17-150 (213)
17 PRK10387 glutaredoxin 2; Provi 99.9 1.4E-23 2.9E-28 154.9 12.5 149 23-182 1-171 (210)
18 TIGR00862 O-ClC intracellular 99.9 4.2E-22 9.2E-27 148.5 16.0 137 28-182 16-171 (236)
19 PLN02817 glutathione dehydroge 99.9 6.1E-22 1.3E-26 150.5 14.2 132 29-182 71-202 (265)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 8.4E-22 1.8E-26 145.4 12.8 148 24-182 1-170 (209)
21 cd03052 GST_N_GDAP1 GST_N fami 99.8 6.2E-21 1.3E-25 117.7 8.5 73 23-95 1-73 (73)
22 PF13417 GST_N_3: Glutathione 99.8 3.6E-20 7.8E-25 115.0 9.4 74 25-101 1-74 (75)
23 cd03045 GST_N_Delta_Epsilon GS 99.8 4.6E-20 9.9E-25 114.2 8.7 74 23-96 1-74 (74)
24 cd03050 GST_N_Theta GST_N fami 99.8 6.9E-20 1.5E-24 114.0 9.4 76 23-98 1-76 (76)
25 cd03053 GST_N_Phi GST_N family 99.8 9.1E-20 2E-24 113.4 9.2 75 23-97 2-76 (76)
26 cd03048 GST_N_Ure2p_like GST_N 99.8 1.4E-19 3E-24 114.0 9.6 77 22-99 1-80 (81)
27 cd03059 GST_N_SspA GST_N famil 99.8 2.8E-19 6E-24 110.3 9.1 73 23-98 1-73 (73)
28 cd03056 GST_N_4 GST_N family, 99.8 2.4E-19 5.1E-24 110.6 8.6 73 23-95 1-73 (73)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 2E-19 4.4E-24 112.2 7.8 75 22-98 1-77 (77)
30 cd03047 GST_N_2 GST_N family, 99.8 3.1E-19 6.7E-24 110.2 8.5 73 23-95 1-73 (73)
31 cd03058 GST_N_Tau GST_N family 99.8 4E-19 8.7E-24 110.0 9.0 73 23-98 1-74 (74)
32 PF02798 GST_N: Glutathione S- 99.8 5.9E-19 1.3E-23 109.7 9.4 74 23-96 1-76 (76)
33 cd03046 GST_N_GTT1_like GST_N 99.8 7.3E-19 1.6E-23 109.3 9.4 76 23-99 1-76 (76)
34 cd03051 GST_N_GTT2_like GST_N 99.8 4.1E-19 8.9E-24 109.7 8.2 73 23-95 1-74 (74)
35 cd03042 GST_N_Zeta GST_N famil 99.8 5E-19 1.1E-23 109.1 8.5 73 23-95 1-73 (73)
36 KOG4420 Uncharacterized conser 99.8 2E-18 4.4E-23 126.4 12.9 161 22-182 26-239 (325)
37 cd03057 GST_N_Beta GST_N famil 99.8 9.6E-19 2.1E-23 109.1 9.3 76 23-99 1-77 (77)
38 cd03044 GST_N_EF1Bgamma GST_N 99.8 8.7E-19 1.9E-23 108.7 8.5 72 24-96 2-74 (75)
39 cd03061 GST_N_CLIC GST_N famil 99.8 1.1E-18 2.4E-23 111.0 8.8 69 29-100 20-88 (91)
40 cd03076 GST_N_Pi GST_N family, 99.8 6.4E-19 1.4E-23 108.8 7.3 72 23-97 2-73 (73)
41 cd03039 GST_N_Sigma_like GST_N 99.8 1E-18 2.3E-23 107.5 7.0 72 23-96 1-72 (72)
42 cd03060 GST_N_Omega_like GST_N 99.8 2.3E-18 4.9E-23 105.7 8.4 69 23-94 1-70 (71)
43 cd03075 GST_N_Mu GST_N family, 99.8 2.7E-18 5.9E-23 108.2 8.6 76 23-98 1-82 (82)
44 cd03038 GST_N_etherase_LigE GS 99.7 7.7E-18 1.7E-22 106.7 8.3 70 29-99 14-84 (84)
45 cd03049 GST_N_3 GST_N family, 99.7 1.1E-17 2.4E-22 103.2 7.5 70 23-95 1-73 (73)
46 cd03055 GST_N_Omega GST_N fami 99.7 1.8E-17 3.9E-22 106.2 8.7 73 20-95 16-89 (89)
47 cd03037 GST_N_GRX2 GST_N famil 99.7 1.3E-17 2.7E-22 102.4 7.2 70 23-96 1-71 (71)
48 KOG1422 Intracellular Cl- chan 99.7 1.8E-16 3.9E-21 113.0 13.9 137 29-182 19-156 (221)
49 cd03080 GST_N_Metaxin_like GST 99.7 2.8E-17 6.1E-22 101.9 8.4 68 22-99 1-75 (75)
50 cd03077 GST_N_Alpha GST_N fami 99.7 3.4E-17 7.4E-22 102.5 8.8 72 22-99 1-77 (79)
51 PLN02907 glutamate-tRNA ligase 99.7 1.3E-16 2.8E-21 135.2 14.0 117 23-182 3-120 (722)
52 PF13409 GST_N_2: Glutathione 99.7 4.3E-17 9.2E-22 99.7 7.9 68 30-97 1-70 (70)
53 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.1E-16 2.4E-21 99.7 8.5 72 22-98 1-76 (77)
54 cd03043 GST_N_1 GST_N family, 99.7 1.1E-16 2.4E-21 98.6 7.9 68 27-95 6-73 (73)
55 cd00570 GST_N_family Glutathio 99.7 7.6E-16 1.7E-20 93.4 8.2 71 23-95 1-71 (71)
56 cd03054 GST_N_Metaxin GST_N fa 99.6 2.9E-15 6.4E-20 92.0 7.8 64 24-97 2-72 (72)
57 COG2999 GrxB Glutaredoxin 2 [P 99.6 1E-14 2.2E-19 101.4 8.7 138 23-168 1-160 (215)
58 KOG3029 Glutathione S-transfer 99.5 4.9E-13 1.1E-17 99.4 10.3 69 22-96 90-159 (370)
59 cd03079 GST_N_Metaxin2 GST_N f 99.4 9.4E-13 2E-17 80.6 7.3 60 29-97 15-74 (74)
60 KOG4244 Failed axon connection 99.4 2.3E-11 5.1E-16 90.0 14.6 146 22-182 45-233 (281)
61 cd03078 GST_N_Metaxin1_like GS 99.2 9.1E-11 2E-15 72.0 7.9 58 30-97 15-72 (73)
62 TIGR02190 GlrX-dom Glutaredoxi 99.2 7.2E-11 1.6E-15 73.7 7.5 74 19-95 6-79 (79)
63 COG0435 ECM4 Predicted glutath 99.2 2.7E-10 5.9E-15 84.8 11.2 155 17-182 46-235 (324)
64 KOG3027 Mitochondrial outer me 99.2 1.7E-09 3.7E-14 77.4 12.5 139 30-181 33-206 (257)
65 PRK10638 glutaredoxin 3; Provi 99.1 2.3E-10 4.9E-15 72.1 7.0 73 21-95 2-74 (83)
66 cd03029 GRX_hybridPRX5 Glutare 99.0 1.6E-09 3.5E-14 66.3 7.8 71 22-95 2-72 (72)
67 KOG2903 Predicted glutathione 99.0 4.3E-09 9.2E-14 77.9 11.2 155 19-182 34-235 (319)
68 cd03027 GRX_DEP Glutaredoxin ( 98.9 5.6E-09 1.2E-13 64.1 6.5 69 22-92 2-70 (73)
69 TIGR02196 GlrX_YruB Glutaredox 98.8 1.6E-08 3.6E-13 61.5 6.4 71 22-94 1-73 (74)
70 KOG3028 Translocase of outer m 98.8 9.3E-07 2E-11 67.4 16.4 139 30-180 16-191 (313)
71 cd02066 GRX_family Glutaredoxi 98.8 2.5E-08 5.5E-13 60.3 6.7 70 22-93 1-70 (72)
72 cd02976 NrdH NrdH-redoxin (Nrd 98.8 2.1E-08 4.6E-13 60.9 5.8 64 22-87 1-64 (73)
73 PRK10329 glutaredoxin-like pro 98.7 5.8E-08 1.3E-12 60.7 6.4 61 22-85 2-62 (81)
74 COG0695 GrxC Glutaredoxin and 98.7 8.8E-08 1.9E-12 59.8 6.7 72 22-93 2-73 (80)
75 cd03418 GRX_GRXb_1_3_like Glut 98.7 1.1E-07 2.3E-12 58.5 6.6 71 22-94 1-72 (75)
76 TIGR02200 GlrX_actino Glutared 98.6 1.2E-07 2.5E-12 58.5 6.4 71 22-94 1-75 (77)
77 cd03189 GST_C_GTT1_like GST_C 98.6 1.7E-07 3.6E-12 62.8 7.2 75 105-182 2-84 (119)
78 TIGR02181 GRX_bact Glutaredoxi 98.5 3.8E-07 8.3E-12 56.6 6.3 72 23-96 1-72 (79)
79 TIGR02189 GlrX-like_plant Glut 98.5 4.5E-07 9.7E-12 58.9 6.7 76 18-93 5-81 (99)
80 PRK11200 grxA glutaredoxin 1; 98.5 9.1E-07 2E-11 55.8 7.5 76 22-99 2-84 (85)
81 cd03178 GST_C_Ure2p_like GST_C 98.5 6.2E-07 1.3E-11 59.4 6.8 70 111-182 1-70 (113)
82 cd03182 GST_C_GTT2_like GST_C 98.5 8.3E-07 1.8E-11 59.1 6.9 73 108-182 1-79 (117)
83 cd03191 GST_C_Zeta GST_C famil 98.4 1E-06 2.2E-11 59.2 7.0 73 110-182 2-76 (121)
84 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.4E-06 3E-11 54.3 7.1 75 22-96 1-76 (82)
85 cd03181 GST_C_EFB1gamma GST_C 98.4 1.2E-06 2.6E-11 58.9 7.2 70 111-182 1-70 (123)
86 PHA03050 glutaredoxin; Provisi 98.4 1.5E-06 3.2E-11 57.4 7.3 74 19-92 11-88 (108)
87 TIGR02194 GlrX_NrdH Glutaredox 98.4 8.8E-07 1.9E-11 54.1 5.7 57 23-82 1-57 (72)
88 cd03180 GST_C_2 GST_C family, 98.4 1.5E-06 3.2E-11 57.1 7.1 70 111-182 2-73 (110)
89 TIGR02183 GRXA Glutaredoxin, G 98.4 2.5E-06 5.5E-11 53.9 7.5 75 23-99 2-83 (86)
90 PF00462 Glutaredoxin: Glutare 98.4 6.4E-07 1.4E-11 52.6 3.9 60 23-84 1-60 (60)
91 cd03196 GST_C_5 GST_C family, 98.3 1E-06 2.2E-11 58.9 5.2 69 108-182 3-71 (115)
92 cd03186 GST_C_SspA GST_N famil 98.3 1.8E-06 4E-11 56.6 6.1 64 110-182 2-65 (107)
93 cd03200 GST_C_JTV1 GST_C famil 98.3 9.5E-07 2E-11 57.1 4.6 65 91-182 1-65 (96)
94 PF10568 Tom37: Outer mitochon 98.3 5.3E-06 1.2E-10 50.5 7.5 55 30-94 13-71 (72)
95 cd03188 GST_C_Beta GST_C famil 98.3 1.2E-06 2.6E-11 57.9 4.7 70 111-182 2-73 (114)
96 cd03187 GST_C_Phi GST_C family 98.3 3.1E-06 6.6E-11 56.4 6.4 70 111-182 2-75 (118)
97 TIGR00365 monothiol glutaredox 98.3 5.4E-06 1.2E-10 53.7 7.0 75 18-94 9-88 (97)
98 cd03185 GST_C_Tau GST_C family 98.2 3.8E-06 8.3E-11 56.6 6.1 64 110-182 2-65 (126)
99 cd03028 GRX_PICOT_like Glutare 98.2 8.9E-06 1.9E-10 51.9 6.9 74 19-94 6-84 (90)
100 TIGR02180 GRX_euk Glutaredoxin 98.1 1.1E-05 2.4E-10 50.3 6.6 74 23-96 1-77 (84)
101 cd03177 GST_C_Delta_Epsilon GS 98.1 7.3E-06 1.6E-10 54.8 6.0 67 111-182 2-68 (118)
102 cd03190 GST_C_ECM4_like GST_C 98.1 1.1E-05 2.4E-10 55.9 7.0 65 110-182 3-67 (142)
103 cd03179 GST_C_1 GST_C family, 98.1 2.4E-06 5.2E-11 55.6 2.9 70 111-182 2-73 (105)
104 cd03184 GST_C_Omega GST_C fami 98.0 2.2E-05 4.8E-10 53.0 5.5 63 111-182 2-64 (124)
105 cd03183 GST_C_Theta GST_C fami 97.9 3.3E-05 7.1E-10 52.1 6.2 70 112-182 2-76 (126)
106 cd03192 GST_C_Sigma_like GST_C 97.8 9.5E-05 2.1E-09 48.1 6.3 70 111-182 2-71 (104)
107 cd03210 GST_C_Pi GST_C family, 97.8 0.00011 2.4E-09 49.7 6.7 66 110-182 2-68 (126)
108 cd03208 GST_C_Alpha GST_C fami 97.8 9.2E-05 2E-09 51.0 6.0 69 110-182 2-71 (137)
109 cd03031 GRX_GRX_like Glutaredo 97.7 0.00014 3.1E-09 50.5 6.8 70 22-93 1-80 (147)
110 cd00299 GST_C_family Glutathio 97.7 2.6E-05 5.5E-10 49.9 2.7 65 116-182 2-66 (100)
111 PF13410 GST_C_2: Glutathione 97.7 6.8E-05 1.5E-09 45.0 3.8 35 146-182 2-36 (69)
112 PRK12759 bifunctional gluaredo 97.6 0.00026 5.6E-09 57.6 7.8 69 21-92 2-79 (410)
113 KOG1752 Glutaredoxin and relat 97.6 0.00033 7.1E-09 45.7 6.7 77 17-93 10-87 (104)
114 PRK10824 glutaredoxin-4; Provi 97.6 0.00031 6.7E-09 46.8 6.6 73 19-93 13-90 (115)
115 cd03209 GST_C_Mu GST_C family, 97.6 0.00022 4.9E-09 47.8 6.1 64 111-182 2-65 (121)
116 cd03206 GST_C_7 GST_C family, 97.6 7.2E-05 1.6E-09 48.4 3.6 62 116-182 2-63 (100)
117 PF14497 GST_C_3: Glutathione 97.6 2.2E-05 4.7E-10 50.8 0.5 36 147-182 32-67 (99)
118 cd03195 GST_C_4 GST_C family, 97.5 8.9E-05 1.9E-09 49.3 3.0 70 110-182 2-72 (114)
119 PF14834 GST_C_4: Glutathione 97.4 0.00055 1.2E-08 45.0 5.6 73 108-182 1-73 (117)
120 PF00043 GST_C: Glutathione S- 97.4 0.00043 9.3E-09 44.0 4.7 37 144-182 22-58 (95)
121 cd03207 GST_C_8 GST_C family, 97.3 0.00011 2.3E-09 47.8 1.2 58 117-182 3-60 (103)
122 PTZ00062 glutaredoxin; Provisi 97.2 0.0018 4E-08 47.5 6.9 73 19-93 111-188 (204)
123 cd02973 TRX_GRX_like Thioredox 97.1 0.0041 8.8E-08 36.9 6.8 58 22-85 2-64 (67)
124 cd03205 GST_C_6 GST_C family, 96.8 0.0041 9E-08 39.9 5.5 61 117-182 3-64 (98)
125 cd03193 GST_C_Metaxin GST_C fa 96.8 0.0019 4.2E-08 40.6 3.8 32 149-182 18-49 (88)
126 cd03203 GST_C_Lambda GST_C fam 96.8 0.0057 1.2E-07 40.9 6.2 61 108-182 1-62 (120)
127 cd03194 GST_C_3 GST_C family, 96.8 0.0011 2.4E-08 44.1 2.6 34 148-182 39-73 (114)
128 cd03198 GST_C_CLIC GST_C famil 96.8 0.0017 3.8E-08 44.4 3.6 39 144-182 23-75 (134)
129 cd03030 GRX_SH3BGR Glutaredoxi 96.7 0.012 2.6E-07 37.6 6.8 68 23-92 2-79 (92)
130 PRK01655 spxA transcriptional 96.7 0.0034 7.4E-08 42.8 4.3 32 23-54 2-33 (131)
131 cd03036 ArsC_like Arsenate Red 96.6 0.003 6.5E-08 41.8 3.9 32 23-54 1-32 (111)
132 COG4545 Glutaredoxin-related p 96.6 0.009 2E-07 36.1 5.4 65 21-85 2-77 (85)
133 cd03211 GST_C_Metaxin2 GST_C f 96.6 0.005 1.1E-07 41.7 5.0 34 147-182 54-87 (126)
134 cd03204 GST_C_GDAP1 GST_C fami 96.6 0.0035 7.5E-08 41.5 4.0 39 144-182 23-69 (111)
135 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0045 9.8E-08 41.2 4.4 32 23-54 2-33 (115)
136 cd03202 GST_C_etherase_LigE GS 96.6 0.0028 6E-08 42.8 3.4 33 148-182 56-88 (124)
137 cd02977 ArsC_family Arsenate R 96.5 0.0046 1E-07 40.4 4.1 32 23-54 1-32 (105)
138 PRK12559 transcriptional regul 96.3 0.0093 2E-07 40.7 4.6 33 23-55 2-34 (131)
139 PRK13344 spxA transcriptional 96.2 0.0095 2.1E-07 40.7 4.4 32 23-54 2-33 (132)
140 cd03201 GST_C_DHAR GST_C famil 96.2 0.014 3.1E-07 39.1 5.1 33 149-182 29-61 (121)
141 cd03035 ArsC_Yffb Arsenate Red 96.1 0.011 2.4E-07 38.7 4.1 32 23-54 1-32 (105)
142 TIGR01617 arsC_related transcr 96.0 0.011 2.4E-07 39.4 4.0 32 23-54 1-32 (117)
143 PRK10026 arsenate reductase; P 96.0 0.014 3.1E-07 40.3 4.6 34 21-54 2-35 (141)
144 cd03212 GST_C_Metaxin1_3 GST_C 96.0 0.0097 2.1E-07 40.9 3.7 35 146-182 60-94 (137)
145 cd03033 ArsC_15kD Arsenate Red 95.8 0.019 4.1E-07 38.2 4.2 32 23-54 2-33 (113)
146 COG1393 ArsC Arsenate reductas 95.6 0.026 5.7E-07 37.7 4.5 33 22-54 2-34 (117)
147 PRK10853 putative reductase; P 95.2 0.038 8.2E-07 37.0 4.1 32 23-54 2-33 (118)
148 TIGR00411 redox_disulf_1 small 95.0 0.2 4.3E-06 30.5 6.9 57 22-82 2-62 (82)
149 TIGR01616 nitro_assoc nitrogen 94.9 0.055 1.2E-06 36.6 4.3 33 22-54 2-34 (126)
150 PF05768 DUF836: Glutaredoxin- 94.6 0.1 2.2E-06 32.3 4.8 55 22-81 1-57 (81)
151 PHA02125 thioredoxin-like prot 94.6 0.24 5.2E-06 30.0 6.4 51 23-79 2-52 (75)
152 TIGR00412 redox_disulf_2 small 94.2 0.56 1.2E-05 28.5 7.4 55 23-85 3-61 (76)
153 TIGR00014 arsC arsenate reduct 94.2 0.092 2E-06 34.8 4.1 32 23-54 1-32 (114)
154 cd03034 ArsC_ArsC Arsenate Red 94.0 0.1 2.3E-06 34.5 4.1 32 23-54 1-32 (112)
155 COG0278 Glutaredoxin-related p 93.5 0.51 1.1E-05 30.4 6.3 75 19-95 13-93 (105)
156 PF11287 DUF3088: Protein of u 93.4 0.18 4E-06 33.1 4.3 67 30-99 23-108 (112)
157 cd03197 GST_C_mPGES2 GST_C fam 93.3 0.16 3.4E-06 35.4 4.0 32 150-182 79-110 (149)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 93.0 0.66 1.4E-05 29.2 6.4 58 22-85 15-77 (89)
159 cd01659 TRX_superfamily Thiore 92.4 0.49 1.1E-05 26.2 4.9 53 23-78 1-58 (69)
160 PF04908 SH3BGR: SH3-binding, 91.2 0.78 1.7E-05 29.7 5.1 71 22-94 2-87 (99)
161 PF03960 ArsC: ArsC family; I 85.5 1.2 2.7E-05 29.1 3.3 29 26-54 1-29 (110)
162 cd02953 DsbDgamma DsbD gamma f 84.8 3.2 7E-05 26.4 5.1 56 22-78 14-77 (104)
163 PF13192 Thioredoxin_3: Thiore 81.7 9.1 0.0002 23.0 7.1 57 23-87 3-63 (76)
164 TIGR01295 PedC_BrcD bacterioci 79.9 15 0.00033 24.5 7.6 62 23-84 27-103 (122)
165 cd02989 Phd_like_TxnDC9 Phosdu 79.1 13 0.00028 24.3 6.4 62 21-86 24-90 (113)
166 COG3019 Predicted metal-bindin 79.0 6.7 0.00014 27.0 4.9 76 17-98 22-104 (149)
167 KOG1147 Glutamyl-tRNA syntheta 78.4 1.4 3.1E-05 37.0 1.9 75 79-182 43-118 (712)
168 cd02975 PfPDO_like_N Pyrococcu 76.8 13 0.00028 24.3 5.9 52 23-78 25-80 (113)
169 cd02949 TRX_NTR TRX domain, no 74.7 18 0.00039 22.6 6.5 59 22-84 16-80 (97)
170 PF09635 MetRS-N: MetRS-N bind 71.8 2.4 5.3E-05 28.4 1.4 27 73-99 35-63 (122)
171 TIGR03140 AhpF alkyl hydropero 71.4 5.7 0.00012 33.5 3.8 64 22-86 120-183 (515)
172 PRK15317 alkyl hydroperoxide r 69.0 7.8 0.00017 32.7 4.2 61 22-86 119-182 (517)
173 COG3011 Predicted thiol-disulf 67.4 38 0.00082 23.3 8.9 79 18-98 5-87 (137)
174 TIGR02681 phage_pRha phage reg 66.7 7.7 0.00017 25.5 2.9 26 74-99 2-28 (108)
175 cd02947 TRX_family TRX family; 66.2 25 0.00054 20.8 7.3 56 22-83 13-75 (93)
176 cd02984 TRX_PICOT TRX domain, 65.4 30 0.00064 21.3 6.0 59 22-84 17-81 (97)
177 KOG0911 Glutaredoxin-related p 64.9 15 0.00032 27.4 4.4 72 21-94 139-215 (227)
178 TIGR03143 AhpF_homolog putativ 61.8 35 0.00076 29.1 6.7 58 22-85 479-541 (555)
179 PF04134 DUF393: Protein of un 60.6 35 0.00075 22.1 5.3 72 25-97 1-77 (114)
180 TIGR02187 GlrX_arch Glutaredox 59.6 62 0.0013 23.7 7.0 53 22-78 136-191 (215)
181 cd02963 TRX_DnaJ TRX domain, D 59.4 45 0.00098 21.5 7.0 60 21-84 26-92 (111)
182 PF00085 Thioredoxin: Thioredo 59.2 40 0.00086 20.8 8.9 72 20-95 18-101 (103)
183 cd02956 ybbN ybbN protein fami 58.3 41 0.00089 20.7 5.6 58 22-83 15-78 (96)
184 PHA03075 glutaredoxin-like pro 56.8 27 0.00058 23.3 4.0 35 22-56 4-38 (123)
185 cd02951 SoxW SoxW family; SoxW 56.5 54 0.0012 21.5 6.7 19 21-39 16-34 (125)
186 TIGR01068 thioredoxin thioredo 55.8 45 0.00098 20.4 6.0 58 22-83 17-80 (101)
187 cd02948 TRX_NDPK TRX domain, T 54.5 41 0.00088 21.3 4.7 58 22-84 20-84 (102)
188 cd03199 GST_C_GRX2 GST_C famil 53.9 11 0.00024 25.6 2.0 20 149-168 59-78 (128)
189 cd02997 PDI_a_PDIR PDIa family 53.5 38 0.00083 21.0 4.5 60 21-82 19-86 (104)
190 cd02957 Phd_like Phosducin (Ph 49.7 41 0.00088 21.7 4.2 61 22-87 27-92 (113)
191 KOG2824 Glutaredoxin-related p 49.6 27 0.00058 27.0 3.6 72 20-93 130-211 (281)
192 PTZ00051 thioredoxin; Provisio 49.5 60 0.0013 20.0 6.4 59 22-84 21-84 (98)
193 KOG2501 Thioredoxin, nucleored 48.5 61 0.0013 22.9 5.0 46 22-67 35-88 (157)
194 cd02999 PDI_a_ERp44_like PDIa 46.3 34 0.00074 21.7 3.4 57 22-81 21-82 (100)
195 cd02954 DIM1 Dim1 family; Dim1 46.2 86 0.0019 20.8 5.8 59 22-84 17-81 (114)
196 cd02959 ERp19 Endoplasmic reti 45.3 86 0.0019 20.6 6.3 60 22-85 22-91 (117)
197 cd02955 SSP411 TRX domain, SSP 45.2 92 0.002 20.8 6.0 65 23-87 19-97 (124)
