BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030077
MATVSLSSTLYSTYRTKLHTSKVMPSCSLTIPIRTFNFQIKLALKNKKQKWGFNGMRVLR
SSEEETLITEQETEAVEETVAADEQQPVAVPVSPSDKLTMYFQADGAMNETAIPAVTQAL
QGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFDDEEE
VLV

High Scoring Gene Products

Symbol, full name Information P value
AT5G14910 protein from Arabidopsis thaliana 9.5e-34

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030077
        (183 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2147795 - symbol:AT5G14910 species:3702 "Arabi...   367  9.5e-34   1


>TAIR|locus:2147795 [details] [associations]
            symbol:AT5G14910 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] InterPro:IPR006121
            PROSITE:PS50846 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0046872 GO:GO:0009941 GO:GO:0009535
            GO:GO:0030001 SUPFAM:SSF55008 EMBL:AY039598 EMBL:AY056094
            EMBL:AY086080 IPI:IPI00546372 RefSeq:NP_568306.1 UniGene:At.9884
            IntAct:Q93VK7 STRING:Q93VK7 PaxDb:Q93VK7 PRIDE:Q93VK7 ProMEX:Q93VK7
            EnsemblPlants:AT5G14910.1 GeneID:831343 KEGG:ath:AT5G14910
            TAIR:At5g14910 eggNOG:NOG277196 HOGENOM:HOG000241361
            InParanoid:Q93VK7 OMA:NFRTRAI PhylomeDB:Q93VK7
            ProtClustDB:CLSN2689681 Genevestigator:Q93VK7 Uniprot:Q93VK7
        Length = 178

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 73/96 (76%), Positives = 86/96 (89%)

Query:    88 VAVPVSPSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147
             V+VPVSPSD LTM+FQADG +NE AIP VT+ALQ  +G+S+LKVQV EG+A VEL KQTT
Sbjct:    83 VSVPVSPSDMLTMFFQADGTLNEAAIPNVTRALQDIDGVSNLKVQVSEGVAVVELLKQTT 142

Query:   148 VQATGVAANLVEIIQGSGFKLQTLNLSFDDEEEVLV 183
             VQATGVA+NLVE IQG+GFKLQTLNLSF+D++EVLV
Sbjct:   143 VQATGVASNLVETIQGAGFKLQTLNLSFEDDDEVLV 178


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183       149   0.00078  104 3  11 22  0.48    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  114 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.04u 0.13s 12.17t   Elapsed:  00:00:00
  Total cpu time:  12.04u 0.13s 12.17t   Elapsed:  00:00:00
  Start:  Fri May 10 07:10:01 2013   End:  Fri May 10 07:10:01 2013

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