Query 030077
Match_columns 183
No_of_seqs 56 out of 58
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 12:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxs_X Copper-transporting ATP 99.7 1.1E-16 3.8E-21 104.7 7.9 70 99-173 3-72 (74)
2 4a4j_A Pacszia, cation-transpo 99.7 3.2E-16 1.1E-20 101.0 7.7 67 99-171 3-69 (69)
3 2ldi_A Zinc-transporting ATPas 99.6 5.7E-15 1.9E-19 91.7 7.8 67 99-170 4-70 (71)
4 1cpz_A Protein (COPZ); copper 99.6 5.2E-15 1.8E-19 92.2 7.3 66 100-170 2-67 (68)
5 1yg0_A COP associated protein; 99.6 2.6E-15 8.9E-20 93.1 5.8 65 99-169 2-66 (66)
6 2xmw_A PACS-N, cation-transpor 99.6 6E-15 2E-19 92.6 7.3 67 99-171 4-70 (71)
7 2l3m_A Copper-ION-binding prot 99.6 6.4E-15 2.2E-19 93.1 7.2 66 98-168 5-70 (71)
8 1kvi_A Copper-transporting ATP 99.6 9.3E-15 3.2E-19 95.0 8.1 68 99-171 9-76 (79)
9 3fry_A Probable copper-exporti 99.6 5.9E-15 2E-19 97.7 7.1 64 99-172 6-69 (73)
10 1osd_A MERP, hypothetical prot 99.6 7E-15 2.4E-19 92.8 7.2 66 99-169 4-69 (72)
11 3cjk_B Copper-transporting ATP 99.6 1.1E-14 3.7E-19 93.6 8.0 68 98-170 2-69 (75)
12 2qif_A Copper chaperone COPZ; 99.6 8.8E-15 3E-19 89.7 7.0 66 99-169 3-68 (69)
13 1aw0_A Menkes copper-transport 99.6 8.1E-15 2.8E-19 92.5 6.7 67 99-170 4-70 (72)
14 1mwy_A ZNTA; open-faced beta-s 99.6 1.5E-14 5E-19 93.1 7.7 65 99-170 4-68 (73)
15 1opz_A Potential copper-transp 99.5 3.2E-14 1.1E-18 90.0 8.5 69 97-170 5-73 (76)
16 3iwl_A Copper transport protei 99.5 1.1E-14 3.9E-19 95.4 6.6 63 99-171 3-65 (68)
17 2kt2_A Mercuric reductase; nme 99.5 1.1E-14 3.9E-19 91.8 6.2 63 101-169 3-65 (69)
18 1yjr_A Copper-transporting ATP 99.5 1.5E-14 5.1E-19 91.9 6.6 68 100-172 6-73 (75)
19 1q8l_A Copper-transporting ATP 99.5 2.8E-14 9.5E-19 95.5 7.7 68 97-169 8-75 (84)
20 2roe_A Heavy metal binding pro 99.5 9.8E-15 3.3E-19 92.7 5.0 64 100-171 2-65 (66)
21 1y3j_A Copper-transporting ATP 99.5 2.3E-14 7.7E-19 93.1 5.2 67 99-170 4-70 (77)
22 1fvq_A Copper-transporting ATP 99.5 3E-14 1E-18 89.9 5.5 67 99-171 3-69 (72)
23 2g9o_A Copper-transporting ATP 99.5 5.1E-14 1.8E-18 97.0 6.8 69 99-172 4-75 (90)
24 2xmm_A SSR2857 protein, ATX1; 99.5 3.4E-14 1.2E-18 87.5 4.1 61 100-168 3-63 (64)
25 2ofg_X Zinc-transporting ATPas 99.5 2E-13 7E-18 97.9 8.6 74 98-176 8-81 (111)
26 1jww_A Potential copper-transp 99.5 1E-13 3.4E-18 89.4 5.8 68 99-171 4-71 (80)
27 2ew9_A Copper-transporting ATP 99.5 1E-13 3.5E-18 99.2 6.3 67 98-169 80-146 (149)
28 2kyz_A Heavy metal binding pro 99.4 5.6E-14 1.9E-18 89.6 4.3 63 99-171 2-64 (67)
29 1p6t_A Potential copper-transp 99.4 1.9E-13 6.4E-18 98.7 7.4 69 99-172 75-143 (151)
30 1cc8_A Protein (metallochapero 99.4 2.9E-13 9.9E-18 88.7 7.4 65 98-171 5-70 (73)
31 2k2p_A Uncharacterized protein 99.4 2.2E-13 7.5E-18 94.5 4.1 62 99-168 23-84 (85)
32 2kkh_A Putative heavy metal tr 99.4 1.1E-12 3.8E-17 90.0 7.3 67 99-170 17-83 (95)
33 2rop_A Copper-transporting ATP 99.3 1.9E-12 6.3E-17 99.9 7.6 68 98-170 122-189 (202)
34 2crl_A Copper chaperone for su 99.3 4.2E-12 1.4E-16 90.3 8.5 74 89-171 10-83 (98)
35 2ew9_A Copper-transporting ATP 99.3 2.7E-12 9.4E-17 91.8 7.5 67 99-170 5-71 (149)
36 2aj0_A Probable cadmium-transp 99.2 6.8E-12 2.3E-16 80.4 4.7 58 99-168 4-61 (71)
37 1p6t_A Potential copper-transp 99.2 1.1E-10 3.8E-15 84.1 9.0 66 98-168 6-71 (151)
38 2rop_A Copper-transporting ATP 99.2 4.4E-11 1.5E-15 92.2 7.0 65 99-168 21-88 (202)
39 1qup_A Superoxide dismutase 1 99.0 6.8E-10 2.3E-14 91.2 7.9 65 97-170 5-69 (222)
40 3j09_A COPA, copper-exporting 99.0 3.5E-10 1.2E-14 105.2 6.4 67 99-170 3-69 (723)
41 1jk9_B CCS, copper chaperone f 99.0 1.3E-09 4.4E-14 91.4 7.9 67 96-171 5-71 (249)
42 3hz7_A Uncharacterized protein 85.5 1.1 3.6E-05 31.9 4.3 54 102-171 4-59 (87)
43 3lvj_C Sulfurtransferase TUSA; 79.8 2.4 8.2E-05 29.3 4.3 58 100-172 11-68 (82)
44 1jdq_A TM006 protein, hypothet 77.7 3 0.0001 30.2 4.4 57 100-171 27-83 (98)
45 1je3_A EC005, hypothetical 8.6 77.0 2.9 9.9E-05 30.4 4.1 57 100-171 28-84 (97)
46 1u6f_A Tcubp1, RNA-binding pro 76.4 5.8 0.0002 28.1 5.5 54 94-147 37-96 (139)
47 3bpd_A Uncharacterized protein 74.6 8.3 0.00028 29.3 6.2 56 109-171 17-79 (100)
48 3md1_A Nuclear and cytoplasmic 68.2 20 0.00068 22.7 7.3 49 99-147 1-55 (83)
49 1uwd_A Hypothetical protein TM 67.0 4 0.00014 28.9 2.9 38 97-134 43-83 (103)
50 3cq1_A Putative uncharacterize 66.2 4.3 0.00015 28.8 2.9 22 113-134 61-82 (103)
51 1wg1_A KIAA1579 protein, homol 66.1 15 0.00051 24.1 5.5 72 101-179 7-78 (88)
52 1pav_A Hypothetical protein TA 65.5 2.4 8.2E-05 28.7 1.4 55 101-170 8-62 (78)
53 2jsx_A Protein NAPD; TAT, proo 65.1 9.1 0.00031 27.7 4.5 58 111-176 17-77 (95)
54 2rrl_A FLIK, flagellar HOOK-le 64.7 8.6 0.00029 31.1 4.7 54 125-178 99-155 (169)
55 2raq_A Conserved protein MTH88 63.8 28 0.00097 26.2 7.1 62 102-171 11-79 (97)
56 2ytc_A PRE-mRNA-splicing facto 63.2 12 0.00042 23.9 4.5 48 100-147 13-60 (85)
57 2f06_A Conserved hypothetical 63.2 23 0.00077 25.6 6.4 60 102-169 75-136 (144)
58 4f3q_A Transcriptional regulat 57.6 9 0.00031 32.5 3.8 50 116-175 155-204 (247)
59 3lno_A Putative uncharacterize 57.5 6.3 0.00022 28.4 2.5 38 97-134 45-86 (108)
60 2x1f_A MRNA 3'-END-processing 57.0 34 0.0012 22.5 6.0 70 102-177 5-80 (96)
