Query 030076
Match_columns 183
No_of_seqs 129 out of 1508
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 1.9E-23 4.1E-28 163.1 15.1 140 42-182 101-241 (338)
2 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 1E-21 2.2E-26 156.7 17.5 140 42-181 93-233 (324)
3 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 2E-20 4.4E-25 150.7 16.7 140 42-182 102-242 (343)
4 cd05636 LbH_G1P_TT_C_like Puta 99.8 1.7E-18 3.8E-23 125.7 16.7 103 73-180 56-162 (163)
5 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 4.5E-19 9.8E-24 135.2 12.2 148 13-181 45-194 (231)
6 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 2.9E-18 6.3E-23 134.2 14.3 136 41-180 112-275 (338)
7 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.8 6.1E-18 1.3E-22 131.1 14.5 85 89-181 78-172 (254)
8 PRK05289 UDP-N-acetylglucosami 99.8 1E-17 2.3E-22 130.3 14.7 36 142-181 140-175 (262)
9 TIGR01852 lipid_A_lpxA acyl-[a 99.8 3.7E-17 8E-22 126.8 16.4 35 143-181 137-171 (254)
10 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.8 2.7E-17 5.9E-22 127.5 15.7 79 45-123 4-95 (254)
11 cd03350 LbH_THP_succinylT 2,3, 99.8 6.8E-17 1.5E-21 114.4 15.4 110 45-181 6-124 (139)
12 COG0663 PaaY Carbonic anhydras 99.8 1.5E-17 3.2E-22 119.6 11.4 100 44-180 15-122 (176)
13 cd03353 LbH_GlmU_C N-acetyl-gl 99.8 9.2E-17 2E-21 119.7 15.7 130 48-182 11-179 (193)
14 cd04646 LbH_Dynactin_6 Dynacti 99.7 1E-16 2.2E-21 116.4 14.6 112 45-180 10-134 (164)
15 TIGR01852 lipid_A_lpxA acyl-[a 99.7 6.3E-17 1.4E-21 125.5 14.2 131 46-180 4-152 (254)
16 PRK14353 glmU bifunctional N-a 99.7 7.6E-17 1.6E-21 134.2 14.9 35 143-181 380-414 (446)
17 TIGR01853 lipid_A_lpxD UDP-3-O 99.7 1.4E-16 3E-21 127.3 15.5 164 14-181 71-287 (324)
18 PRK13627 carnitine operon prot 99.7 9E-17 2E-21 119.6 13.3 95 62-181 20-122 (196)
19 PLN02296 carbonate dehydratase 99.7 1.3E-16 2.8E-21 123.9 14.2 87 69-180 69-169 (269)
20 cd04745 LbH_paaY_like paaY-lik 99.7 1.2E-16 2.6E-21 115.1 13.1 102 49-174 15-123 (155)
21 PRK14355 glmU bifunctional N-a 99.7 1.6E-16 3.4E-21 132.8 15.6 160 17-181 226-431 (459)
22 cd03352 LbH_LpxD UDP-3-O-acyl- 99.7 5.2E-16 1.1E-20 116.6 16.9 36 142-181 149-184 (205)
23 PRK00892 lpxD UDP-3-O-[3-hydro 99.7 2.3E-16 5.1E-21 127.2 15.7 135 42-180 114-294 (343)
24 COG0663 PaaY Carbonic anhydras 99.7 8.4E-17 1.8E-21 115.7 11.6 102 40-161 17-125 (176)
25 PLN02296 carbonate dehydratase 99.7 2.5E-16 5.5E-21 122.2 15.0 109 42-174 54-181 (269)
26 cd04646 LbH_Dynactin_6 Dynacti 99.7 1.6E-16 3.5E-21 115.4 13.1 101 56-181 3-117 (164)
27 PRK12461 UDP-N-acetylglucosami 99.7 1.7E-16 3.8E-21 122.7 13.7 77 46-122 5-94 (255)
28 cd03352 LbH_LpxD UDP-3-O-acyl- 99.7 7.8E-16 1.7E-20 115.6 16.5 131 46-180 7-165 (205)
29 COG1207 GlmU N-acetylglucosami 99.7 7.8E-17 1.7E-21 129.1 11.4 130 50-180 266-412 (460)
30 TIGR02287 PaaY phenylacetic ac 99.7 2.1E-16 4.5E-21 117.4 12.7 99 43-161 11-122 (192)
31 KOG1461 Translation initiation 99.7 5E-17 1.1E-21 135.1 10.1 138 10-180 279-417 (673)
32 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 9.6E-17 2.1E-21 123.3 10.9 98 44-161 98-209 (269)
33 PRK12461 UDP-N-acetylglucosami 99.7 4.2E-16 9E-21 120.6 14.0 132 42-181 13-171 (255)
34 cd04650 LbH_FBP Ferripyochelin 99.7 1.1E-15 2.5E-20 109.9 14.6 110 45-178 11-128 (154)
35 PRK14359 glmU bifunctional N-a 99.7 2.7E-16 5.8E-21 130.3 12.9 161 15-181 215-401 (430)
36 cd00710 LbH_gamma_CA Gamma car 99.7 1.3E-15 2.8E-20 111.0 14.4 113 43-181 5-132 (167)
37 TIGR02287 PaaY phenylacetic ac 99.7 1E-15 2.2E-20 113.6 13.8 104 53-181 9-120 (192)
38 PLN02472 uncharacterized prote 99.7 1.1E-15 2.4E-20 117.3 14.2 99 57-180 64-176 (246)
39 cd04745 LbH_paaY_like paaY-lik 99.7 1.5E-15 3.3E-20 109.3 14.2 101 56-181 4-112 (155)
40 cd03350 LbH_THP_succinylT 2,3, 99.7 1.5E-15 3.2E-20 107.5 13.6 76 90-181 33-109 (139)
41 PLN02472 uncharacterized prote 99.7 1.1E-15 2.3E-20 117.4 13.6 111 40-174 59-188 (246)
42 TIGR01173 glmU UDP-N-acetylglu 99.7 5.9E-16 1.3E-20 128.9 13.1 130 48-182 257-425 (451)
43 PRK13627 carnitine operon prot 99.7 1.3E-15 2.9E-20 113.3 13.5 101 42-162 12-125 (196)
44 cd04650 LbH_FBP Ferripyochelin 99.7 1.5E-15 3.3E-20 109.2 12.9 102 55-181 3-112 (154)
45 PRK05293 glgC glucose-1-phosph 99.7 3.5E-16 7.5E-21 127.8 10.7 143 14-181 238-380 (380)
46 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 2.6E-15 5.6E-20 116.3 14.5 104 44-171 101-218 (272)
47 cd00710 LbH_gamma_CA Gamma car 99.7 3.3E-15 7.1E-20 108.9 14.0 103 54-181 4-115 (167)
48 cd04645 LbH_gamma_CA_like Gamm 99.7 3.5E-15 7.6E-20 107.2 13.8 100 51-174 16-122 (153)
49 TIGR03308 phn_thr-fam phosphon 99.7 3.8E-15 8.2E-20 111.7 14.5 121 55-181 5-142 (204)
50 COG1043 LpxA Acyl-[acyl carrie 99.7 1E-15 2.2E-20 114.2 10.5 116 48-180 11-139 (260)
51 PRK05289 UDP-N-acetylglucosami 99.7 3.6E-15 7.7E-20 116.1 14.1 80 43-122 5-97 (262)
52 PRK09451 glmU bifunctional N-a 99.7 4.6E-15 1E-19 123.9 15.5 35 143-181 394-428 (456)
53 PRK14358 glmU bifunctional N-a 99.7 1.8E-15 3.9E-20 127.1 13.0 131 49-180 267-414 (481)
54 cd04645 LbH_gamma_CA_like Gamm 99.7 4.1E-15 8.9E-20 106.9 12.8 101 56-181 3-111 (153)
55 TIGR00965 dapD 2,3,4,5-tetrahy 99.6 3.9E-15 8.5E-20 114.5 13.3 102 64-181 100-207 (269)
56 COG1043 LpxA Acyl-[acyl carrie 99.6 1.3E-15 2.8E-20 113.7 10.1 115 60-182 5-123 (260)
57 PRK14352 glmU bifunctional N-a 99.6 2.9E-15 6.2E-20 126.0 13.4 68 47-116 266-333 (482)
58 TIGR03570 NeuD_NnaD sugar O-ac 99.6 6E-15 1.3E-19 109.9 13.6 94 64-181 93-187 (201)
59 cd03358 LbH_WxcM_N_like WcxM-l 99.6 6.3E-15 1.4E-19 101.3 11.4 20 103-122 65-84 (119)
60 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 1.1E-14 2.4E-19 111.1 13.7 99 44-162 90-197 (231)
61 PRK14353 glmU bifunctional N-a 99.6 1.1E-14 2.5E-19 121.2 15.0 127 48-180 264-395 (446)
62 cd03360 LbH_AT_putative Putati 99.6 1.3E-14 2.8E-19 107.3 13.8 76 81-180 107-183 (197)
63 PRK14356 glmU bifunctional N-a 99.6 2.6E-15 5.6E-20 125.4 10.8 76 46-122 263-338 (456)
64 COG0448 GlgC ADP-glucose pyrop 99.6 1.6E-15 3.4E-20 121.3 8.3 141 12-177 239-390 (393)
65 PRK14360 glmU bifunctional N-a 99.6 2.2E-14 4.7E-19 119.6 15.1 35 143-181 390-424 (450)
66 cd05636 LbH_G1P_TT_C_like Puta 99.6 3.7E-14 8E-19 102.9 14.2 80 42-121 7-86 (163)
67 TIGR03570 NeuD_NnaD sugar O-ac 99.6 4.8E-14 1E-18 105.0 15.1 95 48-162 89-190 (201)
68 cd04649 LbH_THP_succinylT_puta 99.6 4.4E-14 9.6E-19 99.1 13.5 99 48-181 3-105 (147)
69 cd03359 LbH_Dynactin_5 Dynacti 99.6 3.8E-14 8.2E-19 102.7 13.6 100 53-176 22-136 (161)
70 cd03360 LbH_AT_putative Putati 99.6 4.9E-14 1.1E-18 104.2 14.5 95 47-161 85-186 (197)
71 PRK14357 glmU bifunctional N-a 99.6 2.6E-14 5.7E-19 119.1 13.9 35 143-181 383-417 (448)
72 PRK11830 dapD 2,3,4,5-tetrahyd 99.6 2.6E-14 5.7E-19 110.7 12.4 104 62-181 101-210 (272)
73 cd04649 LbH_THP_succinylT_puta 99.6 6.2E-14 1.3E-18 98.4 12.7 93 45-161 6-107 (147)
74 cd03358 LbH_WxcM_N_like WcxM-l 99.6 7.6E-14 1.7E-18 95.9 13.1 98 58-181 4-101 (119)
75 PRK14358 glmU bifunctional N-a 99.6 5.9E-14 1.3E-18 118.0 14.7 133 44-181 274-433 (481)
76 COG1207 GlmU N-acetylglucosami 99.6 2.1E-14 4.5E-19 115.3 10.9 106 73-182 323-432 (460)
77 TIGR01208 rmlA_long glucose-1- 99.6 2.9E-14 6.3E-19 115.4 11.7 132 14-175 215-352 (353)
78 COG1208 GCD1 Nucleoside-diphos 99.6 2.2E-14 4.8E-19 116.2 10.7 134 14-179 215-356 (358)
79 PRK14354 glmU bifunctional N-a 99.6 1.4E-13 3E-18 115.0 15.1 35 143-181 393-427 (458)
80 PRK10502 putative acyl transfe 99.6 6.8E-14 1.5E-18 103.3 11.3 35 143-181 124-158 (182)
81 PRK09677 putative lipopolysacc 99.5 2.8E-13 6.1E-18 100.8 14.1 107 72-182 45-165 (192)
82 PRK14352 glmU bifunctional N-a 99.5 3.3E-13 7.1E-18 113.6 15.7 36 142-181 398-433 (482)
83 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 1.7E-13 3.7E-18 102.0 12.5 68 52-121 9-77 (193)
84 PRK10502 putative acyl transfe 99.5 5.6E-13 1.2E-17 98.4 14.5 92 54-165 53-164 (182)
85 PLN02241 glucose-1-phosphate a 99.5 4.3E-14 9.3E-19 117.5 9.5 92 13-108 260-351 (436)
86 PRK14356 glmU bifunctional N-a 99.5 2.6E-13 5.7E-18 113.3 14.3 130 47-181 276-432 (456)
87 PRK14360 glmU bifunctional N-a 99.5 2.7E-13 5.8E-18 113.1 14.1 126 50-180 260-405 (450)
88 PLN02694 serine O-acetyltransf 99.5 3.5E-13 7.7E-18 104.7 13.6 98 53-173 161-261 (294)
89 cd05824 LbH_M1P_guanylylT_C Ma 99.5 2.4E-13 5.2E-18 87.1 10.5 76 75-175 4-79 (80)
90 COG2171 DapD Tetrahydrodipicol 99.5 1E-13 2.2E-18 105.3 9.9 107 59-181 109-216 (271)
91 PRK00844 glgC glucose-1-phosph 99.5 7E-14 1.5E-18 115.3 9.5 124 14-160 256-382 (407)
92 COG1045 CysE Serine acetyltran 99.5 2.6E-13 5.5E-18 98.9 11.2 105 44-175 65-170 (194)
93 cd03356 LbH_G1P_AT_C_like Left 99.5 2.7E-13 5.9E-18 86.6 10.2 77 73-175 2-78 (79)
94 cd03359 LbH_Dynactin_5 Dynacti 99.5 6.6E-13 1.4E-17 96.2 13.1 51 71-121 22-88 (161)
95 PRK14355 glmU bifunctional N-a 99.5 3.2E-13 7E-18 112.9 12.7 62 60-121 257-319 (459)
96 cd05787 LbH_eIF2B_epsilon eIF- 99.5 3.7E-13 7.9E-18 85.8 9.9 77 73-175 2-78 (79)
97 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 4.7E-13 1E-17 86.0 10.2 47 74-121 3-49 (81)
98 PRK11132 cysE serine acetyltra 99.5 3.4E-13 7.4E-18 104.6 11.2 50 105-174 193-243 (273)
99 PRK02862 glgC glucose-1-phosph 99.5 1.2E-13 2.6E-18 114.6 8.9 142 14-180 253-423 (429)
100 PRK14354 glmU bifunctional N-a 99.5 6.2E-13 1.3E-17 111.1 13.2 73 48-122 261-333 (458)
101 PRK09527 lacA galactoside O-ac 99.5 8.3E-13 1.8E-17 98.7 12.1 35 143-181 131-165 (203)
102 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 8.6E-13 1.9E-17 84.7 10.5 79 55-156 2-80 (81)
103 TIGR01172 cysE serine O-acetyl 99.5 6.7E-13 1.4E-17 96.2 11.1 41 104-164 112-152 (162)
104 TIGR03536 DapD_gpp 2,3,4,5-tet 99.5 9E-13 2E-17 102.8 12.3 31 144-180 251-281 (341)
105 cd05824 LbH_M1P_guanylylT_C Ma 99.5 1.1E-12 2.3E-17 84.1 10.3 78 55-153 2-79 (80)
106 TIGR02092 glgD glucose-1-phosp 99.5 3.6E-13 7.7E-18 109.7 10.0 133 13-170 232-365 (369)
107 cd03356 LbH_G1P_AT_C_like Left 99.5 1.2E-12 2.6E-17 83.6 10.2 77 55-153 2-78 (79)
108 TIGR01173 glmU UDP-N-acetylglu 99.5 4.7E-13 1E-17 111.5 10.7 57 65-121 256-312 (451)
109 PRK09527 lacA galactoside O-ac 99.5 3.7E-12 8.1E-17 95.2 14.4 101 49-173 58-180 (203)
110 PRK09677 putative lipopolysacc 99.5 4.2E-12 9.1E-17 94.5 14.6 90 53-162 44-167 (192)
111 TIGR03536 DapD_gpp 2,3,4,5-tet 99.5 1.6E-12 3.6E-17 101.3 12.7 98 42-161 174-284 (341)
112 cd03357 LbH_MAT_GAT Maltose O- 99.5 2.4E-12 5.3E-17 93.9 13.0 34 143-180 118-151 (169)
113 PRK10191 putative acyl transfe 99.5 1.9E-12 4.1E-17 92.0 12.0 98 49-174 44-142 (146)
114 TIGR03535 DapD_actino 2,3,4,5- 99.5 1.9E-12 4.1E-17 100.5 12.8 104 57-181 152-257 (319)
115 PRK14357 glmU bifunctional N-a 99.5 9E-13 1.9E-17 109.9 11.9 68 54-122 251-323 (448)
116 cd05635 LbH_unknown Uncharacte 99.4 2.8E-12 6.2E-17 85.7 11.8 84 52-158 11-94 (101)
117 PRK10092 maltose O-acetyltrans 99.4 2.1E-12 4.6E-17 95.3 11.6 36 143-182 129-164 (183)
118 cd05787 LbH_eIF2B_epsilon eIF- 99.4 2.1E-12 4.6E-17 82.2 9.9 78 55-154 2-79 (79)
119 KOG1461 Translation initiation 99.4 5.7E-13 1.2E-17 111.2 8.4 92 48-161 329-420 (673)
120 TIGR03308 phn_thr-fam phosphon 99.4 7.6E-12 1.6E-16 93.9 13.7 88 53-162 20-145 (204)
121 PLN02357 serine acetyltransfer 99.4 4.7E-12 1E-16 101.0 13.1 97 55-174 229-328 (360)
122 COG2171 DapD Tetrahydrodipicol 99.4 1.6E-12 3.4E-17 99.0 9.9 100 46-165 108-222 (271)
123 PLN02739 serine acetyltransfer 99.4 2.4E-12 5.3E-17 102.0 10.9 50 105-174 257-307 (355)
124 PRK00725 glgC glucose-1-phosph 99.4 1.3E-12 2.9E-17 108.2 10.0 125 15-162 268-396 (425)
125 KOG1460 GDP-mannose pyrophosph 99.4 7.9E-13 1.7E-17 101.9 7.6 142 11-160 241-388 (407)
126 cd04651 LbH_G1P_AT_C Glucose-1 99.4 5.4E-12 1.2E-16 84.9 10.6 80 59-162 2-81 (104)
127 cd03357 LbH_MAT_GAT Maltose O- 99.4 5.9E-12 1.3E-16 91.9 11.1 100 49-172 45-166 (169)
128 cd03354 LbH_SAT Serine acetylt 99.4 1.2E-11 2.6E-16 82.7 11.2 62 81-162 27-91 (101)
129 TIGR03535 DapD_actino 2,3,4,5- 99.4 1.1E-11 2.3E-16 96.3 12.2 89 48-161 161-259 (319)
130 TIGR02091 glgC glucose-1-phosp 99.4 2.9E-12 6.3E-17 104.0 9.2 105 14-121 238-343 (361)
131 KOG1322 GDP-mannose pyrophosph 99.4 4.1E-13 8.8E-18 104.6 3.9 130 11-161 221-352 (371)
132 PRK14359 glmU bifunctional N-a 99.4 1.4E-11 3E-16 102.3 12.8 121 58-180 253-382 (430)
133 cd05825 LbH_wcaF_like wcaF-lik 99.3 3.3E-11 7.2E-16 81.4 11.9 34 143-180 56-89 (107)
134 cd05825 LbH_wcaF_like wcaF-lik 99.3 1.6E-11 3.6E-16 82.9 10.1 49 104-172 55-104 (107)
135 PRK09451 glmU bifunctional N-a 99.3 8.4E-12 1.8E-16 104.4 10.5 142 17-181 229-385 (456)
136 COG1208 GCD1 Nucleoside-diphos 99.3 2.8E-11 6E-16 98.2 11.4 94 61-181 253-346 (358)
137 PLN02694 serine O-acetyltransf 99.3 1.3E-11 2.8E-16 96.1 9.0 35 143-181 212-246 (294)
138 cd00208 LbetaH Left-handed par 99.3 3.4E-11 7.4E-16 76.1 9.2 34 143-180 44-77 (78)
139 cd00208 LbetaH Left-handed par 99.3 4E-11 8.7E-16 75.8 9.4 67 72-158 2-77 (78)
140 PLN02241 glucose-1-phosphate a 99.3 3.1E-11 6.7E-16 100.5 11.1 103 53-180 316-436 (436)
141 cd04651 LbH_G1P_AT_C Glucose-1 99.3 4.3E-11 9.3E-16 80.5 9.6 66 54-122 14-79 (104)
142 cd04647 LbH_MAT_like Maltose O 99.3 9.2E-11 2E-15 79.1 11.1 87 54-160 3-93 (109)
143 cd05635 LbH_unknown Uncharacte 99.3 7.2E-11 1.6E-15 78.9 10.4 81 42-122 13-96 (101)
144 PRK10191 putative acyl transfe 99.3 7.9E-11 1.7E-15 83.7 10.9 35 143-181 92-126 (146)
145 PRK10092 maltose O-acetyltrans 99.3 2.8E-10 6E-15 84.0 13.6 87 52-162 59-166 (183)
146 cd04647 LbH_MAT_like Maltose O 99.3 8.5E-11 1.8E-15 79.3 10.0 89 71-181 2-92 (109)
147 COG0110 WbbJ Acetyltransferase 99.3 8.8E-11 1.9E-15 87.1 10.8 73 105-182 87-159 (190)
148 TIGR01172 cysE serine O-acetyl 99.2 3E-10 6.4E-15 82.4 12.9 81 42-122 57-148 (162)
149 PRK05293 glgC glucose-1-phosph 99.2 1.1E-10 2.4E-15 95.5 11.7 96 45-158 281-379 (380)
150 PRK11132 cysE serine acetyltra 99.2 4.9E-11 1.1E-15 92.6 8.8 35 143-181 193-227 (273)
151 cd03354 LbH_SAT Serine acetylt 99.2 1.6E-10 3.6E-15 77.1 10.1 34 143-180 54-87 (101)
152 PLN02357 serine acetyltransfer 99.2 8.7E-11 1.9E-15 93.9 9.9 74 48-121 228-312 (360)
153 COG0448 GlgC ADP-glucose pyrop 99.2 2.4E-10 5.1E-15 91.8 11.1 74 49-123 282-363 (393)
154 TIGR01208 rmlA_long glucose-1- 99.2 3.7E-10 8E-15 91.5 11.6 87 71-179 249-336 (353)
155 COG1045 CysE Serine acetyltran 99.2 2.9E-11 6.2E-16 88.2 4.6 90 61-181 64-153 (194)
156 PLN02739 serine acetyltransfer 99.2 1.6E-10 3.5E-15 91.8 8.9 35 143-181 257-291 (355)
157 KOG3121 Dynactin, subunit p25 99.2 9.2E-11 2E-15 81.1 6.5 102 52-177 33-149 (184)
158 KOG1462 Translation initiation 99.2 1.2E-10 2.6E-15 92.7 8.0 82 69-177 333-414 (433)
159 cd03349 LbH_XAT Xenobiotic acy 99.1 1.1E-09 2.3E-14 78.0 10.0 37 141-181 71-107 (145)
160 PRK02862 glgC glucose-1-phosph 99.1 5.9E-10 1.3E-14 92.6 9.5 69 52-122 308-394 (429)
161 KOG1462 Translation initiation 99.1 6.1E-10 1.3E-14 88.7 8.4 88 49-159 331-418 (433)
162 KOG4750 Serine O-acetyltransfe 99.1 4.6E-10 9.9E-15 83.3 6.5 59 84-162 170-237 (269)
163 PRK00844 glgC glucose-1-phosph 99.0 1.6E-09 3.6E-14 89.4 10.4 71 50-123 313-383 (407)
164 cd03349 LbH_XAT Xenobiotic acy 99.0 1.7E-08 3.6E-13 71.9 11.3 42 103-164 71-112 (145)
165 TIGR02091 glgC glucose-1-phosp 99.0 6.7E-09 1.5E-13 84.4 10.4 82 73-182 280-361 (361)
166 COG0110 WbbJ Acetyltransferase 98.9 1.7E-08 3.7E-13 74.7 10.9 49 105-173 124-173 (190)
167 KOG1460 GDP-mannose pyrophosph 98.9 9.4E-09 2E-13 79.7 9.3 97 65-182 283-388 (407)
168 TIGR02092 glgD glucose-1-phosp 98.9 1.7E-08 3.7E-13 82.3 10.0 77 75-180 277-353 (369)
169 PRK00725 glgC glucose-1-phosph 98.9 2.3E-08 5E-13 83.1 10.6 69 51-122 326-394 (425)
170 KOG4750 Serine O-acetyltransfe 98.8 1.3E-08 2.8E-13 75.7 7.6 35 143-182 201-235 (269)
171 KOG1322 GDP-mannose pyrophosph 98.8 5.5E-09 1.2E-13 81.9 5.6 95 61-180 255-349 (371)
172 TIGR02353 NRPS_term_dom non-ri 98.8 5.2E-08 1.1E-12 85.4 10.4 37 105-161 160-196 (695)
173 KOG3121 Dynactin, subunit p25 98.8 1.3E-08 2.8E-13 70.6 5.0 53 70-122 33-101 (184)
174 TIGR02353 NRPS_term_dom non-ri 98.7 9.9E-08 2.1E-12 83.6 10.2 38 104-161 644-681 (695)
175 KOG4042 Dynactin subunit p27/W 98.6 7.8E-08 1.7E-12 67.2 4.8 48 56-103 12-62 (190)
176 KOG4042 Dynactin subunit p27/W 98.5 2.1E-07 4.5E-12 65.1 3.9 74 49-122 17-112 (190)
177 PF14602 Hexapep_2: Hexapeptid 98.3 6.6E-07 1.4E-11 47.5 3.4 33 143-181 1-33 (34)
178 PF00132 Hexapep: Bacterial tr 98.2 1.1E-06 2.4E-11 47.1 3.0 34 144-181 2-35 (36)
179 COG4801 Predicted acyltransfer 98.2 8.9E-06 1.9E-10 61.1 7.9 70 71-161 17-86 (277)
180 PF00132 Hexapep: Bacterial tr 98.1 2.5E-06 5.4E-11 45.7 2.3 32 72-103 3-34 (36)
181 PF14602 Hexapep_2: Hexapeptid 98.0 1.4E-05 3E-10 42.3 4.0 30 72-103 3-32 (34)
182 COG4801 Predicted acyltransfer 97.5 0.00035 7.5E-09 52.7 6.8 83 57-161 21-104 (277)
183 PF07959 Fucokinase: L-fucokin 92.0 0.51 1.1E-05 39.4 6.2 44 78-122 275-318 (414)
184 PF07959 Fucokinase: L-fucokin 91.5 0.44 9.4E-06 39.8 5.3 42 70-112 284-325 (414)
185 PF04519 Bactofilin: Polymer-f 87.6 1.1 2.4E-05 29.4 4.0 21 94-114 36-56 (101)
186 COG1664 CcmA Integral membrane 78.4 14 0.00029 26.3 6.6 21 47-67 24-44 (146)
187 PRK13412 fkp bifunctional fuco 74.9 5.8 0.00013 36.8 4.9 52 70-121 336-388 (974)
188 PF04519 Bactofilin: Polymer-f 64.1 23 0.00049 23.0 4.9 13 76-88 36-48 (101)
189 COG1209 RfbA dTDP-glucose pyro 62.9 0.97 2.1E-05 35.4 -2.2 22 14-35 216-237 (286)
190 PRK13412 fkp bifunctional fuco 58.3 25 0.00055 32.8 5.6 57 52-108 336-392 (974)
191 KOG2638 UDP-glucose pyrophosph 35.9 43 0.00094 28.2 3.1 16 73-88 450-465 (498)
192 KOG2638 UDP-glucose pyrophosph 30.7 62 0.0013 27.3 3.2 42 142-183 452-493 (498)
No 1
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.91 E-value=1.9e-23 Score=163.10 Aligned_cols=140 Identities=44% Similarity=0.691 Sum_probs=119.7
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCI 120 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i 120 (183)
.+.+...+.+.+.+++++.++++++|++++.||+++.|+++++|++++.||+++.|+.++.|.. +.||++|.|++++.|
T Consensus 101 ~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 101 GIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred ccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 3445556677777777777778888888888888888888888888888888888888888854 999999999999999
Q ss_pred CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+.+.|+|.....+ ..+..+.+.++|+++|.||++++|+++..++|+|++++.|++.++|+|
T Consensus 181 G~dgFg~a~~~~g-~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaH 241 (338)
T COG1044 181 GADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGH 241 (338)
T ss_pred ccCccccccccCC-ceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEcc
Confidence 9999999876666 567778889999999999999999999999999999999999988876
No 2
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.89 E-value=1e-21 Score=156.69 Aligned_cols=140 Identities=40% Similarity=0.643 Sum_probs=112.6
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCI 120 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i 120 (183)
.+.....+++.+.|++++.|++++.|++++.||++|.|++++.|+++++||++|.|++++.|. +++|+++|.|++++.|
T Consensus 93 ~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 93 GIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred CcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 345556677777777777777777777778888888888888888888889999999999996 8999999999999999
Q ss_pred CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+.++|+|.....+...+..+.+.++||+++.||+++++..+...+++||+++.|++.++|+
T Consensus 173 g~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~ 233 (324)
T TIGR01853 173 GSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIA 233 (324)
T ss_pred CCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEEC
Confidence 9998888765444455566677899999999999999987766667777777777776664
No 3
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.86 E-value=2e-20 Score=150.74 Aligned_cols=140 Identities=44% Similarity=0.688 Sum_probs=108.7
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCI 120 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i 120 (183)
.+.....+.+.+.+++++.|++++.|++++.||+++.|+++++|++++.||++|.|++++.|.+ +.|+++|.|++++.|
T Consensus 102 ~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 102 GIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred cCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 3445556666666666677777777777777777788888888888888888888888888854 669999999999999
Q ss_pred CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+.++|+|. ...+...+..+.+.++||++++||+++++.++...+++||+++.|+++++|++
T Consensus 182 g~~~f~~~-~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~ 242 (343)
T PRK00892 182 GSDGFGFA-NDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAH 242 (343)
T ss_pred eccCcCcc-cCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEcc
Confidence 99988887 34444555667779999999999999999877666677777777777776643
No 4
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.82 E-value=1.7e-18 Score=125.68 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=61.3
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceee--c-cCC-ccccCCceeceEECC
Q 030076 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV--D-EHG-NMLKKPQLLNARIGN 148 (183)
Q Consensus 73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~--~-~~~-~~~~~~~~~~~~Ig~ 148 (183)
|+++|.|++++.|. +++|++++.|++++.+.+++|++++.|++++.+.+..+.... . .++ .........+++|++
T Consensus 56 Ig~~~~I~~~~~i~-~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~ 134 (163)
T cd05636 56 LGDGCVVGNSVEVK-NSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGD 134 (163)
T ss_pred ECCCCEECCCcEEe-eeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcC
Confidence 33333333333332 234555555555555556666666666666666542221100 0 000 000111234799999
Q ss_pred CCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
+++||.++.+.++ ++||+++.|+++++|
T Consensus 135 ~~~ig~~~~i~~g----~~ig~~~~i~agsvV 162 (163)
T cd05636 135 GVKTGINVSLNPG----VKIGPGSWVYPGCVV 162 (163)
T ss_pred CeEECCCcEECCC----cEECCCCEECCCcEe
Confidence 9999999999998 999999999999987
No 5
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.81 E-value=4.5e-19 Score=135.19 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=110.8
Q ss_pred hhhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccc-eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE
Q 030076 13 TKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQS-ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI 91 (183)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I 91 (183)
+.+||.|+ +.|+..+..++....... .......+. .+++.++.|++++.|.+++.||+++.|++++.|..+++|
T Consensus 45 ~~gyW~Di---~~yl~an~diL~~~~~~~--~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~I 119 (231)
T TIGR03532 45 LFGEWEDI---EPFIEANKDKIKDYRIEN--DRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEI 119 (231)
T ss_pred EEEeHHHH---HHHHHHhHhhhcceEEee--cccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEE
Confidence 45799999 888888888775432100 000111111 245667777778888888888888888888888888899
Q ss_pred CCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECC
Q 030076 92 GQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170 (183)
Q Consensus 92 g~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~ 170 (183)
|++|.|++++.|. +++|+++|.|++++.+.+.. ......+++|+++++||+++++.++ ++||+
T Consensus 120 G~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~------------~~~~~~~v~IGd~v~IG~gsvI~~g----~~Ig~ 183 (231)
T TIGR03532 120 GEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI------------EPPSAKPVVIEDNVLIGANAVILEG----VRVGK 183 (231)
T ss_pred CCCCEEccccccCCCcEECCCcEEcCCcEEcccc------------ccccCCCeEECCCcEECCCCEEcCC----CEECC
Confidence 9999999999985 78999999999999997410 0011236899999999999999988 99999
Q ss_pred CCEECCCCeEe
Q 030076 171 HSKIDNLVQVG 181 (183)
Q Consensus 171 ~~~I~~~~~v~ 181 (183)
++.|+++++|.
