BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030077
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
           Geobacillus Kaustophilus Hta426
 pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
           Geobacillus Kaustophilus Hta426
          Length = 257

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 90  VPVSPSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDL 129
           +P SP D L +    + A  E AIP +T A+ G   I+ L
Sbjct: 178 MPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRL 217


>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Adp And Mn2+
 pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Adp And Mn2+
          Length = 347

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 109 NETAIPAVT--QALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAA 155
           N+T   AV    A  G EG+S+    ++  IATV   + T + ATG  A
Sbjct: 298 NQTGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAATGDVA 346


>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
 pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
          Length = 346

 Score = 26.9 bits (58), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 109 NETAIPAVT--QALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAA 155
           N+T   AV    A  G EG+S+    ++  IATV   + T + ATG  A
Sbjct: 297 NQTGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAATGDVA 345


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,656,294
Number of Sequences: 62578
Number of extensions: 102360
Number of successful extensions: 218
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 4
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)