198 TIGR02187 GlrX_arch Glutaredox 44.6 1.2E+02 0.0027 22.1 6.8 60 22-83 22-89 (215)
199 PF01323 DSBA: DSBA-like thior 44.6 57 0.0012 23.0 4.7 34 23-56 2-40 (193)
200 cd02987 Phd_like_Phd Phosducin 43.4 75 0.0016 22.7 5.1 60 23-87 87-151 (175)
201 cd04911 ACT_AKiii-YclM-BS_1 AC 42.7 34 0.00073 20.9 2.7 26 30-55 14-39 (76)
202 COG3118 Thioredoxin domain-con 42.6 74 0.0016 25.0 5.1 75 21-99 45-131 (304)
203 PHA02278 thioredoxin-like prot 42.0 93 0.002 20.0 8.0 62 23-84 18-85 (103)
204 cd03003 PDI_a_ERdj5_N PDIa fam 40.5 90 0.002 19.4 6.5 57 22-82 21-83 (101)
205 cd02978 KaiB_like KaiB-like fa 39.8 86 0.0019 19.0 4.5 53 22-78 3-60 (72)
206 PF04564 U-box: U-box domain; 39.6 83 0.0018 18.7 4.6 25 73-98 15-39 (73)
207 cd02950 TxlA TRX-like protein 39.5 1.2E+02 0.0026 20.6 7.5 60 23-84 24-90 (142)
208 cd02985 TRX_CDSP32 TRX family, 39.2 94 0.002 19.6 4.7 62 22-84 18-84 (103)
209 cd03021 DsbA_GSTK DsbA family, 38.1 75 0.0016 23.1 4.5 34 21-54 1-38 (209)
210 PF09413 DUF2007: Domain of un 38.0 47 0.001 19.2 2.8 30 23-52 1-30 (67)
211 PRK09266 hypothetical protein; 36.9 34 0.00074 26.1 2.6 60 40-99 200-259 (266)
212 cd02965 HyaE HyaE family; HyaE 36.7 86 0.0019 20.7 4.1 62 21-86 29-98 (111)
213 cd03004 PDI_a_ERdj5_C PDIa fam 35.8 1.1E+02 0.0024 19.0 5.6 54 21-78 21-78 (104)
214 cd02962 TMX2 TMX2 family; comp 35.4 1.5E+02 0.0033 20.6 7.6 59 23-85 51-122 (152)
215 PRK10996 thioredoxin 2; Provis 35.4 1.4E+02 0.0031 20.1 7.8 59 22-84 55-119 (139)
216 TIGR01126 pdi_dom protein disu 34.0 1E+02 0.0022 18.8 4.2 54 21-78 15-74 (102)
217 PF04399 Glutaredoxin2_C: Glut 33.1 17 0.00036 24.8 0.3 21 148-168 57-77 (132)
218 cd03020 DsbA_DsbC_DsbG DsbA fa 32.8 80 0.0017 22.7 3.9 24 20-43 78-101 (197)
219 PRK09381 trxA thioredoxin; Pro 32.3 1.3E+02 0.0029 18.9 7.8 59 22-84 24-88 (109)
220 PF06110 DUF953: Eukaryotic pr 32.1 66 0.0014 21.5 3.0 60 29-89 36-107 (119)
221 COG5494 Predicted thioredoxin/ 31.8 1.9E+02 0.0041 21.7 5.5 71 21-96 11-86 (265)
222 TIGR01764 excise DNA binding d 31.6 82 0.0018 16.3 3.2 25 71-95 24-48 (49)
223 cd02998 PDI_a_ERp38 PDIa famil 31.6 1.1E+02 0.0023 18.8 4.0 55 21-78 20-80 (105)
224 cd03005 PDI_a_ERp46 PDIa famil 30.5 1.3E+02 0.0029 18.4 4.8 57 22-82 19-84 (102)
225 cd02952 TRP14_like Human TRX-r 30.4 1.7E+02 0.0036 19.5 7.1 58 29-86 38-105 (119)
226 PRK10877 protein disulfide iso 30.3 1.1E+02 0.0024 22.9 4.4 24 21-44 109-132 (232)
227 PRK11657 dsbG disulfide isomer 29.2 1.3E+02 0.0029 22.8 4.7 21 22-42 120-140 (251)
228 COG5515 Uncharacterized conser 29.0 52 0.0011 19.2 1.8 22 22-43 2-27 (70)
229 PRK00293 dipZ thiol:disulfide 28.8 3.9E+02 0.0084 23.2 8.2 60 23-83 478-547 (571)
230 PF13098 Thioredoxin_2: Thiore 28.6 66 0.0014 20.3 2.6 35 22-56 8-49 (112)
231 cd02993 PDI_a_APS_reductase PD 28.5 1.5E+02 0.0033 18.8 4.4 55 21-78 23-83 (109)
232 PF07511 DUF1525: Protein of u 26.6 86 0.0019 20.8 2.8 27 70-96 80-107 (114)
233 PRK09301 circadian clock prote 26.5 1.9E+02 0.0041 18.9 4.6 55 20-78 6-65 (103)
234 KOG3425 Uncharacterized conser 25.9 2.2E+02 0.0047 19.3 5.8 65 29-97 43-122 (128)
235 KOG0910 Thioredoxin-like prote 25.1 2.2E+02 0.0047 20.0 4.7 63 18-84 60-128 (150)
236 PF12728 HTH_17: Helix-turn-he 24.9 1.2E+02 0.0027 16.2 3.6 27 71-97 24-50 (51)
237 cd03002 PDI_a_MPD1_like PDI fa 24.8 1.8E+02 0.004 18.1 6.4 59 22-82 21-85 (109)
238 KOG0907 Thioredoxin [Posttrans 23.9 1.9E+02 0.004 18.8 4.0 58 24-85 26-88 (106)
239 COG2761 FrnE Predicted dithiol 23.7 69 0.0015 24.1 2.2 21 22-42 7-27 (225)
240 cd01557 BCAT_beta_family BCAT_ 22.8 52 0.0011 25.3 1.5 57 40-96 211-271 (279)
241 cd03022 DsbA_HCCA_Iso DsbA fam 22.7 1.6E+02 0.0034 20.7 3.9 31 23-53 1-35 (192)
242 PRK14476 nitrogenase molybdenu 22.6 2.8E+02 0.0061 23.2 5.8 37 88-125 246-282 (455)
243 PF07689 KaiB: KaiB domain; I 22.5 68 0.0015 19.9 1.7 51 24-78 1-56 (82)
244 cd02992 PDI_a_QSOX PDIa family 22.0 2E+02 0.0044 18.6 4.0 22 21-42 21-42 (114)
245 COG5098 Chromosome condensatio 22.0 6.1E+02 0.013 23.1 7.9 88 78-168 270-357 (1128)
246 PF14595 Thioredoxin_9: Thiore 21.9 97 0.0021 20.9 2.5 54 22-78 44-102 (129)
247 cd03023 DsbA_Com1_like DsbA fa 21.9 1.2E+02 0.0025 20.2 3.0 24 19-42 5-28 (154)
248 cd02996 PDI_a_ERp44 PDIa famil 21.7 2.2E+02 0.0047 17.9 6.0 57 22-82 21-89 (108)
249 TIGR00444 mazG MazG family pro 21.7 3.7E+02 0.0081 20.5 6.1 31 142-172 201-231 (248)
250 PRK06092 4-amino-4-deoxychoris 21.3 1.2E+02 0.0027 22.9 3.3 57 40-97 208-264 (268)
251 cd00449 PLPDE_IV PyridoxaL 5'- 21.2 91 0.002 23.3 2.5 57 40-96 196-254 (256)
252 cd03024 DsbA_FrnE DsbA family, 21.0 1.6E+02 0.0034 21.0 3.6 19 23-41 1-19 (201)
253 cd02995 PDI_a_PDI_a'_C PDIa fa 20.5 1E+02 0.0022 18.9 2.3 53 21-78 20-78 (104)
254 cd03025 DsbA_FrnE_like DsbA fa 20.5 2.6E+02 0.0056 19.6 4.7 33 22-54 2-40 (193)
255 cd03006 PDI_a_EFP1_N PDIa fami 20.4 2.6E+02 0.0056 18.2 5.2 57 22-82 32-95 (113)
256 cd02966 TlpA_like_family TlpA- 20.0 98 0.0021 19.0 2.2 21 22-42 22-42 (116)
No 1
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=190.08 Aligned_cols=161 Identities=50% Similarity=0.812 Sum_probs=145.6
Q ss_pred CCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCC-CCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhC
Q 030074 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGE-QFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 20 ~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~ 98 (183)
+.+++||.|+.|++++|||++|..+||+|+.+.+++.+++ ....+|.+.||.++||+|++||.+++||.||++||++.+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 3478999999999999999999999999999999988764 446799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCc
Q 030074 99 PQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGED 178 (183)
Q Consensus 99 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 178 (183)
|+++|+|+ |+.-|+.++++...+.+.+.+.....+..+..+...... ..+....+.+.|..||+.|..+.|+|.+||+
T Consensus 83 P~ppLLP~-d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~-~~W~q~~ItkGF~ALEklL~~~aGkycvGDe 160 (217)
T KOG0868|consen 83 PDPPLLPK-DPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG-DQWAQHFITKGFTALEKLLKSHAGKYCVGDE 160 (217)
T ss_pred CCCCCCCc-CHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh-hHHHHHHHHHhHHHHHHHHHHccCCcccCce
Confidence 99999999 999999999999999999999887777777766533333 6788889999999999999998899999999
Q ss_pred ceec
Q 030074 179 VYMV 182 (183)
Q Consensus 179 ~T~a 182 (183)
+|+|
T Consensus 161 vtiA 164 (217)
T KOG0868|consen 161 VTIA 164 (217)
T ss_pred eehh
Confidence 9987
No 2
>PRK15113 glutathione S-transferase; Provisional
Probab=99.97 E-value=1.2e-30 Score=193.23 Aligned_cols=162 Identities=30% Similarity=0.315 Sum_probs=130.7
Q ss_pred CCCCceEEeecC--CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 18 SSSSKLVLYSYW--QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 18 ~~~~~~~L~~~~--~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
|+.++++||+.+ .||+|++++++|.++||+|+.+.+++..++...++|++.||.|+||+|++||.+|+||.+|++||+
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 345679999965 699999999999999999999999998887788999999999999999999999999999999999
Q ss_pred HhCCCCC---CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 030074 96 EKYPQRA---LLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAK 172 (183)
Q Consensus 96 ~~~~~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 172 (183)
+++++.. |+|. ++.+++++++|+.|+...+..................+...+...+.+.+.+..+|++|++. ++
T Consensus 81 ~~~~~~~~~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~ 158 (214)
T PRK15113 81 ERFAPPAWERIYPA-DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QP 158 (214)
T ss_pred HHcCCCCccccCCC-CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 9998655 9998 99999999999999987665432211101111111122334567778899999999999852 57
Q ss_pred eeecCcceec
Q 030074 173 YATGEDVYMV 182 (183)
Q Consensus 173 ~l~G~~~T~a 182 (183)
|++|+ +|+|
T Consensus 159 ~l~G~-~TlA 167 (214)
T PRK15113 159 NLFGE-WCIA 167 (214)
T ss_pred EeeCC-ccHH
Confidence 99996 9986
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.97 E-value=3.7e-30 Score=190.32 Aligned_cols=148 Identities=24% Similarity=0.375 Sum_probs=126.5
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~ 101 (183)
+++||+++.||+|++++++|+++|++|+.+.+++. .+.++|+++||.|+||+|+++|.+|+||.||++||++++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999999864 567899999999999999999999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCccee
Q 030074 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYM 181 (183)
Q Consensus 102 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 181 (183)
.|+|. ++.+++++++|+.++...+...... .. ...+...+...+.+.+.+..+|++|++ ++|++|+++|+
T Consensus 87 ~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~ 156 (211)
T PRK09481 87 PLMPV-YPVARGESRLMMHRIEKDWYSLMNK----IV---NGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSL 156 (211)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH----Hh---cCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccH
Confidence 89998 9999999999998876554332211 11 123345567778899999999999987 89999999998
Q ss_pred c
Q 030074 182 V 182 (183)
Q Consensus 182 a 182 (183)
|
T Consensus 157 A 157 (211)
T PRK09481 157 V 157 (211)
T ss_pred H
Confidence 6
No 4
>PLN02473 glutathione S-transferase
Probab=99.97 E-value=1.3e-29 Score=187.68 Aligned_cols=158 Identities=23% Similarity=0.284 Sum_probs=132.9
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCC-
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ- 100 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~- 100 (183)
.||||+.+.||+++|++++|+++|++|+.+.++..+++.+.++|++.||.|++|+|+++|.+|+||.+|++||+++++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 4799999999999999999999999999999998888888999999999999999999999999999999999999974
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHH---hhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceee
Q 030074 101 -RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLK-YIE---DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYAT 175 (183)
Q Consensus 101 -~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 175 (183)
.+|+|. ++.+++++++|+.+..+.+.+........ ... .........+...+.+.+.++.||++|++ ++|++
T Consensus 82 ~~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 158 (214)
T PLN02473 82 GTDLLGK-TLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRYLG 158 (214)
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCccc
Confidence 369999 99999999999999988776543322211 111 11123345666778899999999999987 78999
Q ss_pred cCcceec
Q 030074 176 GEDVYMV 182 (183)
Q Consensus 176 G~~~T~a 182 (183)
|+++|+|
T Consensus 159 Gd~~t~A 165 (214)
T PLN02473 159 GDEFTLA 165 (214)
T ss_pred CCCCCHH
Confidence 9999986
No 5
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.97 E-value=6.8e-29 Score=183.27 Aligned_cols=158 Identities=47% Similarity=0.743 Sum_probs=127.7
Q ss_pred EEeecCCChhhHHHHHHHHHhCCceEEEEeeCCC-CCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCCC
Q 030074 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRA 102 (183)
Q Consensus 24 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~~ 102 (183)
+||++..||++++++++|+++||+|+.+.+++.. ++...+++++.||.|++|+|+++|.+|+||.+|++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4898899999999999999999999999988633 345678899999999999999999999999999999999998777
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hhc-CchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcce
Q 030074 103 LLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIE-DKF-GPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVY 180 (183)
Q Consensus 103 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 180 (183)
|+|. ++.+++++++|+.++...+.+........... ... ..+...+...+.+.+.|+.||++|++++++|++|+++|
T Consensus 81 l~p~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 81 LLPA-DPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCC-CHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 9998 99999999999999876665432221211111 111 12233455667799999999999987556899999999
Q ss_pred ec
Q 030074 181 MV 182 (183)
Q Consensus 181 ~a 182 (183)
+|
T Consensus 160 ~A 161 (210)
T TIGR01262 160 LA 161 (210)
T ss_pred HH
Confidence 86
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.96 E-value=3.3e-29 Score=185.68 Aligned_cols=154 Identities=27% Similarity=0.323 Sum_probs=125.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEe-----CC--eeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-----GD--VVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~-----~g--~~l~es~aI~~~l~ 95 (183)
++||+.+ +++|++|+++|+++|++|+.+.+++..++.+.++|+++||.|+||+|++ +| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 7899765 8999999999999999999999998877778899999999999999996 45 47999999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceee
Q 030074 96 EKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYAT 175 (183)
Q Consensus 96 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 175 (183)
++++ .+.|. ++.+++++++|+.|....+.+.+..............+...+...+.+.+.+..||++|++ ++|++
T Consensus 81 ~~~~--~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 155 (215)
T PRK13972 81 EKTG--LFLSH-ETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPWLG 155 (215)
T ss_pred HhcC--CCCCC-CHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccccc
Confidence 9985 47787 8999999999999998777654322100000111123345566778899999999999987 79999
Q ss_pred cCcceec
Q 030074 176 GEDVYMV 182 (183)
Q Consensus 176 G~~~T~a 182 (183)
|+++|+|
T Consensus 156 Gd~~t~A 162 (215)
T PRK13972 156 GENYSIA 162 (215)
T ss_pred CCCCCHH
Confidence 9999986
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=181.93 Aligned_cols=156 Identities=39% Similarity=0.500 Sum_probs=134.4
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCC-eeEEehHHHHHHHHHhCCCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGD-VVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g-~~l~es~aI~~~l~~~~~~~ 101 (183)
++||+.+.||+|+|++++|.++|++|+.+.+++.. +.+.++|++.||.|+||+|++++ .+|+||.+|++||++++|++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999987 77889999999999999999655 49999999999999999875
Q ss_pred CCCCCCCHH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHhccCCceeecC
Q 030074 102 ALLPAADPQ---QRALNLQAASIISSSMQPLHMLSLLKYIEDKFG-PDERLLWVQTHIEKGFLALEKLLIDFAAKYATGE 177 (183)
Q Consensus 102 ~l~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 177 (183)
.|+|. ++. +|+++..|+.+....+.+.+............. .+...+...+.+...+..+|..|+. ++|++|+
T Consensus 80 ~l~p~-~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 156 (211)
T COG0625 80 PLLPA-DPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLAGD 156 (211)
T ss_pred CcCCC-CchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 59998 764 888999999999888888766554443111112 3566788899999999999999999 8999999
Q ss_pred cceec
Q 030074 178 DVYMV 182 (183)
Q Consensus 178 ~~T~a 182 (183)
++|+|
T Consensus 157 ~~tiA 161 (211)
T COG0625 157 RFTIA 161 (211)
T ss_pred CCCHH
Confidence 99987
No 8
>PLN02395 glutathione S-transferase
Probab=99.96 E-value=3.8e-28 Score=179.93 Aligned_cols=156 Identities=29% Similarity=0.357 Sum_probs=129.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCC--
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ-- 100 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~-- 100 (183)
+|||+ ..+++++|++++|.++|++|+.+.+++..++.+.++|++.||.|+||+|+++|.+|+||.+|++||+++++.