T Consensus 184 ~~~IgagsvV~ 194 (231)
T TIGR03532 184 GAVVAAGAIVT 194 (231)
T ss_pred CCEECCCCEEc
Confidence 99999999874
No 6
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.79 E-value=2.9e-18 Score=134.19 Aligned_cols=136 Identities=26% Similarity=0.335 Sum_probs=85.8
Q ss_pred cccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC------CEECCCcEECCCcEEe----------
Q 030076 41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA------VTIGQSTNIGFNVALS---------- 104 (183)
Q Consensus 41 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~------~~Ig~~~~Ig~~~~i~---------- 104 (183)
..++.++.++++++|++++.|+++++|.++++|+++|.||++++|.++ +.||++|.|+++++|.
T Consensus 112 A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~ 191 (338)
T COG1044 112 ATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTA 191 (338)
T ss_pred CccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCcccccccc
Confidence 455566666666666666666666666666666666666665555554 5556666666666662
Q ss_pred ----------ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC--CCCeEECCCC
Q 030076 105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS--WRDTVIGDHS 172 (183)
Q Consensus 105 ----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~--~~~~~Ig~~~ 172 (183)
+++|+++|.||.+++|...-+..+...++++... .+-|+.+|.||+++.|..++ ...+.||+++
T Consensus 192 ~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN----~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v 267 (338)
T COG1044 192 IGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN----LVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYV 267 (338)
T ss_pred CCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcc----eeEEccccEECCCcEEeccceeeccceECCeE
Confidence 5889999999999999987666666666666653 34555555555555554443 2336666666
Q ss_pred EECCCCeE
Q 030076 173 KIDNLVQV 180 (183)
Q Consensus 173 ~I~~~~~v 180 (183)
.|+..+-|
T Consensus 268 ~igg~vgI 275 (338)
T COG1044 268 IIGGQVGI 275 (338)
T ss_pred EECcceee
Confidence 66555544
No 7
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.78 E-value=6.1e-18 Score=131.13 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=49.2
Q ss_pred CEECCCcEECCCcEEe--------ceEECCCCEECCCcEECCCCCceeeccCCcccc-CCce-eceEECCCCEECCCcEE
Q 030076 89 VTIGQSTNIGFNVALS--------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-KPQL-LNARIGNHVEIGANSCI 158 (183)
Q Consensus 89 ~~Ig~~~~Ig~~~~i~--------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v 158 (183)
++||++|.|+++|.|. .++|+++|.|++++.|.++ ....+..... .... .++.||++++|++++.+
T Consensus 78 v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~----~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i 153 (254)
T cd03351 78 LEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHD----CVIGNNVILANNATLAGHVEIGDYAIIGGLSAV 153 (254)
T ss_pred EEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCC----CEECCCcEECCCccccCCcEeCCCcEECCcceE
Confidence 3445555555555553 2445555555555555321 1111222221 2223 46788888888888888
Q ss_pred cCCCCCCeEECCCCEECCCCeEe
Q 030076 159 DRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 159 ~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.++ +.||++++|++++.|.
T Consensus 154 ~~~----v~Ig~~~~Ig~~s~V~ 172 (254)
T cd03351 154 HQF----CRIGRHAMVGGGSGVV 172 (254)
T ss_pred CCC----cEECCCCEECcCCEEe
Confidence 877 8889999998888874
No 8
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.78 E-value=1e-17 Score=130.26 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.3
Q ss_pred eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+.+.||++++||.++.+.++ ++||++++|+++++|.
T Consensus 140 g~v~Igd~~~Ig~~~~i~~~----v~Ig~~~~Ig~gs~V~ 175 (262)
T PRK05289 140 GHVEVGDYAIIGGLTAVHQF----VRIGAHAMVGGMSGVS 175 (262)
T ss_pred cccccCCcEEEeecceecCC----CEECCCCEEeeeccee
Confidence 46888888899988888888 9999999999999885
No 9
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.77 E-value=3.7e-17 Score=126.77 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=26.5
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||++++|++++.+.++ ++||++++|++++.|.
T Consensus 137 ~~~Igd~~~Ig~~~~i~~~----v~Ig~~~~Ig~~s~V~ 171 (254)
T TIGR01852 137 HVEVGDYAIIGGLVAVHQF----VRIGRYAMIGGLSAVS 171 (254)
T ss_pred CcEECCCcEEeccCEECCC----cEECCCCEEeeeeeEe
Confidence 6777777777777777766 8888888888888774
No 10
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.77 E-value=2.7e-17 Score=127.48 Aligned_cols=79 Identities=25% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCC
Q 030076 45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDS 111 (183)
Q Consensus 45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~ 111 (183)
+...|++.+.|++++.|++++.|++++.||++|.|++++.|+++++||++|.|++++.|. +++|+++
T Consensus 4 ~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~ 83 (254)
T cd03351 4 PTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDN 83 (254)
T ss_pred CCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCC
Confidence 445678888888888888888888889999999999999998899999999999999995 6889999
Q ss_pred CEECCCcEECCC
Q 030076 112 CIIHNGVCIGQD 123 (183)
Q Consensus 112 ~~Ig~~~~i~~~ 123 (183)
|.|++++.|...
T Consensus 84 ~~Ig~~~~I~~~ 95 (254)
T cd03351 84 NTIREFVTIHRG 95 (254)
T ss_pred CEECCccEEecc
Confidence 999999999863
No 11
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.76 E-value=6.8e-17 Score=114.35 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=78.9
Q ss_pred CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEECCCCEEC
Q 030076 45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIGDSCIIH 115 (183)
Q Consensus 45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~~~~~Ig 115 (183)
++..+.++++|++++.|..++.+..++.|++++.|+.++.|+.+++|+++|.|++++.|. .++|+++++|+
T Consensus 6 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig 85 (139)
T cd03350 6 PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIG 85 (139)
T ss_pred CCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEEC
Confidence 344455555566666666566666666667777777777776677777777777777774 36788888888
Q ss_pred CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++.|.+ ++.|++++.|++++++.++ +.|+++ +++++|.
T Consensus 86 ~~a~I~~--------------------gv~Ig~~~~Ig~g~~V~~~----~~I~~~---~~~~~v~ 124 (139)
T cd03350 86 ANCEVVE--------------------GVIVGKGAVLAAGVVLTQS----TPIYDR---ETGEIYY 124 (139)
T ss_pred CCCEECC--------------------CCEECCCCEEcCCCEEcCC----eEeccc---CcccEEe
Confidence 8888876 7888888888888888877 778877 7777764
No 12
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.75 E-value=1.5e-17 Score=119.61 Aligned_cols=100 Identities=30% Similarity=0.403 Sum_probs=55.9
Q ss_pred CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEEe-----ceEECCCCEEC
Q 030076 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALS-----NCIIGDSCIIH 115 (183)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig 115 (183)
....++.|.+.+-+++.|++++.|++++ +|++ ...||+++.|+++|.|. .++||+++.||
T Consensus 15 ~~~a~Va~~A~viGdV~Ig~~vsIw~~a------------VlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIG 82 (176)
T COG0663 15 DPTAFVAPSATVIGDVRIGAGVSIWPGA------------VLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIG 82 (176)
T ss_pred CCceEECCCCEEEEeEEECCCCEECCce------------EEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEc
Confidence 3344444444444444455554444444 4432 33556666666666652 45566666666
Q ss_pred CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
+++.+. +|.|+++|.||.|+++..| ++||++|+|+++++|
T Consensus 83 H~aivH---------------------Gc~Ig~~~lIGmgA~vldg----a~IG~~~iVgAgalV 122 (176)
T COG0663 83 HGAVVH---------------------GCTIGDNVLIGMGATVLDG----AVIGDGSIVGAGALV 122 (176)
T ss_pred CccEEE---------------------EeEECCCcEEecCceEeCC----cEECCCcEEccCCcc
Confidence 666665 5666666666666666655 666666666666655
No 13
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.75 E-value=9.2e-17 Score=119.65 Aligned_cols=130 Identities=24% Similarity=0.335 Sum_probs=73.5
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC-Cc
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG-FG 126 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~-~~ 126 (183)
.+.++++|++++.|++++.|.+++.|+++|.|++++.|++. .|++++.|++++.|.+++|++++.|++++.|..+. ++
T Consensus 11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig 89 (193)
T cd03353 11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLG 89 (193)
T ss_pred EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEEC
Confidence 34445555555555555555555555555555555555443 55555555555555555555555544444443210 00
Q ss_pred -------eee-----ccCC-----------------ccc------c---CCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076 127 -------FFV-----DEHG-----------------NML------K---KPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168 (183)
Q Consensus 127 -------~~~-----~~~~-----------------~~~------~---~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I 168 (183)
+.. ..++ ... . .....+++||++++++.++++.++ ++|
T Consensus 90 ~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~----~~I 165 (193)
T cd03353 90 EGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP----VTI 165 (193)
T ss_pred CCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC----cEE
Confidence 000 0000 000 0 001236789999999999999888 999
Q ss_pred CCCCEECCCCeEee
Q 030076 169 GDHSKIDNLVQVGF 182 (183)
Q Consensus 169 g~~~~I~~~~~v~~ 182 (183)
|+++.|+++++|.+
T Consensus 166 g~~~~i~~gs~V~~ 179 (193)
T cd03353 166 GDGATIAAGSTITK 179 (193)
T ss_pred CCCcEECCCCEEcc
Confidence 99999999998853
No 14
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.74 E-value=1e-16 Score=116.45 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCcEEccceEECCCcEECCCcEEc---cCcEECCCcEECCCCEECCC----------CEECCCcEECCCcEEeceEECCC
Q 030076 45 GGGIFHQSACIDSTVLIEVGAIVH---SKAVLGANVCIGSGTVVGPA----------VTIGQSTNIGFNVALSNCIIGDS 111 (183)
Q Consensus 45 ~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~I~~~~~I~~~----------~~Ig~~~~Ig~~~~i~~~~I~~~ 111 (183)
....+.++.+|++++.|++++.|. +++.||++|.|++++.|... +.||+++.+..++.|.+++|+++
T Consensus 10 ~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~ 89 (164)
T cd04646 10 QESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN 89 (164)
T ss_pred CCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence 334444445555555555555553 34567777888888877543 45888888888888989999999
Q ss_pred CEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 112 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 112 ~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
|+|++++.|.+ ++.||++++||++++|.++ +.|+++++++.+..+
T Consensus 90 ~~Ig~~a~I~~--------------------gv~Ig~~~~IgagsvV~~~----~~i~~~~vi~g~~~~ 134 (164)
T cd04646 90 NVFESKSFVGK--------------------NVIITDGCIIGAGCKLPSS----EILPENTVIYGADCL 134 (164)
T ss_pred CEEeCCCEECC--------------------CCEECCCCEEeCCeEECCC----cEECCCeEEeCCceE
Confidence 99999999987 8999999999999999987 888888888777654
No 15
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.74 E-value=6.3e-17 Score=125.46 Aligned_cols=131 Identities=28% Similarity=0.320 Sum_probs=81.9
Q ss_pred CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCC
Q 030076 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC 112 (183)
Q Consensus 46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~ 112 (183)
...+.+.++|++++.|++++.|++++.|++++.|++++.|.++++||+++.|++++.|. +++||++|
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 44566666676677777777777777777777777777777777777777777777775 46788888
Q ss_pred EECCCcEECCCCC---ceeeccCCccc-cCCce-eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 113 IIHNGVCIGQDGF---GFFVDEHGNML-KKPQL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 113 ~Ig~~~~i~~~~~---~~~~~~~~~~~-~~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
.|++++.|..... ......+.... ..... .++.||++++|++++.+..+ ++||+++.|++++.|
T Consensus 84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~----~~Igd~~~Ig~~~~i 152 (254)
T TIGR01852 84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH----VEVGDYAIIGGLVAV 152 (254)
T ss_pred EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC----cEECCCcEEeccCEE
Confidence 8888777775321 01111111111 11222 25666666666666666655 777777666666655
No 16
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=7.6e-17 Score=134.22 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=31.7
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
++.||++++||+++++.++ +.||++++|++++.|.
T Consensus 380 ~~~Ig~~~~ig~~~~i~~~----~~Ig~~~~ig~~s~v~ 414 (446)
T PRK14353 380 RTEIGAGAFIGSNSALVAP----VTIGDGAYIASGSVIT 414 (446)
T ss_pred CcEECCCcEECCCCEEeCC----CEECCCCEECCCCEEC
Confidence 6889999999999999988 9999999999999874
No 17
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.73 E-value=1.4e-16 Score=127.28 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=91.0
Q ss_pred hhhhhHHHhhhhhhcccchhhhhhhh------hcccCCCcEEccceEECCCcEECCCcEEccCcEEC------CCcEECC
Q 030076 14 KTYKQDFGRFCNLFSTKSDIESRQQF------QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLG------ANVCIGS 81 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig------~~~~I~~ 81 (183)
..+..++.+...+|.+.......... ...+..+..|+++++|++++.|++++.|+++++|+ ++|.|++
T Consensus 71 ~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~ 150 (324)
T TIGR01853 71 KDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHP 150 (324)
T ss_pred CCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECC
Confidence 45556666666666333221111111 22344555555555555555555555555555544 4444445
Q ss_pred CCEECCCCEECCCcEECCCcEEe---------------------ceEECCCCEECCCcEECCCCCceeeccCCccccC-C
Q 030076 82 GTVVGPAVTIGQSTNIGFNVALS---------------------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-P 139 (183)
Q Consensus 82 ~~~I~~~~~Ig~~~~Ig~~~~i~---------------------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~ 139 (183)
++.|+++++||++|.|+++|.|. .++|++++.||+++.|....++.+...++++... .
T Consensus 151 ~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v 230 (324)
T TIGR01853 151 NVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLV 230 (324)
T ss_pred CcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCc
Confidence 55555566777777777777773 3788899999999888654444333333333221 1
Q ss_pred ce-------------------eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 140 QL-------------------LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 140 ~~-------------------~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+. +.+.||++++++.++.|.++ +.||++++|++++.|.
T Consensus 231 ~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~----v~Ig~~~~ig~~s~V~ 287 (324)
T TIGR01853 231 QIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGH----LEIGDNVTIGAKSGVT 287 (324)
T ss_pred EECCCCEECCCcEECCcceEcCccEECCCeEEccccccccC----CEECCCCEEccCCEeC
Confidence 11 23444445555555555544 7777777777777764
No 18
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.73 E-value=9e-17 Score=119.63 Aligned_cols=95 Identities=24% Similarity=0.394 Sum_probs=55.9
Q ss_pred CCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----ceEECCCCEECCCcEECCCCCceeeccCC
Q 030076 62 EVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIGQDGFGFFVDEHG 133 (183)
Q Consensus 62 ~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~ 133 (183)
++++.|.+++.||++|.|+++++|+++ ++|++++.|+++|.|. +++|++++.|++++.+.
T Consensus 20 ~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~------------ 87 (196)
T PRK13627 20 HPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILH------------ 87 (196)
T ss_pred CCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEe------------
Confidence 333333334444444444455544332 3455555555555552 35666777777766665
Q ss_pred ccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 134 NMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 134 ~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||++|+||.++++.+| ++||++++|+++++|.
T Consensus 88 ---------g~vIG~~v~IG~ga~V~~g----~~IG~~s~Vgags~V~ 122 (196)
T PRK13627 88 ---------GCVIGRDALVGMNSVIMDG----AVIGEESIVAAMSFVK 122 (196)
T ss_pred ---------eEEECCCCEECcCCccCCC----cEECCCCEEcCCCEEe
Confidence 6667777777777777766 7777777777777663
No 19
>PLN02296 carbonate dehydratase
Probab=99.73 E-value=1.3e-16 Score=123.89 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=43.0
Q ss_pred cCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----------ceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076 69 SKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (183)
Q Consensus 69 ~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~ 134 (183)
+++.||++|.|+++|+|++. ++||++|.|+++|.|. +++|+++|.|++++.+.
T Consensus 69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~------------- 135 (269)
T PLN02296 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLH------------- 135 (269)
T ss_pred cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceec-------------
Confidence 33444444444444444332 2455555555555442 34555555555555553
Q ss_pred cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 135 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
+++|+++|+||.++++.+| ++|+++++|+++++|
T Consensus 136 --------g~~Igd~v~IG~ga~I~~g----v~Ig~~a~IgagSvV 169 (269)
T PLN02296 136 --------GCTVEDEAFVGMGATLLDG----VVVEKHAMVAAGALV 169 (269)
T ss_pred --------CCEECCCcEECCCcEECCC----eEECCCCEECCCCEE
Confidence 4555555555555555554 555555555555544
No 20
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.73 E-value=1.2e-16 Score=115.09 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=69.2
Q ss_pred EccceEECCCcEECCCcEEcc---CcEECCCcEECCCCEEC----CCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 49 FHQSACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
+..++.|++++.|++++.|.+ ++.||++|.|+++|.|. .+++|++++.|++++.+.+++|+++|.|+.++.+.
T Consensus 15 i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~ 94 (155)
T cd04745 15 LIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVM 94 (155)
T ss_pred EEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEe
Confidence 333444444444444444443 35666777777777773 34677888888888888888888888888888887
Q ss_pred CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076 122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174 (183)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I 174 (183)
+ ++.|+++++|++++++.++ +.|++++++
T Consensus 95 ~--------------------g~~Ig~~~~Ig~~s~v~~~----~~i~~~~~v 123 (155)
T cd04745 95 D--------------------GAVIGEESIVGAMAFVKAG----TVIPPRSLI 123 (155)
T ss_pred C--------------------CCEECCCCEECCCCEeCCC----CEeCCCCEE
Confidence 5 6778888888888877766 666666654
No 21
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=1.6e-16 Score=132.83 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=106.3
Q ss_pred hhHHHhhhhhhcccchhhhhhhhh------cccCCC-cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCC
Q 030076 17 KQDFGRFCNLFSTKSDIESRQQFQ------KWHNGG-GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV 89 (183)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~ 89 (183)
|.++++++.++.++..++...... ...... ..+.+++.|++++.|++++.|.+++.||++|.|++++.|+ ++
T Consensus 226 ~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~ 304 (459)
T PRK14355 226 IMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-GC 304 (459)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-CC
Confidence 677788888887755443321110 122232 3466677777777778888888888888888888888885 57
Q ss_pred EECCCcEECCCcEEeceEECCCCEECCCcEECCCC-------Cc------eeeccCCccc------------cC------
Q 030076 90 TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG-------FG------FFVDEHGNML------------KK------ 138 (183)
Q Consensus 90 ~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~-------~~------~~~~~~~~~~------------~~------ 138 (183)
+||++|.|++++.|.+++|++++.|++++.+.++. ++ ......+++. +.
T Consensus 305 ~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~ 384 (459)
T PRK14355 305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCG 384 (459)
T ss_pred EEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccc
Confidence 99999999999999988888888887766665420 00 0000001100 00
Q ss_pred --------CceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 139 --------PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 139 --------~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
....+++||++++||.++.+.++ +.||++++|++++.|.
T Consensus 385 ~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~----~~ig~~~~i~a~s~v~ 431 (459)
T PRK14355 385 TITCNYDGVKKHRTVIEDDVFVGSDVQFVAP----VTVGRNSLIAAGTTVT 431 (459)
T ss_pred eeecCcCCccccCcEecCCeEEcCCCEEeCC----cEECCCCEECCCCEEc
Confidence 01235677777777777777777 8889999999888873
No 22
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.73 E-value=5.2e-16 Score=116.62 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=31.9
Q ss_pred eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++.||++++|++++.+.++ ++||++++|++++.|.
T Consensus 149 ~~~~Ig~~~~ig~~~~v~~~----~~ig~~~~i~~~s~v~ 184 (205)
T cd03352 149 GSTTIGDNVIIGGQVGIAGH----LTIGDGVVIGAGSGVT 184 (205)
T ss_pred cccEECCCeEEcCCCEEeCC----cEECCCCEEcCCCEEe
Confidence 47889999999999999988 9999999999999884
No 23
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.72 E-value=2.3e-16 Score=127.19 Aligned_cols=135 Identities=27% Similarity=0.318 Sum_probs=78.5
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEEC------CCCEECCCCEECCCcEECCCcEEe-----------
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG------SGTVVGPAVTIGQSTNIGFNVALS----------- 104 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~------~~~~I~~~~~Ig~~~~Ig~~~~i~----------- 104 (183)
++..+..+.++++|++++.|+++++|.++++|++++.|| +++.|.+++.|+++|.|++++.|.
