Query 030075
Match_columns 183
No_of_seqs 113 out of 405
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08718 GLTP: Glycolipid tran 100.0 3.5E-50 7.5E-55 317.6 11.4 141 38-178 1-143 (149)
2 KOG3221 Glycolipid transfer pr 100.0 7.4E-44 1.6E-48 289.3 11.9 145 33-178 11-155 (199)
3 KOG4189 Uncharacterized conser 100.0 1.5E-42 3.2E-47 281.4 15.9 161 8-179 7-170 (209)
4 KOG2875 8-oxoguanine DNA glyco 54.6 21 0.00046 31.6 4.4 67 60-136 119-200 (323)
5 PF09409 PUB: PUB domain; Int 49.4 15 0.00033 25.8 2.3 55 117-172 6-63 (87)
6 PF08657 DASH_Spc34: DASH comp 46.1 37 0.00081 29.3 4.6 50 37-95 154-203 (259)
7 cd07604 BAR_ASAPs The Bin/Amph 45.2 83 0.0018 26.3 6.4 85 11-100 39-132 (215)
8 PF13496 DUF4120: Domain of un 44.5 7 0.00015 28.5 -0.1 13 147-159 81-93 (95)
9 cd07669 BAR_SNX33 The Bin/Amph 44.5 51 0.0011 27.7 5.0 63 8-79 47-110 (207)
10 cd07668 BAR_SNX9 The Bin/Amphi 42.5 56 0.0012 27.5 4.9 63 8-79 47-110 (210)
11 TIGR01280 xseB exodeoxyribonuc 41.7 82 0.0018 21.5 4.9 44 14-64 3-46 (67)
12 PRK14063 exodeoxyribonuclease 39.2 78 0.0017 22.2 4.6 44 13-63 6-49 (76)
13 cd07603 BAR_ACAPs The Bin/Amph 38.6 69 0.0015 26.4 4.9 71 12-90 40-119 (200)
14 cd07670 BAR_SNX18 The Bin/Amph 38.0 76 0.0016 26.7 5.0 63 8-79 47-110 (207)
15 cd07639 BAR_ACAP1 The Bin/Amph 37.7 81 0.0018 26.2 5.2 52 38-90 59-119 (200)
16 cd07626 BAR_SNX9_like The Bin/ 35.0 2.2E+02 0.0047 23.6 7.3 47 8-63 39-85 (199)
17 cd07627 BAR_Vps5p The Bin/Amph 34.9 1.6E+02 0.0034 24.2 6.5 72 3-82 33-108 (216)
18 PF09373 PMBR: Pseudomurein-bi 34.1 64 0.0014 18.8 3.0 26 37-62 2-27 (33)
19 cd07640 BAR_ASAP3 The Bin/Amph 31.1 3.3E+02 0.0071 23.0 8.2 70 14-90 42-122 (213)
20 cd07606 BAR_SFC_plant The Bin/ 30.3 1.8E+02 0.004 24.0 6.2 48 41-89 64-120 (202)
21 cd07624 BAR_SNX7_30 The Bin/Am 30.2 1.9E+02 0.0041 23.5 6.2 70 3-82 43-116 (200)
22 PRK14068 exodeoxyribonuclease 27.8 1.7E+02 0.0038 20.5 4.8 42 13-61 7-48 (76)
23 PF03172 Sp100: Sp100 domain; 27.6 1.2E+02 0.0026 22.8 4.1 41 11-58 14-58 (103)
24 PRK00977 exodeoxyribonuclease 27.4 1.8E+02 0.004 20.5 4.9 54 13-77 11-64 (80)
25 PF02609 Exonuc_VII_S: Exonucl 27.2 1.3E+02 0.0028 19.2 3.8 38 15-59 2-39 (53)
26 COG0598 CorA Mg2+ and Co2+ tra 26.6 4.3E+02 0.0093 23.0 10.7 75 47-135 136-210 (322)
27 cd07637 BAR_ACAP3 The Bin/Amph 26.2 2.5E+02 0.0055 23.1 6.3 49 42-91 63-120 (200)
28 PF13959 DUF4217: Domain of un 26.0 43 0.00094 22.5 1.4 40 125-165 3-43 (65)
29 PF07149 Pes-10: Pes-10; Inte 25.6 5.3E+02 0.011 23.7 11.0 127 44-181 203-342 (370)
30 PF09454 Vps23_core: Vps23 cor 25.1 1.5E+02 0.0033 20.1 4.0 32 13-54 23-54 (65)
31 PRK14066 exodeoxyribonuclease 24.2 2.3E+02 0.005 19.8 4.9 41 13-60 5-45 (75)
32 cd07666 BAR_SNX7 The Bin/Amphi 23.0 3.1E+02 0.0067 23.4 6.4 48 7-63 108-155 (243)
33 PF07787 DUF1625: Protein of u 22.5 1.3E+02 0.0028 25.2 4.0 33 89-130 166-198 (248)
34 PF08314 Sec39: Secretory path 21.9 1.9E+02 0.004 28.2 5.4 61 41-102 515-579 (715)
35 PF04424 DUF544: Protein of un 21.8 27 0.00058 26.5 -0.3 11 151-161 87-97 (121)
36 smart00101 14_3_3 14-3-3 homol 21.3 4.9E+02 0.011 22.2 7.3 106 42-153 89-204 (244)
No 1
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=3.5e-50 Score=317.56 Aligned_cols=141 Identities=35% Similarity=0.703 Sum_probs=131.3
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhHHHHHHHh-hhCccchhhHHHHHHHHHHcCCCCCCCchhhHHHH
Q 030075 38 IHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFC-ELDPSKYANVVEILKKEASEGNARKKTSCSKAFLW 116 (183)
Q Consensus 38 ~~I~~~~fl~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL~~~~-~~~~~~~~TL~~mv~~E~~~g~~~k~~S~tr~LLw 116 (183)
++|++++||+||++|++|||.||++|+||++||.+||++|++++ +.+|.+|.||++||++|+++|++++++||+++|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 46899999999999999999999999999999999999999999 78999999999999999999998888899999999
