BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030075
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 40 IPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVE--ILKK 97
+P +PFL VL+V+D G +++ DI NI++L + + + +A ++ I+ +
Sbjct: 30 VPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYR---ANQTVHAETLQELIIAE 86
Query: 98 EASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGW 157
+ +G A + A LWL R+ F+ + L+RL + +EQ V E+YN L+P H
Sbjct: 87 NSPDGLA------TVALLWLKRAFQFIASFLRRLVV-TDKSLEQCVTEAYNCTLRPCHSA 139
Query: 158 ISSAAF 163
+ F
Sbjct: 140 VIQKVF 145
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 76
Query: 98 EASEGNAR-KKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E A K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFK 164
ALK +HGWI F+
Sbjct: 135 ALKKYHGWIVQKIFQ 149
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 16 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 75
Query: 98 EASEGNAR-KKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E A K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 76 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 133
Query: 150 ALKPWHGWISSAAFK 164
ALK +HGWI F+
Sbjct: 134 ALKKYHGWIVQKIFQ 148
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 27 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 86
Query: 98 EASEGNAR-KKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E A K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 87 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 144
Query: 150 ALKPWHGWISSAAFK 164
ALK +HGWI F+
Sbjct: 145 ALKKYHGWIVQKIFQ 159
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 98 EASEGNAR-KKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E A K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFK 164
ALK +HGWI F+
Sbjct: 135 ALKKYHGWIVQKIFQ 149
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ I NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 98 EASEGNAR-KKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E A K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFK 164
ALK +HGWI F+
Sbjct: 135 ALKKYHGWIVQKIFQ 149
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ I NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 98 EASEGNAR-KKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E A K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFK 164
ALK +HGWI F+
Sbjct: 135 ALKKYHGWIVQKIFQ 149
>pdb|3AY5|A Chain A, Crystal Structure Of Hhm (Human Homologue Of Murine
Maternal Id-Like Molecule)
Length = 360
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 111 SKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSA 161
+ A L LT+++DF+ KD ++MEQAVEES P+ G ++
Sbjct: 171 AAALLMLTKNVDFV--------KDAHEEMEQAVEES-----DPYSGLLNDT 208
>pdb|1GMG|A Chain A, Alanine 31 Proline Mutant Of Rop Protein, Monoclinic Form
pdb|1GMG|B Chain B, Alanine 31 Proline Mutant Of Rop Protein, Monoclinic Form
pdb|1B6Q|A Chain A, Alanine 31 Proline Mutant Of Rop Protein
Length = 63
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 72 QNIQRLEKFCELDPSKYANVVEILKKEASE 101
Q + LEK ELDP + A++ E L A E
Sbjct: 18 QTLTLLEKLNELDPDEQADICESLHDHADE 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,107,757
Number of Sequences: 62578
Number of extensions: 137859
Number of successful extensions: 442
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 12
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)