61 2x3d_A SSO6206; unknown functi 56.7 60 0.0021 24.4 8.8 63 102-171 9-78 (96)
62 1x4e_A RNA binding motif, sing 56.4 36 0.0012 21.7 7.0 69 101-175 7-81 (85)
63 2cpj_A Non-POU domain-containi 56.3 41 0.0014 22.2 6.5 70 101-176 17-86 (99)
64 1owx_A Lupus LA protein, SS-B, 56.0 11 0.00036 28.5 3.6 63 101-169 20-84 (121)
65 1mw7_A Hypothetical protein HP 55.7 19 0.00066 30.4 5.5 49 116-175 155-203 (240)
66 2xnq_A Nuclear polyadenylated 55.4 25 0.00087 23.7 5.2 45 101-147 24-69 (97)
67 2hiy_A Hypothetical protein; C 55.4 4.9 0.00017 32.0 1.7 59 113-176 24-83 (183)
68 2la4_A Nuclear and cytoplasmic 53.0 38 0.0013 22.4 5.7 49 99-147 27-75 (101)
69 1x4g_A Nucleolysin TIAR; struc 52.3 37 0.0013 23.0 5.6 71 100-176 26-96 (109)
70 2hvz_A Splicing factor, argini 52.2 40 0.0014 22.3 5.7 70 101-176 2-72 (101)
71 2jvo_A Nucleolar protein 3; nu 52.2 55 0.0019 22.5 6.6 69 100-176 32-100 (108)
72 3ex7_B RNA-binding protein 8A; 51.2 32 0.0011 23.7 5.3 48 100-147 23-76 (126)
73 1kon_A Protein YEBC, YEBC; alp 50.1 14 0.00047 31.5 3.8 49 117-175 155-203 (249)
74 1b7f_A Protein (SXL-lethal pro 48.2 66 0.0023 22.3 6.6 60 101-166 91-156 (168)
75 2dnh_A Bruno-like 5, RNA bindi 47.6 58 0.002 21.5 6.9 48 100-147 16-68 (105)
76 1lfp_A Hypothetical protein AQ 46.8 21 0.00072 30.3 4.4 49 116-175 153-201 (249)
77 2dnq_A RNA-binding protein 4B; 46.0 58 0.002 21.1 7.7 47 99-147 8-54 (90)
78 2err_A Ataxin-2-binding protei 45.9 60 0.002 22.2 6.0 50 98-147 28-81 (109)
79 2dt9_A Aspartokinase; protein- 45.3 44 0.0015 25.0 5.6 71 97-171 59-129 (167)
80 2fgc_A Acetolactate synthase, 45.0 1.3E+02 0.0043 24.6 9.8 75 95-172 68-144 (193)
81 1gh8_A Translation elongation 44.9 31 0.0011 25.0 4.5 40 93-134 46-85 (89)
82 2dgv_A HnRNP M, heterogeneous 44.4 61 0.0021 20.8 7.2 70 101-176 10-83 (92)
83 2cpz_A CUG triplet repeat RNA- 44.1 72 0.0025 21.6 6.6 47 101-147 27-79 (115)
84 2fy1_A RNA-binding motif prote 43.8 49 0.0017 23.0 5.3 47 101-147 9-60 (116)
85 4e6k_G BFD, bacterioferritin-a 43.7 10 0.00035 26.4 1.7 18 106-123 35-52 (73)
86 1x4c_A Splicing factor, argini 42.2 76 0.0026 21.4 6.0 69 99-177 15-91 (108)
87 2w7v_A General secretion pathw 42.0 61 0.0021 23.7 5.7 60 114-178 15-76 (95)
88 2yy3_A Elongation factor 1-bet 41.7 35 0.0012 24.9 4.3 39 93-133 48-87 (91)
89 2cq3_A RNA-binding protein 9; 41.1 75 0.0026 21.0 6.8 48 100-147 16-67 (103)
90 1okg_A Possible 3-mercaptopyru 40.6 17 0.00059 31.1 2.9 43 100-142 322-364 (373)
91 1why_A Hypothetical protein ri 40.4 70 0.0024 21.0 5.4 47 101-147 19-65 (97)
92 2la6_A RNA-binding protein FUS 40.3 77 0.0026 20.8 6.2 49 99-147 13-75 (99)
93 2do0_A HnRNP M, heterogeneous 39.6 84 0.0029 21.1 7.0 47 101-147 17-68 (114)
94 2d9p_A Polyadenylate-binding p 39.6 80 0.0027 20.8 6.7 69 101-175 17-89 (103)
95 1wf1_A RNA-binding protein RAL 39.5 85 0.0029 21.1 6.7 68 101-176 29-97 (110)
96 2gag_A Heterotetrameric sarcos 39.5 4.1 0.00014 39.1 -1.2 34 99-133 22-56 (965)
97 2yh0_A Splicing factor U2AF 65 39.2 1E+02 0.0035 22.0 7.5 70 101-176 116-191 (198)
98 2dgo_A Cytotoxic granule-assoc 39.1 87 0.003 21.1 6.9 48 100-147 16-69 (115)
99 1rk8_A CG8781-PA, CG8781-PA pr 39.0 1E+02 0.0036 22.4 6.7 48 100-147 73-126 (165)
100 4gwb_A Peptide methionine sulf 36.8 83 0.0028 25.2 6.2 45 111-160 10-69 (168)
101 3ulh_A THO complex subunit 4; 36.7 91 0.0031 20.6 6.6 48 100-147 30-82 (107)
102 1p1t_A Cleavage stimulation fa 36.5 89 0.0031 20.5 6.0 47 101-147 10-62 (104)
103 2cq1_A PTB-like protein L; RRM 35.2 1.1E+02 0.0038 21.2 6.3 69 101-175 17-87 (101)
104 1wex_A Hypothetical protein (r 35.1 1.1E+02 0.0038 21.2 7.0 70 101-176 17-88 (104)
105 2ywk_A Putative RNA-binding pr 35.0 91 0.0031 20.1 7.3 47 101-147 18-69 (95)
106 1b64_A Elongation factor 1-bet 34.8 59 0.002 23.6 4.6 38 93-132 48-86 (91)
107 1sjq_A Polypyrimidine tract-bi 34.7 80 0.0027 22.7 5.3 47 101-147 18-64 (105)
108 3bs9_A Nucleolysin TIA-1 isofo 34.6 87 0.003 19.8 6.9 48 100-147 7-60 (87)
109 1f60_B Elongation factor EEF1B 34.4 59 0.002 23.8 4.6 40 93-134 51-91 (94)
110 2div_A TRNA selenocysteine ass 34.3 64 0.0022 21.1 4.5 48 100-147 10-64 (99)
111 2khc_A Testis-specific RNP-typ 33.9 1E+02 0.0036 20.8 5.6 62 99-169 40-108 (118)
112 3md3_A Nuclear and cytoplasmic 32.8 1.2E+02 0.0041 20.8 7.1 48 100-147 88-141 (166)
113 1yj7_A ESCJ; mixed alpha/beta, 32.6 86 0.003 24.7 5.6 21 114-134 93-113 (171)
114 1p27_B RNA-binding protein 8A; 32.3 1.1E+02 0.0037 20.2 6.9 48 100-147 24-77 (106)
115 2do4_A Squamous cell carcinoma 32.2 1.1E+02 0.0037 20.1 6.9 46 102-147 20-70 (100)
116 2v50_A Multidrug resistance pr 32.0 39 0.0013 32.6 4.1 67 98-164 136-210 (1052)
117 3mdf_A Peptidyl-prolyl CIS-tra 31.8 96 0.0033 19.4 5.9 47 101-147 9-61 (85)
118 3cq1_A Putative uncharacterize 31.8 1E+02 0.0036 21.5 5.5 59 114-176 9-84 (103)
119 2wyq_A HHR23A, UV excision rep 31.7 72 0.0025 20.6 4.3 44 127-176 6-54 (85)
120 2cqc_A Arginine/serine-rich sp 30.6 1.1E+02 0.0037 19.6 6.8 46 102-147 18-69 (95)
121 2dgu_A Heterogeneous nuclear r 30.6 1E+02 0.0036 20.4 5.1 45 101-147 13-57 (103)
122 2e5h_A Zinc finger CCHC-type a 30.5 1E+02 0.0036 19.7 5.0 46 102-147 19-70 (94)
123 2ad9_A Polypyrimidine tract-bi 30.5 1.2E+02 0.0039 22.2 5.7 69 101-175 33-103 (119)
124 2fi0_A Conserved domain protei 30.4 29 0.001 23.9 2.3 16 154-169 63-78 (81)