Q ss_pred HHhHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhhccccchhHHHHHHHhcccCCCcchhhh
Q 030075 117 LTRSLDFMVALLQRLAKDPGQK-MEQAVEESYNIALKPWHGWISSAAFKVMIPPYPISSIYQI 178 (183)
Q Consensus 117 L~RaL~Fi~~fl~~l~~~~~~~-l~~~a~~AY~~tL~~yH~w~vR~~~~~A~~~~P~R~~F~~ 178 (183)
|||||+|++.||+++.++++++ ++++|++||++||+|||||+||++|++||+++|+|++|+.
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~ 143 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLK 143 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999987665 9999999999999999999999999999999999999975
No 2
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-44 Score=289.33 Aligned_cols=145 Identities=34% Similarity=0.572 Sum_probs=140.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhHHHHHHHhhhCccchhhHHHHHHHHHHcCCCCCCCchhh
Q 030075 33 LDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSK 112 (183)
Q Consensus 33 ~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~k~~S~tr 112 (183)
+..++++|+|.+||+||.+|++|+|+||.+|+||++||+|||++++++|.+++.++.+|+.+|+.|++....+ ++|||+
T Consensus 11 ~l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~ 89 (199)
T KOG3221|consen 11 PLPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATL 89 (199)
T ss_pred CCCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999998877 899999
Q ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhccccchhHHHHHHHhcccCCCcchhhh
Q 030075 113 AFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVMIPPYPISSIYQI 178 (183)
Q Consensus 113 ~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~tL~~yH~w~vR~~~~~A~~~~P~R~~F~~ 178 (183)
+||||+|||+|+..||++|.++.++++..++.+||+.||+|||||++|++|++|++++|+|++|+.
T Consensus 90 aLLWLkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~ 155 (199)
T KOG3221|consen 90 ALLWLKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLK 155 (199)
T ss_pred HHHHHHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999999999888889999999999999999999999999999999999999974
No 3
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=281.36 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=143.9
Q ss_pred hhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhHHHHHHHhhhCccc
Q 030075 8 EKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSK 87 (183)
Q Consensus 8 ~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~ 87 (183)
..|+.++-.+|+-++.++ ..++++|++++|+.||+++++||++||++|+||.+|+..||++|.+...+||+.
T Consensus 7 ~~~~~~i~~~~~~i~~~v--------~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et 78 (209)
T KOG4189|consen 7 LGPLPKILQAFKTIEKSV--------IEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPET 78 (209)
T ss_pred ccchHHHHHHHHHHHHHh--------cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 568899999999999999 667778999999999999999999999999999999999999999998888776
Q ss_pred hhhHHHHHHHHHHcCCCCCCC--chhhHHHHHHhHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhhccccchhHHHHHH
Q 030075 88 YANVVEILKKEASEGNARKKT--SCSKAFLWLTRSLDFMVALLQRLAKDP-GQKMEQAVEESYNIALKPWHGWISSAAFK 164 (183)
Q Consensus 88 ~~TL~~mv~~E~~~g~~~k~~--S~tr~LLwL~RaL~Fi~~fl~~l~~~~-~~~l~~~a~~AY~~tL~~yH~w~vR~~~~ 164 (183)
|.| |++.++++...++.+ ||||+||+|+|||+|++.||+++...+ +++++++|++||++||+|||||+||++++
T Consensus 79 ~rt---ild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV~ 155 (209)
T KOG4189|consen 79 YRT---ILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAVA 155 (209)
T ss_pred HHH---HHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHHH
Confidence 666 555555555444444 999999999999999999999998875 57999999999999999999999999999
Q ss_pred HhcccCCCcchhhhh
Q 030075 165 VMIPPYPISSIYQIF 179 (183)
Q Consensus 165 ~A~~~~P~R~~F~~~ 179 (183)
+|||++|+|.+|+-.