T Consensus 3 ~~ly~-~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYG-PAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEc-CCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 79997 455689999999999999999999998877778899999999999999999999999999999999999874
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHH-H---hhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeec
Q 030074 101 RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYI-E---DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATG 176 (183)
Q Consensus 101 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 176 (183)
..|+|. ++.+++++++|+.+....+.+.......... . +....++..+...+.+.+.+..||++|++ ++|++|
T Consensus 82 ~~l~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 158 (215)
T PLN02395 82 PDLLGK-TIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKYLAG 158 (215)
T ss_pred cCcCCC-ChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--CccccC
Confidence 369999 9999999999999988776554332222111 1 11223445566788899999999999987 789999
Q ss_pred Ccceec
Q 030074 177 EDVYMV 182 (183)
Q Consensus 177 ~~~T~a 182 (183)
+++|+|
T Consensus 159 ~~~s~A 164 (215)
T PLN02395 159 DFVSLA 164 (215)
T ss_pred CCcCHH
Confidence 999986
No 9
>PRK11752 putative S-transferase; Provisional
Probab=99.96 E-value=3.9e-27 Score=179.40 Aligned_cols=156 Identities=28% Similarity=0.322 Sum_probs=124.5
Q ss_pred CceEEeecCCChhhHHHHHHHHHh------CCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC----CeeEEehHHH
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLK------GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG----DVVVSDSYAI 90 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~------gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~----g~~l~es~aI 90 (183)
++++||+. .||+|++|+++|+++ |++|+.+.+++..++...++|+++||.|+||+|+++ |.+|+||.+|
T Consensus 43 ~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 43 HPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 47999985 599999999999997 999999999988777788999999999999999954 3699999999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccC
Q 030074 91 LLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFA 170 (183)
Q Consensus 91 ~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~ 170 (183)
++||+++++ .|+|. ++.+++++++|+.+...............+.......+...+...+.+.+.|+.||++|++
T Consensus 122 l~YL~~~~~--~L~P~-~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~-- 196 (264)
T PRK11752 122 LLYLAEKFG--AFLPK-DLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE-- 196 (264)
T ss_pred HHHHHHhcC--CcCCC-CHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 999999997 49998 9999999999999886653211111111111111122334566777889999999999987
Q ss_pred CceeecCcceec
Q 030074 171 AKYATGEDVYMV 182 (183)
Q Consensus 171 ~~~l~G~~~T~a 182 (183)
++||+|+++|+|
T Consensus 197 ~~fl~Gd~~TlA 208 (264)
T PRK11752 197 HEYIAGDEYTIA 208 (264)
T ss_pred CCCCCCCccCHH
Confidence 789999999986
No 10
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-27 Score=171.54 Aligned_cols=151 Identities=29% Similarity=0.381 Sum_probs=130.5
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhC-CCCccceEEeCCeeEEehHHHHHHHHHhCC
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN-PLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p~g~~P~L~~~g~~l~es~aI~~~l~~~~~ 99 (183)
..++||+...|||++|++++|+++||+|+.+..++. .++++|+..| +.++||+|+++|..+.||..|++||++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhcc
Confidence 469999999999999999999999999999999987 4789999999 789999999999999999999999999999
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCc
Q 030074 100 -QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGED 178 (183)
Q Consensus 100 -~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 178 (183)
+.+++|. ||.+|++.+.|+.+++.-+........ . ....+..+...+.+.+.|..||+.|.. +++|+.|++
T Consensus 85 ~~~~iLP~-DPy~Ra~arfwa~~id~~~~~~~~~~~-----~-~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~ 156 (231)
T KOG0406|consen 85 SGPPILPS-DPYERAQARFWAEYIDKKVFFVGRFVV-----A-AKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGET 156 (231)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHH-----h-hcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCC
Confidence 6999999 999999999999999976654433221 1 113345577888899999999999993 389999998
Q ss_pred ceec
Q 030074 179 VYMV 182 (183)
Q Consensus 179 ~T~a 182 (183)
++++
T Consensus 157 ~G~v 160 (231)
T KOG0406|consen 157 IGFV 160 (231)
T ss_pred cCHh
Confidence 8763
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.95 E-value=4.2e-27 Score=172.77 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=123.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~~ 101 (183)
++||++..||++++++++|+++|++|+.+.++...+ .+++...||.|++|+|+ ++|.+++||.+|++||++++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998886543 34666789999999998 78999999999999999998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCccee
Q 030074 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYM 181 (183)
Q Consensus 102 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 181 (183)
.|+|. ++.+++++++|..+....+..................+...+...+.+.+.|..||++|.+ ++ ++|+++|+
T Consensus 78 ~l~p~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t~ 153 (202)
T PRK10357 78 AMLPR-DPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVNL 153 (202)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcCH
Confidence 79998 9999999999998887766554332222221111223344566778899999999999987 67 99999998
Q ss_pred c
Q 030074 182 V 182 (183)
Q Consensus 182 a 182 (183)
|
T Consensus 154 A 154 (202)
T PRK10357 154 A 154 (202)
T ss_pred H
Confidence 6
No 12
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.95 E-value=3.4e-27 Score=173.09 Aligned_cols=151 Identities=24% Similarity=0.399 Sum_probs=123.3
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCC-CCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGE-QFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQ 100 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~ 100 (183)
|+||+... +++++++++|+++||+|+.+.+++..++ ...++|+++||.|++|+|+ +||.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred Cceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 58998764 5899999999999999999999987653 4568999999999999998 7889999999999999999987
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcc
Q 030074 101 RALL-PAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDV 179 (183)
Q Consensus 101 ~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 179 (183)
..++ |. ++.+++++++|+.++...+.+.+... .. ....+...+...+.+.+.|..||+.|+. ++|++|+++
T Consensus 80 ~~l~~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~ 151 (201)
T PRK10542 80 RQLLAPV-GSLSRYHTIEWLNYIATELHKGFTPL----FR-PDTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQRF 151 (201)
T ss_pred cccCCCC-CcHHHHHHHHHHHHHHhhhhhhhhhc----cC-CCChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCC
Confidence 6766 55 78899999999998877665543221 11 1122334466778899999999999987 789999999
Q ss_pred eec
Q 030074 180 YMV 182 (183)
Q Consensus 180 T~a 182 (183)
|+|
T Consensus 152 s~A 154 (201)
T PRK10542 152 TIA 154 (201)
T ss_pred cHH
Confidence 986
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-26 Score=172.84 Aligned_cols=158 Identities=35% Similarity=0.420 Sum_probs=138.7
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCC-C
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP-Q 100 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~-~ 100 (183)
.++||++..++.|+++.+++.++|++|+.+.++...+++..++|+++||.|+||+|+++|..++||.||+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHhcchhhHH--HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecC
Q 030074 101 -RALLPAADPQQRALNLQAASIISSSMQPLH--MLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGE 177 (183)
Q Consensus 101 -~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 177 (183)
..|+|. +..+++.|++|+.+..+.+.+.. ...+.+............+.....+...++.+|+.|.+ +.|+.|+
T Consensus 82 ~~~l~p~-~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl~g~ 158 (226)
T KOG0867|consen 82 GGILLPK-DLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYLAGD 158 (226)
T ss_pred CcccCCc-CHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcccCC
Confidence 349999 99999999999999999888763 33333322222235566788899999999999999999 8999999
Q ss_pred cceec
Q 030074 178 DVYMV 182 (183)
Q Consensus 178 ~~T~a 182 (183)
++|+|
T Consensus 159 ~~tlA 163 (226)
T KOG0867|consen 159 QLTLA 163 (226)
T ss_pred cccHH
Confidence 99986
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.93 E-value=5.4e-24 Score=156.72 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=106.4
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCC-CChhhh--hhCCCCccceEEeCCeeEEehHHHHHHHHHhC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQ-FSPEFE--ELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~-~~~~~~--~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~ 98 (183)
+++||+++.++++++++++|+++|++|+.+.+.....+. ..++++ ..||+|++|+|++||.+++||.||++||++++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~ 83 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKY 83 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 489999999999999999999999999999663211000 111222 47999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCc
Q 030074 99 PQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGED 178 (183)
Q Consensus 99 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 178 (183)
+ +.+. +..++..++.+...+.+........ ... .+...+...+.+.+.+..||+.|++++++|++|++
T Consensus 84 ~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~ 151 (205)
T PTZ00057 84 K---ICGE-SELNEFYADMIFCGVQDIHYKFNNT---NLF-----KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDN 151 (205)
T ss_pred C---CCCC-CHHHHHHHHHHHHHHHHHHHHHhhh---HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCc
Confidence 7 5566 6555555555443332222111110 011 11223456778999999999999875568999999
Q ss_pred ceec
Q 030074 179 VYMV 182 (183)
Q Consensus 179 ~T~a 182 (183)
+|+|
T Consensus 152 ~T~A 155 (205)
T PTZ00057 152 LTYA 155 (205)
T ss_pred ccHH
Confidence 9986
No 15
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.8e-24 Score=154.28 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=125.5
Q ss_pred CCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCC
Q 030074 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 20 ~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~ 99 (183)
|+.++|+|+...++++.+|++++++|++|+++++...+. ++..+...|+|++|+|..||..+.+|.||+|||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 346999999999999999999999999999999987642 44555558999999999999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHH-HHHHHHHHHHHHHHHHHhccCCceeecCc
Q 030074 100 QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLL-WVQTHIEKGFLALEKLLIDFAAKYATGED 178 (183)
Q Consensus 100 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 178 (183)
|.++ ++.|.++++++.+-+.+.....+...+.... ....+...+ .......+.+..+++.|..+++.||+||+
T Consensus 78 ---l~Gk-t~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~--~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~ 151 (206)
T KOG1695|consen 78 ---LAGK-TEEEEAWVDMIVDQFKDFRWEIFRQPYTAPE--AGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDK 151 (206)
T ss_pred ---cCCC-CHHHHHHHHHHHHhhhhHHHHHHHHhhhhhh--hccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCc
Confidence 9999 9999999999999888776654333222111 111222222 56777888999999999977778999999
Q ss_pred ceec
Q 030074 179 VYMV 182 (183)
Q Consensus 179 ~T~a 182 (183)
+|+|
T Consensus 152 lT~a 155 (206)
T KOG1695|consen 152 LTWA 155 (206)
T ss_pred ccHH
Confidence 9986
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.91 E-value=1.6e-23 Score=155.05 Aligned_cols=134 Identities=28% Similarity=0.270 Sum_probs=102.9
Q ss_pred cCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCCCCCCCC
Q 030074 28 YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAA 107 (183)
Q Consensus 28 ~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~~l~p~~ 107 (183)
+..||+|+|++++|+++|++|+.+.+++. .+.++|+++||.|+||+|+++|.+|+||.+|++||++++++..+ .
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~- 90 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--K- 90 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--C-
Confidence 45699999999999999999999999886 35679999999999999999999999999999999999986555 3
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
++.+++++...+. ..+.. +.... .. .+...+.+.+.|..||++|+.++++|++|+++|+|
T Consensus 91 ~~~~~a~i~~~~~-------~~~~~----~~~~~--~~--~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~A 150 (213)
T PLN02378 91 TPAEFASVGSNIF-------GTFGT----FLKSK--DS--NDGSEHALLVELEALENHLKSHDGPFIAGERVSAV 150 (213)
T ss_pred CHHHHHHHHHHHH-------HHHHH----HHhcC--Ch--hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchh
Confidence 5667776654321 11111 11111 11 12334567788999999998544799999999986
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=99.91 E-value=1.4e-23 Score=154.95 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=108.0
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~~ 101 (183)
|+||++..||+|+|++++|+++|++|+.+.++... ... -...||.++||+|+ ++|.+++||.+|++||+++++++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999998875432 222 25688999999995 88999999999999999999864
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHH-Hh----------------hcCc-h---HHHHHHHHHHHHHHH
Q 030074 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYI-ED----------------KFGP-D---ERLLWVQTHIEKGFL 160 (183)
Q Consensus 102 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~-~---~~~~~~~~~~~~~l~ 160 (183)
.+ +. .+++.++.|+.++...+...+...+.... .. .... + ...+...+.+++.|+
T Consensus 77 ~l-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (210)
T PRK10387 77 LL-TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLR 152 (210)
T ss_pred cC-CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHH
Confidence 44 32 24678888888776555443222111000 00 0000 0 011355678899999
Q ss_pred HHHHHHhccCCceeecCcceec
Q 030074 161 ALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 161 ~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+|++|+ ++|++|+++|+|
T Consensus 153 ~le~~L~---~~~l~G~~~s~A 171 (210)
T PRK10387 153 ALDPLIV---KPNAVNGELSTD 171 (210)
T ss_pred HHHHHhc---CccccCCCCCHH
Confidence 9999995 389999999986
No 18
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.89 E-value=4.2e-22 Score=148.51 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=103.9
Q ss_pred cCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCC---CCCC
Q 030074 28 YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ---RALL 104 (183)
Q Consensus 28 ~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~---~~l~ 104 (183)
...||+|++++++|.++|++|+.+.+++. .+.++|+++||.|++|+|+++|.+++||.+|++||+++++. +.+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~---~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK---RKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC---CCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC
Confidence 35789999999999999999999999987 35789999999999999999999999999999999999964 4466
Q ss_pred CCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhc----------------
Q 030074 105 PAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID---------------- 168 (183)
Q Consensus 105 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---------------- 168 (183)
|. ++..++... + +...+.. +... ..+...+...+.+.+.+..||+.|.+
T Consensus 93 p~-~~~~~~~~~---~-----l~~~~~~----~~~~--~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~ 157 (236)
T TIGR00862 93 PK-HPESNTAGL---D-----IFAKFSA----YIKN--SNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKV 157 (236)
T ss_pred CC-CHHHHHHHH---H-----HHHHHHH----HHHc--CCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 66 555444321 1 1111111 1111 12333455667799999999999973
Q ss_pred cCCceeecCcceec
Q 030074 169 FAAKYATGEDVYMV 182 (183)
Q Consensus 169 ~~~~~l~G~~~T~a 182 (183)
.+++|+.|+++|+|
T Consensus 158 ~~~~f~~Gd~~tla 171 (236)
T TIGR00862 158 SRRKFLDGDELTLA 171 (236)
T ss_pred cCCCcccCCccchh
Confidence 13799999999986
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.89 E-value=6.1e-22 Score=150.52 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=102.5
Q ss_pred CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCCCCCCCCC
Q 030074 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~~l~p~~~ 108 (183)
..||+|++++++|+++|++|+.+.+++. .+.++|+++||.|++|+|+++|.+++||.+|++||++++++..| . +
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L--~-~ 144 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPL--A-T 144 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCC--C-C
Confidence 4599999999999999999999999875 46789999999999999998889999999999999999987666 3 5
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+.+++++..++.. .+. .+.... ++. +...+.+.+.+..||++|+++ ++|++|+++|+|
T Consensus 145 ~~era~i~~~l~~-------~~~----~~~~~~--~~~--~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlA 202 (265)
T PLN02817 145 PPEKASVGSKIFS-------TFI----GFLKSK--DPG--DGTEQALLDELTSFDDYIKEN-GPFINGEKISAA 202 (265)
T ss_pred HHHHHHHHHHHHH-------HHH----HHhccC--Ccc--hHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHH
Confidence 6788887765321 111 111111 111 122356778899999999863 689999999986
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.88 E-value=8.4e-22 Score=145.43 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=105.1
Q ss_pred EEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCCCC
Q 030074 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQRA 102 (183)
Q Consensus 24 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~~~ 102 (183)
+||++..||+|+||+++|.++|++|+.+.+.... .. ...+.||.|++|+|+ ++|.+++||.+|++||+++++.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~--~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD--EE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc--ch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999999987664332 22 337889999999998 899999999999999999997543
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHH--------------HHHhh---cCch----HHHHHHHHHHHHHHHH
Q 030074 103 LLPAADPQQRALNLQAASIISSSMQPLHMLSLLK--------------YIEDK---FGPD----ERLLWVQTHIEKGFLA 161 (183)
Q Consensus 103 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~----~~~~~~~~~~~~~l~~ 161 (183)
+.+. +++++++|+.++...+...+...+.. +.... .+.. ...+...+.+++.|+.
T Consensus 77 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 152 (209)
T TIGR02182 77 LTGK----VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEE 152 (209)
T ss_pred CCCC----ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHH
Confidence 3332 45677788777665554332211100 00000 0000 0013456778999999
Q ss_pred HHHHHhccCCceeecCcceec
Q 030074 162 LEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 162 le~~L~~~~~~~l~G~~~T~a 182 (183)
+|++|++ ++|+.| ++|+|
T Consensus 153 le~~L~~--~~~l~g-~~TiA 170 (209)
T TIGR02182 153 LDKLIDG--PNAVNG-ELSED 170 (209)
T ss_pred HHHHHhC--ccccCC-CCCHH
Confidence 9999988 899955 59986
No 21
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.85 E-value=6.2e-21 Score=117.70 Aligned_cols=73 Identities=44% Similarity=0.584 Sum_probs=68.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
++||++..|++|++++++|+++|++|+.+.+++..++.+.++|.++||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999887777778899999999999999999999999999999985
No 22
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=3.6e-20 Score=114.98 Aligned_cols=74 Identities=50% Similarity=0.708 Sum_probs=69.0
Q ss_pred EeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCC
Q 030074 25 LYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 25 L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~ 101 (183)
||++..||||+|++++|+++||+|+.+.++... ..+++.+.||.+++|+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998663 47899999999999999999999999999999999999864
No 23
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.83 E-value=4.6e-20 Score=114.18 Aligned_cols=74 Identities=45% Similarity=0.585 Sum_probs=69.4
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
++||+++.||+|++++++|+++|++|+.+.+++..++...++|++.||.|++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999999877777789999999999999999999999999999999974
No 24
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.83 E-value=6.9e-20 Score=114.00 Aligned_cols=76 Identities=45% Similarity=0.676 Sum_probs=70.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~ 98 (183)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999987766677899999999999999999999999999999999864
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.82 E-value=9.1e-20 Score=113.42 Aligned_cols=75 Identities=47% Similarity=0.641 Sum_probs=69.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHh
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~ 97 (183)
++||+++.||+|++++++|+++|++|+.+.++...++.+.++|.+.||.|++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 789999999999999999999999999999988766667789999999999999999999999999999999863
No 26
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.82 E-value=1.4e-19 Score=113.98 Aligned_cols=77 Identities=44% Similarity=0.647 Sum_probs=70.3
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC---CeeEEehHHHHHHHHHhC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG---DVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~---g~~l~es~aI~~~l~~~~ 98 (183)
+++||+++. |+|++++++|+++|++|+.+.+++..++.+.++|++.||.+++|+|+++ |..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 379998775 9999999999999999999999987666778899999999999999976 899999999999999987
Q ss_pred C
Q 030074 99 P 99 (183)
Q Consensus 99 ~ 99 (183)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 27
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=2.8e-19 Score=110.32 Aligned_cols=73 Identities=40% Similarity=0.550 Sum_probs=67.3
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~ 98 (183)
|+||+.+.||+|++++++|+++|++|+.+.+++. ...+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999988764 456799999999999999999999999999999999864
No 28
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=2.4e-19 Score=110.57 Aligned_cols=73 Identities=44% Similarity=0.649 Sum_probs=68.1
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
++||+++.||+|++++++|+++|++|+.+.++...++.+.++|++.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999887666778899999999999999999999999999999984
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=2e-19 Score=112.16 Aligned_cols=75 Identities=29% Similarity=0.233 Sum_probs=65.8
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEe--CCeeEEehHHHHHHHHHhC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD--GDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~--~g~~l~es~aI~~~l~~~~ 98 (183)
+++||+++.||+|+|++++|.++|++|+.+.+.. ++...+++++.||.+++|+|++ +|.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 3799999999999999999999999999987753 3345678999999999999995 4789999999999999874
No 30
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.80 E-value=3.1e-19 Score=110.21 Aligned_cols=73 Identities=38% Similarity=0.448 Sum_probs=67.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
++||+++.|+++++++++|+++|++|+.+.++...++.+.++|++.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4899999999999999999999999999988876555677899999999999999999999999999999984
No 31
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=4e-19 Score=109.97 Aligned_cols=73 Identities=36% Similarity=0.576 Sum_probs=66.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCC-CccceEEeCCeeEEehHHHHHHHHHhC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-HFVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-g~~P~L~~~g~~l~es~aI~~~l~~~~ 98 (183)
|+||++..||+|++++++|+++|++|+.+.+++. .+.++|++.||. +++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999988764 467789999995 999999999999999999999999763
No 32
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.80 E-value=5.9e-19 Score=109.73 Aligned_cols=74 Identities=45% Similarity=0.622 Sum_probs=65.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCC-CccceEEeC-CeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-HFVPVLVDG-DVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-g~~P~L~~~-g~~l~es~aI~~~l~~ 96 (183)
|+|++|...++++++|++|+++|++|+.+.+++..++.+.++|++.||. |++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3566666667999999999999999999999998888888999999999 999999988 9999999999999985
No 33
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.80 E-value=7.3e-19 Score=109.27 Aligned_cols=76 Identities=49% Similarity=0.735 Sum_probs=69.0
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~ 99 (183)
++||+++. +++++++++|+++|++|+.+.++...++.+.++|.+.||.+++|+|+++|.+++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47998764 78999999999999999999998876667789999999999999999999999999999999999874
No 34
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=4.1e-19 Score=109.70 Aligned_cols=73 Identities=44% Similarity=0.545 Sum_probs=67.1
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~ 95 (183)
++||+++.||+|++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999998876656678899999999999999 68899999999999985
No 35
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.80 E-value=5e-19 Score=109.12 Aligned_cols=73 Identities=55% Similarity=0.910 Sum_probs=68.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
++||++..+++|++++++|+++|++|+.+.++...++.+.++|++.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987666778899999999999999999999999999999985
No 36
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.79 E-value=2e-18 Score=126.39 Aligned_cols=161 Identities=27% Similarity=0.335 Sum_probs=116.7
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCC-C
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP-Q 100 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~-~ 100 (183)
.+.||+++.|--++|||+++.++||.|+...|++..+++..+||..+||.|.||||+++..+|.++.-|+.|+++++- +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcc---------h-h---------hHH---HHHHHH-------HHHhh----------
Q 030074 101 RALLPAADPQQRALNLQAASIISSS---------M-Q---------PLH---MLSLLK-------YIEDK---------- 141 (183)
Q Consensus 101 ~~l~p~~~~~~~~~~~~~~~~~~~~---------~-~---------~~~---~~~~~~-------~~~~~---------- 141 (183)
..|.|.-+..+..++.......+.. + + +.. ...+.+ .....