T Consensus 114 ~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~ 193 (343)
T PRK00892 114 KIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRG 193 (343)
T ss_pred EECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCC
Confidence 455556666666666666666666666655555555444 444555556677777777777773
Q ss_pred ---------ceEECCCCEECCCcEECCCCCceeeccCCccccC-Cce-------------------eceEECCCCEECCC
Q 030076 105 ---------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-PQL-------------------LNARIGNHVEIGAN 155 (183)
Q Consensus 105 ---------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~~~-------------------~~~~Ig~~~~Ig~~ 155 (183)
+++|++++.||+++.|....++.+...++++... .+. +.+.||++++|+.+
T Consensus 194 ~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~ 273 (343)
T PRK00892 194 GWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQ 273 (343)
T ss_pred ceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCC
Confidence 4789999999999988654333333333333321 111 13444444444444
Q ss_pred cEEcCCCCCCeEECCCCEECCCCeE
Q 030076 156 SCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 156 ~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
+.+.++ ++||++++|++++.|
T Consensus 274 ~~i~~~----~~ig~~~~i~~~s~v 294 (343)
T PRK00892 274 VGIAGH----LEIGDGVTITAMSGV 294 (343)
T ss_pred CEEcCC----CEECCCCEEecCCee
Confidence 444443 666666666666555
No 24
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.72 E-value=8.4e-17 Score=115.71 Aligned_cols=102 Identities=27% Similarity=0.435 Sum_probs=91.9
Q ss_pred hcccCCCcEEccceEECCCcEECCCcEEcc---CcEECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEECCCC
Q 030076 40 QKWHNGGGIFHQSACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDSC 112 (183)
Q Consensus 40 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I~~~~ 112 (183)
..+..++..+-.++.|+.++.|..++++.. ...||+++.|.++++|+. .++||++++||+++.|..|+|+++|
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~ 96 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNV 96 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCc
Confidence 356677777778888999999888888876 558999999999999965 5799999999999999999999999
Q ss_pred EECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 113 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 113 ~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
.||-++++.+ ++.||++|.||+|+.+.++
T Consensus 97 lIGmgA~vld--------------------ga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 97 LIGMGATVLD--------------------GAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred EEecCceEeC--------------------CcEECCCcEEccCCcccCC
Confidence 9999999998 8999999999999999988
No 25
>PLN02296 carbonate dehydratase
Probab=99.72 E-value=2.5e-16 Score=122.24 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=88.9
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEEC----------CCCEECCCcEECCCcE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVVG----------PAVTIGQSTNIGFNVA 102 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I~----------~~~~Ig~~~~Ig~~~~ 102 (183)
.+....++.+++.+.+++.|++++.|++++ .||+++.|+++|+|. ..++||++|.|+++|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 445566777777666666667777666655 567778888888885 3568999999999999
Q ss_pred EeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076 103 LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174 (183)
Q Consensus 103 i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I 174 (183)
|.+++|+++|+|+.++.|.+ ++.|++++.|+++++|.++ ++|.+++++
T Consensus 134 I~g~~Igd~v~IG~ga~I~~--------------------gv~Ig~~a~IgagSvV~~~----~~I~~~~~~ 181 (269)
T PLN02296 134 LHGCTVEDEAFVGMGATLLD--------------------GVVVEKHAMVAAGALVRQN----TRIPSGEVW 181 (269)
T ss_pred ecCCEECCCcEECCCcEECC--------------------CeEECCCCEECCCCEEecC----CEeCCCeEE
Confidence 99999999999999999987 8999999999999999988 777777764
No 26
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.72 E-value=1.6e-16 Score=115.43 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=73.7
Q ss_pred CCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEEec-----------eEECCCCEECCCcEEC
Q 030076 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSN-----------CIIGDSCIIHNGVCIG 121 (183)
Q Consensus 56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i~~-----------~~I~~~~~Ig~~~~i~ 121 (183)
++.+.|.+++.|.++++||+++.|++++.|. +.++||++|.|+++|.|.+ +.||+++.+..++.+.
T Consensus 3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~ 82 (164)
T cd04646 3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE 82 (164)
T ss_pred CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence 4444555555555566666666666666664 3467888888888888854 3566666666666665
Q ss_pred CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.++||++|+|++++.+.++ ++||+++.|+++++|.
T Consensus 83 ---------------------~~~IGd~~~Ig~~a~I~~g----v~Ig~~~~IgagsvV~ 117 (164)
T cd04646 83 ---------------------ALKIGNNNVFESKSFVGKN----VIITDGCIIGAGCKLP 117 (164)
T ss_pred ---------------------eeEECCCCEEeCCCEECCC----CEECCCCEEeCCeEEC
Confidence 7999999999999999988 8888888888888774
No 27
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.72 E-value=1.7e-16 Score=122.69 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=55.0
Q ss_pred CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCC
Q 030076 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC 112 (183)
Q Consensus 46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~ 112 (183)
...|++++.|++++.|++.+.|++++.||+++.|++++.|.+.+.||+++.|++++.|. .+.||+++
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~ 84 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN 84 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence 44556666666666666666666666677777777777777777778888888777774 46788888
Q ss_pred EECCCcEECC
Q 030076 113 IIHNGVCIGQ 122 (183)
Q Consensus 113 ~Ig~~~~i~~ 122 (183)
.|+++++|..
T Consensus 85 ~I~e~vtI~~ 94 (255)
T PRK12461 85 VIREGVTIHR 94 (255)
T ss_pred EECCccEEec
Confidence 8888888865
No 28
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.72 E-value=7.8e-16 Score=115.63 Aligned_cols=131 Identities=26% Similarity=0.346 Sum_probs=58.1
Q ss_pred CcEEccceEECCCcEECCCcEEccCc------EECCCcEECCCCEECCCCEECCCcEECCCcEEe---------------
Q 030076 46 GGIFHQSACIDSTVLIEVGAIVHSKA------VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS--------------- 104 (183)
Q Consensus 46 ~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~--------------- 104 (183)
+..+++.+++++++.|++++.|++++ .|++++.|++++.|+.+++|++++.|++++.|.
T Consensus 7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~ 86 (205)
T cd03352 7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVK 86 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEE
Confidence 33444444444444444444444434 444444444444444444555555555555442
Q ss_pred -----ceEECCCCEECCCcEECCCCCceeeccCCccccC-Cce-eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCC
Q 030076 105 -----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-PQL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 177 (183)
Q Consensus 105 -----~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~ 177 (183)
.+.|++++.|++++.+....+......++..... ... ..+.|++++++++++.+. +.+.||+++.|+++
T Consensus 87 ~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~----~~~~Ig~~~~ig~~ 162 (205)
T cd03352 87 IPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIA----GSTTIGDNVIIGGQ 162 (205)
T ss_pred cCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEc----cccEECCCeEEcCC
Confidence 3455555566665555432222222222222211 111 123333333333333333 33777777777777
Q ss_pred CeE
Q 030076 178 VQV 180 (183)
Q Consensus 178 ~~v 180 (183)
+.|
T Consensus 163 ~~v 165 (205)
T cd03352 163 VGI 165 (205)
T ss_pred CEE
Confidence 766
No 29
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=7.8e-17 Score=129.13 Aligned_cols=130 Identities=27% Similarity=0.389 Sum_probs=89.3
Q ss_pred ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC------
Q 030076 50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD------ 123 (183)
Q Consensus 50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~------ 123 (183)
.....|+..+.|.+++.+..++.||++|.||++|+|.+ +.|++++.|.+.++|.++.|+++|.|||.+.+.++
T Consensus 266 ~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~d-s~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 266 RGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKD-SVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD 344 (460)
T ss_pred cCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEe-eEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC
Confidence 33334444555555555555666677777777777753 48999999999999999999999999988888874
Q ss_pred -CCceeeccCCccc-------cCCceeceEECCCCEECCCcEE--cCCC-CCCeEECCCCEECCCCeE
Q 030076 124 -GFGFFVDEHGNML-------KKPQLLNARIGNHVEIGANSCI--DRGS-WRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 124 -~~~~~~~~~~~~~-------~~~~~~~~~Ig~~~~Ig~~~~v--~~g~-~~~~~Ig~~~~I~~~~~v 180 (183)
.++.|.+.+...+ ++.+++++.||+++.||+|++. -+|. ++.|+||+++.||+++.+
T Consensus 345 ~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~L 412 (460)
T COG1207 345 VHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQL 412 (460)
T ss_pred CeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcE
Confidence 3456666665443 3567788888888888888755 2333 555666666666665543
No 30
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.71 E-value=2.1e-16 Score=117.36 Aligned_cols=99 Identities=18% Similarity=0.323 Sum_probs=59.2
Q ss_pred cCCCcEEccceEECCCcEECCCcEEccCcE---------ECCCcEECCCCEEC----CCCEECCCcEECCCcEEeceEEC
Q 030076 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------LGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSNCIIG 109 (183)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~I~ 109 (183)
+..+.+|.+++.+.+++.|++++.|+++++ ||+++.|+++|+|+ .+++|++++.|++++.|.+++|+
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg 90 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVG 90 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEEC
Confidence 344455555555555555555555554443 34566666666663 23566666666666666666666
Q ss_pred CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
++|.|+.++.+.+ ++.||+++.|++++.+.++
T Consensus 91 ~~~~IG~ga~I~~--------------------g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 91 RNALVGMNAVVMD--------------------GAVIGENSIVAASAFVKAG 122 (192)
T ss_pred CCCEECCCcccCC--------------------CeEECCCCEEcCCCEECCC
Confidence 6666666666655 5666666666666666655
No 31
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5e-17 Score=135.07 Aligned_cols=138 Identities=24% Similarity=0.358 Sum_probs=109.9
Q ss_pred HHhhhhhhhHH-HhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC
Q 030076 10 YRLTKTYKQDF-GRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA 88 (183)
Q Consensus 10 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~ 88 (183)
|+.+...-.|+ .|+.+++.|...+...+.+. + -..+.|-++.+.+.+.+.++.++.||-++.||.++.|. +
T Consensus 279 ~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~-~------~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-N 350 (673)
T KOG1461|consen 279 LRSYDLVSKDIIQRWTYPLVPDINFSGNQTFS-L------ERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-N 350 (673)
T ss_pred cHHHHHHHHHHHHhhcccccccccCCCCceee-e------cccccccCccceehhhccccceEEecccccccCCCeee-c
Confidence 34455666776 77778888877764432221 1 11235667788888888899999999999999999996 5
Q ss_pred CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076 89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168 (183)
Q Consensus 89 ~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I 168 (183)
++||++|.||++++|.++.|+++|.||+||.|. .++|++++.|++++.+.+| +++
T Consensus 351 SVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~---------------------~aii~d~v~i~~~~~l~~g----~vl 405 (673)
T KOG1461|consen 351 SVIGANCRIGSNVRIKNSFIWNNVTIGDNCRID---------------------HAIICDDVKIGEGAILKPG----SVL 405 (673)
T ss_pred ceecCCCEecCceEEeeeeeecCcEECCCceEe---------------------eeEeecCcEeCCCcccCCC----cEE
Confidence 599999999999999999999999999999998 7999999999999999888 777
Q ss_pred CCCCEECCCCeE
Q 030076 169 GDHSKIDNLVQV 180 (183)
Q Consensus 169 g~~~~I~~~~~v 180 (183)
|.+.+++.+-++
T Consensus 406 ~~~VVv~~~~~l 417 (673)
T KOG1461|consen 406 GFGVVVGRNFVL 417 (673)
T ss_pred eeeeEeCCCccc
Confidence 777777766554
No 32
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.71 E-value=9.6e-17 Score=123.31 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=61.2
Q ss_pred CCCcEEccceEECCCcEECCCcEEccC-----cEECCCcEECCCCEECCCCEECCCcEECCCcEE---------eceEEC
Q 030076 44 NGGGIFHQSACIDSTVLIEVGAIVHSK-----AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL---------SNCIIG 109 (183)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~-----~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i---------~~~~I~ 109 (183)
..+..+.|++.+.+++.|++++.|.+. +.||+++.|..++.|+++++||++|.|+.++.| .+++|+
T Consensus 98 ~~~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIg 177 (269)
T TIGR00965 98 KAGFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIE 177 (269)
T ss_pred cCCEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEEC
Confidence 445556666666666666666655543 345555555555555555555555555555555 236777
Q ss_pred CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
++|+||+++.|.+ +++||++++|+++++|.++
T Consensus 178 Dnv~IGa~a~I~~--------------------GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 178 DNCFIGARSEIVE--------------------GVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CCCEECCCCEEcC--------------------CCEECCCCEEeCCCEECCC
Confidence 7777777777766 6777777777777777666
No 33
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.70 E-value=4.2e-16 Score=120.58 Aligned_cols=132 Identities=20% Similarity=0.217 Sum_probs=81.7
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCc------EECCCcEECCCCEECC------------CCEECCCcEECCCcEE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA------VLGANVCIGSGTVVGP------------AVTIGQSTNIGFNVAL 103 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~I~~~~~I~~------------~~~Ig~~~~Ig~~~~i 103 (183)
.+..+..|+|.+.|++++.|++++.|++++ .||+++.|++++.|+. .+.||+++.|++++.|
T Consensus 13 ~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI 92 (255)
T PRK12461 13 KLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTI 92 (255)
T ss_pred EECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEE
Confidence 344555666666666666666666555544 4455555555555543 3567788888888777
Q ss_pred e-------ceEECCCCEECCCcEECCCCCceeeccCCcccc-CCc-eeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076 104 S-------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-KPQ-LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174 (183)
Q Consensus 104 ~-------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I 174 (183)
. .+.||++|.|.+++.|.++. ...+...+. ... .+.+.||++++|+.++.+.++ ++||++++|
T Consensus 93 ~~gt~~g~~t~IG~~~~i~~~~~I~hd~----~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~----~~IG~~a~V 164 (255)
T PRK12461 93 HRGTKGGGVTRIGNDNLLMAYSHVAHDC----QIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQF----CRIGALAMM 164 (255)
T ss_pred ecCcccCCcEEEcccceeccCcEECCCC----EECCCcEECCCCccCCceEECCCeEEeCCCEECCC----CEECCCcEE
Confidence 4 24555555555444444321 111111111 111 237899999999999999988 999999999
Q ss_pred CCCCeEe
Q 030076 175 DNLVQVG 181 (183)
Q Consensus 175 ~~~~~v~ 181 (183)
++++.|.
T Consensus 165 g~gs~V~ 171 (255)
T PRK12461 165 AGGSRIS 171 (255)
T ss_pred CCCceEe
Confidence 9999885
No 34
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.70 E-value=1.1e-15 Score=109.88 Aligned_cols=110 Identities=21% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCcEEccceEECCCcEECCCcEEccC---cEECCCcEECCCCEECCC----CEECCCcEECCCcEEeceEECCCCEECCC
Q 030076 45 GGGIFHQSACIDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGPA----VTIGQSTNIGFNVALSNCIIGDSCIIHNG 117 (183)
Q Consensus 45 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~~----~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~ 117 (183)
....+.+++.|++++.|++++.|.+. +.|++++.|+++|.|... ++|++++.|++++.+.+++|+++++|+.+
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 90 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMG 90 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCC
Confidence 33334444444445555555544443 477788888888877643 67888888888888888888888888888
Q ss_pred cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCE-ECCCC
Q 030076 118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK-IDNLV 178 (183)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~-I~~~~ 178 (183)
+.+.. ++.|++++++++++.+.++ ..++++++ .++.+
T Consensus 91 ~~i~~--------------------~~~Ig~~~~vg~~~~v~~g----~~i~~~~v~~G~pa 128 (154)
T cd04650 91 AILLN--------------------GAKIGDHVIIGAGAVVTPG----KEIPDYSLVLGVPA 128 (154)
T ss_pred CEEeC--------------------CCEECCCCEECCCCEECCC----cEeCCCCEEeccCc
Confidence 88876 7888888888888888877 66777666 34433
No 35
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.70 E-value=2.7e-16 Score=130.32 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=85.9
Q ss_pred hhhhHHHhhhhhhcccchhhhhhhhhcc--------cCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC
Q 030076 15 TYKQDFGRFCNLFSTKSDIESRQQFQKW--------HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 86 (183)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~ 86 (183)
.+|.++.+.++++.++..+..... ..+ .....++.++++|.+++.+++++.|++++.|+ ++.|+++|.|+
T Consensus 215 ~~w~dI~t~~dl~~a~~~l~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~ 292 (430)
T PRK14359 215 ENFMGVNSKFELAKAEEIMQERIK-KNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIE 292 (430)
T ss_pred CEEeCCCCHHHHHHHHHHHHHHHH-HHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEe
Confidence 467777777777766433332211 111 12233455555555555666666665555544 44444444443
Q ss_pred C----CCEECCCcEECCCcEEeceEECCCCEECCCc----------EECCCCC-ceeeccCCcccc---CCceeceEECC
Q 030076 87 P----AVTIGQSTNIGFNVALSNCIIGDSCIIHNGV----------CIGQDGF-GFFVDEHGNMLK---KPQLLNARIGN 148 (183)
Q Consensus 87 ~----~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~----------~i~~~~~-~~~~~~~~~~~~---~~~~~~~~Ig~ 148 (183)
+ +++|++++.|++++.|.++.|+++|.|+... .+.+--+ ++.....++... .....++.||+
T Consensus 293 ~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~ 372 (430)
T PRK14359 293 ESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGK 372 (430)
T ss_pred ccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECC
Confidence 3 3455666666655655555555555333321 1111000 000000010000 00112589999
Q ss_pred CCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||+++.+.++ ++||++++|++++.|.
T Consensus 373 ~~~ig~~~~i~~~----~~ig~~~~i~~g~~v~ 401 (430)
T PRK14359 373 NVFIGSDTQLVAP----VNIEDNVLIAAGSTVT 401 (430)
T ss_pred CeEEcCCCEEeCC----cEECCCCEECCCCEEc
Confidence 9999999999988 9999999999999874
No 36
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.69 E-value=1.3e-15 Score=111.00 Aligned_cols=113 Identities=27% Similarity=0.416 Sum_probs=76.8
Q ss_pred cCCCcEEccceEECCCcEECCCcEEccCc----------EECCCcEECCCCEEC----CCCEECCCcEECCCcEEec-eE
Q 030076 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKA----------VLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSN-CI 107 (183)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~----------~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~-~~ 107 (183)
+..+.+|++++.+.+++.+++++.|++++ .||+++.|++++.|+ ..+.||+++.|++++.|.+ +.
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 34444455555444444444444444443 456666666666662 2456778888888888865 88
Q ss_pred ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
|+++|+|+.++.|. .+.||++++|++++.+. + +.|++++.+++++++.
T Consensus 85 Ig~~~~Ig~~~~I~---------------------~~~Ig~~~~Ig~~s~i~-~----~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 85 IGDNCFIGFRSVVF---------------------NAKVGDNCVIGHNAVVD-G----VEIPPGRYVPAGAVIT 132 (167)
T ss_pred ECCCCEECCCCEEE---------------------CCEECCCCEEcCCCEEe-C----CEeCCCCEECCCCEEc
Confidence 88888888888886 68899999999998884 4 6777888777777764
No 37
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.69 E-value=1e-15 Score=113.60 Aligned_cols=104 Identities=16% Similarity=0.345 Sum_probs=88.0
Q ss_pred eEECCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEE-----eceEECCCCEECCCcEECCCC
Q 030076 53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDG 124 (183)
Q Consensus 53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i-----~~~~I~~~~~Ig~~~~i~~~~ 124 (183)
..|++++.|++++.|.+++.||++|.|+++|.|++ .++|++++.|+++|.| .+++|++++.|++++.+.
T Consensus 9 p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~--- 85 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILH--- 85 (192)
T ss_pred CcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEc---
Confidence 34566666666777777888888888888888864 5789999999999999 468999999999999887
Q ss_pred CceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++|+++++||.++++..+ ++||+++.|++++.|.
T Consensus 86 ------------------~siIg~~~~IG~ga~I~~g----~~IG~~s~Vgags~V~ 120 (192)
T TIGR02287 86 ------------------GCIVGRNALVGMNAVVMDG----AVIGENSIVAASAFVK 120 (192)
T ss_pred ------------------CCEECCCCEECCCcccCCC----eEECCCCEEcCCCEEC
Confidence 8999999999999999888 8899999999888774
No 38
>PLN02472 uncharacterized protein
Probab=99.69 E-value=1.1e-15 Score=117.27 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----------ceEECCCCEECCCcEECC
Q 030076 57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----------NCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----------~~~I~~~~~Ig~~~~i~~ 122 (183)
..+.|.+++.+.+++.|++++.|+.+++|++. .+||+++.|+++|.|. +++|+++|.|++++.+.
T Consensus 64 ~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~- 142 (246)
T PLN02472 64 VDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR- 142 (246)
T ss_pred CCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC-
Confidence 33444444444444455555555555555432 4555555555555552 35555555555555554
Q ss_pred CCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
+++|+++++||.+++|..+ ++||++++|+++++|
T Consensus 143 --------------------~~~Igd~v~IG~~svI~~g----avIg~~~~Ig~gsvV 176 (246)
T PLN02472 143 --------------------SCTIEPECIIGQHSILMEG----SLVETHSILEAGSVL 176 (246)
T ss_pred --------------------CeEEcCCCEECCCCEECCC----CEECCCCEECCCCEE
Confidence 5566666666666666555 555555555555544
No 39
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.69 E-value=1.5e-15 Score=109.33 Aligned_cols=101 Identities=21% Similarity=0.412 Sum_probs=81.2
Q ss_pred CCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEE-----eceEECCCCEECCCcEECCCCCce
Q 030076 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDGFGF 127 (183)
Q Consensus 56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i-----~~~~I~~~~~Ig~~~~i~~~~~~~ 127 (183)
.+++.+.+++.|.+++.||++|.|++++.|.+ .+.||++|.|+++|.| .+++|+++++|++++.+.
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~------ 77 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILH------ 77 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEE------
Confidence 44555555566666677777777777787765 4789999999999998 568899999999999887
Q ss_pred eeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
++.||++++|++++++.++ ++||+++.|+++++|.
T Consensus 78 ---------------~~~Ig~~~~Ig~~~~I~~g----~~Ig~~~~Ig~~s~v~ 112 (155)
T cd04745 78 ---------------GCTIGRNALVGMNAVVMDG----AVIGEESIVGAMAFVK 112 (155)
T ss_pred ---------------CCEECCCCEECCCCEEeCC----CEECCCCEECCCCEeC
Confidence 7899999999999999988 8888888888887763
No 40
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.68 E-value=1.5e-15 Score=107.49 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=51.0
Q ss_pred EECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076 90 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168 (183)
Q Consensus 90 ~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I 168 (183)
.|++++.|+.++.| .+++|+++|.|++++.++... +.....+++|+++++|++++++.++ ++|
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~------------~~~~~~~v~Ig~~~~Ig~~a~I~~g----v~I 96 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL------------EPLQATPVIIEDDVFIGANCEVVEG----VIV 96 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcc------------cccccCCeEECCCCEECCCCEECCC----CEE
Confidence 33333444444443 235677777777777776410 0012237999999999999999988 888
Q ss_pred CCCCEECCCCeEe
Q 030076 169 GDHSKIDNLVQVG 181 (183)
Q Consensus 169 g~~~~I~~~~~v~ 181 (183)
|+++.|+++++|.
T Consensus 97 g~~~~Ig~g~~V~ 109 (139)
T cd03350 97 GKGAVLAAGVVLT 109 (139)
T ss_pred CCCCEEcCCCEEc
Confidence 8888888888874
No 41
>PLN02472 uncharacterized protein
Probab=99.68 E-value=1.1e-15 Score=117.35 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=90.5
Q ss_pred hcccCCCcEEccceEECCCcEECCCcEEccCcE---------ECCCcEECCCCEEC----------CCCEECCCcEECCC
Q 030076 40 QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------LGANVCIGSGTVVG----------PAVTIGQSTNIGFN 100 (183)
Q Consensus 40 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------ig~~~~I~~~~~I~----------~~~~Ig~~~~Ig~~ 100 (183)
.+.+....++.+++.+.+++.|++++.|+++++ ||+++.|+++|+|+ ..++|+++|.|+++
T Consensus 59 ~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~ 138 (246)
T PLN02472 59 VPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAY 138 (246)
T ss_pred CCccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCC
Confidence 344556667777777777777777777777554 67789999999995 35799999999999
Q ss_pred cEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076 101 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174 (183)
Q Consensus 101 ~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I 174 (183)
|.|.+++|+++|.||.++.|.+ +++|++++.|++++.+.+| ..|.++.+.
T Consensus 139 s~L~~~~Igd~v~IG~~svI~~--------------------gavIg~~~~Ig~gsvV~~g----~~Ip~g~~~ 188 (246)
T PLN02472 139 SLLRSCTIEPECIIGQHSILME--------------------GSLVETHSILEAGSVLPPG----RRIPTGELW 188 (246)
T ss_pred cEECCeEEcCCCEECCCCEECC--------------------CCEECCCCEECCCCEECCC----CEeCCCCEE
Confidence 9999999999999999999987 8999999999999988877 666665554
No 42
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.68 E-value=5.9e-16 Score=128.91 Aligned_cols=130 Identities=24% Similarity=0.304 Sum_probs=78.4
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC---
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG--- 124 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~--- 124 (183)
.+.+++.|++++.|++++.|++++.||++|.|++++.|+ ++.|+++|.|++++.|.+++|+++|.|++++.|.+..
T Consensus 257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~ 335 (451)
T TIGR01173 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335 (451)
T ss_pred EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEEC
Confidence 345555666666666666666666677777777777665 3467777777766666666666555555554444310
Q ss_pred ----Cc-e-----eeccCCc-----------------cccC---------CceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076 125 ----FG-F-----FVDEHGN-----------------MLKK---------PQLLNARIGNHVEIGANSCIDRGSWRDTVI 168 (183)
Q Consensus 125 ----~~-~-----~~~~~~~-----------------~~~~---------~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I 168 (183)
++ + +...+++ .... ....+++||++++||.++.+.++ ++|
T Consensus 336 ~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~----~~i 411 (451)
T TIGR01173 336 AGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP----VKV 411 (451)
T ss_pred CCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC----cEE
Confidence 00 0 0000100 0000 00125778888888888888877 899
Q ss_pred CCCCEECCCCeEee
Q 030076 169 GDHSKIDNLVQVGF 182 (183)
Q Consensus 169 g~~~~I~~~~~v~~ 182 (183)
|++++|+++++|.+
T Consensus 412 g~~~~i~~g~~v~~ 425 (451)
T TIGR01173 412 GDGATIAAGSTVTK 425 (451)
T ss_pred CCCCEEccCCEECc
Confidence 99999999998853
No 43
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.68 E-value=1.3e-15 Score=113.34 Aligned_cols=101 Identities=22% Similarity=0.362 Sum_probs=83.5
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcE---------ECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------LGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCII 108 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I 108 (183)
.+....+|++++.+.+++.|++++.|+++++ |++++.|+++|+|+. +++|++++.|++++.+.+++|
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI 91 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI 91 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence 4455566777777666677777777777664 566788888888855 368999999999999999999
Q ss_pred CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
+++|+||.++.+.+ ++.||+++.|+++++|.++.
T Consensus 92 G~~v~IG~ga~V~~--------------------g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 92 GRDALVGMNSVIMD--------------------GAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred CCCCEECcCCccCC--------------------CcEECCCCEEcCCCEEeCCc
Confidence 99999999999987 89999999999999999883
No 44
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.68 E-value=1.5e-15 Score=109.24 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=81.9
Q ss_pred ECCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEec-----eEECCCCEECCCcEECCCCCc
Q 030076 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSN-----CIIGDSCIIHNGVCIGQDGFG 126 (183)
Q Consensus 55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~-----~~I~~~~~Ig~~~~i~~~~~~ 126 (183)
+.++..+.+++.|.+++.||+++.|++++.|.+. ++|+++|.|+++|.|.. ++|++++.|++++.+.
