BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030076
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 8/136 (5%)
Query: 52 SACIDST------VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 105
SA ID+T V I A++ S LG NV IG+G VG IG + + NV + +
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 106 CI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
I IG +C+I +G +G DGFG+ ++ GN +K PQ+ IG+ VEIGA + IDRG+
Sbjct: 163 EIQIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALD 221
Query: 165 DTVIGDHSKIDNLVQV 180
DT+IG+ IDN Q+
Sbjct: 222 DTIIGNGVIIDNQCQI 237
>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|B Chain B, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|C Chain C, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU9|A Chain A, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|B Chain B, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|C Chain C, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IUA|A Chain A, C. Trachomatis Lpxd
pdb|2IUA|B Chain B, C. Trachomatis Lpxd
pdb|2IUA|C Chain C, C. Trachomatis Lpxd
Length = 374
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Query: 20 FGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCI 79
F + LF T D F H + H +A I+ V IE A+V A +G+ I
Sbjct: 109 FQKCLELFITPVD----SGFPGIHPTA-VIHPTAIIEDHVCIEPYAVVCQHAHVGSACHI 163
Query: 80 GSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
GSG+V+G T+G+ + I V + + IG II G IG GFG+ G
Sbjct: 164 GSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHL 223
Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
L I + VEIGAN+ IDRG ++ +V+ + SKIDNLVQ+
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIA 266
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNC 106
I A +D + + A++ S A +GA V IG+ V+G IG+ + V L +
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186
Query: 107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
IG I +G IG +GFGF +E G K Q+ IG+ VEIGAN+ IDRG+ DT
Sbjct: 187 TIGARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDT 245
Query: 167 VIGDHSKIDNLVQV 180
+IG+ K+DN + +
Sbjct: 246 LIGNGVKLDNQIMI 259
>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|D Chain D, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|E Chain E, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|F Chain F, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E79|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
Length = 357
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIG- 109
S I+ST I A++ A +G V IG VVG I T + NV + +C I
Sbjct: 102 STGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDS 161
Query: 110 -----------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
D IH+ IG +GFGF G + QL + IGN V IG+N I
Sbjct: 162 YVTITGSSKLRDRVRIHSSTVIGGEGFGF-APYQGKWHRIAQLGSVLIGNDVRIGSNCSI 220
Query: 159 DRGSWRDTVIGDHSKIDNLVQVG 181
DRG+ +T++ D IDNLVQ+
Sbjct: 221 DRGALDNTILEDGVIIDNLVQIA 243
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------SNCII 108
DS VLI A+VH AV IG G VGP TIG S +G L N +
Sbjct: 5 DSEVLIHPSAVVHPNAV------IGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTEL 58
Query: 109 GDSCIIHNGVCIGQDGFGF-------FVDEHGNMLKKPQLLNAR--------IGNHVEIG 153
G+SC++ G +G + G+ + H + K Q L + IGN+ EI
Sbjct: 59 GESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIR 118
Query: 154 ANSCIDRGSWRD--TVIGDHSKI 174
I R S TVIGD++ I
Sbjct: 119 EFCSIHRSSKPSDKTVIGDNNLI 141
>pdb|3CJ8|A Chain A, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
pdb|3CJ8|B Chain B, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
pdb|3CJ8|C Chain C, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
Length = 236
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 105
G + + I +I GAI++ AV+GA I G V+G T+G+ +IG L+
Sbjct: 97 GALIREKVEIGDQAVIXXGAILNIGAVVGAGTXIDXGAVLGGRATVGKHCHIGAGTVLAG 156
Query: 106 CIIGDSC---IIHNGVCIGQDG 124
I S +I N V IG +
Sbjct: 157 VIEPPSAAPVVIENEVVIGANA 178
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI---------------GQSTNIGF 99
ID V I ++H L IG VVGP T+ G S++IG
Sbjct: 280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGD 339
Query: 100 NVALSNCIIGDSCIIHNGVCIGQDG-FGFFVDEH----GNMLKKPQLL---NARIGNHVE 151
A +G + G +G DG G FV+ G K P L +A IG +
Sbjct: 340 GAA-----VGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSN 394
Query: 152 IGANSCI---DRGSWRDTVIGDHSK 173
IGA+S D S R T +G H +
Sbjct: 395 IGASSVFVNYDGTSKRRTTVGSHVR 419
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI---------------GQSTNIGF 99
ID V I ++H L IG VVGP T+ G S++IG
Sbjct: 274 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGD 333
Query: 100 NVALSNCIIGDSCIIHNGVCIGQDG-FGFFVDEH----GNMLKKPQLL---NARIGNHVE 151