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~a 185 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLA 185 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 6688863333333333332222211 0 0 000 000000 00000
Q ss_pred -----------cCchHHHHHHHHHHHHHHHHHHHHHhcc--CCceeecCcceec
Q 030074 142 -----------FGPDERLLWVQTHIEKGFLALEKLLIDF--AAKYATGEDVYMV 182 (183)
Q Consensus 142 -----------~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G~~~T~a 182 (183)
-.+....+.+...+...|+..|..|..+ -.+||+|+++|+|
T Consensus 186 kqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslA 239 (325)
T KOG4420|consen 186 KQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLA 239 (325)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHH
Confidence 0122345566677778888888888874 2579999999987
No 37
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.79 E-value=9.6e-19 Score=109.08 Aligned_cols=76 Identities=36% Similarity=0.467 Sum_probs=68.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC-CeeEEehHHHHHHHHHhCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~-g~~l~es~aI~~~l~~~~~ 99 (183)
++||+++.+ ++++++++|+++|++|+.+.++..+++.+.++|++.||.+++|+|+++ |.+++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 579988754 699999999999999999999988777778999999999999999965 8999999999999999875
No 38
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.79 E-value=8.7e-19 Score=108.73 Aligned_cols=72 Identities=29% Similarity=0.359 Sum_probs=66.5
Q ss_pred EEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEe-CCeeEEehHHHHHHHHH
Q 030074 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEE 96 (183)
Q Consensus 24 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~-~g~~l~es~aI~~~l~~ 96 (183)
+||+++.||+|++++++|+++|++|+.+.+++..+ .+.++|+++||.|++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999997654 67889999999999999995 68999999999999986
No 39
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.78 E-value=1.1e-18 Score=110.98 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCC
Q 030074 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ 100 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~ 100 (183)
..||||+++|++|+++|++|+.+.+++. .+.++|+++||.|++|+|+++|.+++||.+|++||+++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 5789999999999999999999999876 45689999999999999999999999999999999999864
No 40
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.78 E-value=6.4e-19 Score=108.76 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=65.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHh
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~ 97 (183)
++||+++.+++|++++++|.++|++|+.+.++.. ...+++++.||.|++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 7999999999999999999999999999998763 33457889999999999999999999999999999863
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.77 E-value=1e-18 Score=107.52 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=64.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
++||++..+++|++++++|+++|++|+.+.+++..+ ..+++.+.||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999999998886532 234588999999999999999999999999999974
No 42
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.77 E-value=2.3e-18 Score=105.73 Aligned_cols=69 Identities=32% Similarity=0.495 Sum_probs=63.0
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEe-CCeeEEehHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYL 94 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~-~g~~l~es~aI~~~l 94 (183)
++||++..||+|+|++++|+++|++|+.+.+++. ...++|++.||.|++|+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999875 34579999999999999996 599999999999996
No 43
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.77 E-value=2.7e-18 Score=108.21 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=64.8
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCC-Chhhhh-----hCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQF-SPEFEE-----LNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~-~~~~~~-----~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
.+||++..+++|++++++|+++|++|+.+.+++..++.. .+++.. .+|+|++|+|++||.+++||.||++||++
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 379999999999999999999999999999998765433 244542 23999999999999999999999999998
Q ss_pred hC
Q 030074 97 KY 98 (183)
Q Consensus 97 ~~ 98 (183)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 44
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.75 E-value=7.7e-18 Score=106.73 Aligned_cols=70 Identities=40% Similarity=0.599 Sum_probs=61.4
Q ss_pred CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC-CeeEEehHHHHHHHHHhCC
Q 030074 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~-g~~l~es~aI~~~l~~~~~ 99 (183)
.+||+|+|++++|+++|++|+.+.+++...+...+++ +.||.+++|+|+++ |.+++||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5799999999999999999999998876544444455 78999999999988 8999999999999999874
No 45
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=1.1e-17 Score=103.22 Aligned_cols=70 Identities=29% Similarity=0.236 Sum_probs=63.6
Q ss_pred eEEeecCCChhhHHHHHHHHH--hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKL--KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~--~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~ 95 (183)
++||++..||+|++++++|++ +|++|+.+.++.. .+.++|++.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988753 4568899999999999998 68899999999999985
No 46
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.74 E-value=1.8e-17 Score=106.16 Aligned_cols=73 Identities=30% Similarity=0.308 Sum_probs=65.4
Q ss_pred CCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC-CeeEEehHHHHHHHH
Q 030074 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLE 95 (183)
Q Consensus 20 ~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~-g~~l~es~aI~~~l~ 95 (183)
..+++||++..||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |.+++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 34699999999999999999999999999999888653 34678899999999999965 899999999999985
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.73 E-value=1.3e-17 Score=102.39 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=60.3
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC-CeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~-g~~l~es~aI~~~l~~ 96 (183)
|+||++..||+|+|+|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999998876431 2244578999999999965 8999999999999974
No 48
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.8e-16 Score=112.95 Aligned_cols=137 Identities=24% Similarity=0.285 Sum_probs=104.5
Q ss_pred CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCCCCCCCCC
Q 030074 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~~l~p~~~ 108 (183)
..||||+++.+.|+.+|++|..+.|+.. .+.++|+.+.|.+++|+|..|+.+++||..|.++|+++++.+.+--- .
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~-~ 94 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTL-A 94 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCccc-C
Confidence 4689999999999999999999999987 46788989999999999999999999999999999999986444332 2
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhc-cCCceeecCcceec
Q 030074 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID-FAAKYATGEDVYMV 182 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~T~a 182 (183)
+.|.+-+- . ..+ ..+-.+... +.++..+...+.+...|..|+++|+. +.++|+.||++|.|
T Consensus 95 ~~E~asag--~----diF-----~kF~~fi~k--sk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~a 156 (221)
T KOG1422|consen 95 PPESASAG--S----DIF-----AKFSAFIKK--SKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLA 156 (221)
T ss_pred CHHHHhhH--H----HHH-----HHHHHHHhC--chhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeee
Confidence 22322111 1 111 111112212 24456677788899999999999997 67999999999986
No 49
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.73 E-value=2.8e-17 Score=101.91 Aligned_cols=68 Identities=29% Similarity=0.369 Sum_probs=60.8
Q ss_pred ceEEeecC-------CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHH
Q 030074 22 KLVLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~L~~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l 94 (183)
+++||++. .||+|+|++++|+++|++|+.+.++. .+.||.|++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 36899887 68999999999999999999987753 25789999999999999999999999999
Q ss_pred HHhCC
Q 030074 95 EEKYP 99 (183)
Q Consensus 95 ~~~~~ 99 (183)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 50
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.73 E-value=3.4e-17 Score=102.51 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=61.9
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhh-----CCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEEL-----NPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~-----~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
+++||+++.+++|++++++|+++|++|+.+.++.. ++|.+. .|.|++|+|++||.+++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 36899999999999999999999999999988742 233222 3689999999999999999999999999
Q ss_pred hCC
Q 030074 97 KYP 99 (183)
Q Consensus 97 ~~~ 99 (183)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 875
No 51
>PLN02907 glutamate-tRNA ligase
Probab=99.72 E-value=1.3e-16 Score=135.23 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=98.9
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~~ 101 (183)
++||+.+ ++.+.++.++|++.|++|+.+. .+|.|++|+|+ ++|.+++||.||++||++.+++.
T Consensus 3 ~kLy~~~-~S~~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPP-DSPPLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECC-CCChHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 7899655 4568889999999999999864 15899999999 68999999999999999999887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCccee
Q 030074 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYM 181 (183)
Q Consensus 102 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 181 (183)
.|+|. ++.+++++++|+.++..... . ..+...+..||.+|+. ++||+|+++|+
T Consensus 67 ~L~p~-d~~erAqV~qWL~~~~~~~~-----------------~-------~~l~~~L~~LE~~L~~--rtYLvGd~lTL 119 (722)
T PLN02907 67 GFYGQ-DAFESSQVDEWLDYAPTFSS-----------------G-------SEFENACEYVDGYLAS--RTFLVGYSLTI 119 (722)
T ss_pred CCCCC-CHHHHHHHHHHHHHHhhccc-----------------H-------HHHHHHHHHHHHHhcc--CCeecCCCCCH
Confidence 89998 99999999999998754210 0 1345678999999988 89999999998
Q ss_pred c
Q 030074 182 V 182 (183)
Q Consensus 182 a 182 (183)
|
T Consensus 120 A 120 (722)
T PLN02907 120 A 120 (722)
T ss_pred H
Confidence 7
No 52
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.72 E-value=4.3e-17 Score=99.71 Aligned_cols=68 Identities=57% Similarity=0.758 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHhCCceEEEEeeC-CCCCCCChhhhhhCCCCccceEEe-CCeeEEehHHHHHHHHHh
Q 030074 30 QSSCSWRVRFALKLKGLIYEYKAVDL-SKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~~~~-~~~~~~~~~~~~~~p~g~~P~L~~-~g~~l~es~aI~~~l~~~ 97 (183)
.|||++|++++|+++|++|+.+.+.. .++..+.++|.+.||.|++|+|++ +|.++.||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988854 234456689999999999999995 899999999999999873
No 53
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=1.1e-16 Score=99.67 Aligned_cols=72 Identities=26% Similarity=0.328 Sum_probs=61.8
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeC----CeeEEehHHHHHHHHHh
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG----DVVVSDSYAILLYLEEK 97 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~----g~~l~es~aI~~~l~~~ 97 (183)
+++||++..||+|++++++|+++|++|+.+.+++.. .++ ...||.+++|+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 489999999999999999999999999999876431 223 356999999999944 78999999999999987
Q ss_pred C
Q 030074 98 Y 98 (183)
Q Consensus 98 ~ 98 (183)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 54
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.70 E-value=1.1e-16 Score=98.65 Aligned_cols=68 Identities=40% Similarity=0.418 Sum_probs=61.3
Q ss_pred ecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 27 SYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 27 ~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
+...|+++++++++|+++|++|+.+.+++..+ ...++|++.||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45689999999999999999999999987654 356899999999999999999999999999999984
No 55
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=7.6e-16 Score=93.44 Aligned_cols=71 Identities=55% Similarity=0.755 Sum_probs=62.8
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
++||++..||+|++++++|+++|++|+.+.++..... ..++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999988865432 2257889999999999999999999999999984
No 56
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.62 E-value=2.9e-15 Score=92.04 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=56.8
Q ss_pred EEeecC-------CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 24 VLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 24 ~L~~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
+||.++ .||+|++++++|+++|++|+.+.++.. ..||.|++|+|+++|.+++||.+|++||++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 567665 899999999999999999999988742 168999999999999999999999999987
Q ss_pred h
Q 030074 97 K 97 (183)
Q Consensus 97 ~ 97 (183)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 4
No 57
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1e-14 Score=101.45 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=96.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCCC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~~ 101 (183)
|+||-|..||||-|+||++.+++||++......++.+.. .++-...+||+|+ ++|..+.||..|++|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp----~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP----IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh----hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 589999999999999999999999999998876653321 2233466899999 99999999999999999998754
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCch---------------------HHHHHHHHHHHHHHH
Q 030074 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPD---------------------ERLLWVQTHIEKGFL 160 (183)
Q Consensus 102 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~ 160 (183)
-|-.+ -+..+..|+..+......+..+++.+........+ .....+.+++...++
T Consensus 77 ~lt~~----~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~ 152 (215)
T COG2999 77 LLTGK----VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLR 152 (215)
T ss_pred hhccC----cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHH
Confidence 44444 24566777776666655544444332211111111 113456677777888
Q ss_pred HHHHHHhc
Q 030074 161 ALEKLLID 168 (183)
Q Consensus 161 ~le~~L~~ 168 (183)
.+++.+.+
T Consensus 153 ~l~~Li~~ 160 (215)
T COG2999 153 ALDKLIVG 160 (215)
T ss_pred HHHHHhcC
Confidence 88887765
No 58
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.47 E-value=4.9e-13 Score=99.45 Aligned_cols=69 Identities=28% Similarity=0.328 Sum_probs=58.1
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCC-CCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
.++||.|..||||.|||.+|.+.||+|+.++|++.. .+.+ -+-..+||+|...|+.+.||.+|+.-|..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk------~SsykKVPil~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIK------WSSYKKVPILLIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhcc------ccccccccEEEeccceechhHHHHHHHHH
Confidence 689999999999999999999999999999999763 2222 23567899999777789999999987743
No 59
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.42 E-value=9.4e-13 Score=80.56 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=50.0
Q ss_pred CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHh
Q 030074 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 29 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~ 97 (183)
+.+++|.+++++|++.|+||+.+.. ..+ . ..+|.|++|+|++||.+++||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~~-----~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--ANA-----E--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CCc-----c--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 5688999999999999999998832 111 1 1467899999999999999999999999864
No 60
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-11 Score=89.98 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=102.5
Q ss_pred ceEEeecC-------CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHH
Q 030074 22 KLVLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~L~~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l 94 (183)
.+-||.++ .||||.++...|+..+|||+.+.-.+ ...++.|++|.++-||+-+.||..|..+|
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~----------~~rSr~G~lPFIELNGe~iaDS~~I~~~L 114 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL----------KRRSRNGTLPFIELNGEHIADSDLIEDRL 114 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc----------eeeccCCCcceEEeCCeeccccHHHHHHH
Confidence 46677775 68999999999999999999875432 13467899999999999999999999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHH------------------------HHHHHH-----Hhhc---
Q 030074 95 EEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHML------------------------SLLKYI-----EDKF--- 142 (183)
Q Consensus 95 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-----~~~~--- 142 (183)
.+.+.-+..+ .+.++++..++...++..+.-.... .+.++. .+..
T Consensus 115 ~~hf~~~~~L---~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r 191 (281)
T KOG4244|consen 115 RKHFKIPDDL---SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKR 191 (281)
T ss_pred HHHcCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHH
Confidence 9988643323 3467888887776666443211111 000111 0000
Q ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 143 ----GPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 143 ----~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
..+-..++..+-+.+.|..++..|+. ++||+|+++|-+
T Consensus 192 ~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~--KkflfGdkit~~ 233 (281)
T KOG4244|consen 192 STGAIGDFESAEIDELLHRDLRAISDYLGD--KKFLFGDKITPA 233 (281)
T ss_pred hhccccCcCHHHHHHHHHHHHHHHHHHhCC--CccccCCCCCcc
Confidence 00011234667788999999999998 999999999854
No 61
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.22 E-value=9.1e-11 Score=72.02 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=49.7
Q ss_pred CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHh
Q 030074 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~ 97 (183)
.||+|.++.+.|+++|++|+.+...- ....|.|++|+|+++|+.+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n----------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN----------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC----------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 67999999999999999998874321 12368999999999999999999999999875
No 62
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.22 E-value=7.2e-11 Score=73.71 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=62.9
Q ss_pred CCCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 19 SSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 19 ~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
...+++||+.+.||+|.+++.+|...|++|+.+.++-. ....++...++...+|++..||..+.++..|..||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 34579999999999999999999999999999877533 223456666778899999999999999999999984
No 63
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-10 Score=84.82 Aligned_cols=155 Identities=21% Similarity=0.238 Sum_probs=110.1
Q ss_pred cCCCCceEEeecCCChhhHHHHHHHHHhCCc--eEEEEeeCCC---CCCCCh------------------hhhhhCC---
Q 030074 17 SSSSSKLVLYSYWQSSCSWRVRFALKLKGLI--YEYKAVDLSK---GEQFSP------------------EFEELNP--- 70 (183)
Q Consensus 17 ~~~~~~~~L~~~~~s~~~~~v~~~L~~~gi~--~~~~~~~~~~---~~~~~~------------------~~~~~~p--- 70 (183)
..+..++.||....|||++|..++-+++|++ .....+.+.. |..-.+ -|....|
T Consensus 46 ~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~Ys 125 (324)
T COG0435 46 KAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYS 125 (324)
T ss_pred CCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCC
Confidence 3466789999999999999999999999996 3333444321 111111 1112223
Q ss_pred -CCccceEEeC--Ce-eEEehHHHHHHHHHhCC-----CCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhh
Q 030074 71 -LHFVPVLVDG--DV-VVSDSYAILLYLEEKYP-----QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDK 141 (183)
Q Consensus 71 -~g~~P~L~~~--g~-~l~es~aI~~~l~~~~~-----~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (183)
.-.||+|.|- .. +--||..|++.+...+. ...|+|+ ..|.+++.+.+++...+-.-+ +..+.
T Consensus 126 gRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~---~Lr~eId~~n~~Iy~~vNNGV------Yk~GF 196 (324)
T COG0435 126 GRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE---ALRTEIDELNKWIYDTVNNGV------YKAGF 196 (324)
T ss_pred CceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH---HHHHHHHHHHhhhcccccCce------eeecc
Confidence 2369999954 33 33799999999887653 3679998 679999999999987764422 11122
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 142 FGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
...+++-++..+.+-..|+.||..|++ ++|++||++|-|
T Consensus 197 A~tq~aYeea~~~lF~~Ld~lE~~L~~--~ryl~Gd~lTEA 235 (324)
T COG0435 197 ATTQEAYEEAVKKLFEALDKLEQILSE--RRYLTGDQLTEA 235 (324)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhc--CeeeccccchHh
Confidence 345666677778888999999999999 999999999865
No 64
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.7e-09 Score=77.36 Aligned_cols=139 Identities=19% Similarity=0.250 Sum_probs=104.5
Q ss_pred CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCCCCCCCCCCCH
Q 030074 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAADP 109 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~~~~l~p~~~~ 109 (183)
...-|.+|...|+++++||..+..+ +.+| ++|.|++|.|..|..+++|-.+|..+++.+. ..|-...+.
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~--~~l~s~lsE 101 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKG--VTLTSWLSE 101 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhc--cchhhhhhh
Confidence 4567999999999999999987543 2345 5799999999999999999999999999986 346555567
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHH--------------------------HHHHhh--------cC-chHHHHHHHHH
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLL--------------------------KYIEDK--------FG-PDERLLWVQTH 154 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~--------~~-~~~~~~~~~~~ 154 (183)
.+++.++..++.++..+.-+=....+ ++.+.. .. ++...+.+.+.
T Consensus 102 ~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~ 181 (257)
T KOG3027|consen 102 DQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQ 181 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 88999999888887765332111111 011110 11 23347788899
Q ss_pred HHHHHHHHHHHHhccCCceeecCccee
Q 030074 155 IEKGFLALEKLLIDFAAKYATGEDVYM 181 (183)
Q Consensus 155 ~~~~l~~le~~L~~~~~~~l~G~~~T~ 181 (183)
+...++.|+.+|+. .+||.|++||-
T Consensus 182 vdkc~~aLsa~L~~--q~yf~g~~P~e 206 (257)
T KOG3027|consen 182 VDKCCRALSAQLGS--QPYFTGDQPTE 206 (257)
T ss_pred HHHHHHHHHHHhcC--CCccCCCCccH
Confidence 99999999999998 99999999873
No 65
>PRK10638 glutaredoxin 3; Provisional
Probab=99.14 E-value=2.3e-10 Score=72.13 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=61.9
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
+.++||+.+.||+|++++.+|+..|++|+.+.++... ...+++...++..++|+++.+|..+.+...+..+-.
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 3799999999999999999999999999998776432 234677888999999999999999999988777643
No 66
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.05 E-value=1.6e-09 Score=66.32 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=59.8
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
+++||....||+|.+++-+|...|++|+.+.++-.. ....+........+|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 589999999999999999999999999998776432 22344455677789999999999999999999974
No 67
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.3e-09 Score=77.89 Aligned_cols=155 Identities=20% Similarity=0.172 Sum_probs=104.8
Q ss_pred CCCceEEeecCCChhhHHHHHHHHHhCCc--eEEEEeeC-C--CCCCCCh--------------------------hhhh
Q 030074 19 SSSKLVLYSYWQSSCSWRVRFALKLKGLI--YEYKAVDL-S--KGEQFSP--------------------------EFEE 67 (183)
Q Consensus 19 ~~~~~~L~~~~~s~~~~~v~~~L~~~gi~--~~~~~~~~-~--~~~~~~~--------------------------~~~~ 67 (183)
+..++.||....|||++|+.+++.++|++ .....+.+ . +|..-.+ -|..