125 2rs2_A Musashi-1, RNA-binding 30.1 1.1E+02 0.0038 20.8 5.3 60 101-169 27-92 (109)
126 1nu4_A U1A RNA binding domain; 30.0 68 0.0023 20.8 4.0 70 101-176 10-86 (97)
127 4a8x_A RNA-binding protein wit 29.3 1.1E+02 0.0037 19.2 5.9 47 101-147 6-59 (88)
128 2cph_A RNA binding motif prote 29.2 1.2E+02 0.004 20.0 5.1 60 100-168 16-84 (107)
129 2nyt_A Probable C->U-editing e 28.9 46 0.0016 26.8 3.5 63 97-172 84-146 (190)
130 1oo0_B CG8781-PA, drosophila Y 28.8 1.3E+02 0.0044 20.0 5.8 48 100-147 27-80 (110)
131 2jrs_A RNA-binding protein 39; 28.8 1.4E+02 0.0048 20.3 8.0 48 100-147 27-80 (108)
132 2kxn_B Transformer-2 protein h 28.6 1.4E+02 0.0049 21.1 5.9 46 102-147 49-100 (129)
133 1fvg_A Peptide methionine sulf 28.6 1E+02 0.0035 25.4 5.6 47 106-160 49-114 (199)
134 3bxo_A N,N-dimethyltransferase 28.1 42 0.0014 24.7 2.9 23 153-175 206-228 (239)
135 2cpe_A RNA-binding protein EWS 28.1 1.1E+02 0.0039 20.4 5.0 48 100-147 16-77 (113)
136 1h2v_Z 20 kDa nuclear CAP bind 27.9 1.4E+02 0.0048 21.3 5.7 47 101-147 41-93 (156)
137 1whw_A Hypothetical protein ri 27.7 1.3E+02 0.0044 19.6 5.8 48 100-147 9-62 (99)
138 3nmr_A Cugbp ELAV-like family 27.6 1.5E+02 0.0053 20.5 6.8 46 102-147 98-148 (175)
139 1whx_A Hypothetical protein ri 26.4 1.3E+02 0.0043 20.7 5.0 49 99-147 10-58 (111)
140 2cpf_A RNA binding motif prote 26.1 1.4E+02 0.0047 19.4 6.7 46 102-147 8-62 (98)
141 2cqb_A Peptidyl-prolyl CIS-tra 25.8 1.1E+02 0.0038 20.0 4.5 46 102-147 15-66 (102)
142 1x5u_A Splicing factor 3B subu 25.7 1.2E+02 0.0042 19.9 4.7 47 101-147 17-69 (105)
143 3pgw_A U1-A; protein-RNA compl 25.7 1.5E+02 0.0052 22.8 5.9 47 101-147 209-256 (282)
144 2joe_A Hypothetical lipoprotei 25.7 1.4E+02 0.0048 22.9 5.6 57 114-171 57-132 (139)
145 2ku7_A MLL1 PHD3-CYP33 RRM chi 25.5 1.1E+02 0.0039 20.9 4.7 48 100-147 64-117 (140)
146 1x4a_A Splicing factor, argini 25.4 1.5E+02 0.0052 19.7 5.7 48 100-147 23-73 (109)
147 2j89_A Methionine sulfoxide re 24.8 1.2E+02 0.0042 26.1 5.6 47 106-160 100-165 (261)
148 1x5s_A Cold-inducible RNA-bind 24.7 1.3E+02 0.0046 19.6 4.7 47 101-147 14-66 (102)
149 3d2l_A SAM-dependent methyltra 24.4 61 0.0021 23.9 3.2 24 153-176 202-225 (243)
150 3pfg_A N-methyltransferase; N, 24.3 46 0.0016 25.3 2.6 23 153-175 216-238 (263)
151 1x4h_A RNA-binding protein 28; 24.3 1.5E+02 0.005 19.6 4.9 47 101-147 17-69 (111)
152 1x5t_A Splicing factor 3B subu 24.3 1.3E+02 0.0045 19.3 4.6 47 101-147 7-60 (96)
153 1y8c_A S-adenosylmethionine-de 24.3 61 0.0021 23.8 3.2 23 153-175 204-226 (246)
154 2y9j_Y Lipoprotein PRGK, prote 24.2 46 0.0016 26.2 2.6 20 115-134 92-111 (170)
155 2kzr_A Ubiquitin thioesterase 24.1 57 0.0019 21.9 2.8 42 128-175 2-47 (86)
156 2qfj_A FBP-interacting repress 23.7 2.1E+02 0.0072 20.7 6.6 46 102-147 128-179 (216)
157 3bqh_A PILB, peptide methionin 23.7 1.4E+02 0.0049 24.4 5.6 47 106-160 8-73 (193)
158 1nwa_A Peptide methionine sulf 23.4 1.8E+02 0.0062 24.0 6.2 47 106-160 31-92 (203)
159 3sm3_A SAM-dependent methyltra 23.2 52 0.0018 24.0 2.6 20 153-172 186-205 (235)
160 2xs2_A Deleted in azoospermia- 22.9 1.7E+02 0.0056 19.2 7.9 62 98-169 8-74 (102)
161 2dnz_A Probable RNA-binding pr 22.5 1.6E+02 0.0055 18.9 6.8 47 101-147 7-59 (95)
162 1wf9_A NPL4 family protein; be 22.4 72 0.0025 22.5 3.2 40 129-174 10-51 (107)
163 2g4b_A Splicing factor U2AF 65 22.3 2E+02 0.0069 19.9 6.8 46 102-147 97-148 (172)
164 3ne5_A Cation efflux system pr 22.3 1.2E+02 0.0041 29.1 5.5 54 115-168 170-224 (1054)
165 4dx5_A Acriflavine resistance 22.0 49 0.0017 31.8 2.8 52 112-163 158-209 (1057)
166 2dhg_A TRNA selenocysteine ass 21.9 1.7E+02 0.006 19.1 6.2 47 101-147 11-63 (104)
167 3e8s_A Putative SAM dependent 21.3 60 0.0021 23.4 2.6 21 153-173 188-208 (227)
168 2cq4_A RNA binding motif prote 21.2 1.3E+02 0.0044 20.3 4.2 54 94-147 20-79 (114)
169 1ff3_A Peptide methionine sulf 21.1 1.7E+02 0.0058 24.3 5.6 47 106-160 48-113 (211)
170 3uhm_A UDP-3-O-[3-hydroxymyris 20.9 1.1E+02 0.0039 26.6 4.7 49 113-171 76-124 (299)
171 2lxf_A Uncharacterized protein 20.7 1.8E+02 0.0062 21.9 5.3 53 89-142 25-78 (121)
172 2dgt_A RNA-binding protein 30; 20.5 1.8E+02 0.0062 18.7 6.8 46 100-147 11-56 (92)
173 1x5o_A RNA binding motif, sing 20.2 2E+02 0.0069 19.2 6.7 47 101-147 27-78 (114)
No 1
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.68 E-value=1.1e-16 Score=104.70 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=63.8
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeec
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNL 173 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l 173 (183)
+..|+|+||+|.+|+.+|+++|.+++||.+++|++..+.++|++++... ..+.|.++|+++||++..++-
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~~~~ 72 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLV-----KEEDIKEEIEDAGFEAEILAE 72 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTC-----CHHHHHHHHHHHTCEEEEEEE
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHCCCceEEccC
Confidence 4569999999999999999999999999999999999999999988754 469999999999999877653
No 2
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.66 E-value=3.2e-16 Score=101.01 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=60.4
