BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030077
         (183 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2
           SV=3
          Length = 852

 Score = 32.3 bits (72), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 71  QETEAVEETVAADEQQPVAVPVSPSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLK 130
           ++   + ET+AA+    VA   S  D   +       + +  I +V   L+  E +    
Sbjct: 98  EDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAP 157

Query: 131 VQVIEGIATVELKKQTTVQATGV----AANLVEIIQGSGFKLQTLNLSFD 176
           + +++  +   ++KQ    A  V    A +L+EI+ G GFK++ L   FD
Sbjct: 158 LDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKELVDPFD 207


>sp|B8I799|AZOR_CLOCE FMN-dependent NADH-azoreductase OS=Clostridium cellulolyticum
           (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=azoR
           PE=3 SV=1
          Length = 213

 Score = 31.6 bits (70), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 78  ETVAADEQQPVAVPVSPSDKLTMYFQADGAMNETAI-PAVTQALQGTE------GISDLK 130
           +T+A DE +P  + ++  ++  +Y Q+ GA     I PA+ + L          GIS  +
Sbjct: 123 KTIAFDENKPYGL-LNDKERTFIYVQSSGANIPWIIRPALNKGLNYVHDIIRFLGISKFE 181

Query: 131 VQVIEGIATVELKKQTTVQ 149
             +++G  T EL++Q  ++
Sbjct: 182 ELLVDGTGTTELERQEAIE 200


>sp|Q5KY94|AROD_GEOKA 3-dehydroquinate dehydratase OS=Geobacillus kaustophilus (strain
           HTA426) GN=aroD PE=1 SV=1
          Length = 257

 Score = 31.2 bits (69), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 53  FNGMRVLRSSEEETLITEQETEAVEETVAADEQQPVAVPVSPSDKLTMYFQADGAMNETA 112
           F+G     +  +ETL+ +       E   AD  +   +P SP D L +    + A  E A
Sbjct: 149 FDG-----TPRKETLLADMRQA---ERYGADIAKVAVMPKSPEDVLVLLQATEEARRELA 200

Query: 113 IPAVTQALQGTEGISDL 129
           IP +T A+ G   I+ L
Sbjct: 201 IPLITMAMGGLGAITRL 217


>sp|Q24K03|THUM1_BOVIN THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2
           SV=1
          Length = 357

 Score = 30.8 bits (68), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 95  SDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147
            DK +    A+G  N+  +P  ++ L  TE IS+  V V EG+A  EL  Q T
Sbjct: 296 GDKSSQNDPAEGKNNQQVVPENSEELGPTESISETHV-VNEGVAKPELASQVT 347


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.126    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,456,333
Number of Sequences: 539616
Number of extensions: 2099523
Number of successful extensions: 5815
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5808
Number of HSP's gapped (non-prelim): 31
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)