T Consensus 34 akgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~ 113 (319)
T KOG2903|consen 34 AKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYI 113 (319)
T ss_pred CCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhh
Confidence 34789999999999999999999999985 22222333 1 1110000 0111
Q ss_pred hCC----CCccceEEeCC---eeEEehHHHHHHHH---------HhCCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHH
Q 030074 68 LNP----LHFVPVLVDGD---VVVSDSYAILLYLE---------EKYPQRALLPAADPQQRALNLQAASIISSSMQPLHM 131 (183)
Q Consensus 68 ~~p----~g~~P~L~~~g---~~l~es~aI~~~l~---------~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (183)
..| .-.||||-|-. .+--||..|++.+. +..+.-.|+|. ..+++++.+-.|+...+-.-+
T Consensus 114 ~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~---~L~~~Ide~N~wvy~~INNGV- 189 (319)
T KOG2903|consen 114 ASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS---SLRAQIDETNSWVYDKINNGV- 189 (319)
T ss_pred cCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH---HHHHHHhhhhceecccccCce-
Confidence 122 22699999653 34589999999999 33344678887 679999999999887764422
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 132 LSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+.-+....++.-+.....+-+.|+.+|..|+++-+.|++|+++|.|
T Consensus 190 -----Yk~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTea 235 (319)
T KOG2903|consen 190 -----YKCGFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEA 235 (319)
T ss_pred -----eeeccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchh
Confidence 1111223455556667778889999999999954459999999975
No 68
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.91 E-value=5.6e-09 Score=64.07 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=58.0
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~ 92 (183)
+++||+.+.||+|++++.+|...||+|+.+.+.-. ....+++.+.++...+|++..+|..+.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999876532 2345678888899999999999998887766554
No 69
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.82 E-value=1.6e-08 Score=61.55 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=55.6
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeE--EehHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV--SDSYAILLYL 94 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l--~es~aI~~~l 94 (183)
+++||+..+||+|++++.+|...|++|..+.++.. ....+++.+.++...+|+++.+|..+ ++...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 47999999999999999999999999988766532 12234567778889999999888877 5556665554
No 70
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=9.3e-07 Score=67.38 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=99.7
Q ss_pred CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE-eCCeeEEehHHHHHHHHHhCCCCCCCCCCC
Q 030074 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~-~~g~~l~es~aI~~~l~~~~~~~~l~p~~~ 108 (183)
.++-|.++.+++.+++-|.......- ++ ..|.|++|+|+ ++|..+++-.-|..+|.....+-.+-+...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-------~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-------PW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-------CC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 57889999999999997666654431 12 35789999999 778999999999999998533333444323
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHH-----------HHH-------------------------hhcCchHHHHHHH
Q 030074 109 PQQRALNLQAASIISSSMQPLHMLSLLK-----------YIE-------------------------DKFGPDERLLWVQ 152 (183)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------------------------~~~~~~~~~~~~~ 152 (183)
..+++....|.++++..+.++...-.+- ++. ......+..+...
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHH
Confidence 5778999999999999888766543221 000 0111223345556
Q ss_pred HHHHHHHHHHHHHHhccCCceeecCcce
Q 030074 153 THIEKGFLALEKLLIDFAAKYATGEDVY 180 (183)
Q Consensus 153 ~~~~~~l~~le~~L~~~~~~~l~G~~~T 180 (183)
....+++..|+..|+. ++|++||++|
T Consensus 166 ~~Aska~~~LS~~Lgs--~kffFgd~ps 191 (313)
T KOG3028|consen 166 KDASKALNLLSTLLGS--KKFFFGDKPS 191 (313)
T ss_pred HHHHHHHHHHHHHhcC--ceEeeCCCCc
Confidence 6677889999999998 9999999887
No 71
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.80 E-value=2.5e-08 Score=60.32 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=58.6
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
+++||+...||+|++++.+|..++++|+.+.+... .....++...++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 47899999999999999999999999998766532 22345667788899999999999999999888764
No 72
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.78 E-value=2.1e-08 Score=60.94 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=52.6
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEeh
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS 87 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es 87 (183)
.+++|+..+||+|.+++.+|...|++|+.+.++.. ....+++.+.+|.+.+|+|+++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 37899999999999999999999999998877542 23345677888999999999888777554
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.71 E-value=5.8e-08 Score=60.74 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=47.9
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~ 85 (183)
+++||+.+.||+|.+++-+|..+||+|+.+.++-. ....+....++...+|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 68999999999999999999999999999877632 11122234468889999998776654
No 74
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.8e-08 Score=59.78 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=55.7
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
.+++|..+.||||.+++-+|..+|++|+.+.++...++...+.....++..++|+++.||..+.....+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 589999999999999999999999999999887654322223333555899999999888877665444444
No 75
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.67 E-value=1.1e-07 Score=58.47 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=56.0
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCC-ccceEEeCCeeEEehHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLH-FVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g-~~P~L~~~g~~l~es~aI~~~l 94 (183)
+++||+.+.||+|.+++-+|+..|++|+.+.++.. . ....++....... .+|+++.+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~-~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD-P-ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC-H-HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 47899999999999999999999999999877643 1 2223444444444 8999999999999998888764
No 76
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.65 E-value=1.2e-07 Score=58.45 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=53.3
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhC-CCCccceEE-eCCeeEEeh--HHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN-PLHFVPVLV-DGDVVVSDS--YAILLYL 94 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p~g~~P~L~-~~g~~l~es--~aI~~~l 94 (183)
.++||+..+||+|++++-+|...|++|+.+.++- .......+...| +...+|+++ ++|..+.+. ..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~--~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEE--DEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcC--CHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 3789999999999999999999999998766542 223345556676 889999997 678777654 3444443
No 77
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.63 E-value=1.7e-07 Score=62.75 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHhh-------cCchHHHHHHHHHHHHHHHHHHHHHhccCCceeec
Q 030074 105 PAADPQQRALNLQAASIISSSMQPLHMLSL-LKYIEDK-------FGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATG 176 (183)
Q Consensus 105 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 176 (183)
|. ++.+++++++|+.+....+.+.+.... ....... ...+...+.....+.+.|..||++|++ ++|++|
T Consensus 2 ~~-~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 78 (119)
T cd03189 2 PP-DTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVG 78 (119)
T ss_pred CC-CHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCC
Confidence 45 889999999999999988887654322 2111110 122344566778899999999999988 899999
Q ss_pred Ccceec
Q 030074 177 EDVYMV 182 (183)
Q Consensus 177 ~~~T~a 182 (183)
+++|+|
T Consensus 79 d~~t~A 84 (119)
T cd03189 79 DKLTAA 84 (119)
T ss_pred CCCCHH
Confidence 999986
No 78
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.53 E-value=3.8e-07 Score=56.64 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=58.3
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ....++........+|+++.+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999886432 2234555666678899999999999888887776543
No 79
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.52 E-value=4.5e-07 Score=58.95 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCC-CCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG-EQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 18 ~~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
.+.+++++|..+.||+|.+++-+|...|++|+.+.++-... ......+...+....+|++..+|..+.+...+...
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 34567999999999999999999999999999888874321 11122344556778999999999999888777764
No 80
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.50 E-value=9.1e-07 Score=55.80 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=60.0
Q ss_pred ceEEeecCCChhhHHHHHHHHH-----hCCceEEEEeeCCCCCCCChhhhhhCC--CCccceEEeCCeeEEehHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFEELNP--LHFVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~~~~p--~g~~P~L~~~g~~l~es~aI~~~l 94 (183)
.+++|+.+.||+|.+++-+|.. .|++|+.+.++-.. ....++..... ...+|++..||..+.+...|..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 5899999999999999999999 89999988776321 11223433322 257999999999999999999999
Q ss_pred HHhCC
Q 030074 95 EEKYP 99 (183)
Q Consensus 95 ~~~~~ 99 (183)
.+.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 88764
No 81
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.48 E-value=6.2e-07 Score=59.37 Aligned_cols=70 Identities=13% Similarity=0.018 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+++++++|+.|....+.+.+..............+...+...+.+.+.++.+|+.|++ ++|++|+++|+|
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~a 70 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIA 70 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCee
Confidence 4789999999999998876543322111122234556777889999999999999987 889999999986
No 82
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.46 E-value=8.3e-07 Score=59.13 Aligned_cols=73 Identities=11% Similarity=-0.067 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHH--Hh----hcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCccee
Q 030074 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYI--ED----KFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYM 181 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 181 (183)
|+.+++++++|+.|++..+.+.+...+.... .+ ...++...+...+.+.+.|..||++|++ ++|++|+++|+
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~gd~~t~ 78 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAG--SPYVAGDRFTI 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCCH
Confidence 4678999999999998887766554332211 01 1234556788888999999999999987 78999999998
Q ss_pred c
Q 030074 182 V 182 (183)
Q Consensus 182 a 182 (183)
|
T Consensus 79 a 79 (117)
T cd03182 79 A 79 (117)
T ss_pred H
Confidence 6
No 83
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.44 E-value=1e-06 Score=59.18 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhh-cC-chHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDK-FG-PDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+++++++|+.++.+.+.+............. .. .+...+...+.+.+.|..||++|++++++|++|+++|+|
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~A 76 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLA 76 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHH
Confidence 47999999999999888765333222222111 11 233445566778999999999998533579999999986
No 84
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.43 E-value=1.4e-06 Score=54.33 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCC-CCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG-EQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
++++|+...||+|.+++-+|...+++|+.+.++.... ......+.+.+....+|++..+|..+.+...|..+...
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3789999999999999999999999999998886532 11122344556667899999999999999999887654
No 85
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.43 E-value=1.2e-06 Score=58.89 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+++++++|+.++...+.+.+...+.........++...+...+.+.+.|+.||+.|+. ++|++|+++|+|
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~sia 70 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLA 70 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHH
Confidence 4788999999999988887655443332222234456778889999999999999997 789999999986
No 86
>PHA03050 glutaredoxin; Provisional
Probab=98.43 E-value=1.5e-06 Score=57.40 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCCceEEeecCCChhhHHHHHHHHHhCC---ceEEEEeeCCC-CCCCChhhhhhCCCCccceEEeCCeeEEehHHHHH
Q 030074 19 SSSKLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 19 ~~~~~~L~~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~-~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~ 92 (183)
..+++++|..++||||.+++-+|...|+ +|+.+.++-.. +.....++.+.+....||++..+|..+.+...+..
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 3467999999999999999999999999 68777766321 11224566677777899999999999888877766
No 87
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.42 E-value=8.8e-07 Score=54.07 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=43.8
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCe
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~ 82 (183)
++||+.+.||+|++++-+|...|++|+.+.++-.. ...+++ ...+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECCC
Confidence 58999999999999999999999999998776321 122233 3456778999997554
No 88
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.41 E-value=1.5e-06 Score=57.10 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhh--cCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDK--FGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|+++++|+.+..+.+.+.+........... ...+...+...+.+.+.|+.||++|++ ++|++|+++|+|
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~a 73 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLA 73 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHH
Confidence 4889999999999998887655433222111 123455677888999999999999987 789999999986
No 89
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.39 E-value=2.5e-06 Score=53.92 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=56.4
Q ss_pred eEEeecCCChhhHHHHHHHHHhC-----CceEEEEeeCCCCCCCChhhhhhCC--CCccceEEeCCeeEEehHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKG-----LIYEYKAVDLSKGEQFSPEFEELNP--LHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~p--~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
+++|+.+.||+|.+++-+|...+ ++|+.+.+.-. + ....++..... ...+|++..||..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~-~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE-G-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC-H-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 55666655422 1 11233443333 2589999999999999999999988
Q ss_pred HhCC
Q 030074 96 EKYP 99 (183)
Q Consensus 96 ~~~~ 99 (183)
+.+.
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8653
No 90
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.35 E-value=6.4e-07 Score=52.62 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=48.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeE
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV 84 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l 84 (183)
+++|+...||+|.+++-+|...|++|+.+.++... ...+++........+|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999887542 2334555555778999999888754
No 91
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.35 E-value=1e-06 Score=58.89 Aligned_cols=69 Identities=14% Similarity=-0.007 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
|+..++++++|+.+.+..+.+.+....+...... +..+...+.+.+.+..||++|++ ++|++|+++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~le~~L~~--~~yl~Gd~~tlA 71 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPE----ESEEEYRQQAEAFLKDLEARLQQ--HSYLLGDKPSLA 71 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCc----ccHHHHHHHHHHHHHHHHHHHcc--CCccCCCCccHH
Confidence 7889999999999999999887665433322221 13567888999999999999998 789999999986
No 92
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.33 E-value=1.8e-06 Score=56.62 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+|++++.|+.+++..+.+.+..... . .++..+...+.+.+.|..||++|++ ++|++|+++|+|
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~a 65 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----G---RKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLV 65 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----C---cHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHH
Confidence 57999999999999887776533221 1 1444667888899999999999987 899999999986
No 93
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.33 E-value=9.5e-07 Score=57.10 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=49.8
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccC
Q 030074 91 LLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFA 170 (183)
Q Consensus 91 ~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~ 170 (183)
+|||++.. .|+|+ ++.++.+++.|++.....+.. ...+.+.+.+..+|++|++
T Consensus 1 ~r~~~~~~---~~~~~-~~~~~~~vd~~~d~~~~~l~~---------------------~~~~~~~~~l~~le~~L~~-- 53 (96)
T cd03200 1 ARFLYRLL---GPAPN-APNAATNIDSWVDTAIFQLAE---------------------GSSKEKAAVLRALNSALGR-- 53 (96)
T ss_pred CchHHHHh---cccCC-CchHHHHHHHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHcC--
Confidence 47899883 39999 999999999999965432210 1334455778889999988
Q ss_pred CceeecCcceec
Q 030074 171 AKYATGEDVYMV 182 (183)
Q Consensus 171 ~~~l~G~~~T~a 182 (183)
++|++|+++|+|
T Consensus 54 ~~fl~Gd~~tiA 65 (96)
T cd03200 54 SPWLVGSEFTVA 65 (96)
T ss_pred CCccCCCCCCHH
Confidence 899999999986
No 94
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.32 E-value=5.3e-06 Score=50.53 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHhCCc---eEEEEeeCCCCCCCChhhhhhCCCCccceEEe-CCeeEEehHHHHHHH
Q 030074 30 QSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYL 94 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~-~g~~l~es~aI~~~l 94 (183)
.+|-|.++.++|+.++.+ |+.+...- + .++|.|++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-------P---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-------C---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 679999999999999999 77665431 1 1479999999998 999999999999997
No 95
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.30 E-value=1.2e-06 Score=57.92 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHH--hhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIE--DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|+++++|+.|..+.+.+.+......... .....+...+...+.+.+.+..||+.|++ ++|++|+++|+|
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~a 73 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVA 73 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchH
Confidence 58999999999999888766433222110 01112444677888899999999999987 889999999986
No 96
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.28 E-value=3.1e-06 Score=56.36 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHH-HHHH---hhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLL-KYIE---DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|+++.+|+.|....+.+.+..... .... +...+++..+...+.+.+.+..||++|++ ++|++|+++|+|
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~a 75 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLA 75 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHH
Confidence 5889999999988888776543222 1111 11234555667788999999999999987 899999999986
No 97
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.26 E-value=5.4e-06 Score=53.67 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCCceEEeec-----CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHH
Q 030074 18 SSSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 18 ~~~~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~ 92 (183)
.+.+++.+|.. +.||||.+++-+|...|++|+.+.+. .......++...+....+|.+..+|..+.+...+..
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~--~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL--EDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC--CCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 44567899965 78999999999999999999987664 212223345566667799999999998888877776
Q ss_pred HH
Q 030074 93 YL 94 (183)
Q Consensus 93 ~l 94 (183)
..
T Consensus 87 l~ 88 (97)
T TIGR00365 87 MY 88 (97)
T ss_pred HH
Confidence 43
No 98
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.23 E-value=3.8e-06 Score=56.65 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+|+++++|+.+++..+.+.+...+. . .+...+...+.+.+.+..||++|++ ++|++|+++|+|
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~A 65 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA----A---KGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYV 65 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc----c---chHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchH
Confidence 47899999999998888776543321 1 1344566788899999999999987 799999999986
No 99
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.20 E-value=8.9e-06 Score=51.87 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=58.0
Q ss_pred CCCceEEeec-----CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 19 ~~~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
...++++|.. +.||||.+++-+|...|++|+.+.+.-. .....++.+.+....+|++..+|..+.+...+...
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 3457889965 5899999999999999999999987532 12234555666677899999999999888888775
Q ss_pred H
Q 030074 94 L 94 (183)
Q Consensus 94 l 94 (183)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 3
No 100
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.15 E-value=1.1e-05 Score=50.32 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=57.1
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCc--eEEEEeeCCCCC-CCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLI--YEYKAVDLSKGE-QFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~--~~~~~~~~~~~~-~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~ 96 (183)
+++|+.++||+|.+++-+|...+++ |+.+.++..... .....+........+|++..+|..+.++..+..+...
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888877754211 1112344555667899999999999999888887653
No 101
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.15 E-value=7.3e-06 Score=54.76 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+++++++|+.|....+.+.+...+....... +...+...+.+.+.|..||++|++ ++|++|+++|+|
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~a 68 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG---AEPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIA 68 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHH
Confidence 5889999999998888776654433322111 123455677899999999999987 789999999976
No 102
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.14 E-value=1.1e-05 Score=55.86 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
..|+++++|++|....+.+.... ... ..+++..+...+.+.+.|..||++|++ ++|++|+++|+|
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlA 67 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYK----AGF--ATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEA 67 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH----Hhh--ccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHH
Confidence 45888999999999887665422 111 234566777888999999999999987 899999999986
No 103
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.10 E-value=2.4e-06 Score=55.65 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHH--HHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLK--YIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|+++++|+.+..+.+.+.+...... +......+++..+...+.+.+.++.||+.|++ ++|++|+++|+|
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~sla 73 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIA 73 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHH
Confidence 58899999999888877654321111 11122344566778899999999999999977 789999999986
No 104
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=97.95 E-value=2.2e-05 Score=52.96 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|++.+.|.+++...+.+..... .. ++..+...+.+.+.|..+|+.|++++++|++|+++|+|
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~a 64 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLL-----GA----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMV 64 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHH-----hc----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHH
Confidence 48899999999975544433221 11 33445678889999999999998655799999999986
No 105
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=97.94 E-value=3.3e-05 Score=52.14 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHH-----HHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 112 RALNLQAASIISSSMQPLHMLSLLKY-----IEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
++++++|+.|....+.+.+....... .......++..+...+.+.+.+..+|++|.+ +++|++|+++|+|
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~A 76 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIA 76 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHH
Confidence 56789999999888766443321111 1112234566778888999999999998533 2689999999986
No 106
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=97.80 E-value=9.5e-05 Score=48.06 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
++++++.+++..++.........+ ... +....+...+...+.+.+.+..||+.|.+.+++|++|+++|+|
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~a 71 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFY-EKD-GEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWA 71 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-cCc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHH
Confidence 578889998887665554433221 110 0011355677788889999999999997644689999999986
No 107
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=97.78 E-value=0.00011 Score=49.70 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhcc-CCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDF-AAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~T~a 182 (183)
.|+++++++...+.+.......... . ..+...+...+.+.+.|..||+.|+++ +++|++|+++|+|
T Consensus 2 ~e~~~vd~~~~~~~d~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~A 68 (126)
T cd03210 2 KEAALIDMVNDGVEDLRLKYVRMIY-----Q--NYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFA 68 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-----C--cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHH
Confidence 3678888888877655443322111 1 113344566777999999999999864 4789999999986
No 108
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=97.76 E-value=9.2e-05 Score=50.97 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchH-HHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDE-RLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+++.++++++.+.+.........+ . ......+ ..+...+.+.+.|..||++|.+++++|++|+++|+|
T Consensus 2 ~e~a~iD~i~~~v~D~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~A 71 (137)
T cd03208 2 KERALIDMYVEGTADLMEMILMLPF---L-PPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRA 71 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcc---C-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHH
Confidence 3678889988888776655432211 1 1111112 234445567899999999998444789999999986
No 109
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.74 E-value=0.00014 Score=50.49 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=54.1
Q ss_pred ceEEeecC------CChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCC----CCccceEEeCCeeEEehHHHH
Q 030074 22 KLVLYSYW------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNP----LHFVPVLVDGDVVVSDSYAIL 91 (183)
Q Consensus 22 ~~~L~~~~------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p----~g~~P~L~~~g~~l~es~aI~ 91 (183)
+++||... .+|+|.+++-+|+.++|+|+++.++... ...+++.+... ...+|.+..+|..+.+...+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~ 78 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVL 78 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHH
Confidence 47889877 7999999999999999999998776432 22334444433 368999999999998888877
Q ss_pred HH
Q 030074 92 LY 93 (183)
Q Consensus 92 ~~ 93 (183)
+.
T Consensus 79 ~L 80 (147)
T cd03031 79 RL 80 (147)
T ss_pred HH
Confidence 74
No 110
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=97.73 E-value=2.6e-05 Score=49.92 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=45.0
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+.|+.++...+.+.+..............++..+...+.+.+.++.||++|++ ++|++|+++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~g~~~t~a 66 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAG--RPYLAGDRFSLA 66 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCcCHH
Confidence 45677777766554433322111111224566788889999999999999988 789999999986
No 111
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=97.66 E-value=6.8e-05 Score=45.01 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 146 ERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 146 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
...+..++.+.+.++.||++|+. ++|++|+++|+|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~a 36 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFLFGDRPSLA 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBTTBSS--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCCCCHH
Confidence 45678899999999999999999 779999999986
No 112
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.64 E-value=0.00026 Score=57.55 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=53.3
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhh---------hhCCCCccceEEeCCeeEEehHHHH
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE---------ELNPLHFVPVLVDGDVVVSDSYAIL 91 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~---------~~~p~g~~P~L~~~g~~l~es~aI~ 91 (183)
.++++|..+.||+|.+++-+|...||+|+.+.++-. ....++. .......+|++..||..+.+-..+.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~---~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD---VKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC---hhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHH
Confidence 469999999999999999999999999999888622 1111221 1235668999999999888887776
Q ss_pred H
Q 030074 92 L 92 (183)
Q Consensus 92 ~ 92 (183)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 113
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00033 Score=45.73 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=61.1
Q ss_pred cCCCCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCC-CCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 17 SSSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 17 ~~~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
+.+..++.+|.-..||+|.+++-+|...++++..++++-.. +......+.+..-..++|.+..+|.-+.....+..+
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 45566789999999999999999999999999999887553 222233444556667999999999999888888775
No 114
>PRK10824 glutaredoxin-4; Provisional
Probab=97.62 E-value=0.00031 Score=46.76 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCCceEEeec-----CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 19 ~~~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
...++.+|.. +.||||.+++-+|...|++|..+.+.-. ......+...+....+|.+..+|..+.+...+...