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
++.|+|+||+|.+|+.+|+++|.+++||.+++|++..+.++|.++...+ .+.|.++|+++||++.-|
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~------~~~i~~~i~~~Gy~~~~~ 69 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT------PQILTDAVERAGYHARVL 69 (69)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCC------HHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC------HHHHHHHHHHcCCceEeC
Confidence 4679999999999999999999999999999999999999999944444 699999999999998643
No 3
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=99.59 E-value=5.7e-15 Score=91.70 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=60.1
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
.+.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ....|.++|+++||++..
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~ 70 (71)
T 2ldi_A 4 TQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQV-----SEITIQERIAALGYTLAE 70 (71)
T ss_dssp EEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTC-----CTHHHHHHHHTTTCEEEC
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCCccC
Confidence 3469999999999999999999999999999999999999999987543 357899999999998764
No 4
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.58 E-value=5.2e-15 Score=92.17 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=59.6
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
+.|+++||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ..+.|.++|+++||++..
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANV-----QATEICQAINELGYQAEV 67 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHHTTSSCEEE
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCCccc
Confidence 358999999999999999999999999999999999999999987543 368899999999998753
No 5
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.58 E-value=2.6e-15 Score=93.08 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=59.1
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
.+.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|++++... ...|.++|+++||+++
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~------~~~i~~~i~~~G~~~~ 66 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPAT------QDLIKEALLDAGQEVV 66 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCC------HHHHHHHHHHHTCCCC
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCC------HHHHHHHHHHcCCCcC
Confidence 3569999999999999999999999999999999999999999987644 5899999999999863
No 6
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.58 E-value=6e-15 Score=92.60 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=58.9
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++.. ....|.++|+++||++..+
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~------~~~~i~~~i~~~G~~~~~~ 70 (71)
T 2xmw_A 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGET------TPQILTDAVERAGYHARVL 70 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---------CHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCC------CHHHHHHHHHHcCCCceeC
Confidence 356999999999999999999999999999999999999999998763 3689999999999987654
No 7
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.57 E-value=6.4e-15 Score=93.10 Aligned_cols=66 Identities=20% Similarity=0.446 Sum_probs=59.9
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
-++.|+|+||.|.+|+.+|+++|..++||.++.|++..+.+.|.+++... ....|.++|+++||++
T Consensus 5 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVV-----TLKDIVAVIEDQGYDV 70 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTS-----CHHHHHHHHHHTTCEE
T ss_pred EEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCCC
Confidence 35569999999999999999999999999999999999999999987544 4688999999999986
No 8
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.57 E-value=9.3e-15 Score=95.00 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=61.2
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ....|.++|+++||++..+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~~ 76 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQ-----TPKTLQEAIDDMGFDAVIH 76 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTC-----CHHHHHHHHHHHCCCEEEC
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCC-----CHHHHHHHHHHCCCceEec
Confidence 4569999999999999999999999999999999999999999987544 4688999999999987544
No 9
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5.9e-15 Score=97.69 Aligned_cols=64 Identities=14% Similarity=0.289 Sum_probs=58.8
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~ 172 (183)
+..|+|+||+|.+|+.+|+++|.+ +||.+++|++..+.++|+++ + .+.|.++|+++||++..+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~---~------~~~i~~~i~~~Gy~~~~~~ 69 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE---D------VDKYIKAVEAAGYQAKLRS 69 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG---G------HHHHHHHHHHTTCEEEECC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC---C------HHHHHHHHHHcCCceEecC
Confidence 356999999999999999999999 99999999999999999987 3 4899999999999987654
No 10
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.57 E-value=7e-15 Score=92.81 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=60.1
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ..+.|.++|+++||++.