T Consensus 156 ~amYtLPTR~~lL~~ 170 (209)
T KOG4189|consen 156 AAMYTLPTRPELLCR 170 (209)
T ss_pred HHHHhCCCcHHHHHH
Confidence 999999999998753
No 4
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=54.64 E-value=21 Score=31.60 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=43.2
Q ss_pred cchhHHHHHHHHHhHHHHHHHhhh---------------CccchhhHHHHHHHHHHcCCCCCCCchhhHHHHHHhHHHHH
Q 030075 60 GPTMLVLRQDIHQNIQRLEKFCEL---------------DPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFM 124 (183)
Q Consensus 60 G~~F~fv~~Dv~~nI~kL~~~~~~---------------~~~~~~TL~~mv~~E~~~g~~~k~~S~tr~LLwL~RaL~Fi 124 (183)
-..|+|+.+- ++||.+|....+. +-..+.||+.+...|++... ++.+-|.|+ .||
T Consensus 119 E~lfSFiCSS-NNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~FPsl~~L~g~~~Ea~L-R~~gfGYRA--------kYI 188 (323)
T KOG2875|consen 119 ECLFSFICSS-NNNIARITGMVERFCQAFGPRIIQLDGVDYHGFPSLQALAGPEVEAEL-RKLGFGYRA--------KYI 188 (323)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHhhCcceEeecCcccccCccHHHhcCcHhHHHH-HHcCcchhH--------HHH
Confidence 3457777776 7899998877652 33568999999887766643 223344444 466
Q ss_pred HHHHHHHHcCCC
Q 030075 125 VALLQRLAKDPG 136 (183)
Q Consensus 125 ~~fl~~l~~~~~ 136 (183)
..-.+.|.+.++
T Consensus 189 ~~ta~~l~~~~g 200 (323)
T KOG2875|consen 189 SATARALQEKQG 200 (323)
T ss_pred HHHHHHHHHhcc
Confidence 666666665543
No 5
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=49.40 E-value=15 Score=25.78 Aligned_cols=55 Identities=11% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCC-cHH--HHHHHHHHhhhccccchhHHHHHHHhcccCCC
Q 030075 117 LTRSLDFMVALLQRLAKDPGQ-KME--QAVEESYNIALKPWHGWISSAAFKVMIPPYPI 172 (183)
Q Consensus 117 L~RaL~Fi~~fl~~l~~~~~~-~l~--~~a~~AY~~tL~~yH~w~vR~~~~~A~~~~P~ 172 (183)
..++++.+...+.+++..|++ +.. ....+++.+.+.+++| .+.=...+++...+.
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g-~~~~L~~~GF~~~~~ 63 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG-ARELLEALGFREVTD 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT-HHHHHHHHT-EE---
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh-HHHHHHHCCCEEecC
Confidence 467899999999999998863 333 3367899999999999 555555555555544
No 6
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=46.05 E-value=37 Score=29.31 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhHHHHHHHhhhCccchhhHHHHH
Q 030075 37 RIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEIL 95 (183)
Q Consensus 37 ~~~I~~~~fl~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv 95 (183)
.++++++-+|+.+..||.+|... .+..+|..|+..|..-...-..|++-|
T Consensus 154 ~~d~dvevLL~~ae~L~~vYP~~---------ga~eki~~Lr~~y~~l~~~i~~lE~~V 203 (259)
T PF08657_consen 154 VEDVDVEVLLRGAEKLCNVYPLP---------GAREKIAALRQRYNQLSNSIAYLEAEV 203 (259)
T ss_pred cccCCHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999766 455566666665554333333344333
No 7
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=45.24 E-value=83 Score=26.32 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcc---------hhHHHHHHHHHhHHHHHHHh
Q 030075 11 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGP---------TMLVLRQDIHQNIQRLEKFC 81 (183)
Q Consensus 11 ~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~---------~F~fv~~Dv~~nI~kL~~~~ 81 (183)
.+.++.++++|+..+..+ +.++-+-.+..|..+-++|..+.+.|=. .-+|++.|+.+-....++.+
T Consensus 39 ~~~F~~aL~~~g~~~~~~-----~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~f 113 (215)
T cd07604 39 ELQFAEALEKLGSKALSR-----EEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPF 113 (215)
T ss_pred HHHHHHHHHHHhccccCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567888899998766311 0011123467888899999998888722 13888999866333777777
Q ss_pred hhCccchhhHHHHHHHHHH
Q 030075 82 ELDPSKYANVVEILKKEAS 100 (183)
Q Consensus 82 ~~~~~~~~TL~~mv~~E~~ 100 (183)
+.....|.+..+-+..++.
T Consensus 114 dK~s~~ye~~~~k~~k~Kk 132 (215)
T cd07604 114 DKAWKDYETKASKIEKEKK 132 (215)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 7666666665555555433
No 8
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=44.54 E-value=7 Score=28.54 Aligned_cols=13 Identities=38% Similarity=1.140 Sum_probs=10.4
Q ss_pred HHhhhccccchhH
Q 030075 147 YNIALKPWHGWIS 159 (183)
Q Consensus 147 Y~~tL~~yH~w~v 159 (183)
+.-+|.|+|||.+
T Consensus 81 fav~~~pfhgw~i 93 (95)
T PF13496_consen 81 FAVMLGPFHGWSI 93 (95)
T ss_pred eEEEecCcccccc
Confidence 3467899999986
No 9
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=44.46 E-value=51 Score=27.72 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=44.3
Q ss_pred hhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHhHHHHHH
Q 030075 8 EKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM-LVLRQDIHQNIQRLEK 79 (183)
Q Consensus 8 ~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F-~fv~~Dv~~nI~kL~~ 79 (183)
.|-+.+|..||..||..+-++ +..-+ ..+.+|....-..|+.+|..| .--+.|+.-=.+.|..