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 3457888876 4899999999999999999998776532 12334555667778999999999999888777764
No 115
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=97.61 E-value=0.00022 Score=47.79 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+++.++++++.+.+.......... .. ..+...+...+.+.+.+..||++|++ ++|++|+++|+|
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~a 65 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICY-----SP-DFEKLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYV 65 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhc-----Cc-chHHHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHH
Confidence 578888888888776544322211 11 12345566788899999999999987 789999999986
No 116
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.61 E-value=7.2e-05 Score=48.39 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=42.0
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
++|+.+..+.+.+............ .+...+...+.+.+.+..+|++|++ ++|++|+++|+|
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~a 63 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG---APLDKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIA 63 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHH
Confidence 4677777777754332222111111 1223456788899999999999988 789999999986
No 117
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=97.56 E-value=2.2e-05 Score=50.85 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 147 RLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 147 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
..+...+.+.+.+..++++|+.++++|++|++||+|
T Consensus 32 ~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~A 67 (99)
T PF14497_consen 32 SGDFSREELPKALKILEKHLAERGGDFLVGDKPTLA 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HH
T ss_pred hHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHH
Confidence 457788889999999999999965559999999986
No 118
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.52 E-value=8.9e-05 Score=49.33 Aligned_cols=70 Identities=20% Similarity=0.115 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHH-HHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 110 QQRALNLQAASIISSSMQPLHMLSL-LKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.++++++.|+.|+.+.+++...... ...... ...+...+...+.+.+.+..+|..|.+ +++||+| ++|+|
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiA 72 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAG-AKAEPLSEAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIA 72 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHH
Confidence 5799999999999999987622111 110111 111123456788889999999999974 3589999 59986
No 119
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.41 E-value=0.00055 Score=45.00 Aligned_cols=73 Identities=21% Similarity=0.096 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
|..+|++.+++..|+.+.+.++...+-..............+...+.+.+.+...+..|.. |++||+|+ .|+|
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIA 73 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIA 73 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS---HH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHH
Confidence 4678999999999999999887665444332222222333456677778888888888876 68999997 7765
No 120
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=97.36 E-value=0.00043 Score=44.05 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 144 PDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.++..+.....+.+.|..+|+.|++ ++|++|+++|+|
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~A 58 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIA 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchh
Confidence 3456788899999999999999996 999999999986
No 121
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.28 E-value=0.00011 Score=47.75 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 117 QAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|+.|..+.+.+.+...... . .++..+...+.+.+.+..||.+|++ ++|++|+++|+|
T Consensus 3 ~w~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~g~~~t~a 60 (103)
T cd03207 3 RWLFFYAGVVEPALIAKAMG----I--EEPARMAGFGSYDDVLAALEQALAK--GPYLLGERFTAA 60 (103)
T ss_pred eeeeeccccccHHHHHHHcC----C--CcchhhhhhhhHHHHHHHHHHHHcc--CCcccCCccCHH
Confidence 45556666666654432211 1 2334566778899999999999998 789999999986
No 122
>PTZ00062 glutaredoxin; Provisional
Probab=97.19 E-value=0.0018 Score=47.53 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCCceEEeec-----CCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHH
Q 030074 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 19 ~~~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~ 93 (183)
...++.||.. +.||||.+++-+|...|++|....+.- .+.....+...+....+|.+..+|+.+.+...+.+.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~--d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE--DPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC--CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 3457889966 589999999999999999999876652 222334555556667899999999998887777663
No 123
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.09 E-value=0.0041 Score=36.88 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=39.5
Q ss_pred ceEEeecCCChhhHHHHHHHHHh-----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~ 85 (183)
.+++|+.++||+|.+++-+|... +++|..+ +... .+++........+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~i--d~~~----~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMI--DAAE----FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEE--Eccc----CHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999988865 4555444 4321 233333344457999998877654
No 124
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.83 E-value=0.0041 Score=39.91 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHhcchhhHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 117 QAASIISSSMQPLHMLSLLKY-IEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+|.....+.+...+...+... ..+....+...+...+.+.+.|..+|++|++ ++| +++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~---d~~TlA 64 (98)
T cd03205 3 RLEALADGILDAAVAIVYERRLRPEEKRSQPWLERQRGKIERALDALEAELAK--LPL---DPLDLA 64 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHhhhChHHHHHHHHHHHHHHHHHHHhhhh--CCC---CCCCHH
Confidence 445555555555554443322 2233456677888999999999999999987 778 789876
No 125
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=96.81 E-value=0.0019 Score=40.57 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 149 LWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 149 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
....+.+.+.++.+|+.|++ ++|++|+++|+|
T Consensus 18 ~~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~a 49 (88)
T cd03193 18 REIYSLAKKDLKALSDLLGD--KKFFFGDKPTSL 49 (88)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCccCCCCCCHH
Confidence 36677899999999999998 889999999986
No 126
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=96.80 E-value=0.0057 Score=40.92 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhc-cCCceeecCcceec
Q 030074 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID-FAAKYATGEDVYMV 182 (183)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~T~a 182 (183)
|+..|+++++++.+.. .+... .+.+...+. . .+.+.+.++.||+.|+. .+++|++| ++|+|
T Consensus 1 d~~~ra~~~~~~~~~~-~~~~~---~~~~~~~~~--~-------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlA 62 (120)
T cd03203 1 DPAKREFADELLAYTD-AFTKA---LYSSLIKGD--P-------SAEAAAALDYIENALSKFDDGPFFLG-QFSLV 62 (120)
T ss_pred CHHHHHHHHHHHHHHH-HHHHH---HHHHHhcCC--c-------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHH
Confidence 4678999999999821 11111 111122111 1 22346677888888873 13789999 99986
No 127
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.79 E-value=0.0011 Score=44.06 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCceeecCcceec
Q 030074 148 LLWVQTHIEKGFLALEKLLIDF-AAKYATGEDVYMV 182 (183)
Q Consensus 148 ~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~T~a 182 (183)
.+...+.+.+.+..+|..|+.. +++|++|+ +|+|
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~A 73 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIA 73 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHH
Confidence 3456666777777888777533 47899999 9986
No 128
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=96.79 E-value=0.0017 Score=44.43 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhc--------------cCCceeecCcceec
Q 030074 144 PDERLLWVQTHIEKGFLALEKLLID--------------FAAKYATGEDVYMV 182 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~T~a 182 (183)
+++..+...+.+...|..||.+|++ .+++|++|+++|+|
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlA 75 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLA 75 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHH
Confidence 4566678889999999999999986 34789999999986
No 129
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.70 E-value=0.012 Score=37.60 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=50.0
Q ss_pred eEEeecCCCh------hhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhC----CCCccceEEeCCeeEEehHHHHH
Q 030074 23 LVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN----PLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 23 ~~L~~~~~s~------~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~----p~g~~P~L~~~g~~l~es~aI~~ 92 (183)
++||....++ .|++++.+|.-+||+|+.+.++... ....++.+.. +...+|.+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788766553 4788999999999999999887542 2334444443 34789999999999988866655
No 130
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.66 E-value=0.0034 Score=42.84 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=30.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.|++|++++-.|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999998774
No 131
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.65 E-value=0.003 Score=41.82 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.||+|++++-.|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999998765
No 132
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.009 Score=36.10 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=47.2
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCC--------CCCChhhh--hhCCCCccceEE-eCCeeEE
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG--------EQFSPEFE--ELNPLHFVPVLV-DGDVVVS 85 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~--------~~~~~~~~--~~~p~g~~P~L~-~~g~~l~ 85 (183)
++++||+...||-|....-.|+-.++.|+.+.+.-... ....++|- +.|.+--+|+|. +||+++.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 46699999999999999999999999999998754311 11223333 334455699988 7777765
No 133
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=96.63 E-value=0.005 Score=41.69 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 147 RLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 147 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
..+...+...+.|..|+..|++ ++||+|++||.|
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~ 87 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTEL 87 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHH
Confidence 4467788899999999999999 899999999964
No 134
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.62 E-value=0.0035 Score=41.53 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccC--------CceeecCcceec
Q 030074 144 PDERLLWVQTHIEKGFLALEKLLIDFA--------AKYATGEDVYMV 182 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~T~a 182 (183)
+.+.++.....+.+.|+.||.+|.++. ++|++|+++|+|
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlA 69 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLA 69 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHH
Confidence 456678899999999999999998631 269999999986
No 135
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.58 E-value=0.0045 Score=41.20 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=30.0
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999998764
No 136
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.57 E-value=0.0028 Score=42.76 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 148 LLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 148 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+...+.+.+.|+.+|++|++ ++|++|+++|+|
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~A 88 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYA 88 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchh
Confidence 456778899999999999988 899999999986
No 137
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.51 E-value=0.0046 Score=40.37 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=29.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.||+|++++-.|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999998775
No 138
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.28 E-value=0.0093 Score=40.71 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=30.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeC
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 55 (183)
+++|+.+.|+.|++++-.|...|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999999987753
No 139
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.20 E-value=0.0095 Score=40.72 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=30.2
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 78999999999999999999999999998775
No 140
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=96.16 E-value=0.014 Score=39.13 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 149 LWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 149 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
+...+.+.+.|..||..|++. ++|++||++|+|
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~TlA 61 (121)
T cd03201 29 DGTEQALLDELEALEDHLKEN-GPFINGEKISAV 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCHH
Confidence 445677899999999999852 689999999986
No 141
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.08 E-value=0.011 Score=38.67 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 57999999999999999999999999998764
No 142
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.04 E-value=0.011 Score=39.42 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=29.3
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.||+|++++-.|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988664
No 143
>PRK10026 arsenate reductase; Provisional
Probab=96.03 E-value=0.014 Score=40.27 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=31.2
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
+.+++|+++.|.-|++++-.|..+|++|+++.+-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 4699999999999999999999999999998764
No 144
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=95.99 E-value=0.0097 Score=40.91 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 146 ERLLWVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 146 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
...+...+...+.+..|++.|++ ++||+|+++|.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~ 94 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSL 94 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHH
Confidence 34567778888999999999998 899999999875
No 145
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.79 E-value=0.019 Score=38.16 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=29.8
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999998664
No 146
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.026 Score=37.69 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=30.4
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
+++||+.+.|.-|++++-.|+..||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 589999999999999999999999999988654
No 147
>PRK10853 putative reductase; Provisional
Probab=95.16 E-value=0.038 Score=37.00 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=29.7
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
+++|+.+.|.-|++++-.|...|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999988654
No 148
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.01 E-value=0.2 Score=30.54 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=38.6
Q ss_pred ceEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~ 82 (183)
.++||+.++||+|..+.-.|.. .+..+....++... .++.........+|+++.+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888753 34445666666532 233334444567999997665
No 149
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.87 E-value=0.055 Score=36.64 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=30.2
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
.++||+.+.|.-|++++-.|...|++|+++.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 478999999999999999999999999998654
No 150
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.64 E-value=0.1 Score=32.29 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=39.7
Q ss_pred ceEEeecCCChhhHHHHHHHHHh--CCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK--GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGD 81 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~--gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g 81 (183)
+++||+.+.|+-|..++-+|+.. ..+++...++... .+++....- -.+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 37899999999999999999965 4467777888763 344444432 4799999666
No 151
>PHA02125 thioredoxin-like protein
Probab=94.63 E-value=0.24 Score=30.02 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=36.0
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEe
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD 79 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~ 79 (183)
+.+|+.++|+.|.++.-.|+. +.+....++.. ...++....--..+|+++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 788999999999998888764 45666556543 2345555555667999983
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.22 E-value=0.56 Score=28.53 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred eEEeecCCChhhHHH----HHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEE
Q 030074 23 LVLYSYWQSSCSWRV----RFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v----~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~ 85 (183)
+.+|. ++||.|..+ .-++...|+.++.+.++- .++..+ .-...+|+++.||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~-~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILE-AGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHH-cCCCcCCEEEECCEEEE
Confidence 66775 999999988 557777888888877761 111222 23456999997776553
No 153
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.19 E-value=0.092 Score=34.85 Aligned_cols=32 Identities=22% Similarity=0.058 Sum_probs=29.1
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.|+-|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987654
No 154
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.02 E-value=0.1 Score=34.47 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=29.1
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
++||+.+.|+-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988653
No 155
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.51 Score=30.39 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred CCCceEEee-----cCCChhhHHHHHHHHHhC-CceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHH
Q 030074 19 SSSKLVLYS-----YWQSSCSWRVRFALKLKG-LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (183)
Q Consensus 19 ~~~~~~L~~-----~~~s~~~~~v~~~L~~~g-i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~ 92 (183)
...++.||- ++.|+|+.++-=+|..+| ++|..+.|--+ +.-...++.-+-=.++|-|-.+|+-+.+|.-|.+
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHhccHhhcCCCCCceeeECCEEeccHHHHHH
Confidence 345688884 568999999999999999 67766655321 1111222222333479999999999888876666
Q ss_pred HHH
Q 030074 93 YLE 95 (183)
Q Consensus 93 ~l~ 95 (183)
...
T Consensus 91 m~q 93 (105)
T COG0278 91 MYQ 93 (105)
T ss_pred HHH
Confidence 543
No 156
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.43 E-value=0.18 Score=33.07 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=44.7
Q ss_pred CChhhHHHHHHHHHh---CCceEEEEeeCCCCCCCChhhhh-hC-CCCccceEE-eCCe-------------eEEehHHH
Q 030074 30 QSSCSWRVRFALKLK---GLIYEYKAVDLSKGEQFSPEFEE-LN-PLHFVPVLV-DGDV-------------VVSDSYAI 90 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~---gi~~~~~~~~~~~~~~~~~~~~~-~~-p~g~~P~L~-~~g~-------------~l~es~aI 90 (183)
.||.|..+.=+|... .-..+.+.|++..+. .+..+ +. -...+|+|+ .+|. -|.+...|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR---~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPR---QAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCch---HHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 378888888777643 334666667765421 12222 11 145699999 5554 68999999
Q ss_pred HHHHHHhCC
Q 030074 91 LLYLEEKYP 99 (183)
Q Consensus 91 ~~~l~~~~~ 99 (183)
++||+++++
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999986
No 157
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=93.30 E-value=0.16 Score=35.43 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeecCcceec
Q 030074 150 WVQTHIEKGFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 150 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
..++.+...++.+-+.+.. +++|+.|+++|+|
T Consensus 79 D~r~~L~~a~~~w~~~~~~-~~~FlaGd~ptIA 110 (149)
T cd03197 79 DVREWLYDALNTWVAALGK-DRQFHGGSKPNLA 110 (149)
T ss_pred hHHHHHHHHHHHHHHHhcC-CCCccCCCCCCHH
Confidence 3456666666655555554 2789999999987
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.02 E-value=0.66 Score=29.25 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=37.5
Q ss_pred ceEEeecCCChhhHHHHHHHHHh-----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~ 85 (183)
.+++|..++|++|..+.-++... ++.+..+ +.. ..++......-..+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~v--d~~----~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMI--DGA----LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEE--EhH----hCHHHHHHcCCccCCEEEECCEEEE
Confidence 58889889999999988877654 3444444 432 2233333334456999997776544
No 159
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.36 E-value=0.49 Score=26.19 Aligned_cols=53 Identities=26% Similarity=0.160 Sum_probs=33.5
Q ss_pred eEEeecCCChhhHHHHHHHH-----HhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 23 LVLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
+.+|+...|+.|.+.+..+. ..++.+..+.++... . ........+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--A-LEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--H-HhhHHHhCCCccccEEE
Confidence 35677788999999999998 344555544433221 1 11112356778899988
No 160
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.19 E-value=0.78 Score=29.65 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=42.4
Q ss_pred ceEEeecCCCh------hhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhC---------CCCccceEEeCCeeEEe
Q 030074 22 KLVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN---------PLHFVPVLVDGDVVVSD 86 (183)
Q Consensus 22 ~~~L~~~~~s~------~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~---------p~g~~P~L~~~g~~l~e 86 (183)
.+++|....++ ..+++..+|.-++|+|+.+.+... +....++.+.. +..-.|.+..++..+.+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 47888766554 367999999999999998877652 23333444322 23345788888888777
Q ss_pred hHHHHHHH
Q 030074 87 SYAILLYL 94 (183)
Q Consensus 87 s~aI~~~l 94 (183)
--.+...-
T Consensus 80 ye~f~ea~ 87 (99)
T PF04908_consen 80 YEDFEEAN 87 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 161
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=85.53 E-value=1.2 Score=29.09 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=22.2
Q ss_pred eecCCChhhHHHHHHHHHhCCceEEEEee
Q 030074 26 YSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (183)
Q Consensus 26 ~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 54 (183)
|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987553
No 162
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=84.80 E-value=3.2 Score=26.45 Aligned_cols=56 Identities=11% Similarity=-0.080 Sum_probs=32.5
Q ss_pred ceEEeecCCChhhHHHHHHH--------HHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 22 KLVLYSYWQSSCSWRVRFAL--------KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L--------~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
.+..|+.++|+.|++..-.+ .+.+ .+....++....+....++........+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 45667778999999876433 2232 46666666543211234555444456799877
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=81.70 E-value=9.1 Score=23.03 Aligned_cols=57 Identities=19% Similarity=0.057 Sum_probs=34.3
Q ss_pred eEEeecCCChhhHHHHHHH----HHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEeh
Q 030074 23 LVLYSYWQSSCSWRVRFAL----KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS 87 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L----~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es 87 (183)
++++ .+.||+|.++.-++ ...|+.++.+.+ . ..++. .......+|+|+.||...+..
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~----~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI--E----DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T----THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c----CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 5674 46699999666644 455766655443 2 12233 334466799999888765544
No 164
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=79.87 E-value=15 Score=24.46 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=34.4
Q ss_pred eEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCC-CCCC----hhhhhhC----CCCccceEE--eCCeeE
Q 030074 23 LVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKG-EQFS----PEFEELN----PLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~-~~~~----~~~~~~~----p~g~~P~L~--~~g~~l 84 (183)
+..|+.++||+|++..=.|.. .++++-.+.++-... +... .++.... ....+|+++ .+|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 666788999999986666643 345555554442211 1111 1333222 234599988 667544
No 165
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.07 E-value=13 Score=24.33 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=38.3
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCC---ceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEEe
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSD 86 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~e 86 (183)
..+..|+.++|+.|+...-.+....- ......++.. ..++......-..+|+++ .+|..+..
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 34556667899999988777754221 1345556643 334445545566899888 67876653
No 166
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=79.03 E-value=6.7 Score=27.01 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=50.6
Q ss_pred cCCCCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhh-hC-C--CCccceEEeCCeeEEe---hHH
Q 030074 17 SSSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEE-LN-P--LHFVPVLVDGDVVVSD---SYA 89 (183)
Q Consensus 17 ~~~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~-~~-p--~g~~P~L~~~g~~l~e---s~a 89 (183)
-+...+++.|..+.|++|..--=.|+.+|+++..+..+.. ..+++ .+ | ....=+.+.+|..+-+ ..+
T Consensus 22 ~a~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~a 95 (149)
T COG3019 22 QAQATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEA 95 (149)
T ss_pred hcceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHH
Confidence 3445578999999999999888888888887777654422 12221 11 1 2334456777776643 478
Q ss_pred HHHHHHHhC
Q 030074 90 ILLYLEEKY 98 (183)
Q Consensus 90 I~~~l~~~~ 98 (183)
|.++|+++.
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 999988875
No 167
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.43 E-value=1.4 Score=37.04 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=47.4
Q ss_pred eCCeeEEehHHHHHHHHHhCC-CCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 030074 79 DGDVVVSDSYAILLYLEEKYP-QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEK 157 (183)
Q Consensus 79 ~~g~~l~es~aI~~~l~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+|..+.++..+..|..+... .+.||+. + .++.+|+.|+++.... .-..+..
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~-~-~d~~~vd~w~~~s~~~-------------------------~~~~~s~ 95 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGN-N-IDRSQVDHWVSFSSTF-------------------------SFDEISS 95 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCC-c-ccHHHHHHHHHHhhhc-------------------------chHHHHH
Confidence 445666666666777665443 2458887 6 8899999999987541 1122444
Q ss_pred HHHHHHHHHhccCCceeecCcceec
Q 030074 158 GFLALEKLLIDFAAKYATGEDVYMV 182 (183)
Q Consensus 158 ~l~~le~~L~~~~~~~l~G~~~T~a 182 (183)
.+..|+..|.- +.||+|.++|+|
T Consensus 96 ~~~~ld~~l~~--~t~lvg~sls~A 118 (712)
T KOG1147|consen 96 SLSELDKFLVL--RTFLVGNSLSIA 118 (712)
T ss_pred HHHHHHhhhhH--HHHhhccchhHH
Confidence 45556666665 667777666654
No 168
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=76.85 E-value=13 Score=24.30 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=32.2
Q ss_pred eEEe-ecCCChhhHHHHHHHHHhCCc---eEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 23 LVLY-SYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 23 ~~L~-~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
++++ +.++||.|+.++-++....-. ++...++.. ..+++........+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 4455 457999999887777644322 344445543 234555555567899888
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=74.71 E-value=18 Score=22.62 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=34.9
Q ss_pred ceEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+.+|+.++|+.|....-.+.. .+-.+....++.. ..+++....-...+|++. .+|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4556667899999988766644 2213555556643 233444333345799776 666654
No 170
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=71.84 E-value=2.4 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=13.3
Q ss_pred ccceEE--eCCeeEEehHHHHHHHHHhCC
Q 030074 73 FVPVLV--DGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 73 ~~P~L~--~~g~~l~es~aI~~~l~~~~~ 99 (183)
.-|-|. -+|..++|++||+||+..-+-
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 357774 568899999999999998763
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=71.44 E-value=5.7 Score=33.50 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=40.2
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSD 86 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~e 86 (183)
.+++|..+.||+|-.+.-+++..-+....+.....++ ...+++....-...+|.++.+|..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG-ALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc-hhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 4889999999999988777765544322222222222 234455544445689999977766655
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=69.03 E-value=7.8 Score=32.67 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=40.0
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCc---eEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSD 86 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~e 86 (183)
.+++|..+.||+|-.+.-+++..-+. ++...++- ...+++....-...+|.++.+|..+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~ 182 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEEFGQ 182 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcEEEe
Confidence 48899999999999877776554332 33333332 334555554455689999977766655
No 173
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=67.39 E-value=38 Score=23.31 Aligned_cols=79 Identities=13% Similarity=-0.104 Sum_probs=45.5
Q ss_pred CCCCceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCC---CC-ccceEEeCCeeEEehHHHHHH
Q 030074 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNP---LH-FVPVLVDGDVVVSDSYAILLY 93 (183)
Q Consensus 18 ~~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p---~g-~~P~L~~~g~~l~es~aI~~~ 93 (183)
|..+.+++++...|+.|-..--.|..+...=.....+.... ..-.++...+ -. ..=.++.+|..+.+|.|+++-
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 34455666667899998865555555555433443343221 1112222222 21 122334789999999999998
Q ss_pred HHHhC
Q 030074 94 LEEKY 98 (183)
Q Consensus 94 l~~~~ 98 (183)
+-...