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~----- 77 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH----- 77 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----
Confidence 3445555555666667777777777778877654 68999999999999864 7899999999999986
Q ss_pred eeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++|+++++|++++.+..+ ++||+++.+++++.+.
T Consensus 78 ----------------~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 78 ----------------GAKVGNYVIVGMGAILLNG----AKIGDHVIIGAGAVVT 112 (154)
T ss_pred ----------------CcEECCCCEEcCCCEEeCC----CEECCCCEECCCCEEC
Confidence 7899999999999999887 8888888888887763
No 45
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.67 E-value=3.5e-16 Score=127.80 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=109.5
Q ss_pred hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC
Q 030076 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ 93 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~ 93 (183)
.++|.++++++.++.++..++.......+......+.+.+.+.+++.|++++.| .++.|+++|.|+. .+. +++|++
T Consensus 238 ~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~-~s~ig~ 313 (380)
T PRK05293 238 KGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVE-HSVLFQ 313 (380)
T ss_pred CCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eec-ceEEcC
Confidence 468999999998888877766443322233333344455556666777777666 3556666666642 343 569999
Q ss_pred CcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCE
Q 030076 94 STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 173 (183)
Q Consensus 94 ~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~ 173 (183)
+|.|+++|.|.+++|+++|.|++++.+. +++|++++.|++++.+..+.....+||+++.
T Consensus 314 ~~~I~~~~~i~~svi~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~ 372 (380)
T PRK05293 314 GVQVGEGSVVKDSVIMPGAKIGENVVIE---------------------RAIIGENAVIGDGVIIGGGKEVITVIGENEV 372 (380)
T ss_pred CCEECCCCEEECCEEeCCCEECCCeEEe---------------------EEEECCCCEECCCCEEcCCCceeEEEeCCCC
Confidence 9999999999999999999999999997 8999999999999999887444488999999
Q ss_pred ECCCCeEe
Q 030076 174 IDNLVQVG 181 (183)
Q Consensus 174 I~~~~~v~ 181 (183)
|.+++++|
T Consensus 373 ~~~~~~~~ 380 (380)
T PRK05293 373 IGVGTVIG 380 (380)
T ss_pred CCCCcEeC
Confidence 99999876
No 46
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.67 E-value=2.6e-15 Score=116.27 Aligned_cols=104 Identities=17% Similarity=0.269 Sum_probs=59.3
Q ss_pred CCCcEEccceEECCCcEECCCcEEcc-----CcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEEC
Q 030076 44 NGGGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIG 109 (183)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~ 109 (183)
..+..+.+++++++++.|++++.|.+ +++|++++.|+.++.|++++.||++|.|+.++.|. +++|+
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIg 180 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE 180 (272)
T ss_pred cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEc
Confidence 44455555556666666655555553 33344444444444444444555555555555443 35677
Q ss_pred CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCC
Q 030076 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 171 (183)
Q Consensus 110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~ 171 (183)
++|+||.++.|.. +++||++++|++++.+.++ +.|++.
T Consensus 181 Dnv~IGa~s~I~~--------------------Gv~IGdgavIgag~vV~~g----t~I~~~ 218 (272)
T PRK11830 181 DNCFIGARSEVVE--------------------GVIVEEGSVLGMGVFLGQS----TKIYDR 218 (272)
T ss_pred CCCEECCCCEEcC--------------------CCEECCCCEEcCCCEEcCC----eEECcC
Confidence 7777777776655 6677777777777777666 555543
No 47
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.67 E-value=3.3e-15 Score=108.91 Aligned_cols=103 Identities=27% Similarity=0.442 Sum_probs=83.5
Q ss_pred EECCCcEECCCcEEccCcEECCCcEECCCCEECC----CCEECCCcEECCCcEEe-----ceEECCCCEECCCcEECCCC
Q 030076 54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIGQDG 124 (183)
Q Consensus 54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig~~~~i~~~~ 124 (183)
.|++++.|.+++.|.+++.||++|.|++++.|+. .+.||++|.|++++.|. .+.|++++.|++++.+..
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g-- 81 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG-- 81 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC--
Confidence 4555556666666666777777777777777755 46899999999999994 578999999999999986
Q ss_pred CceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
++.||++++|++++.+. . ++||+++.|++++.|.
T Consensus 82 ------------------~~~Ig~~~~Ig~~~~I~-~----~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 82 ------------------PAYIGDNCFIGFRSVVF-N----AKVGDNCVIGHNAVVD 115 (167)
T ss_pred ------------------CEEECCCCEECCCCEEE-C----CEECCCCEEcCCCEEe
Confidence 79999999999999986 3 7888888888888874
No 48
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.67 E-value=3.5e-15 Score=107.23 Aligned_cols=100 Identities=27% Similarity=0.450 Sum_probs=73.8
Q ss_pred cceEECCCcEECCCcEEccC---cEECCCcEECCCCEECCC----CEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076 51 QSACIDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGPA----VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (183)
Q Consensus 51 ~~~~i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~~----~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~ 123 (183)
++.++++++.|++++.|.++ ++||+++.|++++.|... ++|++++.|+.+|.+.+++|+++++|++++.+..
T Consensus 16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~- 94 (153)
T cd04645 16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILD- 94 (153)
T ss_pred EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcC-
Confidence 33444455555555544432 367777777777777653 6888888888888888888888899888888876
Q ss_pred CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174 (183)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I 174 (183)
++.|+++++|++++.+.++ +.+++++.+
T Consensus 95 -------------------~~~ig~~~~ig~~~~v~~~----~~i~~~~~~ 122 (153)
T cd04645 95 -------------------GAVIGKGSIVAAGSLVPPG----KVIPPGSLV 122 (153)
T ss_pred -------------------CCEECCCCEECCCCEECCC----CEeCCCCEE
Confidence 7888888888888888776 667766666
No 49
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.67 E-value=3.8e-15 Score=111.73 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=91.9
Q ss_pred ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCc--------
Q 030076 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG-------- 126 (183)
Q Consensus 55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~-------- 126 (183)
+++++.|+.++.|. ++.||+++.|+++|.|. +++||+++.|++++.+.+++||++|.|++++.+....+.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~ 82 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence 34555666666664 47888888888999996 569999999999999999999999999999999864211
Q ss_pred eeecc---------CCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 127 FFVDE---------HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 127 ~~~~~---------~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
++... ...........+++||++++||.++++.+| ++||++++|+++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g----v~Ig~~~~I~~gs~v~ 142 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG----VTIGNGAVIAAGAVVT 142 (204)
T ss_pred cccccccccccccccccccccccCCCeEECCCCEECCCCEECCC----CEECCCCEECCCCEEC
Confidence 00000 000001113358999999999999999988 9999999999999874
No 50
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.66 E-value=1e-15 Score=114.21 Aligned_cols=116 Identities=27% Similarity=0.270 Sum_probs=62.5
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCCEE
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSCII 114 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~I 114 (183)
.|.|++.|++++.|++-|.|++++.|++++.|+++++|.+.++||.++.|-+.+.|. ..+||++|.|
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~I 90 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTI 90 (260)
T ss_pred eeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeE
Confidence 333444444444444444444444444444444444444445555555555555551 4667777777
Q ss_pred CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
...++|.... ....+-+.||+++++-+.+-|.. +|+||+++++.+++.+
T Consensus 91 RE~vTi~~GT-------------~~g~g~T~IGdnnl~May~HVAH----DC~iGn~~ilaNnatL 139 (260)
T COG1043 91 REFVTIHRGT-------------VQGGGVTRIGDNNLIMAYAHVAH----DCVIGNNCILANNATL 139 (260)
T ss_pred eeEEEEeccc-------------cCCceeEEECCCCEEEEeeeeec----cceecCcEEEecCCeE
Confidence 7777776420 01112466666666666666653 3777777777777766
No 51
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.66 E-value=3.6e-15 Score=116.07 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=63.2
Q ss_pred cCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEEC
Q 030076 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG 109 (183)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~ 109 (183)
+.....|++.+.|++++.|++.+.|++++.||++|.|++++.|.++++||++|.|++++.|. .++||
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 34555666677777777777777777777777778888888888788889999999998885 48899
Q ss_pred CCCEECCCcEECC
Q 030076 110 DSCIIHNGVCIGQ 122 (183)
Q Consensus 110 ~~~~Ig~~~~i~~ 122 (183)
++|.|+++++|..
T Consensus 85 ~~~~I~e~~~I~~ 97 (262)
T PRK05289 85 DNNTIREFVTINR 97 (262)
T ss_pred CCCEECCCeEEec
Confidence 9999999999975
No 52
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.65 E-value=4.6e-15 Score=123.93 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=27.0
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.++||++|+||.++.+.++ +.||++++|++++.|.
T Consensus 394 ~~~Igd~~~ig~~~~i~~~----~~ig~~~~i~~gs~v~ 428 (456)
T PRK09451 394 KTIIGDDVFVGSDTQLVAP----VTVGKGATIGAGTTVT 428 (456)
T ss_pred CCEECCCcEECCCCEEeCC----cEECCCCEECCCCEEc
Confidence 4667777777777777776 8888888888888874
No 53
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.65 E-value=1.8e-15 Score=127.13 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=91.7
Q ss_pred EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC----
Q 030076 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG---- 124 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~---- 124 (183)
+.++++|++++.|++++.|.+++.|+++|.|+++|.|++ ++|+++|.|++++.|.+++|++++.|++++.+....
T Consensus 267 i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~-svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 267 IEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTD-SVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGE 345 (481)
T ss_pred ccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEee-eEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECC
Confidence 355666777777777777777788888888888888854 589999999999999888888888887777665421
Q ss_pred ---Cce-ee-----ccCCccc-cCCceeceEECCCCEECCCcEEcCCC---CCCeEECCCCEECCCCeE
Q 030076 125 ---FGF-FV-----DEHGNML-KKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 125 ---~~~-~~-----~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~v~~g~---~~~~~Ig~~~~I~~~~~v 180 (183)
++. .. ..++.+. +....+.++||++|.||+++++.... .+.++||+++.|++++.+
T Consensus 346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 111 11 1112211 12234679999999999999886432 345788888888888766
No 54
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.65 E-value=4.1e-15 Score=106.89 Aligned_cols=101 Identities=30% Similarity=0.403 Sum_probs=81.7
Q ss_pred CCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEec-----eEECCCCEECCCcEECCCCCce
Q 030076 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSN-----CIIGDSCIIHNGVCIGQDGFGF 127 (183)
Q Consensus 56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~-----~~I~~~~~Ig~~~~i~~~~~~~ 127 (183)
++++.|++++.|.+++.|++++.|++++.|.++ ++||+++.|+++|.|.. ++|++++.|++++.+.
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~------ 76 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLH------ 76 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEe------
Confidence 455566666666667777888888888877654 58999999999999976 5999999999999997
Q ss_pred eeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++|+++++|++++.+.++ ++|++++.|++++.+.
T Consensus 77 ---------------~~~Ig~~~~Ig~~~~v~~~----~~ig~~~~ig~~~~v~ 111 (153)
T cd04645 77 ---------------GCTIGDNCLIGMGAIILDG----AVIGKGSIVAAGSLVP 111 (153)
T ss_pred ---------------eeEECCCCEECCCCEEcCC----CEECCCCEECCCCEEC
Confidence 7889999999999999877 7788888887777663
No 55
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.65 E-value=3.9e-15 Score=114.46 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=65.1
Q ss_pred CcEEccCcEECCCcEECCCCEEC-----CCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076 64 GAIVHSKAVLGANVCIGSGTVVG-----PAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 137 (183)
Q Consensus 64 ~~~i~~~~~ig~~~~I~~~~~I~-----~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~ 137 (183)
++++.|++.+++++.|+++++|. .++.||+++.|..++.|. ++.||++|+|.+++.|+.. +.
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~------------~e 167 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------LE 167 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCC------------cc
Confidence 44444444444444444444443 334555555555555553 3556666666666655420 11
Q ss_pred CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
..+..+++|+++|+||++++|.+| ++||++|+|+++++|+
T Consensus 168 p~~~~~ViIgDnv~IGa~a~I~~G----V~IG~gavIGaGavI~ 207 (269)
T TIGR00965 168 PLQANPTIIEDNCFIGARSEIVEG----VIVEEGSVISMGVFIG 207 (269)
T ss_pred cCCCCCeEECCCCEECCCCEEcCC----CEECCCCEEeCCCEEC
Confidence 123348999999999999999998 8888888888888884
No 56
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.65 E-value=1.3e-15 Score=113.72 Aligned_cols=115 Identities=30% Similarity=0.371 Sum_probs=91.6
Q ss_pred EECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccC
Q 030076 60 LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138 (183)
Q Consensus 60 ~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~ 138 (183)
.|++.+.|++++.|+++|.||+.|+|++++.|++++.|+++++|. .+.||+++.|-+.+.|+.+ ++.....
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~--------pQdlKyk 76 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGED--------PQDLKYK 76 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCC--------CcccccC
Confidence 455556666667777788888888888888888899999999985 5789999999999999974 2332333
Q ss_pred CceeceEECCCCEECCCcEEcCCCC---CCeEECCCCEECCCCeEee
Q 030076 139 PQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 139 ~~~~~~~Ig~~~~Ig~~~~v~~g~~---~~~~Ig~~~~I~~~~~v~~ 182 (183)
.+...++||+++.|.+.+++..|+. ..|.||++..+++.+.|.|
T Consensus 77 ge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAH 123 (260)
T COG1043 77 GEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAH 123 (260)
T ss_pred CCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeec
Confidence 4456899999999999999999983 4589999998888888865
No 57
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.65 E-value=2.9e-15 Score=125.97 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=37.7
Q ss_pred cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECC
Q 030076 47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHN 116 (183)
Q Consensus 47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~ 116 (183)
.++.++++|++++.|++++.|.++++||++|.|++++.|+ +++|+++|.|+. +.+.+++|++++.|++
T Consensus 266 ~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~ 333 (482)
T PRK14352 266 TWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGP 333 (482)
T ss_pred EEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECC
Confidence 3455556666666666666666666666666666666664 335555555432 3344444444444433
No 58
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.64 E-value=6e-15 Score=109.93 Aligned_cols=94 Identities=33% Similarity=0.501 Sum_probs=61.0
Q ss_pred CcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccCCcee
Q 030076 64 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL 142 (183)
Q Consensus 64 ~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 142 (183)
++.+.+++.|++++.|+++++|+++++|+++|.|+.++.|. ++.|+++++|++++.+..
T Consensus 93 ~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------------------- 152 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG-------------------- 152 (201)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeC--------------------
Confidence 33444444555555555555555555555556665555553 466777777777777765
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.+.|+++++|++++++.++ ++||++++|++++++.
T Consensus 153 ~~~ig~~~~ig~~~~v~~~----~~i~~~~~i~~~~~v~ 187 (201)
T TIGR03570 153 GVVIGEGVFIGAGATIIQG----VTIGAGAIVGAGAVVT 187 (201)
T ss_pred CcEECCCCEECCCCEEeCC----CEECCCCEECCCCEEC
Confidence 6777778888888777776 7777777777777763
No 59
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.63 E-value=6.3e-15 Score=101.33 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=9.7
Q ss_pred EeceEECCCCEECCCcEECC
Q 030076 103 LSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 103 i~~~~I~~~~~Ig~~~~i~~ 122 (183)
+.+++|+++|+|++++.+.+
T Consensus 65 ~~~~~Ig~~~~Ig~~~~v~~ 84 (119)
T cd03358 65 LKGTTVKRGASIGANATILP 84 (119)
T ss_pred cCCcEECCCcEECcCCEEeC
Confidence 34444555555555555543
No 60
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.63 E-value=1.1e-14 Score=111.15 Aligned_cols=99 Identities=23% Similarity=0.433 Sum_probs=77.3
Q ss_pred CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEECCCCEE
Q 030076 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIGDSCII 114 (183)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~~~~~I 114 (183)
..+..+.++++|++++.|+.++.|.+++.||++|.|++++.|.++++|+++|.|+.++.|. .++|+++|+|
T Consensus 90 ~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~I 169 (231)
T TIGR03532 90 EPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLI 169 (231)
T ss_pred CCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEE
Confidence 3344444455555555555566666667777777777777777788999999999999996 4889999999
Q ss_pred CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
+.++.+.+ ++.||++++|++++++.+..
T Consensus 170 G~gsvI~~--------------------g~~Ig~~~~IgagsvV~~di 197 (231)
T TIGR03532 170 GANAVILE--------------------GVRVGKGAVVAAGAIVTEDV 197 (231)
T ss_pred CCCCEEcC--------------------CCEECCCCEECCCCEEcccc
Confidence 99999987 89999999999999998664
No 61
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.63 E-value=1.1e-14 Score=121.18 Aligned_cols=127 Identities=18% Similarity=0.204 Sum_probs=81.0
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCc
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFG 126 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~ 126 (183)
.+++.+.|++++.|++++.|++++.|+++|.|++++.|. +++||++|.|++++.|. +++|+++|.|++++.+.+
T Consensus 264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~---- 338 (446)
T PRK14353 264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLE-GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN---- 338 (446)
T ss_pred EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEe-ccEECCCcEECCCeEEeccceecCCeEEcCceEEec----
Confidence 455556666666666666666666666666666666663 46888888888888886 688888888888877742
Q ss_pred eeeccCCcc-ccCCceeceEECCCCEECCCcEEcCCC---CCCeEECCCCEECCCCeE
Q 030076 127 FFVDEHGNM-LKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 127 ~~~~~~~~~-~~~~~~~~~~Ig~~~~Ig~~~~v~~g~---~~~~~Ig~~~~I~~~~~v 180 (183)
....+... ......++++||++|.|++++++.... .++++||+++.|++++.|
T Consensus 339 -~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i 395 (446)
T PRK14353 339 -AKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSAL 395 (446)
T ss_pred -eEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEE
Confidence 11111221 122334478899999999887662110 123666666666666655
No 62
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.63 E-value=1.3e-14 Score=107.31 Aligned_cols=76 Identities=32% Similarity=0.515 Sum_probs=41.1
Q ss_pred CCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEc
Q 030076 81 SGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 159 (183)
Q Consensus 81 ~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~ 159 (183)
++++|++++.||++|.|++++.| .++.|+++|+|++++.+.. ++.||++++|++++++.
T Consensus 107 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~--------------------~~~ig~~~~ig~~~~v~ 166 (197)
T cd03360 107 AGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSG--------------------GVTIGEGAFIGAGATII 166 (197)
T ss_pred CCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcC--------------------CcEECCCCEECCCCEEc
Confidence 33333333333333444444443 2344556666666666654 56666666666666666
Q ss_pred CCCCCCeEECCCCEECCCCeE
Q 030076 160 RGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 160 ~g~~~~~~Ig~~~~I~~~~~v 180 (183)
++ ++||+++.|+++++|
T Consensus 167 ~~----~~ig~~~~v~~~~~v 183 (197)
T cd03360 167 QG----VTIGAGAIIGAGAVV 183 (197)
T ss_pred CC----CEECCCCEECCCCEE
Confidence 55 666666666666655
No 63
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.62 E-value=2.6e-15 Score=125.35 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=61.8
Q ss_pred CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~ 122 (183)
...+++++.|++++.|..++.|.+++.||++|.|+++|.|+ +++|+++|.|+++|.|.+++|+++|.|++++.|.+
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~ 338 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP 338 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECC
Confidence 34455666666666666667777778888888888888885 56999999999999999999999999999998875
No 64
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.6e-15 Score=121.27 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=93.3
Q ss_pred hhhhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE
Q 030076 12 LTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI 91 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I 91 (183)
.+.+||+|++++..||.++++++...+...+...+..|+......|++++..++.+ .++.|+++|.|.. .|. +++|
T Consensus 239 ~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~-nSVL 314 (393)
T COG0448 239 EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVE-NSVL 314 (393)
T ss_pred eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEE-eeEE
Confidence 45679999999999999999999866655666666666666666666666555543 3555555555532 342 3466
Q ss_pred CCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC---------
Q 030076 92 GQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS--------- 162 (183)
Q Consensus 92 g~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~--------- 162 (183)
+.++.|+++|.|.+|+|..+|.||.+|.+. .++|.++|.|++|+++....
T Consensus 315 ~~~v~I~~gs~i~~svim~~~~IG~~~~l~---------------------~aIIDk~v~I~~g~~i~~~~~~~d~~~~~ 373 (393)
T COG0448 315 FRGVRIGKGSVIENSVIMPDVEIGEGAVLR---------------------RAIIDKNVVIGEGVVIGGDKPEEDRKRFR 373 (393)
T ss_pred ecCeEECCCCEEEeeEEeCCcEECCCCEEE---------------------EEEeCCCcEeCCCcEEcCCcchhcccccc
Confidence 677777777777777777777777777776 56666666666666665553
Q ss_pred --CCCeEECCCCEECCC
Q 030076 163 --WRDTVIGDHSKIDNL 177 (183)
Q Consensus 163 --~~~~~Ig~~~~I~~~ 177 (183)
...++|+++..+..+
T Consensus 374 ~~~~ivVv~k~~~~~~~ 390 (393)
T COG0448 374 SEEGIVVVPKGMVIKLD 390 (393)
T ss_pred ccCCcEEEecccEeccc
Confidence 344556665555443
No 65
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.61 E-value=2.2e-14 Score=119.61 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.0
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||++++||+++++.++ ++||+++.|++++.|.
T Consensus 390 ~~~Ig~~~~iG~~~~i~~~----~~ig~~~~v~~~~~v~ 424 (450)
T PRK14360 390 RTVIGDRSKTGANSVLVAP----ITLGEDVTVAAGSTIT 424 (450)
T ss_pred CcEeCCCeEeCCCCEEeCC----cEECCCCEECCCCEEC
Confidence 6889999999999999888 9999999999999884
No 66
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.61 E-value=3.7e-14 Score=102.95 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.5
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
....+..+.+++++++++.|++++.|.++++|+++|.|++++.|+++++|+++|.|++++.|.+++|++++.|++++.+.
T Consensus 7 ~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~ 86 (163)
T cd05636 7 TVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG 86 (163)
T ss_pred ccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe
Confidence 34555678888999999999999999999999999999999999988999999999999999999999999999988876
No 67
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.61 E-value=4.8e-14 Score=105.04 Aligned_cols=95 Identities=28% Similarity=0.484 Sum_probs=59.8
Q ss_pred EEccceEECCCcEECCCcEEcc------CcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEE
Q 030076 48 IFHQSACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCI 120 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~------~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i 120 (183)
.+.+.+.+.+++.|++++.|++ ++.|+++|.|++++.|..++.|++++.|+.++.+. ++.|+++|+|++++.+
T Consensus 89 ~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 89 LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATI 168 (201)
T ss_pred EecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEE
Confidence 4444555555555554544444 44555555555555555555666666666666664 5777777777777777
Q ss_pred CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
.+ ++.|+++++|++++++....
T Consensus 169 ~~--------------------~~~i~~~~~i~~~~~v~~~~ 190 (201)
T TIGR03570 169 IQ--------------------GVTIGAGAIVGAGAVVTKDI 190 (201)
T ss_pred eC--------------------CCEECCCCEECCCCEECCcC
Confidence 65 78888888888888887653
No 68
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.60 E-value=4.4e-14 Score=99.11 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=57.8
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC----CCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~ 123 (183)
.+.|.+++...+.|++++.|.+++.+..++.|++++.|. .+++|+++|.|++++.|. + .+..
T Consensus 3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~------------~l~G- 68 (147)
T cd04649 3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-G------------TLSG- 68 (147)
T ss_pred EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-E------------ECCC-
Confidence 345556666666666666666666666666666666665 444555555555544443 1 1111
Q ss_pred CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
....++.||++++||+++.| + +.||++++|+++++|.
T Consensus 69 ---------------~~~~pV~IG~~~~IG~ga~I--g----v~IG~~~vIGaGsvV~ 105 (147)
T cd04649 69 ---------------GGNNVISIGKRCLLGANSGI--G----ISLGDNCIVEAGLYVT 105 (147)
T ss_pred ---------------CcccCEEECCCCEECCCCEE--e----EEECCCCEECCCCEEe
Confidence 00114777777777777777 4 6777777777777663
No 69
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.60 E-value=3.8e-14 Score=102.70 Aligned_cols=100 Identities=23% Similarity=0.372 Sum_probs=77.3
Q ss_pred eEECCCcEECCCcEEccC---cEECCCcEECCCCEECC------------CCEECCCcEECCCcEEeceEECCCCEECCC
Q 030076 53 ACIDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGP------------AVTIGQSTNIGFNVALSNCIIGDSCIIHNG 117 (183)
Q Consensus 53 ~~i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~------------~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~ 117 (183)
.++++.+.|++++.|.++ +.||++|.|++++.|.+ .++|++++.|++++.+.+++|++++.|+++
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~ 101 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKN 101 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCC
Confidence 445555555555555543 46777777777777754 458999999999999999999999999999
Q ss_pred cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECC
Q 030076 118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN 176 (183)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~ 176 (183)
+.|++ ++.|+++++|++++++.++ +.|+++++++.
T Consensus 102 ~~Ig~--------------------~~~I~~~~~i~~g~~V~~~----~~i~~~~vv~g 136 (161)
T cd03359 102 CVIGR--------------------RCIIKDCVKILDGTVVPPD----TVIPPYSVVSG 136 (161)
T ss_pred CEEcC--------------------CCEECCCcEECCCCEECCC----CEeCCCCEEec
Confidence 99987 7888888888888888877 77777777763
No 70
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.60 E-value=4.9e-14 Score=104.17 Aligned_cols=95 Identities=31% Similarity=0.515 Sum_probs=59.3
Q ss_pred cEEccceEECCCcEECCCcEEccCcEECCCcEECC------CCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcE
Q 030076 47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGS------GTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVC 119 (183)
Q Consensus 47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~------~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~ 119 (183)
..+++.+.+.+++.++.++.|.++++|++++.||+ ++.|+.++.|+++|.|+.++.+. +++|+++|+|+.++.
T Consensus 85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~ 164 (197)
T cd03360 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGAT 164 (197)
T ss_pred eEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCE
Confidence 34455555555555555555555555554444444 44444445555555555555553 467777777777777
Q ss_pred ECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
+.+ ++.|++++++++++++.+.
T Consensus 165 v~~--------------------~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 165 IIQ--------------------GVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred EcC--------------------CCEECCCCEECCCCEEcCC
Confidence 775 7888888888888888765
No 71
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=119.07 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=29.5
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||++++||.++++.++ ++||+++.|++++.|.
T Consensus 383 ~~~Igd~~~ig~~~~i~~g----v~Ig~~~~i~ag~~v~ 417 (448)
T PRK14357 383 PTFIEDGAFIGSNSSLVAP----VRIGKGALIGAGSVIT 417 (448)
T ss_pred CcEECCCCEECCCCEEeCC----cEECCCCEEcCCCEEC
Confidence 5788888888888888877 8899999999998874
No 72
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=110.72 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCCcEEccCcEECCCcEECCCCEEC-----CCCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCcc
Q 030076 62 EVGAIVHSKAVLGANVCIGSGTVVG-----PAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 135 (183)
Q Consensus 62 ~~~~~i~~~~~ig~~~~I~~~~~I~-----~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~ 135 (183)
..+++|.++++|++++.|++++.|. .++.|++++.|+.++.|.+ +.||++|+|++++.|...