T Consensus 47 kkEyqkiG~af~~LsqaFe~d--------~~~~s-~~L~~Av~~tG~~y~~IG~~faeQpk~D~~pl~d~L~~ 110 (207)
T cd07669 47 RKEFQKLGNAFQAISHSFQLD--------PPYSS-EALNNAISHTGRTYEAVGEMFAEQPKNDLFQMLDTLSL 110 (207)
T ss_pred cHHHHHHHHHHHHHHHHHhcC--------CCccc-hHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 567889999999999999422 22222 278888888889999999888 3345665544444443
No 10
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=42.46 E-value=56 Score=27.53 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=43.9
Q ss_pred hhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHhHHHHHH
Q 030075 8 EKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM-LVLRQDIHQNIQRLEK 79 (183)
Q Consensus 8 ~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F-~fv~~Dv~~nI~kL~~ 79 (183)
.|-+.+|..||..||..+-+++ ..-++ .+.+|-...-..|+-+|..| .--+.|+.-=.+.|..
T Consensus 47 KkEyqkiG~af~~LsqaFe~d~--------~~~~~-~L~~Ai~~tg~~y~~IG~~faeQpk~Dl~pl~d~L~~ 110 (210)
T cd07668 47 PKEYQKIGKALQSLATVFSTSG--------YQGET-DLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETNHE 110 (210)
T ss_pred cHHHHHHHHHHHHHHHHHhcCC--------cccch-HHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5678899999999999994333 33333 58888888888888888887 3345665544444443
No 11
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=41.74 E-value=82 Score=21.47 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhH
Q 030075 14 IRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTML 64 (183)
Q Consensus 14 ~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F~ 64 (183)
+..+|++|-..|. +-.++++++++-++.+.+=+.+.........
T Consensus 3 fEe~l~~Le~Iv~-------~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~ 46 (67)
T TIGR01280 3 FEEALSELEQIVQ-------KLESGDLALEEALNLFERGMALARRCEKKLA 46 (67)
T ss_pred HHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888886 6689999999999999998888876655443
No 12
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=39.21 E-value=78 Score=22.20 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh
Q 030075 13 EIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM 63 (183)
Q Consensus 13 ~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F 63 (183)
.+..+|.+|-..|. +-.++++++++-+..+.+=+.+........
T Consensus 6 sfEeal~~LE~Iv~-------~LE~~~l~Leesl~lyeeG~~L~k~C~~~L 49 (76)
T PRK14063 6 SFEEAISQLEHLVS-------KLEQGDVPLEEAISYFKEGMELSKLCDEKL 49 (76)
T ss_pred CHHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888888875 667999999999999999888876554443
No 13
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.61 E-value=69 Score=26.42 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhc---------chhHHHHHHHHHhHHHHHHHhh
Q 030075 12 SEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIG---------PTMLVLRQDIHQNIQRLEKFCE 82 (183)
Q Consensus 12 ~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG---------~~F~fv~~Dv~~nI~kL~~~~~ 82 (183)
+.++.++++|..-++ +.+.-.-.+..|.++.+++......|= +.-+|++.|+. .++..++.++
T Consensus 40 ~~F~~~L~~~~~~~~-------~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~-~vKE~kk~Fd 111 (200)
T cd07603 40 SLFVNSLNDLSDYFR-------DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIK-KVKESKKHFE 111 (200)
T ss_pred HHHHHHHHHHhcccC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 346666666666442 101112335577777777777776662 22488999987 4888888887
Q ss_pred hCccchhh
Q 030075 83 LDPSKYAN 90 (183)
Q Consensus 83 ~~~~~~~T 90 (183)
.....|.+
T Consensus 112 k~s~~yd~ 119 (200)
T cd07603 112 KISDDLDN 119 (200)
T ss_pred HHHHHHHH
Confidence 66665554
No 14
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.02 E-value=76 Score=26.70 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=43.6
Q ss_pred hhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHhHHHHHH
Q 030075 8 EKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM-LVLRQDIHQNIQRLEK 79 (183)
Q Consensus 8 ~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F-~fv~~Dv~~nI~kL~~ 79 (183)
.|-+.+|..||..||..+-+++ ..-+ .++-+|....-..|+.+|..| .--+.|+.-=.+.|..