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~ 69 (72)
T 1osd_A 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKT-----SVQKLTKATADAGYPSS 69 (72)
T ss_dssp EEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTC-----CHHHHHHHHHHTTCCCE
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHhcCCCeE
Confidence 4569999999999999999999999999999999999999999987544 46889999999999864
No 11
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.56 E-value=1.1e-14 Score=93.57 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
.++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ....|.++|+++||++.-
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~ 69 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQ-----TPKTLQEAIDDMGFDAVI 69 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCceEe
Confidence 45779999999999999999999999999999999999999999987544 368899999999998654
No 12
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.56 E-value=8.8e-15 Score=89.71 Aligned_cols=66 Identities=17% Similarity=0.373 Sum_probs=59.6
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
.+.|+|+||.|.+|+.+|+++|..++||.++.|++..+.+.|.+++... ....|.++|+++||++.
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~ 68 (69)
T 2qif_A 3 QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKV-----SVKDIADAIEDQGYDVA 68 (69)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHTTCEEC
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCCcc
Confidence 3569999999999999999999999999999999999999999987544 46889999999999863
No 13
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.56 E-value=8.1e-15 Score=92.54 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=60.5
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
.+.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ..+.|.++|+++||++.-
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLT-----SPETLRGAIEDMGFDATL 70 (72)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHHTCEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcC-----CHHHHHHHHHHCCCCcEe
Confidence 4579999999999999999999999999999999999999999987644 368899999999998653
No 14
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.55 E-value=1.5e-14 Score=93.12 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=59.4
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++. . .+.|.++|+++||++..
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~-~------~~~i~~~i~~~Gy~~~~ 68 (73)
T 1mwy_A 4 RYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADND-I------RAQVESALQKAGYSLRD 68 (73)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSC-C------HHHHHHHHHHHTCEEEE
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCC-C------HHHHHHHHHHcCCcccc
Confidence 56799999999999999999999999999999999999999999874 2 47899999999998764
No 15
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.54 E-value=3.2e-14 Score=89.97 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=61.4
Q ss_pred ceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 97 KLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
.-++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ..+.|.++|+++||++..
T Consensus 5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~ 73 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAET-----GTAAIQEKIEKLGYHVVI 73 (76)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTC-----CHHHHHHHHHHHTCEEEC
T ss_pred ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHCCCceec
Confidence 345679999999999999999999999999999999999999999987544 368899999999998754
No 16
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.54 E-value=1.1e-14 Score=95.43 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=56.8
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
+..|+| ||+|.+|+.+|+++|.+++|| +++|++..+.++|+++ . .++.|.++|+++||++.-+
T Consensus 3 ~~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~--~------~~~~i~~~i~~~Gy~~~~~ 65 (68)
T 3iwl_A 3 KHEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE--H------SMDTLLATLKKTGKTVSYL 65 (68)
T ss_dssp EEEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES--S------CHHHHHHHHHTTCSCEEEE
T ss_pred eEEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEec--C------CHHHHHHHHHHcCCceEec
Confidence 457999 999999999999999999999 9999999999999862 2 3689999999999998754
No 17
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=99.54 E-value=1.1e-14 Score=91.83 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=58.4
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ...|.++|+++||++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~------~~~i~~~i~~~Gy~~~ 65 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTS------PDALTAAVAGLGYKAT 65 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSC------HHHHHHHHHTTTSEEE
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCC------HHHHHHHHHHCCCceE
Confidence 48999999999999999999999999999999999999999987643 6899999999999864
No 18
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.53 E-value=1.5e-14 Score=91.93 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=61.0
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~ 172 (183)
+.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ....|.++|+++||++..++
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~~~ 73 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEII-----GPRDIIHTIESLGFEPSLVK 73 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTT-----HHHHHHHHHHHHHCEEEESS
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCCceeec
Confidence 569999999999999999999999999999999999999999987544 35789999999999876543
No 19
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=99.53 E-value=2.8e-14 Score=95.51 Aligned_cols=68 Identities=13% Similarity=0.265 Sum_probs=61.2
Q ss_pred ceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 97 KLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
.-++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ....|.++|+++||++.
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~ 75 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLI-----SVEEMKKQIEAMGFPAF 75 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTC-----CHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCceE
Confidence 346779999999999999999999999999999999999999999987544 36889999999999864
No 20
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.52 E-value=9.8e-15 Score=92.66 Aligned_cols=64 Identities=25% Similarity=0.435 Sum_probs=57.0
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
+.|+|+||+|.+|+.+|+++|.+++||.+++|++..+.++| +... ....|.++|+++||++..+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v--~~~~------~~~~i~~~i~~~Gy~~~~~ 65 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALV--EGTA------DPKALVQAVEEEGYKAEVL 65 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEE--CSCC------CHHHHHHHHHTTTCEEEEC
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEE--CCCC------CHHHHHHHHHHcCCCcEec
Confidence 35899999999999999999999999999999999999999 3333 4689999999999998654
No 21
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.50 E-value=2.3e-14 Score=93.07 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=60.6
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ....|.++|+++||++..
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~ 70 (77)
T 1y3j_A 4 KCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVI-----QPPMIAEFIRELGFGATV 70 (77)
T ss_dssp EEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTS-----CHHHHHHHHHHHTSCEEE
T ss_pred EEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCceEE
Confidence 4579999999999999999999999999999999999999999987544 358899999999998754
No 22
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.49 E-value=3e-14 Score=89.89 Aligned_cols=67 Identities=16% Similarity=0.364 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.+.|.++ ... ....|.++|+++||++..+
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~-----~~~~i~~~i~~~G~~~~~~ 69 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYD-NEV-----TADSIKEIIEDCGFDCEIL 69 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEEC-TTS-----CHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEEC-CCC-----CHHHHHHHHHHCCCceEEc
Confidence 456999999999999999999999999999999999999999998 332 3588999999999987644
No 23
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=99.49 E-value=5.1e-14 Score=96.98 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=61.1
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhc---CceeEeee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGS---GFKLQTLN 172 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~a---GFkVq~l~ 172 (183)
++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ....|.++|+++ ||++..++
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~-----~~~~i~~~i~~~g~Ggy~~~~~~ 75 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSV-----TPESLRKAIEAVSPGLYRVSITS 75 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSC-----CTHHHHHHHHTTSTTTCEEECCC
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCC-----CHHHHHHHHHhccCCCeEEEEeC
Confidence 4579999999999999999999999999999999999999999987544 358899999999 59876443
No 24
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.46 E-value=3.4e-14 Score=87.53 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=55.2
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
+.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.++|.. .. ....|.++|+++||++
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~--~~------~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS--AL------GEEQLRTAIASAGYEV 63 (64)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEEC--SS------CHHHHHHHHHHTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEe--cC------CHHHHHHHHHHcCCCC
Confidence 4699999999999999999999999999999999999999983 22 3588999999999975
No 25
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=99.46 E-value=2e-13 Score=97.95 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=64.3
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
-++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ....|.++|+++||++......|.
T Consensus 8 ~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~-----~~~~i~~~i~~~Gy~~~~~~~~l~ 81 (111)
T 2ofg_X 8 KTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQV-----SEITIQERIAALGYTLAEPKSSVT 81 (111)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTC-----SHHHHHHHHHTTTCCEECCCCCCC
T ss_pred eEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCC-----CHHHHHHHHHHcCCeeeecceeee
Confidence 45679999999999999999999999999999999999999999987544 368899999999999866544443
No 26
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=99.45 E-value=1e-13 Score=89.35 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=60.7
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ....|.++|+++||++...