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~------------ 168 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------ 168 (272)
T ss_pred cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCC------------
Confidence 3444555555555555555555544 2334555555555555432 456666666666666531
Q ss_pred ccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 136 ~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
....+..+++|+++|+||+++++..| ++||++++|+++++|+
T Consensus 169 ~~~~~~~~viIgDnv~IGa~s~I~~G----v~IGdgavIgag~vV~ 210 (272)
T PRK11830 169 LEPLQANPVIIEDNCFIGARSEVVEG----VIVEEGSVLGMGVFLG 210 (272)
T ss_pred ccccCcCCeEEcCCCEECCCCEEcCC----CEECCCCEEcCCCEEc
Confidence 01112237999999999999999988 8888888888888885
No 73
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.58 E-value=6.2e-14 Score=98.38 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=82.1
Q ss_pred CCcEEccceEECCCcEECCCcEEccCcEECCCcEEC----CCCEECCCCEECCCcEECCCcEE-ec----eEECCCCEEC
Q 030076 45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG----SGTVVGPAVTIGQSTNIGFNVAL-SN----CIIGDSCIIH 115 (183)
Q Consensus 45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~----~~~~I~~~~~Ig~~~~Ig~~~~i-~~----~~I~~~~~Ig 115 (183)
++..+.+.++|++++.|.+++.+..++.||+++.|. .++.|+.++.|++++.|. +.+ .. +.|+++|+||
T Consensus 6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEEC
Confidence 456678888999999999999999999999999988 999999999999999998 555 23 7899999999
Q ss_pred CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
+++.| ++.||+++.||+|++|.++
T Consensus 84 ~ga~I----------------------gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 84 ANSGI----------------------GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CCCEE----------------------eEEECCCCEECCCCEEeCC
Confidence 99999 4789999999999999888
No 74
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.58 E-value=7.6e-14 Score=95.88 Aligned_cols=98 Identities=24% Similarity=0.287 Sum_probs=58.1
Q ss_pred CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076 58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 137 (183)
Q Consensus 58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~ 137 (183)
++.|++++.|++++.|++++.|++++.|.+.++|+++|.|++++.+.+..+ .+..+..++.+
T Consensus 4 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~----------------- 65 (119)
T cd03358 4 NCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWEL----------------- 65 (119)
T ss_pred CCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-Ccccccccccc-----------------
Confidence 334444444444444444444444444444445555555555544443322 12222222333
Q ss_pred CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.+++|+++++|++++++.++ ++|++++.|++++.+.
T Consensus 66 ----~~~~Ig~~~~Ig~~~~v~~~----~~ig~~~~i~~~~~v~ 101 (119)
T cd03358 66 ----KGTTVKRGASIGANATILPG----VTIGEYALVGAGAVVT 101 (119)
T ss_pred ----CCcEECCCcEECcCCEEeCC----cEECCCCEEccCCEEe
Confidence 38999999999999999887 8999999999988874
No 75
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.58 E-value=5.9e-14 Score=117.99 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCCcEEccceEECCCcEECCCcEEccCcE-----ECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCC
Q 030076 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAV-----LGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNG 117 (183)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~-----ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~ 117 (183)
+.+..|++++.|.+++.|++++.|++++. |+++|.|++++.|. +++|++++.|++++.+. ++.|++++.|+++
T Consensus 274 g~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~-~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~ 352 (481)
T PRK14358 274 GRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLE-GAEVGAGSDVGPFARLRPGTVLGEGVHIGNF 352 (481)
T ss_pred CCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceec-CCeEeCceEECCccEEcCCcEECCCCEECCC
Confidence 34555666666655555666666665543 45555555555553 34666666666666663 4556666666664
Q ss_pred cEECCCCC------------ceeeccCCcccc---------CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECC
Q 030076 118 VCIGQDGF------------GFFVDEHGNMLK---------KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN 176 (183)
Q Consensus 118 ~~i~~~~~------------~~~~~~~~~~~~---------~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~ 176 (183)
+.+.+..+ +.....+++... .....++.||++++||+++.+.++ ++||+++.|++
T Consensus 353 ~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~----~~Ig~~~~i~~ 428 (481)
T PRK14358 353 VETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAP----RVVGDAAFIAA 428 (481)
T ss_pred EEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCC----cEECCCCEECC
Confidence 43322100 111111111110 011236899999999999999988 99999999999
Q ss_pred CCeEe
Q 030076 177 LVQVG 181 (183)
Q Consensus 177 ~~~v~ 181 (183)
++.|.
T Consensus 429 gs~v~ 433 (481)
T PRK14358 429 GSAVH 433 (481)
T ss_pred CCEEe
Confidence 99874
No 76
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=2.1e-14 Score=115.33 Aligned_cols=106 Identities=22% Similarity=0.307 Sum_probs=68.3
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCce-eeccCCccc---cCCceeceEECC
Q 030076 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF-FVDEHGNML---KKPQLLNARIGN 148 (183)
Q Consensus 73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~-~~~~~~~~~---~~~~~~~~~Ig~ 148 (183)
|++++.||+.+++++++.|++++.||..+.++++.|++++-.+.=+++++...+. .-.-.++.. ....+..++||+
T Consensus 323 vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd 402 (460)
T COG1207 323 VGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGD 402 (460)
T ss_pred ecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecC
Confidence 4556666666677777777777777777777666666654444444444321110 000011111 122445899999
Q ss_pred CCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+++||+++.+-. ++.||+++.|++||+|.+
T Consensus 403 ~vFiGSns~LVA----PV~IGd~a~iaAGStIT~ 432 (460)
T COG1207 403 NVFIGSNSQLVA----PVTIGDGATIAAGSTITK 432 (460)
T ss_pred CcEEccCCcEEe----eEEecCCcEEcccceEcc
Confidence 999999998764 399999999999999964
No 77
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.57 E-value=2.9e-14 Score=115.45 Aligned_cols=132 Identities=23% Similarity=0.337 Sum_probs=79.3
Q ss_pred hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC
Q 030076 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ 93 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~ 93 (183)
.++|.+++++++++.++..++.... ..+. + +.+.+.+.+++.|++++.| +++.|.+++.|+++|.|+ +++|++
T Consensus 215 ~g~w~digt~~dl~~a~~~ll~~~~-~~~~--~--i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~ 287 (353)
T TIGR01208 215 TGWWKDTGKPEDLLDANRLILDEVE-REVQ--G--VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGP 287 (353)
T ss_pred CcEEEeCCCHHHHHHHHHHHHhhcc-cccC--C--cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECC
Confidence 5689999999999988888776321 1111 1 3344455555555555555 455555555555555554 235555
Q ss_pred CcEECCCcEE-----eceEECCCCEECCCc-EECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeE
Q 030076 94 STNIGFNVAL-----SNCIIGDSCIIHNGV-CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167 (183)
Q Consensus 94 ~~~Ig~~~~i-----~~~~I~~~~~Ig~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~ 167 (183)
++.|+++|.| .+++|++++.|+++. .+. ++++++++.|++++.+... ...+
T Consensus 288 ~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~---------------------~~ii~~~~~i~~~~~~~~~--~~~~ 344 (353)
T TIGR01208 288 YTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIV---------------------DSVIGKKVRIKGNRRRPGD--LRLT 344 (353)
T ss_pred CCEECCCCEEeeeEEEeeEEcCCCEEcCCcceee---------------------cCEEcCCCEECCCcccccc--cceE
Confidence 5555555555 455555555555552 443 6888888888888877642 2266
Q ss_pred ECCCCEEC
Q 030076 168 IGDHSKID 175 (183)
Q Consensus 168 Ig~~~~I~ 175 (183)
+|+++.|+
T Consensus 345 ~g~~~~~~ 352 (353)
T TIGR01208 345 IGDYSQVE 352 (353)
T ss_pred EcCCceec
Confidence 77777664
No 78
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.2e-14 Score=116.19 Aligned_cols=134 Identities=25% Similarity=0.317 Sum_probs=82.7
Q ss_pred hhhhhHHHhhhhhhcccchhhhhhhhhcccCC-C-------cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEE
Q 030076 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNG-G-------GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV 85 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-------~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I 85 (183)
.++|.|+++++.++.++..++.......+... . ..+.+++++++++.|+.++.|+++++||++|.|++++.|
T Consensus 215 ~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i 294 (358)
T COG1208 215 EGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI 294 (358)
T ss_pred CCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEE
Confidence 45899999999999888777643211111111 0 344555556666666666666666666666666666666
Q ss_pred CCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076 86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165 (183)
Q Consensus 86 ~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~ 165 (183)
.. ++|+++|.|++++.|.+++|+++|.|++ + . .+++ +.++.++.+.+|
T Consensus 295 ~~-Sii~~~~~i~~~~~i~~sIi~~~~~ig~-----~--------------------~-~i~d-~~~g~~~~i~~g---- 342 (358)
T COG1208 295 KN-SIIMDNVVIGHGSYIGDSIIGENCKIGA-----S--------------------L-IIGD-VVIGINSEILPG---- 342 (358)
T ss_pred Ee-eEEEcCCEECCCCEEeeeEEcCCcEECC-----c--------------------e-eecc-eEecCceEEcCc----
Confidence 43 3666667777777776666666666666 1 2 2666 666667777766
Q ss_pred eEECCCCEECCCCe
Q 030076 166 TVIGDHSKIDNLVQ 179 (183)
Q Consensus 166 ~~Ig~~~~I~~~~~ 179 (183)
+++++++.+.++..
T Consensus 343 ~~~~~~~~~~~~~~ 356 (358)
T COG1208 343 VVVGPGSVVESGEI 356 (358)
T ss_pred eEeCCCccccCccc
Confidence 66666666666554
No 79
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=1.4e-13 Score=115.00 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=31.1
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
++.|++++++|.++++.++ +.||++++|++++.|.
T Consensus 393 ~~~igd~~~ig~~s~i~~~----~~ig~~~~v~~~~~v~ 427 (458)
T PRK14354 393 KTIIGDNAFIGCNSNLVAP----VTVGDNAYIAAGSTIT 427 (458)
T ss_pred CCEECCCcEEccCCEEeCC----cEECCCCEECCCCEEC
Confidence 5788999999999998888 9999999999999885
No 80
>PRK10502 putative acyl transferase; Provisional
Probab=99.55 E-value=6.8e-14 Score=103.30 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=26.6
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||++|+||+++++.+| ++||++++|+++++|.
T Consensus 124 ~i~Igd~~~Ig~~a~I~~G----v~Ig~~~vIga~svV~ 158 (182)
T PRK10502 124 PIVIGEGCWLAADVFVAPG----VTIGSGAVVGARSSVF 158 (182)
T ss_pred CEEEcCCcEEcCCCEEcCC----CEECCCCEECCCCEEe
Confidence 6777777777777777777 7777777777777763
No 81
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.54 E-value=2.8e-13 Score=100.84 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=73.6
Q ss_pred EECCCcEECCCCEE----CCCCEECCCcEECCCcEEe---ceEECCCCEECCCcEECCCCCceeeccCC-----c--ccc
Q 030076 72 VLGANVCIGSGTVV----GPAVTIGQSTNIGFNVALS---NCIIGDSCIIHNGVCIGQDGFGFFVDEHG-----N--MLK 137 (183)
Q Consensus 72 ~ig~~~~I~~~~~I----~~~~~Ig~~~~Ig~~~~i~---~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~-----~--~~~ 137 (183)
.+|+++.++.++.+ .+...||+++.|++++.|. +++||++|.|++++.|.+..++....... . ...
T Consensus 45 ~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~ 124 (192)
T PRK09677 45 NFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMR 124 (192)
T ss_pred EECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhc
Confidence 34444444444444 2345777888888887774 57899999999999888644332211100 0 011
Q ss_pred CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
.....++.||++++|++++++.++ ++||++|+|+++++|.+
T Consensus 125 ~~~~~~v~Ig~~~~ig~~~~i~~g----~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 125 TLESSAVVIGQRVWIGENVTILPG----VSIGNGCIVGANSVVTK 165 (192)
T ss_pred ccccCCeEEcCCcEECCCCEEcCC----CEECCCCEECCCCEECc
Confidence 223458999999999999999988 99999999999999853
No 82
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.54 E-value=3.3e-13 Score=113.56 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.8
Q ss_pred eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.+++||++++||.++++.++ ++||++++|+++++|.
T Consensus 398 ~~~~IGd~~~iG~~~~i~~~----~~Ig~~~~igags~v~ 433 (482)
T PRK14352 398 HRTTIGSHVRTGSDTMFVAP----VTVGDGAYTGAGTVIR 433 (482)
T ss_pred CCCeECCCcEECCCCEEeCC----CEECCCcEECCCCEEc
Confidence 36889999999999999988 9999999999999874
No 83
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.54 E-value=1.7e-13 Score=102.02 Aligned_cols=68 Identities=31% Similarity=0.584 Sum_probs=31.0
Q ss_pred ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEEC
Q 030076 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~ 121 (183)
.+++.++++|++++.|++.+.|++++.|+++|.|++++.|++. .|++++.|. ++.+ +++.|++++.|+
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i-~~~~ig~~~~Ig 77 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVI-EGAVIGNGATVG 77 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEE-EeeEECCCCEEC
Confidence 3445555555555555555555544444444444444444432 444444442 2223 234444444444
No 84
>PRK10502 putative acyl transferase; Provisional
Probab=99.53 E-value=5.6e-13 Score=98.41 Aligned_cols=92 Identities=23% Similarity=0.328 Sum_probs=66.7
Q ss_pred EECCCcEECCCcEEcc--CcEECCCcEECCCCEEC--CCCEECCCcEECCCcEE----------------eceEECCCCE
Q 030076 54 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVAL----------------SNCIIGDSCI 113 (183)
Q Consensus 54 ~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i----------------~~~~I~~~~~ 113 (183)
.+++++.|.+++.|.. ++.||+++.|++++.|. ..++||++|.|++++.| .+++|+++|+
T Consensus 53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~ 132 (182)
T PRK10502 53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCW 132 (182)
T ss_pred ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcE
Confidence 3344444444444332 46677777777777775 35678888888888776 2468999999
Q ss_pred ECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076 114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165 (183)
Q Consensus 114 Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~ 165 (183)
|++++.|.+ ++.||+++.|++++++.+..+++
T Consensus 133 Ig~~a~I~~--------------------Gv~Ig~~~vIga~svV~~~v~~~ 164 (182)
T PRK10502 133 LAADVFVAP--------------------GVTIGSGAVVGARSSVFKSLPAN 164 (182)
T ss_pred EcCCCEEcC--------------------CCEECCCCEECCCCEEecccCCC
Confidence 999999987 89999999999999998775433
No 85
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.53 E-value=4.3e-14 Score=117.50 Aligned_cols=92 Identities=10% Similarity=0.190 Sum_probs=49.7
Q ss_pred hhhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076 13 TKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG 92 (183)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig 92 (183)
+.++|.+++++..|+.+++.++.......+......+.......+++.+ .++.|.+ ++|+++|.|+ ++.|+ +++|+
T Consensus 260 ~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~-~svI~ 335 (436)
T PLN02241 260 FDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIE-HSVVG 335 (436)
T ss_pred eCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEE-eeEEc
Confidence 3578999999999998888877543222222222222221222233333 2344433 5556666665 55554 33666
Q ss_pred CCcEECCCcEEeceEE
Q 030076 93 QSTNIGFNVALSNCII 108 (183)
Q Consensus 93 ~~~~Ig~~~~i~~~~I 108 (183)
++|.|+++|.|.++++
T Consensus 336 ~~~~Ig~~~~I~~sii 351 (436)
T PLN02241 336 LRSRIGEGVEIEDTVM 351 (436)
T ss_pred CCCEECCCCEEEEeEE
Confidence 6666666666655554
No 86
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.53 E-value=2.6e-13 Score=113.33 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=74.5
Q ss_pred cEEccceEECCCcEECCCcEEccCc-----EECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEE
Q 030076 47 GIFHQSACIDSTVLIEVGAIVHSKA-----VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCI 120 (183)
Q Consensus 47 ~~i~~~~~i~~~~~i~~~~~i~~~~-----~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i 120 (183)
..+.+++.+.+++.|++++.|++++ +|+++|.|++++.| .+++|+++|.|++++.|. +++|++++.|++++.+
T Consensus 276 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i-~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 276 AEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHL-EGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred CEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEE-cccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 3333333333344555555555544 34555555555555 244667777777777664 5666666666655444
Q ss_pred CCCC------------CceeeccCCcccc---------CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCe
Q 030076 121 GQDG------------FGFFVDEHGNMLK---------KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQ 179 (183)
Q Consensus 121 ~~~~------------~~~~~~~~~~~~~---------~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~ 179 (183)
.+.- ++.....+..... .....++.||+++++|.++.+.++ ++||++++|+++++
T Consensus 355 ~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~----~~ig~~~~i~~~~~ 430 (456)
T PRK14356 355 KKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP----VTIGDGALVGAGSV 430 (456)
T ss_pred eeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC----cEECCCCEEcCCCE
Confidence 2210 0000111111000 011246899999999999999988 99999999999998
Q ss_pred Ee
Q 030076 180 VG 181 (183)
Q Consensus 180 v~ 181 (183)
|.
T Consensus 431 v~ 432 (456)
T PRK14356 431 IT 432 (456)
T ss_pred Ee
Confidence 84
No 87
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.53 E-value=2.7e-13 Score=113.06 Aligned_cols=126 Identities=27% Similarity=0.382 Sum_probs=65.6
Q ss_pred ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC---------------CCEECCCcEECCCcEEe-ceEECCCCE
Q 030076 50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---------------AVTIGQSTNIGFNVALS-NCIIGDSCI 113 (183)
Q Consensus 50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---------------~~~Ig~~~~Ig~~~~i~-~~~I~~~~~ 113 (183)
.+++.+++++.|++++.|.+++.||+++.|++++.|+. +++|++++.|+++|.|. +++|+++|.
T Consensus 260 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 260 SETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred eCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceE
Confidence 33344444444444444444445555555555554431 23445555555555553 455555555
Q ss_pred ECCCcEECCCCCceeeccCCccc-cCCceeceEECCCCEECCCcEEcCC--C-CCCeEECCCCEECCCCeE
Q 030076 114 IHNGVCIGQDGFGFFVDEHGNML-KKPQLLNARIGNHVEIGANSCIDRG--S-WRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 114 Ig~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~v~~g--~-~~~~~Ig~~~~I~~~~~v 180 (183)
|++++.+.+. ...+.... +....+.+.|+++|.||+++++... . .+.++||+++.|+++++|
T Consensus 340 Ig~~~~i~~~-----~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i 405 (450)
T PRK14360 340 IGNFVEIKKS-----QLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL 405 (450)
T ss_pred ECCCEEEecc-----ccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence 5555555421 11122211 2223457889999999998877431 1 234666666666666655
No 88
>PLN02694 serine O-acetyltransferase
Probab=99.52 E-value=3.5e-13 Score=104.72 Aligned_cols=98 Identities=28% Similarity=0.388 Sum_probs=67.3
Q ss_pred eEECCCcEECCCcEEcc--CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeec
Q 030076 53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD 130 (183)
Q Consensus 53 ~~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~ 130 (183)
..|++.+.|++++.|.. +++||+++.||++|.|..+++++.. +..+...+++|+++|+||+++.|..
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilg-------- 229 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILG-------- 229 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECC--------
Confidence 34444455555544443 5566666666666666555555542 3445567889999999999999976
Q ss_pred cCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCE
Q 030076 131 EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSK 173 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~ 173 (183)
++.||+++.|+++++|.+.++ ..++.|..+.
T Consensus 230 ------------gi~IGd~a~IGAgSVV~kdVP~~~~v~G~PAk 261 (294)
T PLN02694 230 ------------NVKIGEGAKIGAGSVVLIDVPPRTTAVGNPAR 261 (294)
T ss_pred ------------CCEECCCCEECCCCEECCcCCCCcEEEccCcE
Confidence 899999999999999998873 4455555443
No 89
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.52 E-value=2.4e-13 Score=87.14 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=44.0
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECC
Q 030076 75 ANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154 (183)
Q Consensus 75 ~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~ 154 (183)
+++.|++++.|+++++|+++|.|++++.|.++++++++.|++++.+. ++++++++.+++
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~---------------------~sii~~~~~v~~ 62 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVK---------------------SSIVGWNSTVGR 62 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEe---------------------CCEEeCCCEECC
Confidence 34444444444444555555666666666666666666666666665 556666666666
Q ss_pred CcEEcCCCCCCeEECCCCEEC
Q 030076 155 NSCIDRGSWRDTVIGDHSKID 175 (183)
Q Consensus 155 ~~~v~~g~~~~~~Ig~~~~I~ 175 (183)
++.+..+ ++||+++.|+
T Consensus 63 ~~~~~~~----~~ig~~~~i~ 79 (80)
T cd05824 63 WTRLENV----TVLGDDVTIK 79 (80)
T ss_pred CcEEecC----EEECCceEEC
Confidence 6666554 5555555554
No 90
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.52 E-value=1e-13 Score=105.32 Aligned_cols=107 Identities=26% Similarity=0.331 Sum_probs=71.7
Q ss_pred cEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076 59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 137 (183)
Q Consensus 59 ~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~ 137 (183)
++|.+++++..+++|++++.+.+.++|.-++.++..+.|.-++.+. .++||++|+|+.++.|.. .+.
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G------------VLe 176 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG------------VLE 176 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE------------Eec
Confidence 4555555555555555555555555555555556666665555553 356888888888888864 122
Q ss_pred CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
..+..+++||+||.||+++++..| +.+|++|+|++|++|+
T Consensus 177 p~~a~Pv~IgdncliGAns~~veG----V~vGdg~VV~aGv~I~ 216 (271)
T COG2171 177 PLQANPVIIGDNCLIGANSEVVEG----VIVGDGCVVAAGVFIT 216 (271)
T ss_pred CCCCCCeEECCccEeccccceEee----eEeCCCcEEecceEEe
Confidence 233448888888888888877777 8888888888888875
No 91
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.51 E-value=7e-14 Score=115.28 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=84.1
Q ss_pred hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEE-CCC--cEEccCcEECCCcEECCCCEECCCCE
Q 030076 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI-EVG--AIVHSKAVLGANVCIGSGTVVGPAVT 90 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~--~~i~~~~~ig~~~~I~~~~~I~~~~~ 90 (183)
.++|.|+++.+.|+.+++.++.......+......+.......+++.+ ... ..+.++++|+++|.|+ ++.|+ +++
T Consensus 256 ~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~sv 333 (407)
T PRK00844 256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSV 333 (407)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCE
Confidence 478999999999999988887543222222221112211111222222 111 1234567888888887 78776 468
Q ss_pred ECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcC
Q 030076 91 IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160 (183)
Q Consensus 91 Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 160 (183)
|+++|.|+++|.|.+++|+++|.|++++.|. .++|++++.|++++++..
T Consensus 334 Ig~~~~I~~~~~i~~sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 334 LSPNVVVESGAEVEDSVLMDGVRIGRGAVVR---------------------RAILDKNVVVPPGATIGV 382 (407)
T ss_pred ECCCCEECCCCEEeeeEECCCCEECCCCEEE---------------------eeEECCCCEECCCCEECC
Confidence 8888888888888888888888888888887 688888888888887765
No 92
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.51 E-value=2.6e-13 Score=98.87 Aligned_cols=105 Identities=27% Similarity=0.341 Sum_probs=71.7
Q ss_pred CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (183)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~ 123 (183)
..+..|+|.+.|+++.+|+++. +++||+.+.||++|.|..+++||.. --..+ -++..|+++++||+++.|..
T Consensus 65 ~~gieIhp~A~IG~g~fIdHg~----GvVIgeta~IGddv~I~~gVTLGgt-g~~~g--~RhPtIg~~V~IGagAkILG- 136 (194)
T COG1045 65 LFGIEIHPGAKIGRGLFIDHGT----GVVIGETAVIGDDVTIYHGVTLGGT-GKESG--KRHPTIGNGVYIGAGAKILG- 136 (194)
T ss_pred hcceeeCCCCeECCceEEcCCc----eEEEcceeEECCCeEEEcceEecCC-CCcCC--CCCCccCCCeEECCCCEEEc-
Confidence 3455577777777777776653 4455555555555555555455431 11111 35689999999999999976
Q ss_pred CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEEC
Q 030076 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKID 175 (183)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I~ 175 (183)
+..||+|+.||+|++|.+.+ .+.+++|-.+.+-
T Consensus 137 -------------------~I~IGd~akIGA~sVVlkdVP~~~tvvGvPArii 170 (194)
T COG1045 137 -------------------NIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVI 170 (194)
T ss_pred -------------------ceEECCCCEECCCceEccCCCCCceEecCcceEe
Confidence 89999999999999999987 4456666665543
No 93
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.51 E-value=2.7e-13 Score=86.57 Aligned_cols=77 Identities=27% Similarity=0.474 Sum_probs=44.4
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEE
Q 030076 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (183)
Q Consensus 73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (183)
|++++.|++++.|.+ +.|+++|.|++++.|.+++|++++.|++++.+. +++|++++.|
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------------------~svv~~~~~i 59 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIV---------------------DSIIGDNAVI 59 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEE---------------------CCEECCCCEE
Confidence 344455555555543 455666666666666666666666666666665 4556666666
Q ss_pred CCCcEEcCCCCCCeEECCCCEEC
Q 030076 153 GANSCIDRGSWRDTVIGDHSKID 175 (183)
Q Consensus 153 g~~~~v~~g~~~~~~Ig~~~~I~ 175 (183)
++++.+..+ +++++++.|+
T Consensus 60 ~~~~~i~~~----~~ig~~~~i~ 78 (79)
T cd03356 60 GENVRVVNL----CIIGDDVVVE 78 (79)
T ss_pred CCCCEEcCC----eEECCCeEEC
Confidence 666666544 5555555554
No 94
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.51 E-value=6.6e-13 Score=96.20 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=29.6
Q ss_pred cEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-------------ceEECCCCEECCCcEEC
Q 030076 71 AVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-------------NCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 71 ~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~Ig~~~~i~ 121 (183)
+.|++++.|++++.|.+. ++||++|.|+++|.|. +++|++++.|++++.+.
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~ 88 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN 88 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE
Confidence 344444444444444432 3555555555555553 35788888888888876
No 95
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.50 E-value=3.2e-13 Score=112.94 Aligned_cols=62 Identities=24% Similarity=0.476 Sum_probs=46.4
Q ss_pred EECCCc-EEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 60 LIEVGA-IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 60 ~i~~~~-~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
.+++.+ .|++++.|++++.|++++.|+++++||++|.|+++|.|.+++|+++|.|++++.+.