T Consensus 47 KkEyqkiG~af~~LsqaF~~d~--------~~~s-~~L~~Av~~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~ 110 (207)
T cd07670 47 KKEYQKVGQSFKGLSQAFELDQ--------QAFS-AGLNQAIAFTGEAYEAIGELFAEQPRQDLDPVMDLLAL 110 (207)
T ss_pred cHHHHHHHHHHHHHHHHHccCC--------cccc-hHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5667889999999999994332 2222 278888888888888888887 3445565554444443
No 15
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.72 E-value=81 Score=26.23 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhh---------cchhHHHHHHHHHhHHHHHHHhhhCccchhh
Q 030075 38 IHIPTKPFLHLCNLVLQVLDKI---------GPTMLVLRQDIHQNIQRLEKFCELDPSKYAN 90 (183)
Q Consensus 38 ~~I~~~~fl~a~~~l~~~fd~L---------G~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~T 90 (183)
.+-.+..|..+-++|...++.| .+.-+|++.|+. .++-.++.++.....|.+
T Consensus 59 i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~-~vKe~kK~FdK~s~~~d~ 119 (200)
T cd07639 59 MAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLR-GFRDARKEFERGAESLEA 119 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHhhhHhhcchhHHH
Confidence 3345668888888887776665 122378999985 588888888776666555
No 16
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=34.95 E-value=2.2e+02 Score=23.57 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred hhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh
Q 030075 8 EKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM 63 (183)
Q Consensus 8 ~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F 63 (183)
.|-+.+|+.||..||..+-++.. -.-..+..|-..+-..++.+|..|
T Consensus 39 kkeyqk~G~af~~L~~af~~d~~---------~~~t~Ls~Al~~~g~~~e~Ig~l~ 85 (199)
T cd07626 39 KKEYQKIGQAFTSLGTAFELDET---------PTSVPLTQAIKHTGQAYEEIGELF 85 (199)
T ss_pred hHHHHHHHHHHHHHHHHHccCCC---------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999943333 222366677777777777777665
No 17
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=34.90 E-value=1.6e+02 Score=24.22 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=38.4
Q ss_pred hhhhhhhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcc----hhHHHHHHHHHhHHHHH
Q 030075 3 RRREIEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGP----TMLVLRQDIHQNIQRLE 78 (183)
Q Consensus 3 ~~~~~~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~----~F~fv~~Dv~~nI~kL~ 78 (183)
+|++......+++.+|..|+.+= .+++-.-.+..|-+....+..++..... .|+..-.|+.+-+.-++
T Consensus 33 ~r~ela~~~~efa~~~~~L~~~E--------~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk 104 (216)
T cd07627 33 QRKELASATEEFAETLEALSSLE--------LSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVR 104 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888888888888743 1112222234455555555555554422 13334456666665555
Q ss_pred HHhh
Q 030075 79 KFCE 82 (183)
Q Consensus 79 ~~~~ 82 (183)
..+.
T Consensus 105 ~~~~ 108 (216)
T cd07627 105 AAFA 108 (216)
T ss_pred HHHH
Confidence 5443
No 18
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.12 E-value=64 Score=18.81 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhcch
Q 030075 37 RIHIPTKPFLHLCNLVLQVLDKIGPT 62 (183)
Q Consensus 37 ~~~I~~~~fl~a~~~l~~~fd~LG~~ 62 (183)
.+.|..++|++++..+..|.+.=|..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 46688999999999999999887753
No 19
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=31.09 E-value=3.3e+02 Score=23.04 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCCCChH--HHHHHHHHHHHHHhhh----cch--h---HHHHHHHHHhHHHHHHHhh
Q 030075 14 IRSAIEELSMFIKLKPKDNLDAPRIHIPTK--PFLHLCNLVLQVLDKI----GPT--M---LVLRQDIHQNIQRLEKFCE 82 (183)
Q Consensus 14 ~~~a~eel~~~~~~~~~~~~~~~~~~I~~~--~fl~a~~~l~~~fd~L----G~~--F---~fv~~Dv~~nI~kL~~~~~ 82 (183)
++.++|.|....- ..++++|.+. .|.-..+++..+|..| ..+ | +|++.|+.+-=..+.+.++
T Consensus 42 ~~~~le~lg~~~l-------~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~Fe 114 (213)
T cd07640 42 YTEALENLGNSHL-------SQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQME 114 (213)
T ss_pred HHHHHHHHhhhhh-------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHH
Confidence 4566777766553 2344556553 5666778888888877 222 3 8888888753324444444
Q ss_pred hCccchhh
Q 030075 83 LDPSKYAN 90 (183)
Q Consensus 83 ~~~~~~~T 90 (183)
...+.|.+
T Consensus 115 K~skDyE~ 122 (213)
T cd07640 115 KAWKDYEA 122 (213)
T ss_pred HHHHHHHH
Confidence 33444444
No 20
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.33 E-value=1.8e+02 Score=24.02 Aligned_cols=48 Identities=6% Similarity=0.077 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHhhhcc---------hhHHHHHHHHHhHHHHHHHhhhCccchh
Q 030075 41 PTKPFLHLCNLVLQVLDKIGP---------TMLVLRQDIHQNIQRLEKFCELDPSKYA 89 (183)
Q Consensus 41 ~~~~fl~a~~~l~~~fd~LG~---------~F~fv~~Dv~~nI~kL~~~~~~~~~~~~ 89 (183)
.+..|..+-++|....+.|-. .-.|++.|+.+ ++-.++.++.....|.