A +G + G +G DG G FV+ G K P L +A IG +
Sbjct: 334 GAA-----VGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSN 388
Query: 152 IGANSCI---DRGSWRDTVIGDHSK 173
IGA+S D S R T +G H +
Sbjct: 389 IGASSVFVNYDGTSKRRTTVGSHVR 413
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI---------------GQSTNIGF 99
ID V I ++H L IG VVGP T+ G S++IG
Sbjct: 282 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGD 341
Query: 100 NVALSNCIIGDSCIIHNGVCIGQDG-FGFFVDEH----GNMLKKPQLL---NARIGNHVE 151
A +G + G +G DG G FV+ G K P L +A IG +
Sbjct: 342 GAA-----VGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSN 396
Query: 152 IGANSCI---DRGSWRDTVIGDHSK 173
IGA+S D S R T +G H +
Sbjct: 397 IGASSVFVNYDGTSKRRTTVGSHVR 421
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 95
+ ID + + AIV A +GAN IG +VGP V IG+ T
Sbjct: 2 SMIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGT 44
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 60 LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII 108
+I+ A VH A++ IG+ +GP +G IG L + ++
Sbjct: 3 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVV 51
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 95
ID + + AIV A +GAN IG +VGP V IG+ T
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGT 42
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 60 LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII 108
+I+ A VH A++ IG+ +GP +G IG L + ++
Sbjct: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVV 49
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103
++ Q A + LI AI+ AV+ ++V IG ++GP VTIG T + +V +
Sbjct: 26 LYFQGAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVV 81
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL---- 103
I A + TV + AIV S +GA IGS +V+ TIG+ IG ++
Sbjct: 30 IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRP 89
Query: 104 ---------SNCIIGDS------CIIHNGVCIGQD-GFGFFVDEHGNMLKKPQLLNARIG 147
+ +IGD IH G QD G D++ M + R+G
Sbjct: 90 QDMKYKDEPTRLVIGDRNTIREFTTIHTGTV--QDAGVTTLGDDNWIMAYVHIGHDCRVG 147
Query: 148 NHVEIGANSC----IDRGSWRDTVIGDHSKIDNLVQVG 181
+HV + +N+ ++ G W ++G S + V++G
Sbjct: 148 SHVVLSSNAQMAGHVEIGDW--AIVGGMSGVHQYVRIG 183
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 95
I H SA + LI +G+I+ +A +G IG+G++V P I +T
Sbjct: 85 ILH-SAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNT 131
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 100
+ H +A ID + +I + ++G V IG+GT + V +G T IG N
Sbjct: 9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQN 61
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 129
K V+G NV +GS + + V +G ++ +G ++ + D+ I G I +D + +
Sbjct: 393 KTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKDEYATRL 452
Query: 130 DEH 132
H
Sbjct: 453 PHH 455
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 129
K V+G NV +GS + + V +G ++ +G ++ + D+ I G I +D + +
Sbjct: 402 KTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKDEYATRL 461
Query: 130 DEH 132
H
Sbjct: 462 PHH 464
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 129
K V+G NV +GS + + V +G ++ +G ++ + D+ I G I +D + +
Sbjct: 393 KTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKDEYATRL 452
Query: 130 DEH 132
H
Sbjct: 453 PHH 455
>pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
Length = 203
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 64 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG 98
G + +G NV IGS V+ P VTIG ++ IG
Sbjct: 125 GEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIG 159
>pdb|3SRT|A Chain A, The Crystal Structure Of A Maltose O-Acetyltransferase
From Clostridium Difficile 630
pdb|3SRT|B Chain B, The Crystal Structure Of A Maltose O-Acetyltransferase
From Clostridium Difficile 630
pdb|4ISX|A Chain A, The Crystal Structure Of Maltose O-acetyltransferase From
Clostridium Difficile 630 In Complex With Acetyl-coa
pdb|4ISX|B Chain B, The Crystal Structure Of Maltose O-acetyltransferase From
Clostridium Difficile 630 In Complex With Acetyl-coa
Length = 188
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHN 116
S +G NV IG G ++ P +TIG + IG ++ I ++ + N
Sbjct: 131 SPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGN 178
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
G +V I + ++ VT+G IG + N +IGD C I
Sbjct: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEI 309
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-----PQ-------------LLNAR 145
IIG+ C I+ V +G F E G ++K+ P L N
Sbjct: 190 ETAIIGEWCRIYQSVTLGAMHF----QEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 245
Query: 146 IGNHVEIGANSCIDR 160
+G+HV IGAN IDR
Sbjct: 246 VGSHVRIGANCWIDR 260
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-----PQ-------------LLNAR 145