T Consensus 257 ~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 319 (459)
T PRK14355 257 LIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLE 319 (459)
T ss_pred EECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEe
Confidence 344442 46667777777777777777777788888888888888888888888888888775
No 96
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.50 E-value=3.7e-13 Score=85.81 Aligned_cols=77 Identities=30% Similarity=0.473 Sum_probs=50.2
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEE
Q 030076 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (183)
Q Consensus 73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (183)
|++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|++++.+. .++|++++.|
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~---------------------~~~i~~~~~i 59 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH---------------------HSIVADGAVI 59 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------CcEEcCCCEE
Confidence 45556666666664 3567777777777777777777777777777775 5666666666
Q ss_pred CCCcEEcCCCCCCeEECCCCEEC
Q 030076 153 GANSCIDRGSWRDTVIGDHSKID 175 (183)
Q Consensus 153 g~~~~v~~g~~~~~~Ig~~~~I~ 175 (183)
++++.+..+ ++|++++.|+
T Consensus 60 ~~~~~i~~~----~~v~~~~~ig 78 (79)
T cd05787 60 GKGCTIPPG----SLISFGVVIG 78 (79)
T ss_pred CCCCEECCC----CEEeCCcEeC
Confidence 666666555 5555555554
No 97
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.49 E-value=4.7e-13 Score=85.97 Aligned_cols=47 Identities=32% Similarity=0.595 Sum_probs=22.3
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 74 g~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
++++.|++++.|+ ++.|+++|.|++++.|.+++|++++.|++++.+.
T Consensus 3 g~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~ 49 (81)
T cd04652 3 GENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLE 49 (81)
T ss_pred cCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEe
Confidence 3344444444443 2344455555555555455555555555555553
No 98
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.49 E-value=3.4e-13 Score=104.59 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=40.6
Q ss_pred ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEE
Q 030076 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKI 174 (183)
Q Consensus 105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I 174 (183)
+++|+++|+||+++.|.. ++.||+++.||++++|.+.+ ...++.|..+.+
T Consensus 193 ~p~IGd~V~IGaga~Ilg--------------------gv~IG~~a~IGAgSvV~~dVp~~~~v~G~PArv 243 (273)
T PRK11132 193 HPKIREGVMIGAGAKILG--------------------NIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARI 243 (273)
T ss_pred CCEECCCcEEcCCCEEcC--------------------CCEECCCCEECCCCEECcccCCCcEEEecCcEE
Confidence 578999999999999987 89999999999999998877 344555655553
No 99
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.49 E-value=1.2e-13 Score=114.60 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=92.6
Q ss_pred hhhhhHHHhhhhhhcccchhh-hhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076 14 KTYKQDFGRFCNLFSTKSDIE-SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG 92 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig 92 (183)
.++|.++++++.|+.++..++ ..............++....+.+++.+. ++.+. +++|+++|.| +++.|+ +++|+
T Consensus 253 ~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~-~svi~ 328 (429)
T PRK02862 253 DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIH-HSVLG 328 (429)
T ss_pred CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEE-EEEEe
Confidence 578999999999998887776 2222111222222222233344444442 45553 4788888888 777775 45888
Q ss_pred CCcEECCCcEEeceEECC-------------------CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEEC
Q 030076 93 QSTNIGFNVALSNCIIGD-------------------SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 153 (183)
Q Consensus 93 ~~~~Ig~~~~i~~~~I~~-------------------~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig 153 (183)
++|.|+++|.|.+++|+. ++.|++++.|. .++|++++.||
T Consensus 329 ~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~---------------------~~ii~~~~~i~ 387 (429)
T PRK02862 329 IRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIK---------------------RAIIDKNARIG 387 (429)
T ss_pred CCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEE---------------------EEEECCCcEEC
Confidence 888888888888888765 57788888886 78888888888
Q ss_pred CCcEEcCCC--------CCCeEECCC-CEECCCCeE
Q 030076 154 ANSCIDRGS--------WRDTVIGDH-SKIDNLVQV 180 (183)
Q Consensus 154 ~~~~v~~g~--------~~~~~Ig~~-~~I~~~~~v 180 (183)
+++.+..+. .++++|+++ ++|+.++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 388 NNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred CCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 888775332 134566665 556655554
No 100
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.49 E-value=6.2e-13 Score=111.14 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=48.2
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~ 122 (183)
.+++++.|++++.|++++.|.+++.||++|.|++++.|. +++|+++|.|++ +.+.+++|+++|.|++++.|.+
T Consensus 261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~ 333 (458)
T PRK14354 261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRP 333 (458)
T ss_pred EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEeCCEECCCcEECCceEecC
Confidence 344455555555555555555566666666666666664 347777777773 5667788888888888887775
No 101
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.48 E-value=8.3e-13 Score=98.73 Aligned_cols=35 Identities=40% Similarity=0.504 Sum_probs=27.1
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++||++||||+++++.+| ++||++++|+++++|.
T Consensus 131 pi~IGd~v~IG~~~~I~~g----v~IG~~~vIgagsvV~ 165 (203)
T PRK09527 131 PITIGNNVWIGSHVVINPG----VTIGDNSVIGAGSVVT 165 (203)
T ss_pred CeEECCCcEECCCCEEcCC----CEECCCCEECCCCEEc
Confidence 6778888888888877777 7777777777777774
No 102
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.48 E-value=8.6e-13 Score=84.73 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=66.3
Q ss_pred ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (183)
Q Consensus 55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~ 134 (183)
|++++.|++++.|. ++.|++++.|++++.|++ ++|++++.|++++.|.++++++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~-s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~------------- 66 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK------------- 66 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-------------
Confidence 45566666666665 578888888888999865 689999999999999999999999999999997
Q ss_pred cccCCceeceEECCCCEECCCc
Q 030076 135 MLKKPQLLNARIGNHVEIGANS 156 (183)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~Ig~~~ 156 (183)
++++++++.|++++
T Consensus 67 --------~~ii~~~~~i~~~~ 80 (81)
T cd04652 67 --------DCLVGSGYRVEAGT 80 (81)
T ss_pred --------cCEECCCcEeCCCC
Confidence 78888888887764
No 103
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.48 E-value=6.7e-13 Score=96.23 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=35.7
Q ss_pred eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC
Q 030076 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164 (183)
Q Consensus 104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~ 164 (183)
..++|+++|+|++++.|.. +++||++++|+++++|.+++++
T Consensus 112 ~~~~Ig~~v~Ig~~a~I~~--------------------~v~IG~~~~Iga~s~V~~dvp~ 152 (162)
T TIGR01172 112 RHPTVGEGVMIGAGAKVLG--------------------NIEVGENAKIGANSVVLKDVPP 152 (162)
T ss_pred cCCEECCCcEEcCCCEEEC--------------------CcEECCCCEECCCCEECCCCCC
Confidence 3568999999999999987 8999999999999999988533
No 104
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.47 E-value=9e-13 Score=102.76 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=25.8
Q ss_pred eEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 144 ~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
+.||++|+||+|+.+ | ..||++|+|++|++|
T Consensus 251 V~IGe~~lIGagA~I--G----I~IGd~~iIGAGavV 281 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--G----IPLGDRCTVEAGLYI 281 (341)
T ss_pred EEECCCcEECCCCEE--e----eEECCCCEECCCCEE
Confidence 888888888888888 5 788888888888877
No 105
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=1.1e-12 Score=84.07 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=67.1
Q ss_pred ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (183)
Q Consensus 55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~ 134 (183)
+++++.|++++.|++++.|+++|.|++++.|. ++++++++.|++++.|.++++++++.+++++.+..
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~------------ 68 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN------------ 68 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec------------
Confidence 45667777778888888889999999999996 45999999999999999999999999999999975
Q ss_pred cccCCceeceEECCCCEEC
Q 030076 135 MLKKPQLLNARIGNHVEIG 153 (183)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~Ig 153 (183)
++++++++.++
T Consensus 69 --------~~~ig~~~~i~ 79 (80)
T cd05824 69 --------VTVLGDDVTIK 79 (80)
T ss_pred --------CEEECCceEEC
Confidence 57888888776
No 106
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.46 E-value=3.6e-13 Score=109.73 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=96.3
Q ss_pred hhhhhhHHHhhhhhhcccchhhhhhhhhccc-CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE
Q 030076 13 TKTYKQDFGRFCNLFSTKSDIESRQQFQKWH-NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI 91 (183)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I 91 (183)
..++|.|++++..++.++..++........+ .....+.....+.+++.|++++.| ++++||++|.|+ +.|. +++|
T Consensus 232 ~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~-~s~i 307 (369)
T TIGR02092 232 YTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVE-NSIL 307 (369)
T ss_pred cCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEe-CCEE
Confidence 3578999999999998887777553322222 111112222224467777777777 677888888885 3454 4599
Q ss_pred CCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECC
Q 030076 92 GQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170 (183)
Q Consensus 92 g~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~ 170 (183)
+++|.|+++|.|.+++|++++.|++++.+. +++|++++.|++++.+........++.+
T Consensus 308 ~~~~~I~~~~~i~~sii~~~~~I~~~~~i~---------------------~~ii~~~~~v~~~~~~~~~~~~~~~~~~ 365 (369)
T TIGR02092 308 SRGVHVGKDALIKNCIIMQRTVIGEGAHLE---------------------NVIIDKDVVIEPNVKIAGTSEQPLVISK 365 (369)
T ss_pred CCCCEECCCCEEEeeEEeCCCEECCCCEEE---------------------EEEECCCCEECCCCEeCCCCCccEEEec
Confidence 999999999999999999999999999997 7999999999999988654333344433
No 107
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=1.2e-12 Score=83.56 Aligned_cols=77 Identities=30% Similarity=0.497 Sum_probs=65.4
Q ss_pred ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (183)
Q Consensus 55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~ 134 (183)
|++++.|++++.|.+ +.|+++|.|++++.|.+ ++|++++.|++++.|.+++|++++.|++++.+.+
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~-svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~------------ 67 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITN-SILMDNVTIGANSVIVDSIIGDNAVIGENVRVVN------------ 67 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEeC-CEEeCCCEECCCCEEECCEECCCCEECCCCEEcC------------
Confidence 566777777777766 88899999999999964 5999999999999999999999999999999985
Q ss_pred cccCCceeceEECCCCEEC
Q 030076 135 MLKKPQLLNARIGNHVEIG 153 (183)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~Ig 153 (183)
++++++++.++
T Consensus 68 --------~~~ig~~~~i~ 78 (79)
T cd03356 68 --------LCIIGDDVVVE 78 (79)
T ss_pred --------CeEECCCeEEC
Confidence 57888887776
No 108
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.46 E-value=4.7e-13 Score=111.54 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=37.6
Q ss_pred cEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 65 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 65 ~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
+.+.+.+.||+++.|++++.|.++++||++|.|+++|.|.+++|+++|.|++++.+.
T Consensus 256 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~ 312 (451)
T TIGR01173 256 FDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLE 312 (451)
T ss_pred EEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEe
Confidence 344555566666666666666666667777777777777777777777777666665
No 109
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.46 E-value=3.7e-12 Score=95.21 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=69.8
Q ss_pred EccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceE
Q 030076 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCI 107 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~ 107 (183)
++++++|.+++.+. .+.++.||+++.|..++.|. ..+.||++|.|+++|.|. .++
T Consensus 58 ig~~~~I~~~~~~~----~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~ 133 (203)
T PRK09527 58 VGENAWVEPPVYFS----YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT 133 (203)
T ss_pred cCCCcEEcCCEEEe----eCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeE
Confidence 55555666555542 12345556666666666552 246777777777777773 278
Q ss_pred ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCCE
Q 030076 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHSK 173 (183)
Q Consensus 108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~~ 173 (183)
|+++|+||.++.|.+ ++.||++++|+++++|.+..++ ....|..|.
T Consensus 134 IGd~v~IG~~~~I~~--------------------gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk 180 (203)
T PRK09527 134 IGNNVWIGSHVVINP--------------------GVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCR 180 (203)
T ss_pred ECCCcEECCCCEEcC--------------------CCEECCCCEECCCCEEcccCCCCcEEEeeCCE
Confidence 999999999999987 8999999999999999877533 344444443
No 110
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.46 E-value=4.2e-12 Score=94.53 Aligned_cols=90 Identities=27% Similarity=0.363 Sum_probs=69.1
Q ss_pred eEECCCcEECCCcEE----ccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe----------------------
Q 030076 53 ACIDSTVLIEVGAIV----HSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS---------------------- 104 (183)
Q Consensus 53 ~~i~~~~~i~~~~~i----~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~---------------------- 104 (183)
..+++++.++.++++ .+...||+++.|++++.|. ++++||++|.|++++.|.
T Consensus 44 I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~ 123 (192)
T PRK09677 44 INFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDM 123 (192)
T ss_pred EEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhh
Confidence 345566666666665 3456778888888888776 467888888888888774
Q ss_pred ------ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 105 ------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 105 ------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
+++|+++|+|++++.|.+ ++.||++++|++++++.+..
T Consensus 124 ~~~~~~~v~Ig~~~~ig~~~~i~~--------------------g~~Ig~~~~Iga~s~v~~~i 167 (192)
T PRK09677 124 RTLESSAVVIGQRVWIGENVTILP--------------------GVSIGNGCIVGANSVVTKSI 167 (192)
T ss_pred cccccCCeEEcCCcEECCCCEEcC--------------------CCEECCCCEECCCCEECccc
Confidence 257899999999999887 89999999999999998654
No 111
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.46 E-value=1.6e-12 Score=101.32 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=79.5
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcE-ECCCCE---ECCCCEECCCcEECCCcEEe-----c----eEE
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVC-IGSGTV---VGPAVTIGQSTNIGFNVALS-----N----CII 108 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-I~~~~~---I~~~~~Ig~~~~Ig~~~~i~-----~----~~I 108 (183)
....+..|.+.++|..++.+++|+.|.++++|+.++. +|.+++ |..+++|+++|.||.+|.|. + +.|
T Consensus 174 Vvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~I 253 (341)
T TIGR03536 174 VVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISV 253 (341)
T ss_pred EccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEE
Confidence 3456778888888888888888888888888888888 777777 66778888888888888882 3 678
Q ss_pred CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
|++|+||.++.| ++.||++|.|++|+.|..+
T Consensus 254 Ge~~lIGagA~I----------------------GI~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 254 GEGCLLGANAGI----------------------GIPLGDRCTVEAGLYITAG 284 (341)
T ss_pred CCCcEECCCCEE----------------------eeEECCCCEECCCCEEeCC
Confidence 888888888887 5788888888888888877
No 112
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.46 E-value=2.4e-12 Score=93.95 Aligned_cols=34 Identities=38% Similarity=0.429 Sum_probs=18.4
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
++.||++|||+++++|.++ ++||++|+|+++++|
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g----v~Ig~~~~VgagavV 151 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG----VTIGDNSVIGAGSVV 151 (169)
T ss_pred CcEeCCCEEECCCCEEeCC----CEECCCCEECCCCEE
Confidence 4555555555555555544 555555555555554
No 113
>PRK10191 putative acyl transferase; Provisional
Probab=99.46 E-value=1.9e-12 Score=91.95 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=64.5
Q ss_pred EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCcee
Q 030076 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 128 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~ 128 (183)
|.+.+.+++++.|+++ .++.|++++.||+++.|+.+++||+...... ..+.|+++|+|++++.+.+
T Consensus 44 I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~----~~~~IGd~~~Ig~~~~I~~------ 109 (146)
T PRK10191 44 IQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGADNM----ACPHIGNGVELGANVIILG------ 109 (146)
T ss_pred cCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCcCCC----CCCEECCCcEEcCCCEEeC------
Confidence 4444555555555543 1445555555555555555555554433222 2358999999999999987
Q ss_pred eccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEE
Q 030076 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKI 174 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I 174 (183)
++.||++++|++++++.+.. ...+++|..+.+
T Consensus 110 --------------~v~IG~~~~Igags~V~~dv~~~~~v~G~pA~~ 142 (146)
T PRK10191 110 --------------DITIGNNVTVGAGSVVLDSVPDNALVVGEKARV 142 (146)
T ss_pred --------------CCEECCCCEECCCCEECCccCCCcEEEccCcEE
Confidence 89999999999999998876 344566665543
No 114
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.45 E-value=1.9e-12 Score=100.46 Aligned_cols=104 Identities=24% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCcEECCCcEEccCcEECCCcEECCCCEECCCC-EECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076 57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (183)
Q Consensus 57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~-~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~ 134 (183)
.+++|.++.++.-+++|++++.|.++++|..++ +||+. .| ++.| ..++||++|.|++++.|...
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~----------- 217 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGT----------- 217 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecce-----------
Confidence 455666666666666777777777777776666 56664 55 3555 34678888888888885531
Q ss_pred cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 135 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+......++.||++|+||+|+.| | ..||++|+|++|++|.
T Consensus 218 -LsGg~~~pV~IGe~~~IGagA~I--G----I~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 218 -LSGGGKEVISIGERCLLGANSGL--G----ISLGDDCVVEAGLYVT 257 (319)
T ss_pred -ecCCCcccEEECCCcEECCCCEE--C----eEECCCCEECCCCEEe
Confidence 00011125999999999999999 5 8999999999999884
No 115
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.45 E-value=9e-13 Score=109.89 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=38.8
Q ss_pred EECCCcEECCCcEEccCcEECCCcEECCCCEECCC-----CEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076 54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~-----~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~ 122 (183)
++++++.|++++.|++++.|++++.||++|.|+++ ++|+++|.|. .+.+.+++|++++.|++++.+.+
T Consensus 251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~ 323 (448)
T PRK14357 251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLRE 323 (448)
T ss_pred EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECC
Confidence 55555555555555555544444444444444444 3556666553 33456777777777777777754
No 116
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=2.8e-12 Score=85.73 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=64.9
Q ss_pred ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeecc
Q 030076 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131 (183)
Q Consensus 52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~ 131 (183)
+.++++.+.|.+++.+.++++|++++.|++++.|++.++||++|.|+. .|.+++|++++.+.+++.++
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg---------- 78 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG---------- 78 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe----------
Confidence 356677777777777777778888888888888877778888888864 56778888888888888876
Q ss_pred CCccccCCceeceEECCCCEECCCcEE
Q 030076 132 HGNMLKKPQLLNARIGNHVEIGANSCI 158 (183)
Q Consensus 132 ~~~~~~~~~~~~~~Ig~~~~Ig~~~~v 158 (183)
.++||+++.|++++..
T Consensus 79 -----------~siIg~~v~ig~~~~~ 94 (101)
T cd05635 79 -----------HSYLGSWCNLGAGTNN 94 (101)
T ss_pred -----------eeEECCCCEECCCcee
Confidence 6888888888888765
No 117
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.44 E-value=2.1e-12 Score=95.27 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=27.6
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
++.||++||||+++++.++ ++||++++|+++++|.+
T Consensus 129 ~v~IGd~v~IG~~a~I~~g----v~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPG----VTIGDNVVVASGAVVTK 164 (183)
T ss_pred CeEECCCcEECCCCEECCC----CEECCCCEECCCCEEcc
Confidence 6778888888888888777 77888888887777743
No 118
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.43 E-value=2.1e-12 Score=82.22 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=64.1
Q ss_pred ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (183)
Q Consensus 55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~ 134 (183)
|++++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.|.+++|++++.|++++.+.+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~------------ 67 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP------------ 67 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECC------------
Confidence 46667777777775 57888999999999986 56999999999999999999999999999888876
Q ss_pred cccCCceeceEECCCCEECC
Q 030076 135 MLKKPQLLNARIGNHVEIGA 154 (183)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~Ig~ 154 (183)
++++++++.||+
T Consensus 68 --------~~~v~~~~~ig~ 79 (79)
T cd05787 68 --------GSLISFGVVIGD 79 (79)
T ss_pred --------CCEEeCCcEeCc
Confidence 677777777763
No 119
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.7e-13 Score=111.20 Aligned_cols=92 Identities=27% Similarity=0.385 Sum_probs=77.1
Q ss_pred EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCce
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 127 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~ 127 (183)
.++.+..|+.++.|+.++.| .|++||.+|.||++++|.+. .|+++|.||.+|+|.+++|++++.|+.++.+.+
T Consensus 329 ~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S-~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~----- 401 (673)
T KOG1461|consen 329 IVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNS-FIWNNVTIGDNCRIDHAIICDDVKIGEGAILKP----- 401 (673)
T ss_pred cccceEEecccccccCCCee-ecceecCCCEecCceEEeee-eeecCcEECCCceEeeeEeecCcEeCCCcccCC-----
Confidence 34445555666666666666 48899999999999999654 999999999999999999999999999999987
Q ss_pred eeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
+++++.++++|++-++.++
T Consensus 402 ---------------g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 402 ---------------GSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ---------------CcEEeeeeEeCCCcccccc
Confidence 8888888888888888766
No 120
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.42 E-value=7.6e-12 Score=93.91 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=56.4
Q ss_pred eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe----------------------------
Q 030076 53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------------------------- 104 (183)
Q Consensus 53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------------------------- 104 (183)
+.|++++.|++++.|. ++.||.++.|++++.+. ++.||++|.|++++.|.
T Consensus 20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~-~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~ 97 (204)
T TIGR03308 20 SKLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD 97 (204)
T ss_pred cEeCCCcEECCCcEEe-CCEECCCCEECCCcEEe-eeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence 3444444455544443 45666677777776664 35788888888888773
Q ss_pred ----------ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 105 ----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
+++|+++++||.++.|.+ ++.||+++.|+++++|.+..
T Consensus 98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~--------------------gv~Ig~~~~I~~gs~v~~~i 145 (204)
T TIGR03308 98 ADFFAWRRAKRVTIGHDVWIGHGAVILP--------------------GVTIGNGAVIAAGAVVTKDV 145 (204)
T ss_pred ccccccccCCCeEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEECCCC
Confidence 445666666666666665 67777777777777776554
No 121
>PLN02357 serine acetyltransferase
Probab=99.42 E-value=4.7e-12 Score=101.04 Aligned_cols=97 Identities=28% Similarity=0.457 Sum_probs=61.7
Q ss_pred ECCCcEECCCcEEcc--CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccC
Q 030076 55 IDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH 132 (183)
Q Consensus 55 i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~ 132 (183)
|++++.|++++.|.. +++||+++.||+++.|..+++||.. +......+++||++|+||+++.|..
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~Ilg---------- 295 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILG---------- 295 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEEC----------
Confidence 344444444444432 3455555555555555444444432 1112234688999999999999976
Q ss_pred CccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEE
Q 030076 133 GNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKI 174 (183)
Q Consensus 133 ~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I 174 (183)
++.||+++.||++++|.+++ ...+++|..+.+
T Consensus 296 ----------gV~IGdga~IGAgSVV~~dVP~~~~v~G~PArv 328 (360)
T PLN02357 296 ----------NITIGEGAKIGAGSVVLKDVPPRTTAVGNPARL 328 (360)
T ss_pred ----------CeEECCCCEECCCCEECcccCCCcEEECCCeEE
Confidence 89999999999999999887 445666766654
No 122
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.42 E-value=1.6e-12 Score=98.95 Aligned_cols=100 Identities=21% Similarity=0.339 Sum_probs=72.6
Q ss_pred CcEEccceEECCCcEECCCcEEcc------CcEECCCcEECCCCEECCCCEECCCcEECCCcEE---------eceEECC
Q 030076 46 GGIFHQSACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL---------SNCIIGD 110 (183)
Q Consensus 46 ~~~i~~~~~i~~~~~i~~~~~i~~------~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i---------~~~~I~~ 110 (183)
+..|.|++.+..++.|++++++.+ ++.+++.++|.-++.++..++||+||.||-++.| ..++|++
T Consensus 108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igd 187 (271)
T COG2171 108 GVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGD 187 (271)
T ss_pred ceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECC
Confidence 355555555555555555555555 5555666666666666666777888888888887 3589999
Q ss_pred CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165 (183)
Q Consensus 111 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~ 165 (183)
+|.||+++.+.. ++.+|++|+|.+|+.|.++++..
T Consensus 188 ncliGAns~~ve--------------------GV~vGdg~VV~aGv~I~~~tki~ 222 (271)
T COG2171 188 NCLIGANSEVVE--------------------GVIVGDGCVVAAGVFITQDTKIY 222 (271)
T ss_pred ccEeccccceEe--------------------eeEeCCCcEEecceEEeCCcceE
Confidence 999999986665 99999999999999999995433
No 123
>PLN02739 serine acetyltransferase
Probab=99.41 E-value=2.4e-12 Score=102.03 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=40.9
Q ss_pred ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCEE
Q 030076 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSKI 174 (183)
Q Consensus 105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~I 174 (183)
+++||++|+||+++.|.. ++.||+++.||+|++|.+.++ ..++.|..+.+
T Consensus 257 ~p~IGd~V~IGagA~IlG--------------------~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAri 307 (355)
T PLN02739 257 HPKIGDGALLGACVTILG--------------------NISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKL 307 (355)
T ss_pred CcEECCCCEEcCCCEEeC--------------------CeEECCCCEECCCCEECCCCCCCcEEEecCCEE
Confidence 478999999999999986 899999999999999998874 44555555543
No 124
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.41 E-value=1.3e-12 Score=108.23 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=88.5
Q ss_pred hhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEE---CCCcE-EccCcEECCCcEECCCCEECCCCE
Q 030076 15 TYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI---EVGAI-VHSKAVLGANVCIGSGTVVGPAVT 90 (183)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~~~-i~~~~~ig~~~~I~~~~~I~~~~~ 90 (183)
.+|.|++++..|+.+++.++.......+......+.......+++.+ +.++. +..+++|+++|.| +++.|+ +++
T Consensus 268 gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~sv 345 (425)
T PRK00725 268 PYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSV 345 (425)
T ss_pred CeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCE
Confidence 58999999999999888876543222222222112211222222222 12211 2347889999999 788886 579
Q ss_pred ECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 91 IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 91 Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
|+++|.|+++|.|.+|+|+++|.|++++.|. .++|++++.|++++.+..+.
T Consensus 346 i~~~~~I~~~~~i~~svi~~~~~I~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~ 396 (425)
T PRK00725 346 LFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR---------------------RCVIDRGCVIPEGMVIGEDP 396 (425)
T ss_pred ECCCCEECCCCEEeeeEEcCCCEECCCCEEe---------------------eEEECCCCEECCCCEECCCC
Confidence 9999999999999999999999999999997 78999999999998887553
No 125
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.9e-13 Score=101.89 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=104.7
Q ss_pred HhhhhhhhHHHhhhhhhcccchhhhhhh--h-hccc---CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCE
Q 030076 11 RLTKTYKQDFGRFCNLFSTKSDIESRQQ--F-QKWH---NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV 84 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~~---~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~ 84 (183)
..+.++|.++.+....+.++...+...+ . ..+. +....|-.+++|+|++++.++++|+||+.||.++.||++++
T Consensus 241 y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvR 320 (407)
T KOG1460|consen 241 YETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVR 320 (407)
T ss_pred EecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCce
Confidence 3556889998877777777766654311 1 1111 23346778899999999999999999999999999999999
Q ss_pred ECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcC
Q 030076 85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160 (183)
Q Consensus 85 I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 160 (183)
|++. +|.+++.|.+++.+.+++||..+.||..+.+...+-.-.. ......-+++|+.+.+++.+.+..