T Consensus 64 ~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~-vKe~kK~FdK~s~~yd 120 (202)
T cd07606 64 VMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADTDLQE-VKDARRRFDKASLDYE 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 578999999999998888743 23889989875 7777777765544443
No 21
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.15 E-value=1.9e+02 Score=23.50 Aligned_cols=70 Identities=9% Similarity=-0.042 Sum_probs=43.9
Q ss_pred hhhhhhhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHhHHHHH
Q 030075 3 RRREIEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKI----GPTMLVLRQDIHQNIQRLE 78 (183)
Q Consensus 3 ~~~~~~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~L----G~~F~fv~~Dv~~nI~kL~ 78 (183)
++++....+++++.+|..|+.+= ++-.-.+..+.++...+....+.+ ...|..--+|+.+-+..++
T Consensus 43 r~~el~~~~~efg~~~~~ls~~E----------~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk 112 (200)
T cd07624 43 ERIEYFDELKEYSPIFQLWSASE----------TELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVK 112 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45577888889999999888633 111233445555555555544444 3346666678888888777
Q ss_pred HHhh
Q 030075 79 KFCE 82 (183)
Q Consensus 79 ~~~~ 82 (183)
....
T Consensus 113 ~~l~ 116 (200)
T cd07624 113 DVLK 116 (200)
T ss_pred HHHH
Confidence 6543
No 22
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.79 E-value=1.7e+02 Score=20.48 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcc
Q 030075 13 EIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGP 61 (183)
Q Consensus 13 ~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~ 61 (183)
.+..+|++|-..|. +-.++++++++-++.+..=+.+....-.
T Consensus 7 sfEeal~~Le~IV~-------~LE~gdl~Leesl~lyeeG~~L~k~C~~ 48 (76)
T PRK14068 7 SFEEMMQELEQIVQ-------KLDNETVSLEESLDLYQRGMKLSAACDT 48 (76)
T ss_pred CHHHHHHHHHHHHH-------HHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888886 6689999999999999988887755443
No 23
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=27.61 E-value=1.2e+02 Score=22.80 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhhhccCCCCCCCCCCCCCChH----HHHHHHHHHHHHHhh
Q 030075 11 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTK----PFLHLCNLVLQVLDK 58 (183)
Q Consensus 11 ~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~----~fl~a~~~l~~~fd~ 58 (183)
..|||.||+..=+++- .-.|.++-++ +++++|+.++++=..
T Consensus 14 KvEIa~AI~kpFPfl~-------gLrD~~~ItE~~y~e~~e~crnlvpv~rv 58 (103)
T PF03172_consen 14 KVEIAYAITKPFPFLE-------GLRDHSFITEQMYKESQEACRNLVPVQRV 58 (103)
T ss_pred HHHHHHHHcccchHHH-------HhhhcccccHHHHHHHHHHHhccccHHHH
Confidence 4688888887777763 5577777665 577888877765433
No 24
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.39 E-value=1.8e+02 Score=20.45 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHHHHHHHHhHHHH
Q 030075 13 EIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRL 77 (183)
Q Consensus 13 ~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL 77 (183)
.+..+|++|-..|. +-.+++++++.-++.+..=+.+....-.... ++..+|..|
T Consensus 11 sfEea~~~LEeIv~-------~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~----~ae~ki~~l 64 (80)
T PRK00977 11 SFEEALAELEEIVT-------RLESGDLPLEESLAAFERGVALARQCQKKLQ----QAEQRVEKL 64 (80)
T ss_pred CHHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 37788888888886 6688999999999999988888765544332 334444444
No 25
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=27.22 E-value=1.3e+02 Score=19.24 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhh
Q 030075 15 RSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKI 59 (183)
Q Consensus 15 ~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~L 59 (183)
..++++|...+. +-.++++++++-++.+.+-..++...
T Consensus 2 Ee~~~~Le~Iv~-------~Le~~~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 2 EEAMERLEEIVE-------KLESGELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHHHHH-------HHHTT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 456666666664 44678899999988888877776543
No 26
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.62 E-value=4.3e+02 Score=22.97 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHhHHHHHHHhhhCccchhhHHHHHHHHHHcCCCCCCCchhhHHHHHHhHHHHHHH
Q 030075 47 HLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVA 126 (183)
Q Consensus 47 ~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~k~~S~tr~LLwL~RaL~Fi~~ 126 (183)
.+..-+..++|.+-..+.++-..+...++.|++....++.+ ..++.+... -+.++.++|+|.=...