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~~ 71 (80)
T 1jww_A 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEA-----SVSDLKEAVDKLGYKLKLK 71 (80)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTC-----CHHHHHHHHHHHTSEEEEC
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHcCCeEEec
Confidence 3569999999999999999999999999999999999999999987544 3688999999999987553
No 27
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=99.24 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=61.4
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
-++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|++++... ..+.|.++|+++||++.
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~ 146 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEII-----GPRDIIKIIEEIGFHAS 146 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTS-----CHHHHHHHHHHHTCEEE
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCC-----CHHHHHHHHHhCCCceE
Confidence 35679999999999999999999999999999999999999999998654 46899999999999864
No 28
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=99.45 E-value=5.6e-14 Score=89.65 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=56.5
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
++.|+|+||.|.+|+.+|+++|.++ ||.+++|++..+.+.|.+++. ..|.++|+++||++..+
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~---------~~i~~~i~~~Gy~~~~~ 64 (67)
T 2kyz_A 2 RYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL---------DSVLKKLEEIDYPVESY 64 (67)
T ss_dssp EEEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH---------HHHHHHHHTTTCCCCBC
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH---------HHHHHHHHHcCCceeeE
Confidence 3569999999999999999999999 999999999999999988753 57999999999986543
No 29
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=99.45 E-value=1.9e-13 Score=98.70 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=62.6
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~ 172 (183)
++.|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.+++... ....|.++|+++||++....
T Consensus 75 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~~~ 143 (151)
T 1p6t_A 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEA-----SVSDLKEAVDKLGYKLKLKG 143 (151)
T ss_dssp EEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTC-----CHHHHHHHHHHHTCCEEESC
T ss_pred ccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCC-----CHHHHHHHHHHcCCCeEEcC
Confidence 5679999999999999999999999999999999999999999997654 46899999999999976543
No 30
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.44 E-value=2.9e-13 Score=88.70 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=57.7
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCC-CceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTE-GISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ie-GVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
-++.|+|+ |+|.+|+.+|+++|.+++ ||.+++|++..+.++|.+ .. ....|.++|+++||++..+
T Consensus 5 ~~~~~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~--~~------~~~~i~~~i~~~Gy~~~~~ 70 (73)
T 1cc8_A 5 KHYQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYT--TL------PYDFILEKIKKTGKEVRSG 70 (73)
T ss_dssp EEEEEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEE--SS------CHHHHHHHHHTTSSCEEEE
T ss_pred eEEEEEEe-eECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEE--eC------CHHHHHHHHHHhCCCceee
Confidence 34679999 999999999999999999 999999999999999986 22 3689999999999987643
No 31
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.38 E-value=2.2e-13 Score=94.47 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=56.5
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
++.|+|+||.|.+|+.+|+++|.+++||.+++|++..+.++|.++ . ....|.++|+++||++
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~--~------~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGV--S------DAAHIAEIITAAGYTP 84 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESC--C------CHHHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEec--C------CHHHHHHHHHHcCCCC
Confidence 457999999999999999999999999999999999999999863 2 3689999999999975
No 32
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1.1e-12 Score=89.98 Aligned_cols=67 Identities=13% Similarity=0.257 Sum_probs=60.2
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
++.|+|+||.|.+|+.+|+++|..++||.++.|++..+.+.|.+++... ....|.++|+++||++..
T Consensus 17 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~ 83 (95)
T 2kkh_A 17 KSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLI-----SPFQIAKALNEARLEANV 83 (95)
T ss_dssp EEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHHTCCEEE
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCC-----CHHHHHHHHHHcCCceEE
Confidence 4569999999999999999999999999999999999999999987543 358899999999998653
No 33
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=99.88 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=61.6
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
-++.|+|+||+|.+|+.+|+++|.+++||.+++|+|..+.+.|.+++... ....|.++|+++||++..
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~Gy~~~~ 189 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVI-----SPEELRAAIEDMGFEASV 189 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHHTSCEEE
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCC-----CHHHHHHHHHHcCCceEE
Confidence 45779999999999999999999999999999999999999999987654 468899999999998654
No 34
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.2e-12 Score=90.27 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=62.5
Q ss_pred eeecCCCCceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 89 AVPVSPSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 89 ~~~~~~~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
..|+..-...++.|+|+ |+|.+|+.+|+++|.+++||.+++|++..+.++|.++ . .+..|.++|+++||++
T Consensus 10 ~~~~~~~~~~~~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~--~------~~~~i~~~i~~~Gy~~ 80 (98)
T 2crl_A 10 SDSGNQGTLCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT--L------PSQEVQALLEGTGRQA 80 (98)
T ss_dssp CCCCCCCCCEEEEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEES--S------CHHHHHHHHHTTTSCE
T ss_pred cCchhcccceEEEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEe--C------CHHHHHHHHHHhCCce
Confidence 34444444566779999 9999999999999999999999999999999999872 2 3589999999999987
Q ss_pred Eee
Q 030077 169 QTL 171 (183)
Q Consensus 169 q~l 171 (183)
.-+
T Consensus 81 ~~~ 83 (98)
T 2crl_A 81 VLK 83 (98)
T ss_dssp EEE
T ss_pred EEc
Confidence 543
No 35
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=91.79 Aligned_cols=67 Identities=18% Similarity=0.383 Sum_probs=60.3
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
++.|+|+||.|.+|+.+|+++|++++||.+++|++..+.+.|.+++... ..+.|.++|+++||++..
T Consensus 5 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~~~ 71 (149)
T 2ew9_A 5 KCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVI-----QPLEIAQFIQDLGFEAAV 71 (149)
T ss_dssp EEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHHTCEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCC-----CHHHHHHHHhcCCCceEe
Confidence 4679999999999999999999999999999999999999999987544 357899999999998653
No 36
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=99.24 E-value=6.8e-12 Score=80.41 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=51.5
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
+..|+|+||.|.+|+.+|+++|..++||.+++|++..+.+.|.++. . .++|+++||..