T Consensus 321 l~~s-IIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~-------~~~~~a~Tilga~v~v~dev~v~~ 388 (407)
T KOG1460|consen 321 LRES-IILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP-------NLPFAALTILGADVSVEDEVIVLN 388 (407)
T ss_pred eeee-eeccCcEeeccceEEeeeecccccccceeeecccccccCC-------CCCcceeEEecccceecceeEEee
Confidence 9866 9999999999999999999999999999999863210000 011112467777777776666643
No 126
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.40 E-value=5.4e-12 Score=84.86 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=60.9
Q ss_pred cEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccC
Q 030076 59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138 (183)
Q Consensus 59 ~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~ 138 (183)
+.|++++.| .++.||++|.|+ ++.|. ++.|++++.|++++.|.+++|++++.|++++.+.
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~----------------- 61 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR----------------- 61 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-----------------
Confidence 345555555 356777777777 77775 4588888888888888888888888888888886
Q ss_pred CceeceEECCCCEECCCcEEcCCC
Q 030076 139 PQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 139 ~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
+++|++++.|++++.+..+.
T Consensus 62 ----~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 62 ----RAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred ----eEEECCCCEECCCCEECCCc
Confidence 78888888888888887663
No 127
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.39 E-value=5.9e-12 Score=91.93 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=64.2
Q ss_pred EccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceE
Q 030076 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCI 107 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~ 107 (183)
+++++++.+++.+. ...++.||+++.|+.++.|. ..++||+++.|+++|.|. ++.
T Consensus 45 ~~~~~~i~~~~~~~----~~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~ 120 (169)
T cd03357 45 VGENVYIEPPFHCD----YGYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPIT 120 (169)
T ss_pred cCCCCEEcCCEEEE----eCCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcE
Confidence 34445555554431 11233444444444444443 345677777777777662 578
Q ss_pred ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCC
Q 030076 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHS 172 (183)
Q Consensus 108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~ 172 (183)
|+++|+|++++.|.+ ++.||++++||+++++.+..+. ..+.|..+
T Consensus 121 IG~~~~Ig~~a~I~~--------------------gv~Ig~~~~VgagavV~~~vp~~~vv~G~PA 166 (169)
T cd03357 121 IGDNVWIGGGVIILP--------------------GVTIGDNSVIGAGSVVTKDIPANVVAAGNPA 166 (169)
T ss_pred eCCCEEECCCCEEeC--------------------CCEECCCCEECCCCEEccccCCCcEEEcccc
Confidence 999999999999987 8999999999999999977532 33344443
No 128
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.38 E-value=1.2e-11 Score=82.66 Aligned_cols=62 Identities=32% Similarity=0.446 Sum_probs=42.7
Q ss_pred CCCEECCCCEECCCcEECCCcE---EeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcE
Q 030076 81 SGTVVGPAVTIGQSTNIGFNVA---LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC 157 (183)
Q Consensus 81 ~~~~I~~~~~Ig~~~~Ig~~~~---i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 157 (183)
+++.|++++.|++++.|++++. +..++|+++++|++++.+.. .+.|+++++|+++++
T Consensus 27 ~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~--------------------~~~Ig~~~~i~~~~~ 86 (101)
T cd03354 27 ETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG--------------------NITIGDNVKIGANAV 86 (101)
T ss_pred CCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC--------------------cCEECCCCEECCCCE
Confidence 3333333333444444554543 56778899999999988876 788999999999998
Q ss_pred EcCCC
Q 030076 158 IDRGS 162 (183)
Q Consensus 158 v~~g~ 162 (183)
+.++.
T Consensus 87 i~~~~ 91 (101)
T cd03354 87 VTKDV 91 (101)
T ss_pred ECccc
Confidence 88653
No 129
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.37 E-value=1.1e-11 Score=96.34 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=68.1
Q ss_pred EEccceEECCCcEECCCcEEccCc-EECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEECCCCEECCC
Q 030076 48 IFHQSACIDSTVLIEVGAIVHSKA-VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CIIGDSCIIHNG 117 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I~~~~~Ig~~ 117 (183)
.+..++++++++.|.+++.|..++ .||+. .| ++.|+.+++||+++.|+.++.|.. +.|+++|+||.+
T Consensus 161 rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag 237 (319)
T TIGR03535 161 RVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN 237 (319)
T ss_pred eeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence 333445556666666666666666 46654 45 467778889999999999999633 889999999999
Q ss_pred cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
+.| +..||++|.||+|++|.++
T Consensus 238 A~I----------------------GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 238 SGL----------------------GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred CEE----------------------CeEECCCCEECCCCEEeCC
Confidence 999 5789999999999999988
No 130
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.37 E-value=2.9e-12 Score=104.04 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=54.7
Q ss_pred hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEE-ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIF-HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG 92 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig 92 (183)
..+|.++++...++.++..++..............+ ....++.+++.++.++.+ +++.|+++|.|+++ .+. +++|+
T Consensus 238 ~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~-~s~i~ 314 (361)
T TIGR02091 238 SGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS-HSVLG 314 (361)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEE-ccEEC
Confidence 468899998988888877776543221111111111 111233444444444433 34455555555443 342 34555
Q ss_pred CCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 93 QSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 93 ~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
++|.|+++|.|.+++|++++.|++++.+.
T Consensus 315 ~~~~I~~~~~i~~sii~~~~~v~~~~~l~ 343 (361)
T TIGR02091 315 IRVRIGSGSTVEDSVIMGDVGIGRGAVIR 343 (361)
T ss_pred CCCEECCCCEEeeeEEeCCCEECCCCEEe
Confidence 55666666665555555555555555554
No 131
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.37 E-value=4.1e-13 Score=104.64 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=95.6
Q ss_pred HhhhhhhhHHHhhhhhhcccchhhhhhhh--hcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC
Q 030076 11 RLTKTYKQDFGRFCNLFSTKSDIESRQQF--QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA 88 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~ 88 (183)
..++++|.|++++..++......+...+. .+.+-.+..+..+..+.+.+.++++|.|++++.||++|.|++++.|...
T Consensus 221 ~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s 300 (371)
T KOG1322|consen 221 FDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDS 300 (371)
T ss_pred EecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEee
Confidence 35689999999999999775544433221 1222333445556667777788888888888888888888888888655
Q ss_pred CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 89 ~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
+|..+..++.++.|..++++.++.||.++.|.. .++||+++.|...-.+..+
T Consensus 301 -~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~--------------------~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 301 -TILGADYYETHSEISSSIVGWNVPIGIWARIDK--------------------NAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred -EEEccceechhHHHHhhhccccccccCceEEec--------------------ccEeccceEEecccccccc
Confidence 555668888888888888888888888888876 7788888777766666555
No 132
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.36 E-value=1.4e-11 Score=102.26 Aligned_cols=121 Identities=21% Similarity=0.156 Sum_probs=62.3
Q ss_pred CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCc-e-----eecc
Q 030076 58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG-F-----FVDE 131 (183)
Q Consensus 58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~-~-----~~~~ 131 (183)
++.+.+++.|.+.+.|++++.|++++.|+ +++|+++|.|+. +.+.+++|++++.|++++.|.+...+ + ....
T Consensus 253 ~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~ 330 (430)
T PRK14359 253 TIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLN 330 (430)
T ss_pred eeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEec
Confidence 34445555555566666666666666665 556666666654 44555666666666555555432111 1 1121
Q ss_pred CCccccCCceeceEECCCCEECCCcEEcCCC---CCCeEECCCCEECCCCeE
Q 030076 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 132 ~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~---~~~~~Ig~~~~I~~~~~v 180 (183)
.-..-+......++||++|.||+++++.... ...++||+++.|++++.|
T Consensus 331 ~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i 382 (430)
T PRK14359 331 GVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQL 382 (430)
T ss_pred cccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEE
Confidence 1122234555567777777777766553221 123445555555544443
No 133
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.34 E-value=3.3e-11 Score=81.44 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=22.2
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
++.||++|+|++++.+.++ ++||++|.|++++.|
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g----~~Ig~~~~i~~gs~v 89 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPG----VTIGEGAVVGARSVV 89 (107)
T ss_pred CEEECCCCEECCCCEECCC----CEECCCCEECCCCEE
Confidence 5666666666666666665 666666666666665
No 134
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.34 E-value=1.6e-11 Score=82.93 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=39.0
Q ss_pred eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCC
Q 030076 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHS 172 (183)
Q Consensus 104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~ 172 (183)
..+.|+++|+|+.++.|.. ++.|++++.|++++++.+.. +.....|..+
T Consensus 55 ~~v~Ig~~~~ig~~~~i~~--------------------g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa 104 (107)
T cd05825 55 APIVIGDGAWVAAEAFVGP--------------------GVTIGEGAVVGARSVVVRDLPAWTVYAGNPA 104 (107)
T ss_pred CCEEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEEeCcCCCCCEEECCcc
Confidence 4678999999999999987 89999999999999998764 3334444444
No 135
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=8.4e-12 Score=104.36 Aligned_cols=142 Identities=17% Similarity=0.243 Sum_probs=95.4
Q ss_pred hhHHHhhhhhhcccc--hhhhhhhhhcccCC-CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC
Q 030076 17 KQDFGRFCNLFSTKS--DIESRQQFQKWHNG-GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ 93 (183)
Q Consensus 17 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~ 93 (183)
|.+++..+.|+..+. .++... ...... ...+.++..+++++.|++++.|.+++.||+++.|+++|.|+ +++|++
T Consensus 229 ~~di~~~~~y~~~~~~~~~l~~~--~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~ 305 (456)
T PRK09451 229 RLQLARLERVYQAEQAEKLLLAG--VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGD 305 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcC
Confidence 667777777775442 111100 000011 11133445677888888888888889999999999999996 679999
Q ss_pred CcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEE-----------cCCC
Q 030076 94 STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI-----------DRGS 162 (183)
Q Consensus 94 ~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v-----------~~g~ 162 (183)
+|.|++++.|.+++|++++.|++++.|.. ++.+++++.|++++.+ ...+
T Consensus 306 ~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~ 365 (456)
T PRK09451 306 DCEISPYSVVEDANLGAACTIGPFARLRP--------------------GAELAEGAHVGNFVEMKKARLGKGSKAGHLT 365 (456)
T ss_pred CCEEcCCEEEeCCccCCCcEecCceEEeC--------------------CCEECCCceeccceeeeceeeCCCCccCccc
Confidence 99999999999999999999999988875 3444444444443322 1111
Q ss_pred -CCCeEECCCCEECCCCeEe
Q 030076 163 -WRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 163 -~~~~~Ig~~~~I~~~~~v~ 181 (183)
..++.||+++.|++++++.
T Consensus 366 ~~g~~~ig~~~~ig~~~~~~ 385 (456)
T PRK09451 366 YLGDAEIGDNVNIGAGTITC 385 (456)
T ss_pred cccccEECCCCEEcCCeEEe
Confidence 2347888888888888764
No 136
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.8e-11 Score=98.22 Aligned_cols=94 Identities=38% Similarity=0.574 Sum_probs=81.1
Q ss_pred ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc
Q 030076 61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ 140 (183)
Q Consensus 61 i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (183)
+.. +.|.++++|+++|.|++++.|++.++||++|.|++++.|.+|+|.++|.|++++.+.
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~------------------- 312 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG------------------- 312 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEe-------------------
Confidence 445 788899999999999999999999999999999999999999999999999999999
Q ss_pred eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++|+++|.||++. . ..+ +.+|.++.+.+++.++
T Consensus 313 --~sIi~~~~~ig~~~-~---i~d-~~~g~~~~i~~g~~~~ 346 (358)
T COG1208 313 --DSIIGENCKIGASL-I---IGD-VVIGINSEILPGVVVG 346 (358)
T ss_pred --eeEEcCCcEECCce-e---ecc-eEecCceEEcCceEeC
Confidence 89999999999822 2 224 6677777777776665
No 137
>PLN02694 serine O-acetyltransferase
Probab=99.30 E-value=1.3e-11 Score=96.06 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=21.9
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.++||++|+||++++|..+ ++||++++|+++++|.
T Consensus 212 ~piIGd~V~IGagA~Ilgg----i~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 212 HPKIGDGVLIGAGATILGN----VKIGEGAKIGAGSVVL 246 (294)
T ss_pred ccEECCCeEECCeeEECCC----CEECCCCEECCCCEEC
Confidence 4566666666666666655 6666666666666653
No 138
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.30 E-value=3.4e-11 Score=76.11 Aligned_cols=34 Identities=44% Similarity=0.606 Sum_probs=28.1
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
++.|+++++++.++.+.++ ++||+++.|++++.|
T Consensus 44 ~~~ig~~~~v~~~~~i~~~----~~ig~~~~i~~~s~v 77 (78)
T cd00208 44 PTIIGDNVEIGANAVIHGG----VKIGDNAVIGAGAVV 77 (78)
T ss_pred CcEECCCcEECCCCEEeCC----CEECCCCEECcCcEe
Confidence 6788888888888888887 888888888888776
No 139
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.29 E-value=4e-11 Score=75.79 Aligned_cols=67 Identities=31% Similarity=0.506 Sum_probs=42.9
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEECCCCEECCCcEECCCCCceeeccCCccccCCcee
Q 030076 72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL 142 (183)
Q Consensus 72 ~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 142 (183)
.|++++.|++++.|++.+.|++++.|++++.|.+ +.|+++++++.++.+.+
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~-------------------- 61 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG-------------------- 61 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC--------------------
Confidence 3444555555555544455555566666555543 67778888887777765
Q ss_pred ceEECCCCEECCCcEE
Q 030076 143 NARIGNHVEIGANSCI 158 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v 158 (183)
++.|++++.|++++.+
T Consensus 62 ~~~ig~~~~i~~~s~v 77 (78)
T cd00208 62 GVKIGDNAVIGAGAVV 77 (78)
T ss_pred CCEECCCCEECcCcEe
Confidence 6777777777777765
No 140
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.29 E-value=3.1e-11 Score=100.46 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=74.4
Q ss_pred eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC---------------C---cEECCCcEEeceEECCCCEE
Q 030076 53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ---------------S---TNIGFNVALSNCIIGDSCII 114 (183)
Q Consensus 53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~---------------~---~~Ig~~~~i~~~~I~~~~~I 114 (183)
+.|++++.|+ ++.|. +++|+++|.|+++|.|++++.++. + +.|+++|.|.+++|+++++|
T Consensus 316 s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6788888888 88884 678999999999999988766673 3 38999999999999999999
Q ss_pred CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
++++.+.+ ..-+.+...+|+++++..|. ++||+++.|.++++|
T Consensus 394 g~~~~i~~--------------------~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 394 GKNVVIIN--------------------KDGVQEADREEEGYYIRSGI---VVILKNAVIPDGTVI 436 (436)
T ss_pred CCCcEEec--------------------ccccCCccccccccEEeCCE---EEEcCCcEeCCCCCC
Confidence 99999975 23333333344444444330 367777777777653
No 141
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.28 E-value=4.3e-11 Score=80.49 Aligned_cols=66 Identities=33% Similarity=0.516 Sum_probs=32.7
Q ss_pred EECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076 54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~ 122 (183)
.|++++.|+ ++.|. ++.+++++.|++++.|. ++.|++++.|++++.|.+++|++++.|++++.+.+
T Consensus 14 ~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~-~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 14 LVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVE-DSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred EECCCCEEc-CeEEE-eCEEeCCCEECCCCEEE-EeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 334444443 33332 34455555555555553 23555555555555555555555555555555543
No 142
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.28 E-value=9.2e-11 Score=79.11 Aligned_cols=87 Identities=25% Similarity=0.357 Sum_probs=51.7
Q ss_pred EECCCcEECCCcEEcc--CcEECCCcEECCCCEECCC--CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceee
Q 030076 54 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPA--VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 129 (183)
Q Consensus 54 ~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~--~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~ 129 (183)
+|++++.|+++++|.+ ++.||++|.|++++.|... ..+..+..+........+.|+++|+|++++.+.+
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~------- 75 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILP------- 75 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcC-------
Confidence 3444444444444444 5556666666666665432 2223333333344456677777777777777765
Q ss_pred ccCCccccCCceeceEECCCCEECCCcEEcC
Q 030076 130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 160 (183)
++.|++++++++++.+.+
T Consensus 76 -------------~~~ig~~~~i~~~~~v~~ 93 (109)
T cd04647 76 -------------GVTIGDGAVVGAGSVVTK 93 (109)
T ss_pred -------------CCEECCCCEECCCCEEee
Confidence 777788888887777763
No 143
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=7.2e-11 Score=78.92 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=65.9
Q ss_pred ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEEeceEECCCCEECCCc
Q 030076 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 118 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~ 118 (183)
++.....+.+++.+.+++.|++++.|++++.|.+++.|++++.|+ .+++|++++.+++++.|.+++|++++.|++++
T Consensus 13 ~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~ 92 (101)
T cd05635 13 YIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGT 92 (101)
T ss_pred EECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEEeeeEECCCCEECCCc
Confidence 445566677777777777777777777777777777777777776 57789999999999999999999999999999
Q ss_pred EECC
Q 030076 119 CIGQ 122 (183)
Q Consensus 119 ~i~~ 122 (183)
.+.+
T Consensus 93 ~~~~ 96 (101)
T cd05635 93 NNSD 96 (101)
T ss_pred eecc
Confidence 8875
No 144
>PRK10191 putative acyl transferase; Provisional
Probab=99.27 E-value=7.9e-11 Score=83.68 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=23.9
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
.+.||++++|++++.+.++ +.||+++.|+++++|.
T Consensus 92 ~~~IGd~~~Ig~~~~I~~~----v~IG~~~~Igags~V~ 126 (146)
T PRK10191 92 CPHIGNGVELGANVIILGD----ITIGNNVTVGAGSVVL 126 (146)
T ss_pred CCEECCCcEEcCCCEEeCC----CEECCCCEECCCCEEC
Confidence 4567777777777777666 7777777777776663
No 145
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.26 E-value=2.8e-10 Score=84.03 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=60.7
Q ss_pred ceEECCCcE--ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------------ceEECC
Q 030076 52 SACIDSTVL--IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------------NCIIGD 110 (183)
Q Consensus 52 ~~~i~~~~~--i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------------~~~I~~ 110 (183)
+++|.++.. ++.++.|++++.|+.+|.|.+.+.| +||++|.|+++|.|. .+.|++
T Consensus 59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I----~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd 134 (183)
T PRK10092 59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI----RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGN 134 (183)
T ss_pred CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE----EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECC
Confidence 455555553 3445555555555555554444433 777777777777772 468999
Q ss_pred CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (183)
Q Consensus 111 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~ 162 (183)
+|+||+++.|.+ ++.||++++|++++++.+..
T Consensus 135 ~v~IG~~a~I~~--------------------gv~IG~~~vIgagsvV~~di 166 (183)
T PRK10092 135 NVWIGGRAVINP--------------------GVTIGDNVVVASGAVVTKDV 166 (183)
T ss_pred CcEECCCCEECC--------------------CCEECCCCEECCCCEEcccc
Confidence 999999999987 89999999999999998764
No 146
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.26 E-value=8.5e-11 Score=79.28 Aligned_cols=89 Identities=33% Similarity=0.387 Sum_probs=52.3
Q ss_pred cEECCCcEECCCCEECC--CCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECC
Q 030076 71 AVLGANVCIGSGTVVGP--AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 148 (183)
Q Consensus 71 ~~ig~~~~I~~~~~I~~--~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 148 (183)
+.||+++.|++++.|.+ ++.||++|.|+++|.|.+. ++..+..+..+. ......++.||+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~---~~~~~~~~~~~~---------------~~~~~~~~~Ig~ 63 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH---NHDIDDPERPIE---------------QGVTSAPIVIGD 63 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC---CCCCCccccccc---------------cccccCCeEECC
Confidence 34555566666665655 5666666666666666443 122222221110 011122788888
Q ss_pred CCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+++|++++.+.++ ++|++++.+++++.|.
T Consensus 64 ~~~ig~~~~i~~~----~~ig~~~~i~~~~~v~ 92 (109)
T cd04647 64 DVWIGANVVILPG----VTIGDGAVVGAGSVVT 92 (109)
T ss_pred CCEECCCCEEcCC----CEECCCCEECCCCEEe
Confidence 8888888888766 7777777777777663
No 147
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.25 E-value=8.8e-11 Score=87.05 Aligned_cols=73 Identities=23% Similarity=0.136 Sum_probs=46.8
Q ss_pred ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+.+|++++.+++++.+....+........... .....+++||++||||++++|.+| ++||++++|+++|+|.+
T Consensus 87 ~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~-~~~~~~v~IG~~vwIG~~a~IlpG----V~IG~gavigagsVVtk 159 (190)
T COG0110 87 GITIGDNVVVGPNVTIYTNSHPGDFVTANIGA-LVGAGPVTIGEDVWIGAGAVILPG----VTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CeEECCCceECCCcEEecCCCCCChhhcccCC-ceecCCeEECCCeEEcCccEECCC----EEECCCcEEeeCCEEeC
Confidence 34566666666666665431111000000000 222347999999999999999998 99999999999999864
No 148
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.24 E-value=3e-10 Score=82.36 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=66.1
Q ss_pred ccCCCcEEccceEECCCcEECC--CcEEccCcEECCCcEECCCCEECCC--------CEECCCcEECCCcEEe-ceEECC
Q 030076 42 WHNGGGIFHQSACIDSTVLIEV--GAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFNVALS-NCIIGD 110 (183)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~I~~~--------~~Ig~~~~Ig~~~~i~-~~~I~~ 110 (183)
++..+..|++.+.|++++.|++ ++.|++++.||++|.|++++.|+.. .+|+++|.|+.++.|. +++|++
T Consensus 57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~ 136 (162)
T TIGR01172 57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGE 136 (162)
T ss_pred heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECC
Confidence 3445677888888888888864 4788888899999999999988743 5899999999999984 478999
Q ss_pred CCEECCCcEECC
Q 030076 111 SCIIHNGVCIGQ 122 (183)
Q Consensus 111 ~~~Ig~~~~i~~ 122 (183)
++.|++++.+..
T Consensus 137 ~~~Iga~s~V~~ 148 (162)
T TIGR01172 137 NAKIGANSVVLK 148 (162)
T ss_pred CCEECCCCEECC
Confidence 999999888875
No 149
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=95.48 Aligned_cols=96 Identities=30% Similarity=0.439 Sum_probs=75.8
Q ss_pred CCcEEccceEECCCcEECCCcEEcc---CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076 45 GGGIFHQSACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (183)
Q Consensus 45 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~ 121 (183)
....|++++.+ .++.|+++|.|++ ++.|+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.+.
T Consensus 281 ~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~ 358 (380)
T PRK05293 281 PPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIG 358 (380)
T ss_pred CCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEc
Confidence 34556666666 3556788887764 57899999999999996 5599999999999999999999999999999998
Q ss_pred CCCCceeeccCCccccCCceeceEECCCCEECCCcEE
Q 030076 122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158 (183)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v 158 (183)
+... .+.+||+++.|.+++++
T Consensus 359 ~~~~----------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 359 GGKE----------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred CCCc----------------eeEEEeCCCCCCCCcEe
Confidence 6311 13778888877777665
No 150
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.23 E-value=4.9e-11 Score=92.63 Aligned_cols=35 Identities=29% Similarity=0.239 Sum_probs=32.2
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
..+||++|+||+|++|.++ ++||++++|+++++|.
T Consensus 193 ~p~IGd~V~IGaga~Ilgg----v~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGN----IEVGRGAKIGAGSVVL 227 (273)
T ss_pred CCEECCCcEEcCCCEEcCC----CEECCCCEECCCCEEC
Confidence 4689999999999999988 9999999999999984
No 151
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.23 E-value=1.6e-10 Score=77.15 Aligned_cols=34 Identities=38% Similarity=0.479 Sum_probs=27.1
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
.++|+++++|++++.+..+ ++||+++.|++++.|
T Consensus 54 ~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~i~~~~~i 87 (101)
T cd03354 54 HPTIGDNVVIGAGAKILGN----ITIGDNVKIGANAVV 87 (101)
T ss_pred CCEECCCcEEcCCCEEECc----CEECCCCEECCCCEE
Confidence 6788888888888888776 778888888887776
No 152
>PLN02357 serine acetyltransferase
Probab=99.22 E-value=8.7e-11 Score=93.89 Aligned_cols=74 Identities=28% Similarity=0.434 Sum_probs=38.7
Q ss_pred EEccceEECCCcEECC--CcEEccCcEECCCcEECCCCEECC--------CCEECCCcEECCCcEE-eceEECCCCEECC
Q 030076 48 IFHQSACIDSTVLIEV--GAIVHSKAVLGANVCIGSGTVVGP--------AVTIGQSTNIGFNVAL-SNCIIGDSCIIHN 116 (183)
Q Consensus 48 ~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~I~~--------~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~ 116 (183)
.|++.+.|++++.|.. +++|+++++||++|.|..++.|++ .++||++|.||.++.| .+++||+++.||+
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence 4555555555555543 445555555555555555555543 1455555555555554 3455555555555
Q ss_pred CcEEC
Q 030076 117 GVCIG 121 (183)
Q Consensus 117 ~~~i~ 121 (183)
++.|.
T Consensus 308 gSVV~ 312 (360)
T PLN02357 308 GSVVL 312 (360)
T ss_pred CCEEC
Confidence 55554
No 153
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.4e-10 Score=91.85 Aligned_cols=74 Identities=31% Similarity=0.428 Sum_probs=61.7
Q ss_pred EccceEECCC-----cEECCCcEEcc---CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEE
Q 030076 49 FHQSACIDST-----VLIEVGAIVHS---KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120 (183)
Q Consensus 49 i~~~~~i~~~-----~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i 120 (183)
..|++++..+ ..++.||+|.+ +++|+.++.|++++.|++. +|.++|.||++|+|++++|+++|.|++|+.|
T Consensus 282 ~~pPak~~~~s~v~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~s-vim~~~~IG~~~~l~~aIIDk~v~I~~g~~i 360 (393)
T COG0448 282 NLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENS-VIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI 360 (393)
T ss_pred CCCCceEecCceEeeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEee-EEeCCcEECCCCEEEEEEeCCCcEeCCCcEE
Confidence 4455555443 33677777775 6789999999999999755 9999999999999999999999999999999
Q ss_pred CCC
Q 030076 121 GQD 123 (183)
Q Consensus 121 ~~~ 123 (183)
+.+
T Consensus 361 ~~~ 363 (393)
T COG0448 361 GGD 363 (393)
T ss_pred cCC
Confidence 974
No 154
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.17 E-value=3.7e-10 Score=91.54 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=46.3
Q ss_pred cEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCC
Q 030076 71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 150 (183)
Q Consensus 71 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 150 (183)
+.+.+.+.|++++.| .+++|...|.||++|.|.+++|+++|.|++++.|++ +....++|++++
T Consensus 249 ~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~----------------~~i~~s~i~~~~ 311 (353)
T TIGR01208 249 SKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRD----------------AEVEHSIVLDES 311 (353)
T ss_pred CEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEee----------------eEEEeeEEcCCC
Confidence 344444444444544 333444455555555555666666666666666652 011156666677
Q ss_pred EECCCc-EEcCCCCCCeEECCCCEECCCCe
Q 030076 151 EIGANS-CIDRGSWRDTVIGDHSKIDNLVQ 179 (183)
Q Consensus 151 ~Ig~~~-~v~~g~~~~~~Ig~~~~I~~~~~ 179 (183)
.|+.++ .+. + ++|++++.|+++..