T Consensus 136 ~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~-~~l~~l~~l-------------~~~l~~lr~~l~~~~~ 201 (322)
T COG0598 136 GADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN-EELERLGEL-------------RRSLVYLRRALAPLRD 201 (322)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHH-------------HHHHHHHHHHHHhHHH
Confidence 34455666888888888899999999999999876655554 445555544 3456777777777777
Q ss_pred HHHHHHcCC
Q 030075 127 LLQRLAKDP 135 (183)
Q Consensus 127 fl~~l~~~~ 135 (183)
.+..+...+
T Consensus 202 ~l~~l~~~~ 210 (322)
T COG0598 202 VLLRLARRP 210 (322)
T ss_pred HHHHHHhcC
Confidence 777776554
No 27
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.20 E-value=2.5e+02 Score=23.14 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHhhhc---------chhHHHHHHHHHhHHHHHHHhhhCccchhhH
Q 030075 42 TKPFLHLCNLVLQVLDKIG---------PTMLVLRQDIHQNIQRLEKFCELDPSKYANV 91 (183)
Q Consensus 42 ~~~fl~a~~~l~~~fd~LG---------~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL 91 (183)
+..|.++.+++......|= +.-.|++.|+. .++..++.++...++|.+.
T Consensus 63 L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~-~~KE~rK~Fdk~se~yd~a 120 (200)
T cd07637 63 LDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVR-KFKETKKQFDKVREDLEIA 120 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 3678888888877766652 23488999986 5888888888777766543
No 28
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=26.02 E-value=43 Score=22.48 Aligned_cols=40 Identities=10% Similarity=0.270 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhhhccccch-hHHHHHHH
Q 030075 125 VALLQRLAKDPGQKMEQAVEESYNIALKPWHGW-ISSAAFKV 165 (183)
Q Consensus 125 ~~fl~~l~~~~~~~l~~~a~~AY~~tL~~yH~w-~vR~~~~~ 165 (183)
+.-++.++.. +..+...|++||-.-++-|+.- -.+.+|.+
T Consensus 3 q~~l~~~~~~-d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~ 43 (65)
T PF13959_consen 3 QQKLEKLVAK-DRELKELAQKAFVSYVRAYASHKELKDIFNV 43 (65)
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhhhhhhCCc
Confidence 3445665543 5679999999999999988877 66665543
No 29
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=25.58 E-value=5.3e+02 Score=23.65 Aligned_cols=127 Identities=10% Similarity=0.002 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHhHHHHHHHhhhCccchhhHHHHHHHHHHcCCCCC--CCchhhHHHHHH---
Q 030075 44 PFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARK--KTSCSKAFLWLT--- 118 (183)
Q Consensus 44 ~fl~a~~~l~~~fd~LG~~F~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~k--~~S~tr~LLwL~--- 118 (183)
.|=.+..+|+-.+ ++..=-.||-.++.....--....-+|.=.-+||+++=+.+- ...-++- ||.+
T Consensus 203 ~~~~~~~EI~M~~--------La~~iksgn~~~I~~AI~~~~~~~~pL~lyrKYeI~~LI~~~~~~~~~A~~-L~~~I~~ 273 (370)
T PF07149_consen 203 RFDAAIMEICMRN--------LAQSIKSGNEEKISAAIKFFGEFEFPLELYRKYEIQRLIEKHGIHNEDAMD-LIDKIEE 273 (370)
T ss_pred hhHHHHHHHHHHH--------HHHHHhcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHH
Confidence 5666666666554 444434455555554433333334455555666666532211 0111222 4444
Q ss_pred --------hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhccccchhHHHHHHHhcccCCCcchhhhhhc
Q 030075 119 --------RSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVMIPPYPISSIYQIFHI 181 (183)
Q Consensus 119 --------RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~tL~~yH~w~vR~~~~~A~~~~P~R~~F~~~~~ 181 (183)
.-++++..|++..... +..++..-+--..-|...--++|.+++++-++.-=|+++|..|||
T Consensus 274 ~ee~~m~~e~~E~F~~fl~~~~~~--~~~~d~vm~vl~~yl~~~dd~~v~~vv~~fL~~~VTl~QF~~~~i 342 (370)
T PF07149_consen 274 LEEEEMADEKLEAFKEFLKETMEE--NEVSDSVMEVLMGYLENGDDYFVDQVVKFFLKMPVTLEQFENFDI 342 (370)
T ss_pred HHHHHhhhhHHHHHHHHHHhhccc--CCCcHHHHHHHHHHhcccchhhHHHHHHHHHcCCccHHHHHHhhH
Confidence 4567777777754322 334444444334446666788999999999999999999999997
No 30
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.09 E-value=1.5e+02 Score=20.09 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 030075 13 EIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQ 54 (183)
Q Consensus 13 ~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~ 54 (183)
.+.++|.-|+.-+. ++.|+++.|++..+.+..