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~--~----------~~~i~~~Gy~~ 61 (71)
T 2aj0_A 4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEA--S----------IQQVEQAGAFE 61 (71)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESC--C----------HHHHHHHHTTT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecC--c----------HHHHHHhCCCc
Confidence 3569999999999999999999999999999999999999998754 1 45889999964
No 37
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=99.18 E-value=1.1e-10 Score=84.13 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
-...|+|+||.|.+|+.+|+++|.+++||.++.|++..+.+.+.+++... ....|.++|+++||++
T Consensus 6 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAET-----GTAAIQEKIEKLGYHV 71 (151)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTS-----CHHHHHHHHHHHTCEE
T ss_pred eEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcC-----CHHHHHHHHHHcCCcc
Confidence 34569999999999999999999999999999999999999999886533 3578999999999965
No 38
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=99.17 E-value=4.4e-11 Score=92.19 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=58.5
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhc---Ccee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGS---GFKL 168 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~a---GFkV 168 (183)
++.|+|+||+|.+|+.+|+++|.+++||.+++|++..+.+.|.+++... ....|.++|+++ ||++
T Consensus 21 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~-----~~~~i~~~i~~~~~gg~~v 88 (202)
T 2rop_A 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCT-----SPVALQRAIEALPPGNFKV 88 (202)
T ss_dssp EEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHTTSSSSCSEE
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC-----CHHHHHHHHHHhccCCeEE
Confidence 4569999999999999999999999999999999999999999987644 368899999998 4776
No 39
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=99.01 E-value=6.8e-10 Score=91.16 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=57.7
Q ss_pred ceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 97 KLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
..++.|+|+ |+|.+|+.+|+++|++++||.+++|++..+.++|+.. . .++.|.++|+++||++.-
T Consensus 5 ~~~~~l~V~-MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~--~------~~~~I~~aI~~~Gy~a~~ 69 (222)
T 1qup_A 5 TYEATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS--V------APSTIINTLRNCGKDAII 69 (222)
T ss_dssp CEEEEEECC-CCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES--S------CHHHHHHHHHHTTCCCEE
T ss_pred ceEEEEEEc-cccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEecc--C------CHHHHHHHHHHcCCcccc
Confidence 356779999 9999999999999999999999999999999999852 2 358999999999998654
No 40
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.00 E-value=3.5e-10 Score=105.16 Aligned_cols=67 Identities=12% Similarity=0.286 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
++.|+|+||+|.+|+.+|+++|.+++||.+++|++..+.+.|++++... ..+.|.++|+++||++..
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~-----~~~~i~~ai~~~Gy~~~~ 69 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRI-----DFETIKRVIEDLGYGVVD 69 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTC-----CHHHHHHHHHHHCCEESS
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcC-----CHHHHHHHHHhcCCcccc
Confidence 4579999999999999999999999999999999999999999988755 479999999999999753
No 41
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.96 E-value=1.3e-09 Score=91.37 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=58.9
Q ss_pred CceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 96 DKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 96 ~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
+..++.|+|+ |+|.+|+.+|+++|.+++||.+++|+|..+.++|+. .. .++.|+++|+++||++.-.
T Consensus 5 ~~~~~~l~V~-MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~--~~------~~~~I~~aIe~~Gy~a~~~ 71 (249)
T 1jk9_B 5 DTYEATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVES--SV------APSTIINTLRNCGKDAIIR 71 (249)
T ss_dssp CCEEEEEECC-CCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEE--SS------CHHHHHHHHHTTTCCCEEE
T ss_pred CceeEEEEEe-eccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEec--CC------CHHHHHHHHHHhCCCcccc
Confidence 4567789999 999999999999999999999999999999999983 22 3589999999999987543
No 42
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=85.45 E-value=1.1 Score=31.87 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=42.3
Q ss_pred EEEecCCCcccHHHHHHhhccC--CCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 102 FQADGAMNETAIPAVTQALQGT--EGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~i--eGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
+.+-|..|..-+-++++||+++ +| ..+ .|..+++.. ...|....+..||++...
T Consensus 4 lD~rGl~CP~Pvl~~kkal~~l~~~G-~~L---------~V~~dd~~a------~~dI~~~~~~~G~~v~~~ 59 (87)
T 3hz7_A 4 IDALGQVCPIPVIRAKKALAELGEAG-GVV---------TVLVDNDIS------RQNLQKMAEGMGYQSEYL 59 (87)
T ss_dssp EECTTCCTTHHHHHHHHHHHTTGGGC-CEE---------EEEESSHHH------HHHHHHHHHHHTCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHhccCCC-CEE---------EEEECCccH------HHHHHHHHHHCCCEEEEE
Confidence 7788999999999999999998 45 333 444455444 389999999999998654
No 43
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=79.82 E-value=2.4 Score=29.32 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=44.0
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~ 172 (183)
..+.+-|..|..-+-++++||++++-=. ...|..+.+.. ...|....+..||++....
T Consensus 11 ~~lD~rGl~CP~Pvl~~kkal~~l~~G~---------~l~V~~dd~~a------~~di~~~~~~~G~~~~~~~ 68 (82)
T 3lvj_C 11 HTLDALGLRCPEPVMMVRKTVRNMQPGE---------TLLIIADDPAT------TRDIPGFCTFMEHELVAKE 68 (82)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHTSCTTC---------EEEEEECCTTH------HHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHhCCCCC---------EEEEEECCccH------HHHHHHHHHHCCCEEEEEE
Confidence 4588999999999999999999984212 23444455444 3789999999999987653
No 44
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=77.70 E-value=3 Score=30.19 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=44.0
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
..+.+-|..|..-+-++++||++++-=. ...|..+.+.. ...|.+..+..||++...
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~Ge---------~L~Vl~dd~~a------~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKPGE---------ILEVWIDYPMS------KERIPETVKKLGHEVLEI 83 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCTTC---------EEEEEESSCTH------HHHHHHHHHHSSCCEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCCCC---------EEEEEECCccH------HHHHHHHHHHCCCEEEEE
Confidence 3589999999999999999999975212 34455555554 388999999999998653
No 45
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=77.04 E-value=2.9 Score=30.40 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=43.4
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
..+.+-|..|..-+-++++||++++-=. ...|..+.+.. ...|....+..||++...
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~~Ge---------~L~Vl~dd~~a------~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLKKGE---------ILEVVSDCPQS------INNIPLDARNHGYTVLDI 84 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCCSSC---------EEEEEEBCSSS------SCHHHHHHHHHTCSEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCCCCC---------EEEEEECCcch------HHHHHHHHHHCCCEEEEE
Confidence 4589999999999999999999985222 34444555444 278899999999998653
No 46
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=76.39 E-value=5.8 Score=28.10 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCCceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 94 PSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 94 ~~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.+.-.-.+.|.|..-+..-..|++.++....|.++++-.. .|.|-|+|.....
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 96 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS 96 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 33443445677888888889999999999988999999765 5789999976554
No 47
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=74.58 E-value=8.3 Score=29.34 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=40.9
Q ss_pred CcccHHHHHHhhccCCCceeeEEEEecc-------EEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 109 NETAIPAVTQALQGTEGISDLKVQVIEG-------IATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 109 Ce~Ci~~VtkALE~ieGVsdVkV~LeeG-------~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
-+.-+.-+.++|.+++||..|.+.+.+= +.++|-+ .. .-+.|+++|++.|=-+..+
T Consensus 17 h~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~-dI------dfd~I~~~IE~~GgvIHSI 79 (100)
T 3bpd_A 17 HEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGN-NL------DYEQIKGVIEDMGGVIHSV 79 (100)
T ss_dssp SCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEE-EE------CHHHHHHHHHTTTCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CC------CHHHHHHHHHHcCCeEEee
Confidence 5667888999999999999999888541 1222221 22 3699999999999766654
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=68.22 E-value=20 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=40.9
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
|+.+.|.|..-+.-...|.+.++....|.++.+-.. .|.|-|++.....