T Consensus 312 ~i~~~~~~~~-~----~ii~~~~~i~~~~~ 336 (353)
T TIGR01208 312 VIEGVQARIV-D----SVIGKKVRIKGNRR 336 (353)
T ss_pred EEcCCcceee-c----CEEcCCCEECCCcc
Confidence 666552 332 2 55555555555543
No 155
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.17 E-value=2.9e-11 Score=88.21 Aligned_cols=90 Identities=36% Similarity=0.453 Sum_probs=56.9
Q ss_pred ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc
Q 030076 61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ 140 (183)
Q Consensus 61 i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (183)
+..++.|+|++.||++.+|.++.-| +|++.+ +||++|.|-.+++++...... .
T Consensus 64 ~~~gieIhp~A~IG~g~fIdHg~Gv----VIgeta-----------~IGddv~I~~gVTLGgtg~~~------------g 116 (194)
T COG1045 64 FLFGIEIHPGAKIGRGLFIDHGTGV----VIGETA-----------VIGDDVTIYHGVTLGGTGKES------------G 116 (194)
T ss_pred hhcceeeCCCCeECCceEEcCCceE----EEccee-----------EECCCeEEEcceEecCCCCcC------------C
Confidence 3446666666666666666665322 444433 344555555555555421000 0
Q ss_pred eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+..-.||+++.||+|+.|... -.||+++.|||||+|-
T Consensus 117 ~RhPtIg~~V~IGagAkILG~----I~IGd~akIGA~sVVl 153 (194)
T COG1045 117 KRHPTIGNGVYIGAGAKILGN----IEIGDNAKIGAGSVVL 153 (194)
T ss_pred CCCCccCCCeEECCCCEEEcc----eEECCCCEECCCceEc
Confidence 113469999999999999877 9999999999999984
No 156
>PLN02739 serine acetyltransferase
Probab=99.17 E-value=1.6e-10 Score=91.76 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=31.7
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
..+||++|+||+|++|.++ +.||++++|++|++|.
T Consensus 257 ~p~IGd~V~IGagA~IlG~----V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 257 HPKIGDGALLGACVTILGN----ISIGAGAMVAAGSLVL 291 (355)
T ss_pred CcEECCCCEEcCCCEEeCC----eEECCCCEECCCCEEC
Confidence 5789999999999999988 9999999999999884
No 157
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.16 E-value=9.2e-11 Score=81.07 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=84.3
Q ss_pred ceEECCCcEECCCcEEcc---CcEECCCcEECCCCEECC------------CCEECCCcEECCCcEEeceEECCCCEECC
Q 030076 52 SACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVGP------------AVTIGQSTNIGFNVALSNCIIGDSCIIHN 116 (183)
Q Consensus 52 ~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~------------~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~ 116 (183)
+..+.+.+.+.++++|.+ ++.+|..|.+++++.|++ ...||+.+.|++.|++..+.|+..+++|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 344566777788888875 778999999999999986 34899999999999999999999999999
Q ss_pred CcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCC
Q 030076 117 GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 177 (183)
Q Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~ 177 (183)
++.|++ +|++.+-|+|-+++++.+. +.+.+-+.++.+
T Consensus 113 naviGr--------------------rCVlkdCc~ild~tVlPpe----t~vppy~~~~g~ 149 (184)
T KOG3121|consen 113 NAVIGR--------------------RCVLKDCCRILDDTVLPPE----TLVPPYSTIGGN 149 (184)
T ss_pred ceeEcC--------------------ceEhhhheeccCCcccCcc----cccCCceEEcCC
Confidence 999998 8999999999999998877 666665555543
No 158
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.2e-10 Score=92.67 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=60.6
Q ss_pred cCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECC
Q 030076 69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 148 (183)
Q Consensus 69 ~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 148 (183)
..+.+++++.|++++.|. .++||.+|.||+++.|.+|++.+++.||+|+.|. +|+||.
T Consensus 333 ~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ie---------------------nsIIg~ 390 (433)
T KOG1462|consen 333 ADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIE---------------------NSIIGM 390 (433)
T ss_pred hhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCccee---------------------cceecc
Confidence 344555555666666664 3488888888888888888888888888888887 788888
Q ss_pred CCEECCCcEEcCCCCCCeEECCCCEECCC
Q 030076 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNL 177 (183)
Q Consensus 149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~ 177 (183)
++.||+++.+. +|.||++=++.+.
T Consensus 391 gA~Ig~gs~L~-----nC~Ig~~yvVeak 414 (433)
T KOG1462|consen 391 GAQIGSGSKLK-----NCIIGPGYVVEAK 414 (433)
T ss_pred cceecCCCeee-----eeEecCCcEEccc
Confidence 88888888775 3777777777643
No 159
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.10 E-value=1.1e-09 Score=77.97 Aligned_cols=37 Identities=35% Similarity=0.335 Sum_probs=31.4
Q ss_pred eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
..+++||++|+|++++.+.++ ++||++++|+++++|.
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~g----v~Ig~~~vIgags~V~ 107 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPG----VTIGDGAVIAAGAVVT 107 (145)
T ss_pred cCCcEECCCCEECCCCEEeCC----CEECCCCEECCCCEEc
Confidence 348889999999999999887 8888888888888874
No 160
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.09 E-value=5.9e-10 Score=92.63 Aligned_cols=69 Identities=26% Similarity=0.391 Sum_probs=58.6
Q ss_pred ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC------------------CcEECCCcEEeceEECCCCE
Q 030076 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ------------------STNIGFNVALSNCIIGDSCI 113 (183)
Q Consensus 52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~------------------~~~Ig~~~~i~~~~I~~~~~ 113 (183)
++.|++++.| +++.|. +++|+++|.|++++.|.++++++. ++.|+++|.|.+++|+++|.
T Consensus 308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 385 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR 385 (429)
T ss_pred eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence 3678888888 677775 689999999999999977744452 79999999999999999999
Q ss_pred ECCCcEECC
Q 030076 114 IHNGVCIGQ 122 (183)
Q Consensus 114 Ig~~~~i~~ 122 (183)
|++++.+.+
T Consensus 386 i~~~~~~~~ 394 (429)
T PRK02862 386 IGNNVRIVN 394 (429)
T ss_pred ECCCcEEec
Confidence 999999975
No 161
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=6.1e-10 Score=88.71 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=69.9
Q ss_pred EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCcee
Q 030076 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 128 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~ 128 (183)
++..+.+++++.|++++.| ..++||.+|.||+.+.|. ++.+++++.||+++.|++|+|+.++.|+.++.+.
T Consensus 331 ~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~-nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~------- 401 (433)
T KOG1462|consen 331 VGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVA-NSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLK------- 401 (433)
T ss_pred cchhhccCCCceeccccee-eeeeecCCccccCCcEEE-eeEeecCcEecCCcceecceecccceecCCCeee-------
Confidence 3344455555555555544 356789999999999995 4599999999999999999999999999999998
Q ss_pred eccCCccccCCceeceEECCCCEECCCcEEc
Q 030076 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCID 159 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~ 159 (183)
+|.||.+-++.+.....
T Consensus 402 --------------nC~Ig~~yvVeak~~~~ 418 (433)
T KOG1462|consen 402 --------------NCIIGPGYVVEAKGKHG 418 (433)
T ss_pred --------------eeEecCCcEEccccccc
Confidence 78888888887665544
No 162
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.05 E-value=4.6e-10 Score=83.33 Aligned_cols=59 Identities=32% Similarity=0.452 Sum_probs=33.8
Q ss_pred EECCCCEECCCcEECCCcEE---------eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECC
Q 030076 84 VVGPAVTIGQSTNIGFNVAL---------SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154 (183)
Q Consensus 84 ~I~~~~~Ig~~~~Ig~~~~i---------~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~ 154 (183)
+|++-++||++|+|.+++.+ ++..|+++++||.+++|.+ ++.||++++|++
T Consensus 170 vigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILg--------------------nV~IGegavIaA 229 (269)
T KOG4750|consen 170 VIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILG--------------------NVTIGEGAVIAA 229 (269)
T ss_pred eecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeC--------------------CeeECCCcEEec
Confidence 34444444555555554444 2456666666666666654 666666666666
Q ss_pred CcEEcCCC
Q 030076 155 NSCIDRGS 162 (183)
Q Consensus 155 ~~~v~~g~ 162 (183)
|++|..++
T Consensus 230 GsvV~kDV 237 (269)
T KOG4750|consen 230 GSVVLKDV 237 (269)
T ss_pred cceEEecc
Confidence 66666555
No 163
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.05 E-value=1.6e-09 Score=89.43 Aligned_cols=71 Identities=27% Similarity=0.452 Sum_probs=62.6
Q ss_pred ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076 50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (183)
Q Consensus 50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~ 123 (183)
.++++|++++.|+ ++.|. +++|+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.+..+
T Consensus 313 ~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~ 383 (407)
T PRK00844 313 AQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGVD 383 (407)
T ss_pred EEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEECCC
Confidence 3457788888887 78886 58999999999999997 458999999999999999999999999999999863
No 164
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.96 E-value=1.7e-08 Score=71.88 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=36.7
Q ss_pred EeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC
Q 030076 103 LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164 (183)
Q Consensus 103 i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~ 164 (183)
..+++|+++|+|+.++.+.. ++.||++++|+++++|.+..++
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~--------------------gv~Ig~~~vIgags~V~~~v~~ 112 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILP--------------------GVTIGDGAVIAAGAVVTKDVPP 112 (145)
T ss_pred cCCcEECCCCEECCCCEEeC--------------------CCEECCCCEECCCCEEccccCC
Confidence 35789999999999999987 8999999999999999876533
No 165
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.95 E-value=6.7e-09 Score=84.38 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=68.3
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEE
Q 030076 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (183)
Q Consensus 73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (183)
+.+.+.|++.+.+ .++.|+++|.|+.+ .+.+++|+++|.|++++.|. +++|++++.|
T Consensus 280 ~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~---------------------~sii~~~~~v 336 (361)
T TIGR02091 280 LPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVE---------------------DSVIMGDVGI 336 (361)
T ss_pred CCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEe---------------------eeEEeCCCEE
Confidence 3445555566655 34588999999876 88899999999999999998 8999999999
Q ss_pred CCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 153 GANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 153 g~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+.++.+. + ++||+++.|++++.|++
T Consensus 337 ~~~~~l~-~----~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 337 GRGAVIR-N----AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CCCCEEe-e----eEECCCCEECCCCEeCC
Confidence 9999985 4 99999999999999874
No 166
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.93 E-value=1.7e-08 Score=74.72 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=41.7
Q ss_pred ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCCE
Q 030076 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHSK 173 (183)
Q Consensus 105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~~ 173 (183)
.++||++|+||+++.|.+ +++||++++||+++++.++.++ .++.|..+.
T Consensus 124 ~v~IG~~vwIG~~a~Ilp--------------------GV~IG~gavigagsVVtkdvp~~~iv~G~Pa~ 173 (190)
T COG0110 124 PVTIGEDVWIGAGAVILP--------------------GVTIGEGAVIGAGSVVTKDVPPYGIVAGNPAR 173 (190)
T ss_pred CeEECCCeEEcCccEECC--------------------CEEECCCcEEeeCCEEeCccCCCeEEeCCcce
Confidence 489999999999999998 9999999999999999988743 455555553
No 167
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9.4e-09 Score=79.69 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=77.8
Q ss_pred cEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceece
Q 030076 65 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 144 (183)
Q Consensus 65 ~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 144 (183)
+.|..+++|.+++++.+.+.|++++.||.++.||++++|.+|+|-+++.|..|+.+. .+
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---------------------~s 341 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---------------------HS 341 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEE---------------------ee
Confidence 457778888888888888888888999999999999999999999999999999998 78
Q ss_pred EECCCCEECCCcEEcCC-C--------CCCeEECCCCEECCCCeEee
Q 030076 145 RIGNHVEIGANSCIDRG-S--------WRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 145 ~Ig~~~~Ig~~~~v~~g-~--------~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+||.++.||.-+.+..- + ...|+.|+.+.+++.+.|-+
T Consensus 342 Iigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~ 388 (407)
T KOG1460|consen 342 IIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLN 388 (407)
T ss_pred eecccccccceeeecccccccCCCCCcceeEEecccceecceeEEee
Confidence 99999999977766322 1 12367777777776666544
No 168
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.87 E-value=1.7e-08 Score=82.30 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECC
Q 030076 75 ANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154 (183)
Q Consensus 75 ~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~ 154 (183)
+.+.|++++.| .++.||++|.|+ +.|.+++|+++|.|++++.|. .++|++++.|++
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~---------------------~sii~~~~~I~~ 332 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIK---------------------NCIIMQRTVIGE 332 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEE---------------------eeEEeCCCEECC
Confidence 56666666766 456888889996 468899999999999999997 799999999999
Q ss_pred CcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 155 NSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 155 ~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
++.+.. ++||++++|++++.+
T Consensus 333 ~~~i~~-----~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 333 GAHLEN-----VIIDKDVVIEPNVKI 353 (369)
T ss_pred CCEEEE-----EEECCCCEECCCCEe
Confidence 998853 788888888887766
No 169
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.86 E-value=2.3e-08 Score=83.11 Aligned_cols=69 Identities=28% Similarity=0.504 Sum_probs=61.1
Q ss_pred cceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076 51 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 51 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~ 122 (183)
.++.|++++.| +++.|. +++|+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.|++
T Consensus 326 ~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 326 INSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGE 394 (425)
T ss_pred EeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEeeEEECCCCEECCCCEECC
Confidence 35778888888 677775 79999999999999995 55999999999999999999999999999999985
No 170
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.85 E-value=1.3e-08 Score=75.73 Aligned_cols=35 Identities=31% Similarity=0.299 Sum_probs=32.6
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF 182 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~ 182 (183)
+ .||+|+|||++++|.++ +.||+|++|++||+|.+
T Consensus 201 P-~Igd~vliGaGvtILgn----V~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 201 P-KIGDNVLIGAGVTILGN----VTIGEGAVIAAGSVVLK 235 (269)
T ss_pred C-cccCCeEEccccEEeCC----eeECCCcEEeccceEEe
Confidence 5 89999999999999988 99999999999999853
No 171
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.84 E-value=5.5e-09 Score=81.87 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=76.2
Q ss_pred ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc
Q 030076 61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ 140 (183)
Q Consensus 61 i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (183)
+..++.|..++.+.+-..+|++|.|+++++||.+|.|+++++|.+|.|..+.++...+.|.
T Consensus 255 ~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~------------------- 315 (371)
T KOG1322|consen 255 LLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEIS------------------- 315 (371)
T ss_pred ccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHH-------------------
Confidence 3344555555666666666677777777788888999999999999999999999999998
Q ss_pred eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076 141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV 180 (183)
Q Consensus 141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v 180 (183)
.+++|.++.||-++.+... ++||++.+|.+-.++
T Consensus 316 --s~ivg~~~~IG~~~~id~~----a~lG~nV~V~d~~~v 349 (371)
T KOG1322|consen 316 --SSIVGWNVPIGIWARIDKN----AVLGKNVIVADEDYV 349 (371)
T ss_pred --hhhccccccccCceEEecc----cEeccceEEeccccc
Confidence 7888999999999999877 999999988876665
No 172
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.78 E-value=5.2e-08 Score=85.38 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=22.9
Q ss_pred ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
.++||++|.||.++.|.+ ++.||+++.|++++.+.+|
T Consensus 160 ~i~IG~~~~IG~~s~I~~--------------------g~~Igd~a~vgagS~V~~g 196 (695)
T TIGR02353 160 PVTLGRDAFIGTRSTLDI--------------------DTSIGDGAQLGHGSALQGG 196 (695)
T ss_pred CcEECCCcEECCCCEEcC--------------------CCEECCCCEECCCCEecCC
Confidence 346666666666666655 5666666666666666553
No 173
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.77 E-value=1.3e-08 Score=70.55 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=42.1
Q ss_pred CcEECCCcEECCCCEECC---CCEECCCcEECCCcEEe-------------ceEECCCCEECCCcEECC
Q 030076 70 KAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALS-------------NCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 70 ~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~Ig~~~~i~~ 122 (183)
|..+.+.+.|.++++|++ ++.+|..|.+++++.|+ +..||++++|+.++.+..
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA 101 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA 101 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh
Confidence 556777888888888876 56888888888888884 467888888888888875
No 174
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.72 E-value=9.9e-08 Score=83.64 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=27.3
Q ss_pred eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
.+++||++|+||+++.+.+ ++.||+++.|++++.+.+|
T Consensus 644 ~~v~IG~~~~IG~~a~V~~--------------------g~~IGd~a~Ig~~SvV~~g 681 (695)
T TIGR02353 644 DTVTIGDGATLGPGAIVLY--------------------GVVMGEGSVLGPDSLVMKG 681 (695)
T ss_pred CCeEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEEcCC
Confidence 4567777777777777765 6777777777777777665
No 175
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.59 E-value=7.8e-08 Score=67.22 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=19.9
Q ss_pred CCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEE
Q 030076 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVAL 103 (183)
Q Consensus 56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i 103 (183)
.+++.+...+.|.+.+.|+++|.|.+.+++. +..+||+|+.|.+.+.|
T Consensus 12 ap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i 62 (190)
T KOG4042|consen 12 APSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVI 62 (190)
T ss_pred cCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHH
Confidence 3333333333333334444444444444332 12345555555555544
No 176
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.45 E-value=2.1e-07 Score=65.13 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=36.6
Q ss_pred EccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEECC-------------CCEECCCcEECCCcEEece
Q 030076 49 FHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVVGP-------------AVTIGQSTNIGFNVALSNC 106 (183)
Q Consensus 49 i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I~~-------------~~~Ig~~~~Ig~~~~i~~~ 106 (183)
+...+.|.+.+.|.++|+++|.+ +||+|+.|++.+.|.+ .-+||.+-...=+|...-.
T Consensus 17 VCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~ 96 (190)
T KOG4042|consen 17 VCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAK 96 (190)
T ss_pred EEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhh
Confidence 33344555666667777776655 3455555555555533 1133433333333333334
Q ss_pred EECCCCEECCCcEECC
Q 030076 107 IIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 107 ~I~~~~~Ig~~~~i~~ 122 (183)
.+|++..|+..+++++
T Consensus 97 kvGd~NVieskayvg~ 112 (190)
T KOG4042|consen 97 KVGDRNVIESKAYVGD 112 (190)
T ss_pred hhcCcceEeeeeEecC
Confidence 4555555555555554
No 177
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.34 E-value=6.6e-07 Score=47.45 Aligned_cols=33 Identities=42% Similarity=0.523 Sum_probs=22.8
Q ss_pred ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
++.||++|+|++++.+ | +.||+++.|++|++|.
T Consensus 1 pv~IG~~~~ig~~~~i--g----i~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--G----ITIGDGVIIGAGVVIT 33 (34)
T ss_dssp TEEE-TTEEE-TT-EE--T----SEE-TTEEE-TTEEEE
T ss_pred CeEECCCEEECccccc--C----CEEcCCCEECCCCEEc
Confidence 3678888888888887 4 8888888888888875
No 178
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.24 E-value=1.1e-06 Score=47.12 Aligned_cols=34 Identities=44% Similarity=0.657 Sum_probs=23.5
Q ss_pred eEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076 144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181 (183)
Q Consensus 144 ~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~ 181 (183)
+.|+++++|++++.+.++ +.||+++.|++++.|+
T Consensus 2 ~~Ig~~~~i~~~~~i~~~----~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGG----VVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETT----EEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCC----CEECCCCEEcCCCEEC
Confidence 566777777777777766 7777777777777765
No 179
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.20 E-value=8.9e-06 Score=61.08 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=50.8
Q ss_pred cEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCC
Q 030076 71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 150 (183)
Q Consensus 71 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 150 (183)
++..+++.||+++.+.-. ++++...+|+++.|.+.++.+++.|+.+|.+.. +++.++++
T Consensus 17 ivv~gdViIG~nS~l~~~-V~g~~iivge~v~i~Gdiva~diridmw~kv~g--------------------NV~ve~da 75 (277)
T COG4801 17 IVVKGDVIIGKNSMLKYG-VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTG--------------------NVIVENDA 75 (277)
T ss_pred EEEeccEEEcccceeeee-eeeeeEEeccCcEEeeeEEecceeeeeeeEeec--------------------cEEEcCce
Confidence 345556666677777555 778888888888888878888888888888876 67777777
Q ss_pred EECCCcEEcCC
Q 030076 151 EIGANSCIDRG 161 (183)
Q Consensus 151 ~Ig~~~~v~~g 161 (183)
.||+.+.|..-
T Consensus 76 yiGE~~sI~gk 86 (277)
T COG4801 76 YIGEFSSIKGK 86 (277)
T ss_pred EEeccceeeee
Confidence 77777766543
No 180
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.09 E-value=2.5e-06 Score=45.72 Aligned_cols=32 Identities=44% Similarity=0.721 Sum_probs=13.1
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076 72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103 (183)
Q Consensus 72 ~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i 103 (183)
.|++++.|++++.|.+++.|++++.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 33444444444444444444444444444443
No 181
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.00 E-value=1.4e-05 Score=42.35 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=11.3
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076 72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103 (183)
Q Consensus 72 ~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i 103 (183)
.||++|.|++++.| ++.|+++|.|++++.|
T Consensus 3 ~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 34444444444444 2444444444444443
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.55 E-value=0.00035 Score=52.71 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=54.9
Q ss_pred CCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCcc
Q 030076 57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 135 (183)
Q Consensus 57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~ 135 (183)
+.+.|++++.+... ++++.+.+++++.|.+. ++..++.|...|.+ .+++.++++.||..+.|..
T Consensus 21 gdViIG~nS~l~~~-V~g~~iivge~v~i~Gd-iva~diridmw~kv~gNV~ve~dayiGE~~sI~g------------- 85 (277)
T COG4801 21 GDVIIGKNSMLKYG-VVGEEIIVGERVRIYGD-IVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG------------- 85 (277)
T ss_pred ccEEEcccceeeee-eeeeeEEeccCcEEeee-EEecceeeeeeeEeeccEEEcCceEEeccceeee-------------
Confidence 34444444444322 45777778888888655 66677888777777 4566777777777777765
Q ss_pred ccCCceeceEECCCCEECCCcEEcCC
Q 030076 136 LKKPQLLNARIGNHVEIGANSCIDRG 161 (183)
Q Consensus 136 ~~~~~~~~~~Ig~~~~Ig~~~~v~~g 161 (183)
..++..+--+|+.+.|..|
T Consensus 86 -------kl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 86 -------KLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred -------eEEEecccccccceEEecC
Confidence 5666666777777777665
No 183
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=92.03 E-value=0.51 Score=39.42 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=35.4
Q ss_pred EECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076 78 CIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (183)
Q Consensus 78 ~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~ 122 (183)
.+.+.+.|- ++++..++.+++++.|.+|.++.++.||.++.|..
T Consensus 275 ~~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 275 DSEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG 318 (414)
T ss_pred ccCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence 344555553 45888889999999999999999999999999985
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=91.51 E-value=0.44 Score=39.82 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=31.8
Q ss_pred CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCC
Q 030076 70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSC 112 (183)
Q Consensus 70 ~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~ 112 (183)
++.+.+++.++++++|+ ++.++.++.||++|.|.++-+.+..
T Consensus 284 nSil~~~~~vg~~svIe-~s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred EeEecCCceECCCCEEE-eeecCCCCEECCCCEEECCcccccc
Confidence 66778888888888884 4488888888888888777554443
No 185
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=87.64 E-value=1.1 Score=29.43 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=8.7
Q ss_pred CcEECCCcEEeceEECCCCEE
Q 030076 94 STNIGFNVALSNCIIGDSCII 114 (183)
Q Consensus 94 ~~~Ig~~~~i~~~~I~~~~~I 114 (183)
...|+.++.+...+-.+++.+
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEE
Confidence 344444444443333333333
No 186
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=78.40 E-value=14 Score=26.31 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=8.9
Q ss_pred cEEccceEECCCcEECCCcEE
Q 030076 47 GIFHQSACIDSTVLIEVGAIV 67 (183)
Q Consensus 47 ~~i~~~~~i~~~~~i~~~~~i 67 (183)
..+..++.+.+...+.....|
T Consensus 24 tli~~g~~f~G~l~f~~~l~I 44 (146)
T COG1664 24 TLIGAGTTFKGELVFEGPLRI 44 (146)
T ss_pred eEEecCCEEEEEEEecceEEE
Confidence 344444444444444433333
No 187
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=74.87 E-value=5.8 Score=36.80 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=22.9
Q ss_pred CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceE-ECCCCEECCCcEEC
Q 030076 70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIG 121 (183)
Q Consensus 70 ~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~-I~~~~~Ig~~~~i~ 121 (183)
++++..++.+++++..-+++.|+.+..||+++.|.++- ...+..|.+++.+.
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~ 388 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCID 388 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEE
Confidence 44444444444443311333555555555555554442 11224444444443
No 188
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=64.08 E-value=23 Score=23.04 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=5.7
Q ss_pred CcEECCCCEECCC
Q 030076 76 NVCIGSGTVVGPA 88 (183)
Q Consensus 76 ~~~I~~~~~I~~~ 88 (183)
.+.|++++.+.++
T Consensus 36 ~v~i~~~~~v~G~ 48 (101)
T PF04519_consen 36 KVKIGGNGEVKGD 48 (101)
T ss_pred EEEEcCCCEEEEE
Confidence 4444444444333
No 189
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=62.93 E-value=0.97 Score=35.45 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.0
Q ss_pred hhhhhHHHhhhhhhcccchhhh
Q 030076 14 KTYKQDFGRFCNLFSTKSDIES 35 (183)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~ 35 (183)
+++|.|.++...++.++..+..
T Consensus 216 ~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 216 RGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred cceEEecCChhhHHHHHHHHHH
Confidence 4588888888888888776654
No 190
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=58.32 E-value=25 Score=32.81 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=27.9
Q ss_pred ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEE
Q 030076 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII 108 (183)
Q Consensus 52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I 108 (183)
++.+++++.++++...-+++.|++++.|+++++|.+--...-+..|-+++.|...-+
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl 392 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPV 392 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEc
Confidence 445555555555544445566666666666666632211111344555555543333
No 191
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=35.93 E-value=43 Score=28.18 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=7.1
Q ss_pred ECCCcEECCCCEECCC
Q 030076 73 LGANVCIGSGTVVGPA 88 (183)
Q Consensus 73 ig~~~~I~~~~~I~~~ 88 (183)
+.++|..|.++.+.+.
T Consensus 450 VsGdV~FGknV~LkGt 465 (498)
T KOG2638|consen 450 VSGDVWFGKNVSLKGT 465 (498)
T ss_pred EeccEEeccceEEeeE
Confidence 3444444444444433
No 192
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=30.69 E-value=62 Score=27.30 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=25.2
Q ss_pred eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEeeC
Q 030076 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC 183 (183)
Q Consensus 142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~~ 183 (183)
+++..|+|+.+...++|-....+.-.|.+|++..+..+.|++
T Consensus 452 GdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~ 493 (498)
T KOG2638|consen 452 GDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNL 493 (498)
T ss_pred ccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccc
Confidence 356666666665555554443455667777777777666653
Done!