T Consensus 23 AieDtiy~L~~al~----------~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 23 AIEDTIYYLDRALQ----------RGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHH----------TTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------cCCCCHHHHHHHHHHHHH
Confidence 57788888888883 667999999999988764
No 31
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.23 E-value=2.3e+02 Score=19.77 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhc
Q 030075 13 EIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIG 60 (183)
Q Consensus 13 ~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG 60 (183)
.+..+|++|-..|. +-.++++++++-++.+.+=+.+....-
T Consensus 5 ~fEeal~~LE~IV~-------~LE~g~l~Leesl~lyeeG~~L~k~C~ 45 (75)
T PRK14066 5 KFETALKKLEEVVK-------KLEGGELSLDDSLKAFEEGVKHAAFCS 45 (75)
T ss_pred cHHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 37888889988886 668999999999999998888775443
No 32
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.02 E-value=3.1e+02 Score=23.45 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=28.0
Q ss_pred hhhchHHHHHHHHHHhhhhccCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchh
Q 030075 7 IEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTM 63 (183)
Q Consensus 7 ~~~~~~~~~~a~eel~~~~~~~~~~~~~~~~~~I~~~~fl~a~~~l~~~fd~LG~~F 63 (183)
++.||+.++.+++.++.... ..-.-..+.|++.-++.+...+.+-.+|
T Consensus 108 L~~~L~~~a~~~d~~~~~~~---------~~~~~l~~~f~~~Lkeyv~y~~slK~vl 155 (243)
T cd07666 108 LADSLKGMASCIDRCCKATD---------KRMKGLSEQLLPVIHEYVLYSETLMGVI 155 (243)
T ss_pred hhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777774443331 0011223377777777777777776565
No 33
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=22.46 E-value=1.3e+02 Score=25.24 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCCCCCCCchhhHHHHHHhHHHHHHHHHHH
Q 030075 89 ANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVALLQR 130 (183)
Q Consensus 89 ~TL~~mv~~E~~~g~~~k~~S~tr~LLwL~RaL~Fi~~fl~~ 130 (183)
.|.++|.+.|...+ ..+.|+-|++-|+..|+.-
T Consensus 166 ~s~~e~f~~~~~~n---------~~~tW~lR~~G~llmf~G~ 198 (248)
T PF07787_consen 166 VSAEEMFAKEHSAN---------NTLTWILRFIGWLLMFIGF 198 (248)
T ss_pred cCHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHH
Confidence 57888888776664 5789999999999999864
No 34
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=21.87 E-value=1.9e+02 Score=28.19 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHhh-h--cchhHHHHHHHHH-hHHHHHHHhhhCccchhhHHHHHHHHHHcC
Q 030075 41 PTKPFLHLCNLVLQVLDK-I--GPTMLVLRQDIHQ-NIQRLEKFCELDPSKYANVVEILKKEASEG 102 (183)
Q Consensus 41 ~~~~fl~a~~~l~~~fd~-L--G~~F~fv~~Dv~~-nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g 102 (183)
....+++|...|. -|.. | |.-|.|+.=.+.. .++.|.+..++||+.|..++.+++--...+
T Consensus 515 ~~~~Li~a~~~Ls-~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~ 579 (715)
T PF08314_consen 515 REKDLIKATHALS-EFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLV 579 (715)
T ss_dssp HHHHHHHHHHHHT-TS-----------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHH
Confidence 3566777777664 3333 4 4468887765443 788888899999999999988876654443
No 35
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=21.83 E-value=27 Score=26.50 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.6
Q ss_pred hccccchhHHH
Q 030075 151 LKPWHGWISSA 161 (183)
Q Consensus 151 L~~yH~w~vR~ 161 (183)
+.-+|||++-.
T Consensus 87 I~LvHGWl~dp 97 (121)
T PF04424_consen 87 IPLVHGWLVDP 97 (121)
T ss_pred CCceeeeccCC
Confidence 56799999854
No 36
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=21.26 E-value=4.9e+02 Score=22.15 Aligned_cols=106 Identities=13% Similarity=0.251 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHhhh--c-------chh-HHHHHHHHHhHHHHHHHhhhCccchhhHHHHHHHHHHcCCCCCCCchh
Q 030075 42 TKPFLHLCNLVLQVLDKI--G-------PTM-LVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCS 111 (183)
Q Consensus 42 ~~~fl~a~~~l~~~fd~L--G-------~~F-~fv~~Dv~~nI~kL~~~~~~~~~~~~TL~~mv~~E~~~g~~~k~~S~t 111 (183)
-.+...-|.+++.++|.. - .+| .-.+.|+-.-+.-+..- +..+...=.+.=.|+......+..-+.+
T Consensus 89 e~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~---~e~~~~~~~a~~aY~~A~e~a~~~L~pt 165 (244)
T smart00101 89 ETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTG---AERKEAAENTLVAYKSAQDIALAELPPT 165 (244)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 346788899999999863 1 133 33566666555433210 0000000011222222222111112223
Q ss_pred hHHHHHHhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhcc
Q 030075 112 KAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKP 153 (183)
Q Consensus 112 r~LLwL~RaL~Fi~~fl~~l~~~~~~~l~~~a~~AY~~tL~~ 153 (183)
. -+||-=+|+|. +|+-.+..+++ +.-.+|++||+.+.+.
T Consensus 166 ~-PirLgLaLN~S-VF~yEI~~~~~-~A~~lAk~afd~Ai~~ 204 (244)
T smart00101 166 H-PIRLGLALNFS-VFYYEILNSPD-RACNLAKQAFDEAIAE 204 (244)
T ss_pred C-HHHHHHHHHHH-HHHHHHcCCHH-HHHHHHHHHHHHHHHH
Confidence 3 38899999997 56666666653 4567889999887653
Done!