T Consensus 83 ~~~L~ 87 (137)
T COG3011 83 LRLLP 87 (137)
T ss_pred HHHCC
Confidence 87765
No 174
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=66.67 E-value=7.7 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.7
Q ss_pred cceEE-eCCeeEEehHHHHHHHHHhCC
Q 030074 74 VPVLV-DGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 74 ~P~L~-~~g~~l~es~aI~~~l~~~~~ 99 (183)
+|.+. .+|.+++.|..|+++...++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46555 899999999999999988763
No 175
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=66.22 E-value=25 Score=20.82 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=33.8
Q ss_pred ceEEeecCCChhhHHHHHHHHH-----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~ 83 (183)
-+.+|+.++|+.|+...-.+.. .++.+- .++... ...+........+|+++ .+|..
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~~----~~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVDE----NPELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECCC----ChhHHHhcCcccccEEEEEECCEE
Confidence 4666677889999988877765 444443 344332 23444344455799877 55653
No 176
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=65.37 E-value=30 Score=21.34 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred ceEEeecCCChhhHHHHHHHHHh----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+..|+.++|+.|++..-.|... ...+....++.. ..+++....-...+|++. .+|..+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 45566678899999887766532 334555555532 233444333345699877 666644
No 177
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.89 E-value=15 Score=27.45 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=49.5
Q ss_pred CceEEee-----cCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHH
Q 030074 21 SKLVLYS-----YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (183)
Q Consensus 21 ~~~~L~~-----~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l 94 (183)
.++.||- .+.|+|++.+.-+|+..|++|+...+--+. .-..-.+..+--.+.|-|-.+|+-+.+..-|...+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De--elRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE--ELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH--HHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 4578884 467999999999999999998887664321 11222223343457899989998877766555543
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=61.79 E-value=35 Score=29.14 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=37.5
Q ss_pred ceEEeecCCChhhHHHHHHHH----Hh-CCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEE
Q 030074 22 KLVLYSYWQSSCSWRVRFALK----LK-GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~----~~-gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~ 85 (183)
.+++|..+.||+|-.+.-+++ +. +|..+.+.+.- .+++........+|.++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEEEE
Confidence 478888899999987655443 44 57666665542 234443334556999997776543
No 179
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.58 E-value=35 Score=22.07 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=39.8
Q ss_pred EeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCC-hhhhhh---CCCCccceEEeCCe-eEEehHHHHHHHHHh
Q 030074 25 LYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFS-PEFEEL---NPLHFVPVLVDGDV-VVSDSYAILLYLEEK 97 (183)
Q Consensus 25 L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~-~~~~~~---~p~g~~P~L~~~g~-~l~es~aI~~~l~~~ 97 (183)
|++...||+|.+..-.+...+..=....++....+... .....+ +....+-+ ..+|. ++.++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 35578899999887777766653333334432111110 011111 12233333 55665 999999999986654
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=59.63 E-value=62 Score=23.74 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=33.5
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCC---ceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
.+++|+.++||+|..+.-+++..-. ......++.. ..++......-..+|+++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEE
Confidence 4666888999999988877765422 2333345543 234444444455699998
No 181
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=59.38 E-value=45 Score=21.49 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=33.4
Q ss_pred CceEEeecCCChhhHHHHHHH-----HHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 21 SKLVLYSYWQSSCSWRVRFAL-----KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
+.+..|+.++|+.|+...-.+ .+.+..+....++... .+.......-..+|+++ .+|..+
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEEEEECCEEE
Confidence 345666778899887665443 2233334444555432 23444334456799887 666543
No 182
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=59.19 E-value=40 Score=20.77 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=44.2
Q ss_pred CCceEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEE------eh
Q 030074 20 SSKLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVS------DS 87 (183)
Q Consensus 20 ~~~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~------es 87 (183)
...+..|+.++|+.|+...=.+.. .+-.+....++.. ..+.+....-...+|++. .+|..+. ..
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 93 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNA 93 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSH
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCH
Confidence 345667777899999988755532 2225666666654 334555555567899887 6665442 33
Q ss_pred HHHHHHHH
Q 030074 88 YAILLYLE 95 (183)
Q Consensus 88 ~aI~~~l~ 95 (183)
..|..+|.
T Consensus 94 ~~l~~~i~ 101 (103)
T PF00085_consen 94 ESLIEFIE 101 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 183
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=58.26 E-value=41 Score=20.67 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=34.1
Q ss_pred ceEEeecCCChhhHHHHHHHHHh----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~ 83 (183)
.+..|+.++|+.|++..-.+... .-.+....++.. ..+.+........+|+++ .+|..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 34555567888898776665432 223445556553 234554444456799888 66654
No 184
>PHA03075 glutaredoxin-like protein; Provisional
Probab=56.83 E-value=27 Score=23.29 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=31.8
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLS 56 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~ 56 (183)
.+.|+|-+.|+-|+-+.-+|....-+|+..+++..
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 57899999999999999999999999999999864
No 185
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=56.49 E-value=54 Score=21.46 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=14.1
Q ss_pred CceEEeecCCChhhHHHHH
Q 030074 21 SKLVLYSYWQSSCSWRVRF 39 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~ 39 (183)
+.+..|+.++|++|++..-
T Consensus 16 ~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred cEEEEEeCCCCHHHHHHHH
Confidence 4566677789999998753
No 186
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=55.85 E-value=45 Score=20.37 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=32.0
Q ss_pred ceEEeecCCChhhHHHHHHHHHh----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~ 83 (183)
.+..|+.++|+.|+...-.+... +-.+....++.. ..+.+....-...+|+++ .+|..
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 45555567888888776555432 222555555543 233443333345799877 55543
No 187
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=54.51 E-value=41 Score=21.28 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=30.9
Q ss_pred ceEEeecCCChhhHHHHHHHHH----hC-CceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL----KG-LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~----~g-i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+..|+.++|+.|+...-.+.. .+ -......++.+ .++.....--..+|+++ .+|..+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 3555667789988876544432 22 12344444443 12333333345688776 666544
No 188
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=53.95 E-value=11 Score=25.58 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 030074 149 LWVQTHIEKGFLALEKLLID 168 (183)
Q Consensus 149 ~~~~~~~~~~l~~le~~L~~ 168 (183)
....++++..|..++..+..
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~ 78 (128)
T cd03199 59 PQYIAALNALLEELDPLILS 78 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 35667788888888888843
No 189
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=53.52 E-value=38 Score=21.02 Aligned_cols=60 Identities=13% Similarity=0.008 Sum_probs=31.2
Q ss_pred CceEEeecCCChhhHHHHHHH----HHhC--CceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 030074 21 SKLVLYSYWQSSCSWRVRFAL----KLKG--LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L----~~~g--i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~ 82 (183)
..+.+|+.++|+.|+...=.+ .... -.+....++... ...+.+.....-..+|+++ .+|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEEEEeCCC
Confidence 345666678899998774333 2221 223344444432 1234444333445699887 4454
No 190
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=49.73 E-value=41 Score=21.75 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=34.0
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCc---eEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEEeh
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSDS 87 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~es 87 (183)
.+..|+.++|+.|+...-.++...-. .....++... . .+....--..+|+++ .+|..+...
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 34556678899898776666432211 2334455432 1 333333345799887 677765443
No 191
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.61 E-value=27 Score=27.01 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCceEEeecCC------ChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhhh----CCCCccceEEeCCeeEEehHH
Q 030074 20 SSKLVLYSYWQ------SSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEEL----NPLHFVPVLVDGDVVVSDSYA 89 (183)
Q Consensus 20 ~~~~~L~~~~~------s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~----~p~g~~P~L~~~g~~l~es~a 89 (183)
..++.+|.... .--|..||.+|+-.+|-|+.+.|.++.. ..+++..+ .-.-.+|.+..+|.-|....-
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaee 207 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEE 207 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHH
Confidence 34688885442 2348899999999999999999988642 22233321 124569977799999888887
Q ss_pred HHHH
Q 030074 90 ILLY 93 (183)
Q Consensus 90 I~~~ 93 (183)
|.+.
T Consensus 208 V~~L 211 (281)
T KOG2824|consen 208 VVRL 211 (281)
T ss_pred hhhh
Confidence 7764
No 192
>PTZ00051 thioredoxin; Provisional
Probab=49.52 E-value=60 Score=19.95 Aligned_cols=59 Identities=15% Similarity=0.029 Sum_probs=33.3
Q ss_pred ceEEeecCCChhhHHHHHHHHHh---CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK---GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~---gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+..|+.++|+.|+...-.+... ...+....++.. ....+........+|+++ .+|..+
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 35566678899998776655442 112344445543 233444444456799877 556543
No 193
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=48.49 E-value=61 Score=22.87 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=26.6
Q ss_pred ceEEeec-CCChhhHHHH-------HHHHHhCCceEEEEeeCCCCCCCChhhhh
Q 030074 22 KLVLYSY-WQSSCSWRVR-------FALKLKGLIYEYKAVDLSKGEQFSPEFEE 67 (183)
Q Consensus 22 ~~~L~~~-~~s~~~~~v~-------~~L~~~gi~~~~~~~~~~~~~~~~~~~~~ 67 (183)
.+.||.. .+||-|+--- -.+...+-|++.+.|..+..+....+|..
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 3455532 3677676333 23344566899999998764444444444
No 194
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=46.34 E-value=34 Score=21.70 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=29.7
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCc---eEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGD 81 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g 81 (183)
.+..|+.++|+.|++..=.+....-. +....++-. ...+.+....--..+|++. ++|
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEEEEcCC
Confidence 35556678899998776555432211 222334322 1233443333345799877 445
No 195
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=46.20 E-value=86 Score=20.76 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=34.8
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCc----eEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~----~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+.-|+..||+.|+...=.+...--. .....++.+ ..+++....--..+|++. -+|..+
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 34446678999999776666433222 334455554 244555444455699887 667654
No 196
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=45.35 E-value=86 Score=20.55 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=30.8
Q ss_pred ceEEeecCCChhhHHHHHHHHH------hCCceEEEEeeCCCCCCCChhhhhhCCCC-ccceEE--e-CCeeEE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL------KGLIYEYKAVDLSKGEQFSPEFEELNPLH-FVPVLV--D-GDVVVS 85 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~------~gi~~~~~~~~~~~~~~~~~~~~~~~p~g-~~P~L~--~-~g~~l~ 85 (183)
.+..|+..+|+.|++..-.+.. ....|-. ++....... .-...+..| .+|+++ + +|..+.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~--v~vd~~~~~--~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVM--VNLEDDEEP--KDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEE--EEecCCCCc--hhhhcccCCCccceEEEECCCCCCch
Confidence 4555667899999977555543 2223444 443321111 111234443 499887 3 566543
No 197
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=45.17 E-value=92 Score=20.84 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=35.0
Q ss_pred eEEeecCCChhhHHHHH-HH------HHhCCceEEEEeeCCCCCCCChhhhh----hCCCCccceEE---eCCeeEEeh
Q 030074 23 LVLYSYWQSSCSWRVRF-AL------KLKGLIYEYKAVDLSKGEQFSPEFEE----LNPLHFVPVLV---DGDVVVSDS 87 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~-~L------~~~gi~~~~~~~~~~~~~~~~~~~~~----~~p~g~~P~L~---~~g~~l~es 87 (183)
+..++..+|++|++..- .+ ....-.|..+.++..........+.. .+-.+-+|+++ .+|..+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 33456678999997742 22 22334677777776432111111211 12244589777 557777665
No 198
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=44.61 E-value=1.2e+02 Score=22.14 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=33.5
Q ss_pred ceEEeec---CCChhhHHHHHHHHHhCCce---EEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 030074 22 KLVLYSY---WQSSCSWRVRFALKLKGLIY---EYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (183)
Q Consensus 22 ~~~L~~~---~~s~~~~~v~~~L~~~gi~~---~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~ 83 (183)
.+.+|+. ++||.|....=++....-.| +...++.+. ...++.....--..+|+++ .+|..
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~--~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT--PEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC--cccHHHHHHcCCCccCEEEEEeCCee
Confidence 4667766 78999997777665442222 222333321 1234444444456799887 45543
No 199
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.55 E-value=57 Score=22.99 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=24.5
Q ss_pred eEEeecCCChhhHHHHH----HHHHh-CCceEEEEeeCC
Q 030074 23 LVLYSYWQSSCSWRVRF----ALKLK-GLIYEYKAVDLS 56 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~----~L~~~-gi~~~~~~~~~~ 56 (183)
+++|+...||||....- ++... ++.++.+.+.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 68898899999985544 33445 788887777654
No 200
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=43.39 E-value=75 Score=22.65 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=33.5
Q ss_pred eEEeecCCChhhHHHHHHHHHhCC---ceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEEeh
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSDS 87 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~es 87 (183)
+..|+.++|+.|..+.-.|...-- .+..+.++... . ......+-..+|+|+ -+|..+..-
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 444556788888866544432211 24445555432 1 333444566899887 677766443
No 201
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.73 E-value=34 Score=20.94 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.9
Q ss_pred CChhhHHHHHHHHHhCCceEEEEeeC
Q 030074 30 QSSCSWRVRFALKLKGLIYEYKAVDL 55 (183)
Q Consensus 30 ~s~~~~~v~~~L~~~gi~~~~~~~~~ 55 (183)
.-+|++|+.-+|+..|++|+..+-..
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCCC
Confidence 45899999999999999999875443
No 202
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=74 Score=25.02 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=48.6
Q ss_pred CceEEeecCCChhhHHHHHHHH----HhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEEe------hH
Q 030074 21 SKLVLYSYWQSSCSWRVRFALK----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSD------SY 88 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~e------s~ 88 (183)
+.+.+|..++|+-|....=.|+ .++=.|....++.+. .+..-....-..+|+++ -+|+.+-+ -.
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~----~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPes 120 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA----EPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPES 120 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc----chhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHH
Confidence 4556666667777776555543 334458888888753 45555555667899877 67766633 24
Q ss_pred HHHHHHHHhCC
Q 030074 89 AILLYLEEKYP 99 (183)
Q Consensus 89 aI~~~l~~~~~ 99 (183)
.|-++|++..+
T Consensus 121 qlr~~ld~~~~ 131 (304)
T COG3118 121 QLRQFLDKVLP 131 (304)
T ss_pred HHHHHHHHhcC
Confidence 78888887765
No 203
>PHA02278 thioredoxin-like protein
Probab=42.01 E-value=93 Score=19.97 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=32.2
Q ss_pred eEEeecCCChhhHHHHHHHHHh----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 23 LVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
+.-|+.++|+.|+...=.+... ........++.+......+++....--..+|+++ .+|+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4445567888888666444332 2222344455432111123443333345699888 677655
No 204
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=40.49 E-value=90 Score=19.39 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=32.4
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCC----ceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGL----IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi----~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~ 82 (183)
-+..|+.++|+.|+...-.+....- .+....++... .+.+....--..+|++. .+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 4566677889998876655533221 24455566542 23443333456799886 5554
No 205
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=39.80 E-value=86 Score=18.95 Aligned_cols=53 Identities=32% Similarity=0.382 Sum_probs=33.9
Q ss_pred ceEEeecCCChhhHHHHHHH-----HHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 22 KLVLYSYWQSSCSWRVRFAL-----KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
.+.||....+|.+.+..--+ ++.+-+|+...+|..+ +++.....-.-..|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechhh
Confidence 46788877778777554333 3457789999999753 44444433344577766
No 206
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=39.63 E-value=83 Score=18.72 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.2
Q ss_pred ccceEEeCCeeEEehHHHHHHHHHhC
Q 030074 73 FVPVLVDGDVVVSDSYAILLYLEEKY 98 (183)
Q Consensus 73 ~~P~L~~~g~~l~es~aI~~~l~~~~ 98 (183)
+=||+..+| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 468888888 8899999999999843
No 207
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=39.49 E-value=1.2e+02 Score=20.60 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=31.6
Q ss_pred eEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--e-CCeeE
Q 030074 23 LVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--D-GDVVV 84 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~-~g~~l 84 (183)
+..|+..+|+.|+...=.+.. .+-.+..+.++.+.. ....+....-...+|+++ + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 444555688888876655532 222345555554421 222333333345699776 3 56655
No 208
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=39.23 E-value=94 Score=19.62 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=31.9
Q ss_pred ceEEeecCCChhhHHHHHHHHHhC---CceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKG---LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~g---i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+..|+.++|+.|+...=.+.... -.+....++.+.. ....++....--..+|+++ .+|..+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 344555678888886654443321 1234445554321 1112444433445699877 566654
No 209
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=38.12 E-value=75 Score=23.12 Aligned_cols=34 Identities=21% Similarity=0.021 Sum_probs=22.6
Q ss_pred CceEEeecCCChhhHHHH----HHHHHhCCceEEEEee
Q 030074 21 SKLVLYSYWQSSCSWRVR----FALKLKGLIYEYKAVD 54 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~----~~L~~~gi~~~~~~~~ 54 (183)
+++.+|+...||||.-.. -++...+++++.+.+.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 368899989999988543 3344556665555543
No 210
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.00 E-value=47 Score=19.19 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=19.6
Q ss_pred eEEeecCCChhhHHHHHHHHHhCCceEEEE
Q 030074 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKA 52 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~ 52 (183)
.+||......-+..++-+|+..||++..+.
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~ 30 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKN 30 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEEC
Confidence 367766666669999999999999988763
No 211
>PRK09266 hypothetical protein; Provisional
Probab=36.91 E-value=34 Score=26.06 Aligned_cols=60 Identities=25% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHhCC
Q 030074 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (183)
Q Consensus 40 ~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~~~ 99 (183)
.+...|++++...+.+.+-....+-|..-+..|-+||-..++..+.+...|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 345568998888877654223334455444568999999887777655677777776653
No 212
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=36.68 E-value=86 Score=20.67 Aligned_cols=62 Identities=11% Similarity=-0.033 Sum_probs=37.6
Q ss_pred CceEEeecCC--ChhhHHHHHHHHHhCCce----EEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEEe
Q 030074 21 SKLVLYSYWQ--SSCSWRVRFALKLKGLIY----EYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVSD 86 (183)
Q Consensus 21 ~~~~L~~~~~--s~~~~~v~~~L~~~gi~~----~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~e 86 (183)
..+.+|+..+ ||-|+.+.-+|...--.| ....++..+ .++.....--..+|+|+ .+|..+..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~----~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD----EQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC----CHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3455665554 999998887776544443 333455432 33544444455699988 67876644
No 213
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=35.79 E-value=1.1e+02 Score=19.03 Aligned_cols=54 Identities=11% Similarity=-0.079 Sum_probs=30.5
Q ss_pred CceEEeecCCChhhHHHHHHHHHh----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
..+..|+.++|+.|++..=.+... +-.+....++.. ..+++.....-..+|++.
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 345666778899998765444322 212444455543 234444434456799877
No 214
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=35.42 E-value=1.5e+02 Score=20.58 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=33.6
Q ss_pred eEEeecCCChhhHHHHHHHHHh-----CCceEEEEeeCCCCCCCChhhhhh-CC-----CCccceEE--eCCeeEE
Q 030074 23 LVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEEL-NP-----LHFVPVLV--DGDVVVS 85 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~~~-~p-----~g~~P~L~--~~g~~l~ 85 (183)
+..|+.++|+.|+...-.+... +-.+....++.+. .++.... +- .+.+|+++ .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 5666678899888776555322 2235555666543 2333322 21 13489887 7777654
No 215
>PRK10996 thioredoxin 2; Provisional
Probab=35.38 E-value=1.4e+02 Score=20.14 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=34.7
Q ss_pred ceEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
.+..|+.++|+.|+...-.+.. .+-.+....++.. ..+++....--..+|+++ .+|+.+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 3556667889998876544432 2333555556553 234555444456799887 667654
No 216
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=33.95 E-value=1e+02 Score=18.81 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=29.9
Q ss_pred CceEEeecCCChhhHHHHHHHHH-----hCC-ceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKL-----KGL-IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~-----~gi-~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
..+.+|+.++|+.|+...-.+.. .+- .+....++.. ..+.+........+|++.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEE
Confidence 34677778899999875444432 221 1334444432 234444333456799875
No 217
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=33.11 E-value=17 Score=24.84 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 030074 148 LLWVQTHIEKGFLALEKLLID 168 (183)
Q Consensus 148 ~~~~~~~~~~~l~~le~~L~~ 168 (183)
...+.++++..|..||..+..
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~ 77 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLAS 77 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC
T ss_pred CHHHHHHHHHHHHHHHHHhcc
Confidence 356677788888888888875
No 218
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=32.84 E-value=80 Score=22.71 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.1
Q ss_pred CCceEEeecCCChhhHHHHHHHHH
Q 030074 20 SSKLVLYSYWQSSCSWRVRFALKL 43 (183)
Q Consensus 20 ~~~~~L~~~~~s~~~~~v~~~L~~ 43 (183)
...+.+|..+.||+|++..-.+..