IIG+ C I+ V +G F E G ++K+ P L N
Sbjct: 189 ETAIIGEWCRIYQSVTLGAMHF----QEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 244
Query: 146 IGNHVEIGANSCIDR 160
+G+HV IGAN IDR
Sbjct: 245 VGSHVRIGANCWIDR 259
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
G +V I + ++ VT+G IG + N +IGD C I
Sbjct: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEI 309
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-----PQ-------------LLNAR 145
IIG+ C I+ V +G F E G ++K+ P L N
Sbjct: 188 ETAIIGEWCRIYQSVTLGAMHF----QEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 243
Query: 146 IGNHVEIGANSCIDR 160
+G+HV IGAN IDR
Sbjct: 244 VGSHVRIGANCWIDR 258
>pdb|2RIJ|A Chain A, Crystal Structure Of A Putative
2,3,4,5-tetrahydropyridine-2- Carboxylate
N-succinyltransferase (cj1605c, Dapd) From Campylobacter
Jejuni At 1.90 A Resolution
Length = 387
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 67 VHSKAVLGANVCIGSGTVV--------GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 118
+ S A++G +G G + G A+++G++ +G N +++ +GD+CI+ G+
Sbjct: 261 ISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGAN-SVTGIPLGDNCIVDAGI 319
Query: 119 CIGQDGFGFFVDEHGNMLK 137
+ +G F + + + K
Sbjct: 320 AV-LEGTKFLLKDAEELAK 337
>pdb|3VBL|A Chain A, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|C Chain C, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|E Chain E, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
Length = 205
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 54 CIDSTVLIEVGAIVHSKAVL--GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDS 111
+ VLI A +++ V+ G NV I ++ VTIG ++I AL +G
Sbjct: 34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIE 93
Query: 112 CIIHNGVCIGQDGFGFFVDEHGNMLKKP----QLLNARIG-----NHVEIGANSCIDRGS 162
+C + D GN L P Q N + G HV IGA+S I
Sbjct: 94 MYDFANICSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSII---- 149
Query: 163 WRDTVIGD 170
+ + VIG+
Sbjct: 150 FPNVVIGE 157
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 37 QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
+Q +K G + A D G + H G +V I + ++ VT+G
Sbjct: 17 EQAEKLLLAGVMLRDPARFDLR-----GTLTH-----GRDVEIDTNVIIEGNVTLGHRVK 66
Query: 97 IGFNVALSNCIIGDSCII 114
IG + N +IGD C I
Sbjct: 67 IGTGCVIKNSVIGDDCEI 84
>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family
Protein From Anaplasma Phagocytophilum
Length = 191
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Query: 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSN--- 105
S +DST I A + +G N I GTV+ + +G+ TNI N +
Sbjct: 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSM 92
Query: 106 ---------CIIGDSCIIHNGVCIGQDGF----GFFVD----EHGNMLKKPQLLN 143
IG SCI+H +G + F +D E G+ML LL
Sbjct: 93 HGDTVIGKFVTIGHSCILH-ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLT 146
>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2P2O|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|D Chain D, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|E Chain E, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|F Chain F, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
Length = 185
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCI 113
V+G NV IG V+ P VTIG + I ++ + ++ +
Sbjct: 129 KPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVV 173
>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter
Jejuni
Length = 266
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
I S +I G +G D ++ + + K +A+IGN+V I + I DT
Sbjct: 7 IHPSAVIEEGAQLGDD---VVIEAYAYVSK-----DAKIGNNVVIKQGARI----LSDTT 54
Query: 168 IGDHSKIDNLVQVG 181
IGDHS++ + VG
Sbjct: 55 IGDHSRVFSYAIVG 68
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 44 NGGGIFHQSACIDS------TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 97
N H SA I+ V+IE A V A +G NV I G + TIG + +
Sbjct: 2 NAXKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV 61
Query: 98 GFNVALSNCIIGD 110
S I+GD
Sbjct: 62 -----FSYAIVGD 69
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
G ++ I + ++ V +G IG L NC+IGD I
Sbjct: 272 GRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEI 312
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
G ++ I + ++ V +G IG L NC+IGD I
Sbjct: 269 GRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEI 309
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
G +V I + ++ VT+G IG + N +IGD C I
Sbjct: 38 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEI 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,610,410
Number of Sequences: 62578
Number of extensions: 227973
Number of successful extensions: 789
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 116
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)