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 345677778899999999988874
No 219
>PRK09381 trxA thioredoxin; Provisional
Probab=32.32 E-value=1.3e+02 Score=18.89 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=33.1
Q ss_pred ceEEeecCCChhhHHHHHHHHH----hCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
-+..|+.++||.|+...-.++. .+-.+....++... .+.+........+|+++ .+|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 3455556789989877644432 22235555566543 22333333456799887 567654
No 220
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=32.12 E-value=66 Score=21.52 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=27.3
Q ss_pred CCChhhHHHHHHHH----HhCCceEEEEeeCCC-CCCCCh--hhhhhCC---CCccceEE--eCCeeEEehHH
Q 030074 29 WQSSCSWRVRFALK----LKGLIYEYKAVDLSK-GEQFSP--EFEELNP---LHFVPVLV--DGDVVVSDSYA 89 (183)
Q Consensus 29 ~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~-~~~~~~--~~~~~~p---~g~~P~L~--~~g~~l~es~a 89 (183)
.|||-|.++.-++. .+.-....+.+.-.+ .+.+.+ .|. .+| ...||+|+ .++..|.|...
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR-~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFR-TDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHH-H--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCce-EcceeeeeecceEEEECCCCccchhhh
Confidence 48999998775553 332234544443221 111111 222 122 34599998 45666666543
No 221
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.84 E-value=1.9e+02 Score=21.69 Aligned_cols=71 Identities=21% Similarity=0.176 Sum_probs=47.0
Q ss_pred CceEEeecCCChhhHHHHHHHHHhCCceEEEEeeCCCCCCCChhhhh-hCCCCccceEEeCCeeE----EehHHHHHHHH
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEE-LNPLHFVPVLVDGDVVV----SDSYAILLYLE 95 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~-~~p~g~~P~L~~~g~~l----~es~aI~~~l~ 95 (183)
-++++|.+..|-.|....=.|+.+|+-=..+.++- ..+-|.. .+-.-.+|.+..||+.+ .|-..|-+-+.
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a-----~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDA-----ELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEc-----CCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 35889999999889988889999998666666653 2333332 23345699888666654 34455555554
Q ss_pred H
Q 030074 96 E 96 (183)
Q Consensus 96 ~ 96 (183)
-
T Consensus 86 G 86 (265)
T COG5494 86 G 86 (265)
T ss_pred C
Confidence 4
No 222
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=31.65 E-value=82 Score=16.28 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=19.9
Q ss_pred CCccceEEeCCeeEEehHHHHHHHH
Q 030074 71 LHFVPVLVDGDVVVSDSYAILLYLE 95 (183)
Q Consensus 71 ~g~~P~L~~~g~~l~es~aI~~~l~ 95 (183)
.|.+|....++..++....|.+|++
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4578877677888899999988875
No 223
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.59 E-value=1.1e+02 Score=18.81 Aligned_cols=55 Identities=11% Similarity=-0.053 Sum_probs=30.7
Q ss_pred CceEEeecCCChhhHHHHHHHHH----hC--CceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKL----KG--LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~----~g--i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
..+..|+.++|+.|+...-.+.. .. -.+....++.... .+.+.....-..+|+++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---chhhHHhCCCCCcCEEE
Confidence 35667777889988855444422 22 2355555554321 33444433456799876
No 224
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=30.51 E-value=1.3e+02 Score=18.37 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=30.8
Q ss_pred ceEEeecCCChhhHHHHHHH-----HHhC--CceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 030074 22 KLVLYSYWQSSCSWRVRFAL-----KLKG--LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L-----~~~g--i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~ 82 (183)
.+..|+.++|+.|+...=.+ ...+ ..+....++... .+...+...-..+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHhhcCCCcCCEEEEEeCCC
Confidence 45566677898888654333 2333 235555566432 22333333345699876 4554
No 225
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=30.36 E-value=1.7e+02 Score=19.48 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=28.9
Q ss_pred CCChhhHHHHHHHH----HhCCceEEEEeeCCCCC---CCChhhhhhCCCC-ccceEE--eCCeeEEe
Q 030074 29 WQSSCSWRVRFALK----LKGLIYEYKAVDLSKGE---QFSPEFEELNPLH-FVPVLV--DGDVVVSD 86 (183)
Q Consensus 29 ~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~~~---~~~~~~~~~~p~g-~~P~L~--~~g~~l~e 86 (183)
.|||.|++..=+++ ...-.+....++..+.. ....++....-.. .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 68999997655443 33323455556643211 1122333211122 699988 44554444
No 226
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=30.29 E-value=1.1e+02 Score=22.88 Aligned_cols=24 Identities=4% Similarity=0.070 Sum_probs=18.7
Q ss_pred CceEEeecCCChhhHHHHHHHHHh
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLK 44 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~ 44 (183)
..+.+|..+.||||++..--+...
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHH
Confidence 347778888999999998777543
No 227
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=29.17 E-value=1.3e+02 Score=22.81 Aligned_cols=21 Identities=0% Similarity=-0.080 Sum_probs=16.8
Q ss_pred ceEEeecCCChhhHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALK 42 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~ 42 (183)
.+.+|..+.||||++.+-.+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 466777789999999987664
No 228
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=28.97 E-value=52 Score=19.18 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=16.0
Q ss_pred ceEEeec----CCChhhHHHHHHHHH
Q 030074 22 KLVLYSY----WQSSCSWRVRFALKL 43 (183)
Q Consensus 22 ~~~L~~~----~~s~~~~~v~~~L~~ 43 (183)
+++||-+ .-+.||+|+..+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 3567654 357899999988864
No 229
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=28.83 E-value=3.9e+02 Score=23.17 Aligned_cols=60 Identities=5% Similarity=-0.109 Sum_probs=33.0
Q ss_pred eEEeecCCChhhHHHHHH-H------HHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--e-CCee
Q 030074 23 LVLYSYWQSSCSWRVRFA-L------KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--D-GDVV 83 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~-L------~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~-~g~~ 83 (183)
+.-|+.++|+.|+...-. + +..+ .+....+|..+.+....++.+......+|+++ + +|+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 444667789999875432 1 1122 36666677654333334554444445599887 3 4544
No 230
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=28.55 E-value=66 Score=20.35 Aligned_cols=35 Identities=9% Similarity=-0.024 Sum_probs=20.2
Q ss_pred ceEEeecCCChhhHHHHHHHHH---h----CCceEEEEeeCC
Q 030074 22 KLVLYSYWQSSCSWRVRFALKL---K----GLIYEYKAVDLS 56 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~---~----gi~~~~~~~~~~ 56 (183)
.+.+|+.++||+|++..-.+.. . .-.+..+.++..
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 4566677899999988655542 1 113556666654
No 231
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=28.46 E-value=1.5e+02 Score=18.78 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=31.1
Q ss_pred CceEEeecCCChhhHHHHHHHHH-----hCCceEEEEeeCCCCCCCChhhh-hhCCCCccceEE
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFE-ELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~-~~~p~g~~P~L~ 78 (183)
+.+..|+.++|+.|+...-.+.. .+..+....++.+. ....+. .......+|++.
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~---~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG---EQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc---cchhhHHhhcCCCcCCEEE
Confidence 45677778899999977654433 33335555555442 112222 223456799876
No 232
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=26.63 E-value=86 Score=20.85 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=20.8
Q ss_pred CCCccceEE-eCCeeEEehHHHHHHHHH
Q 030074 70 PLHFVPVLV-DGDVVVSDSYAILLYLEE 96 (183)
Q Consensus 70 p~g~~P~L~-~~g~~l~es~aI~~~l~~ 96 (183)
...++|.++ |+..++++...|.+-+.+
T Consensus 80 gi~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 80 GITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred CccccCEEEEcCCeEEecccHHHHHHHH
Confidence 355899888 767788998888776654
No 233
>PRK09301 circadian clock protein KaiB; Provisional
Probab=26.51 E-value=1.9e+02 Score=18.86 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCceEEeecCCChhhHHHHHHHH-----HhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 20 SSKLVLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 20 ~~~~~L~~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
.-.++||....+|.+++..--++ +.+-.|+...+|.. ++|+.....-.-..|+|+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~----~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVL----KNPQLAEEDKILATPTLA 65 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcc----cCHhHHhHCCeEEecHHh
Confidence 34578888888888876544332 33445999999975 345555444445577776
No 234
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=2.2e+02 Score=19.29 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=37.9
Q ss_pred CCChhhHHHHH----HHHHhCCceEEEEeeCCCCCCCChhhh-hhCCCC-------ccceEE--e-CCeeEEehHHHHHH
Q 030074 29 WQSSCSWRVRF----ALKLKGLIYEYKAVDLSKGEQFSPEFE-ELNPLH-------FVPVLV--D-GDVVVSDSYAILLY 93 (183)
Q Consensus 29 ~~s~~~~~v~~----~L~~~gi~~~~~~~~~~~~~~~~~~~~-~~~p~g-------~~P~L~--~-~g~~l~es~aI~~~ 93 (183)
+|||.|.++.= +|.++.-....+.+.-.+ + +.++ ..||++ -+|+|. . .++.+.+...-..+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~---r-p~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~ 118 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN---R-PYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDH 118 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecC---C-CcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHH
Confidence 48898886554 455566666666655332 1 1222 234433 478887 3 35677777777777
Q ss_pred HHHh
Q 030074 94 LEEK 97 (183)
Q Consensus 94 l~~~ 97 (183)
|.+.
T Consensus 119 Lve~ 122 (128)
T KOG3425|consen 119 LVEM 122 (128)
T ss_pred HHHH
Confidence 7654
No 235
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.08 E-value=2.2e+02 Score=20.01 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=36.6
Q ss_pred CCCCceEEeecCCChhhHHHHHHHHHhCCc----eEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeE
Q 030074 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (183)
Q Consensus 18 ~~~~~~~L~~~~~s~~~~~v~~~L~~~gi~----~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l 84 (183)
+..+.+.=|+..||+-|+.+.=.|++.--+ +....++.+.......+| --..+|+++ .||+..
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y----~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDY----EISAVPTVLVFKNGEKV 128 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhc----ceeeeeEEEEEECCEEe
Confidence 334566677778888888666666544332 444456654322222233 345699877 788765
No 236
>PF12728 HTH_17: Helix-turn-helix domain
Probab=24.93 E-value=1.2e+02 Score=16.17 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=22.2
Q ss_pred CCccceEEeCCeeEEehHHHHHHHHHh
Q 030074 71 LHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 71 ~g~~P~L~~~g~~l~es~aI~~~l~~~ 97 (183)
.|.+|....++...+.-..|.+|+.+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 24 QGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred cCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 457888888888999999999998764
No 237
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=24.81 E-value=1.8e+02 Score=18.07 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=32.3
Q ss_pred ceEEeecCCChhhHHHHHHHHHh----CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~ 82 (183)
.+..|+.++|+.|+...-.+... .-.+....++... ...+.+........+|++. .+|.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--DKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--cccHHHHHHcCCCcCCEEEEEeCCC
Confidence 46667778899998765444322 2223444455442 1233444444456799887 4443
No 238
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.93 E-value=1.9e+02 Score=18.78 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=32.0
Q ss_pred EEeecCCChhhHHHHHHHHHhCCceEE---EEeeCCCCCCCChhhhhhCCCCccceEE--eCCeeEE
Q 030074 24 VLYSYWQSSCSWRVRFALKLKGLIYEY---KAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVS 85 (183)
Q Consensus 24 ~L~~~~~s~~~~~v~~~L~~~gi~~~~---~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~~l~ 85 (183)
.-|+..||+-|..+.=.++..-..|.. ..++-+. ..++....--..+|+++ -+|+.+.
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCEEEE
Confidence 335567888888766555554444332 2344332 44444333355799988 5665543
No 239
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.71 E-value=69 Score=24.06 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=14.9
Q ss_pred ceEEeecCCChhhHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALK 42 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~ 42 (183)
.+.+|.-..||||...+--|+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ 27 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLE 27 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHH
Confidence 477777789999985544443
No 240
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=22.84 E-value=52 Score=25.30 Aligned_cols=57 Identities=11% Similarity=-0.063 Sum_probs=36.2
Q ss_pred HHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeE----EehHHHHHHHHH
Q 030074 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV----SDSYAILLYLEE 96 (183)
Q Consensus 40 ~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l----~es~aI~~~l~~ 96 (183)
+++..|++++...+.+.+-....+-|+.-+..+-+||-..++..+ .....|.+.|.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~ 271 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYD 271 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHH
Confidence 456779999998887654333444555555678899988776654 333455555544
No 241
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.74 E-value=1.6e+02 Score=20.71 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=20.1
Q ss_pred eEEeecCCChhhHHHHHHHH----HhCCceEEEEe
Q 030074 23 LVLYSYWQSSCSWRVRFALK----LKGLIYEYKAV 53 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L~----~~gi~~~~~~~ 53 (183)
+++|....||||....-.|+ ..+++++.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46788889999986544443 44665555544
No 242
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.63 E-value=2.8e+02 Score=23.16 Aligned_cols=37 Identities=8% Similarity=-0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhcc
Q 030074 88 YAILLYLEEKYPQRALLPAADPQQRALNLQAASIISSS 125 (183)
Q Consensus 88 ~aI~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~ 125 (183)
..++++|+++++-+.+... .+..-...+.|+..+...
T Consensus 246 ~~~a~~Lee~~GiP~~~~~-~p~G~~~t~~~l~~l~~~ 282 (455)
T PRK14476 246 RKAAEALEARTGVPYLVFP-SLTGLEAVDRFIATLAQI 282 (455)
T ss_pred HHHHHHHHHHhCCCeEecC-CCcChHHHHHHHHHHHHH
Confidence 4789999999975444322 233344555555555443
No 243
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=22.52 E-value=68 Score=19.90 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=31.3
Q ss_pred EEeecCCChhhHHHHHHHH-----HhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 24 VLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 24 ~L~~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
.||....++.++++.-.++ +.+-+|+...+|... .|+.....-.-..|+|+
T Consensus 1 rLyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 1 RLYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLE----QPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTT----SHSHHTTTEEECHHHHH
T ss_pred CeEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEccc----CHhHHhHCCeeecceEe
Confidence 3677667777777666554 467799999999753 34433222222356554
No 244
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=22.01 E-value=2e+02 Score=18.56 Aligned_cols=22 Identities=14% Similarity=-0.102 Sum_probs=14.3
Q ss_pred CceEEeecCCChhhHHHHHHHH
Q 030074 21 SKLVLYSYWQSSCSWRVRFALK 42 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~ 42 (183)
..+..|+.++|+.|+...-.+.
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~ 42 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWK 42 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHH
Confidence 3456666788888886555443
No 245
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=22.00 E-value=6.1e+02 Score=23.10 Aligned_cols=88 Identities=14% Similarity=-0.033 Sum_probs=54.0
Q ss_pred EeCCeeEEehHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 030074 78 VDGDVVVSDSYAILLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEK 157 (183)
Q Consensus 78 ~~~g~~l~es~aI~~~l~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
+.+..-+++..+|..||.+... |.|.---.+..+++.+++-..-.+...+.....+.......+++-.+.+.+.+..
T Consensus 270 ~fn~~d~~Gpk~islFl~kls~---l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~ 346 (1128)
T COG5098 270 SFNLPDLSGPKDISLFLNKLSE---LSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND 346 (1128)
T ss_pred eeecccccChHHHHHHHHHHhh---cCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH
Confidence 3455667888999999998854 7776223334444544443333333333333333333333455667888888888
Q ss_pred HHHHHHHHHhc
Q 030074 158 GFLALEKLLID 168 (183)
Q Consensus 158 ~l~~le~~L~~ 168 (183)
..+.++.+|..
T Consensus 347 Lv~ll~ERl~D 357 (1128)
T COG5098 347 LVGLLVERLSD 357 (1128)
T ss_pred HHHHHHHHhhc
Confidence 88888888876
No 246
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=21.92 E-value=97 Score=20.88 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=26.2
Q ss_pred ceEEeecCCChhhHHHHHHH----HHh-CCceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 22 KLVLYSYWQSSCSWRVRFAL----KLK-GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L----~~~-gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
.+.++.-.|||-|.+.-=++ +.. +++++....+ ......+.|+. +-...+|+++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd--~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD--ENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH--HHHHHTTTTTT--SS--SSEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec--CChhHHHHHHh-CCCeecCEEE
Confidence 46666778999988544333 344 5555554332 11122345555 6677899998
No 247
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=21.89 E-value=1.2e+02 Score=20.23 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=17.2
Q ss_pred CCCceEEeecCCChhhHHHHHHHH
Q 030074 19 SSSKLVLYSYWQSSCSWRVRFALK 42 (183)
Q Consensus 19 ~~~~~~L~~~~~s~~~~~v~~~L~ 42 (183)
+...++.|..+.||+|++..-.+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~ 28 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELE 28 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHH
Confidence 334577777889999998765544
No 248
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=21.71 E-value=2.2e+02 Score=17.86 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=32.1
Q ss_pred ceEEeecCCChhhHHHHHHHHHhC------C----ceEEEEeeCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKG------L----IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~g------i----~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~--~~g~ 82 (183)
.+..|+.++|+.|+...-.+...- . .+....++.+ ..+++....--..+|++. .+|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD----KESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC----CCHHHHHhCCCCcCCEEEEEeCCc
Confidence 355666789999997766554221 1 1333445543 234444444456799887 5554
No 249
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=21.71 E-value=3.7e+02 Score=20.53 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=25.5
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 030074 142 FGPDERLLWVQTHIEKGFLALEKLLIDFAAK 172 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 172 (183)
..++........++.+.+..+|..+..+|+.
T Consensus 201 iDpE~ALr~a~~KF~~Rf~~~E~~~~~~g~~ 231 (248)
T TIGR00444 201 TDAEIALQKANEKFERRFREVERIVAARGLE 231 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3566778889999999999999999886554
No 250
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=21.35 E-value=1.2e+02 Score=22.94 Aligned_cols=57 Identities=21% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeEEehHHHHHHHHHh
Q 030074 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (183)
Q Consensus 40 ~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l~es~aI~~~l~~~ 97 (183)
.++..|++++...+.+.+-....+-|..-+..|-+||...|+..+. ...+.+.|.+.
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~ 264 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPL 264 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHH
Confidence 3456799999998876543333445554456788999997776653 34566655443
No 251
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=21.24 E-value=91 Score=23.33 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=36.3
Q ss_pred HHHHhCCceEEEEeeCCCCCCCChhhhhhCCCCccceEEeCCeeE--EehHHHHHHHHH
Q 030074 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV--SDSYAILLYLEE 96 (183)
Q Consensus 40 ~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~~~g~~l--~es~aI~~~l~~ 96 (183)
.++..|++++...+.+.+-....+-|..-+..|-+|+-..++..+ .....|.+.|-+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 456679999988877654323344555445678899988777665 334566665543
No 252
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.97 E-value=1.6e+02 Score=20.97 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=13.9
Q ss_pred eEEeecCCChhhHHHHHHH
Q 030074 23 LVLYSYWQSSCSWRVRFAL 41 (183)
Q Consensus 23 ~~L~~~~~s~~~~~v~~~L 41 (183)
+++|+...||||....--|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 4678888999999555444
No 253
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=20.50 E-value=1e+02 Score=18.92 Aligned_cols=53 Identities=11% Similarity=-0.040 Sum_probs=29.2
Q ss_pred CceEEeecCCChhhHHHHHHHHHh-----C-CceEEEEeeCCCCCCCChhhhhhCCCCccceEE
Q 030074 21 SKLVLYSYWQSSCSWRVRFALKLK-----G-LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (183)
Q Consensus 21 ~~~~L~~~~~s~~~~~v~~~L~~~-----g-i~~~~~~~~~~~~~~~~~~~~~~~p~g~~P~L~ 78 (183)
..+.+|+.++|+.|+...-.+... + ..+....++.... +-....+ ...+|++.
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~-~~~~Pt~~ 78 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFV-VDGFPTIL 78 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhcc-CCCCCEEE
Confidence 356677778999999766555432 2 2344455554321 1111222 25799877
No 254
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.45 E-value=2.6e+02 Score=19.62 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=20.7
Q ss_pred ceEEeecCCChhhHHHHHHH----HHh--CCceEEEEee
Q 030074 22 KLVLYSYWQSSCSWRVRFAL----KLK--GLIYEYKAVD 54 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L----~~~--gi~~~~~~~~ 54 (183)
++.+|..+.||||....-.| +.. +++++.....
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~ 40 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGG 40 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecc
Confidence 36788889999998554443 343 5555554433
No 255
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=20.45 E-value=2.6e+02 Score=18.23 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=31.9
Q ss_pred ceEEeecCCChhhHHHHHHHHHhCCc----eEEEEeeCCCCCCCChhhh-hhCCCCccceEE--eCCe
Q 030074 22 KLVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFE-ELNPLHFVPVLV--DGDV 82 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~~~gi~----~~~~~~~~~~~~~~~~~~~-~~~p~g~~P~L~--~~g~ 82 (183)
.+..|+.+||+.|+...-.+....-. .....++.+. ..... ...--..+|+|. .+|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~----~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW----PQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC----ChHHHHHhcCCcccCEEEEEECCc
Confidence 45667788999999887766654322 3334555432 22332 122234689887 4443
No 256
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=20.00 E-value=98 Score=19.00 Aligned_cols=21 Identities=14% Similarity=-0.165 Sum_probs=13.1
Q ss_pred ceEEeecCCChhhHHHHHHHH
Q 030074 22 KLVLYSYWQSSCSWRVRFALK 42 (183)
Q Consensus 22 ~~~L~~~~~s~~~~~v~~~L~ 42 (183)
.+..|+..+|+.|.+..-.+.
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~ 42 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELE 42 (116)
T ss_pred EEEEeecccChhHHHHhHHHH
Confidence 345555668888886554443
Done!