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 55 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 55 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHH
Confidence 356778888888888999999999999999999877 6889999976554
No 49
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=66.99 E-value=4 Score=28.93 Aligned_cols=38 Identities=16% Similarity=0.377 Sum_probs=25.1
Q ss_pred ceEEEEEEecCCCccc---HHHHHHhhccCCCceeeEEEEe
Q 030077 97 KLTMYFQADGAMNETA---IPAVTQALQGTEGISDLKVQVI 134 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~C---i~~VtkALE~ieGVsdVkV~Le 134 (183)
.++..+...-..|... ...|+++|.+++||.+|+|++.
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 3444444434445432 3568999999999999999863
No 50
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=66.19 E-value=4.3 Score=28.82 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.9
Q ss_pred HHHHHHhhccCCCceeeEEEEe
Q 030077 113 IPAVTQALQGTEGISDLKVQVI 134 (183)
Q Consensus 113 i~~VtkALE~ieGVsdVkV~Le 134 (183)
...|+++|.+++||.+|+|++.
T Consensus 61 ~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 61 GEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp HHHHHHHHHTSTTCCEEEEEEC
T ss_pred HHHHHHHHHhCCCceeEEEEEe
Confidence 4578999999999999999863
No 51
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=66.13 E-value=15 Score=24.07 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccccCcc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFDDEE 179 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~d~~ 179 (183)
.+.|-|..-+.--..|++.++.. +|.++++.-..|.|-|++..... +....+.+.+.-|+=..|.+.+...+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~------a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQ------AQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHH------HHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHH------HHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35567777777788999999999 99999998788999999976655 24444444443344445555555444
No 52
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=65.47 E-value=2.4 Score=28.67 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=41.3
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEe
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQT 170 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~ 170 (183)
.+.+-|..|..-+-++++||++++.=. ...|..+.+.. ...|....+..||++..
T Consensus 8 ~lD~rGl~CP~Pvl~~k~al~~l~~G~---------~L~V~~dd~~a------~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 8 VIDARGSYCPGPLMELIKAYKQAKVGE---------VISVYSTDAGT------KKDAPAWIQKSGQELVG 62 (78)
T ss_dssp CCCBSSCSSCTTHHHHHHHHTTSCTTC---------CEECCBSSSCH------HHHHHHHHHHHTEEECC
T ss_pred EEECCCCCCCHHHHHHHHHHHcCCCCC---------EEEEEECCccH------HHHHHHHHHHCCCEEEE
Confidence 367889999999999999999985212 23444444443 37899999999999854
No 53
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=65.08 E-value=9.1 Score=27.73 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=37.0
Q ss_pred ccHHHHHHhhccCCCceeeEE-EEeccEEEEEeccceeeecccchHHHHHHHHhcCc--eeEeeecccc
Q 030077 111 TAIPAVTQALQGTEGISDLKV-QVIEGIATVELKKQTTVQATGVAANLVEIIQGSGF--KLQTLNLSFD 176 (183)
Q Consensus 111 ~Ci~~VtkALE~ieGVsdVkV-~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGF--kVq~l~l~f~ 176 (183)
+-...|.++|.++||| .+-. +-.+|+..|.++.+.. ..|.+.|.+.-= .|-..+|-|.
T Consensus 17 ~~~~~V~~~L~~ipgv-Ei~~~~~~~GkiVV~iEa~~~-------~~l~~~i~~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 17 ERISDISTQLNAFPGC-EVAVSDAPSGQLIVVVEAEDS-------ETLIQTIESVRNVEGVLAVSLVYH 77 (95)
T ss_dssp TSHHHHHHHHTTSTTE-EEEEEETTTTEEEEEEEESSH-------HHHHHHHHHHTTSTTEEEEEESSC
T ss_pred CCHHHHHHHHHCCCCe-EEEEecCCCCCEEEEEEeCCH-------HHHHHHHHHHhcCCCccEEeEEEE
Confidence 3478999999999999 4543 3347888888877666 555555543321 3444455443
No 54
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=64.70 E-value=8.6 Score=31.08 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=40.6
Q ss_pred CceeeEEEEeccEEEEEeccceee---ecccchHHHHHHHHhcCceeEeeeccccCc
Q 030077 125 GISDLKVQVIEGIATVELKKQTTV---QATGVAANLVEIIQGSGFKLQTLNLSFDDE 178 (183)
Q Consensus 125 GVsdVkV~LeeG~AtVe~dkqttv---qatgvas~LvEaIe~aGFkVq~l~l~f~d~ 178 (183)
|==+|+|.+++|.+.+.+.-+... -.-+....|++++.+.|+++..++.+-++.
T Consensus 99 G~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~~~ 155 (169)
T 2rrl_A 99 GQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSESF 155 (169)
T ss_dssp CCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESSCC
T ss_pred CcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecCCc
Confidence 445788999999999988664431 112345688999999999999999987653
No 55
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=63.79 E-value=28 Score=26.20 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=43.8
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEec------c-EEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVIE------G-IATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee------G-~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
+.+-=. -+.-+.-+.++|.+++||..|.+++.+ | +.+++- ... .-+.|+++|++.|=-++.+
T Consensus 11 LDVlKP-h~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG-~~i------d~d~I~~~IE~~Gg~IHSI 79 (97)
T 2raq_A 11 LDILKP-HEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQG-NDL------DFDEITRAIESYGGSIHSV 79 (97)
T ss_dssp EEEECC-SCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEEC-SSC------CHHHHHHHHHHTTCEEEEE
T ss_pred EEecCC-CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEe-cCC------CHHHHHHHHHHcCCeEEee
Confidence 444433 566788899999999999999988853 1 122222 223 3599999999999877655
No 56
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.23 E-value=12 Score=23.90 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=41.5
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
..+.|.|..-+.....|++.++....|.++++.-..|.|-|++.....
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~ 60 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQA 60 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHH
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHH
Confidence 456788998889999999999999889999999888999999976544
No 57
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=63.22 E-value=23 Score=25.59 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=42.4
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeE-EEE-eccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLK-VQV-IEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVk-V~L-eeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
+-++.....|-+.++.++|.+ .||.=.. +.. +++.+.+-+... ..+..++++.++||++.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~-~~InI~~~~~~~~~~~~~~~i~~~-------d~~~A~~~L~~~g~~v~ 136 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSA-EGVFIEYMYSFANNNVANVVIRPS-------NMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHH-TTCCEEEEEEEEETTEEEEEEEES-------CHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHH-CCCCEEEEEEEccCCcEEEEEEeC-------CHHHHHHHHHHcCCEEe
Confidence 444555778999999999987 4654423 223 567777666443 35889999999999984
No 58
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=57.60 E-value=9 Score=32.52 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=35.3
Q ss_pred HHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccc
Q 030077 116 VTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 116 VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f 175 (183)
..-|||+ |+.||..+ ++|...|-.++.-- ..++++++++||++..-.+.|
T Consensus 155 ~e~aiea--GAeDv~~~-edg~~~v~t~p~~~-------~~V~~aL~~~g~~~~~aei~~ 204 (247)
T 4f3q_A 155 MEIALEV--GAEDVTTN-DDGSIDVTTLPEDF-------EKIRNAMKAADLNPSHAEVTV 204 (247)
T ss_dssp HHHHHHH--TCSEEEEC-TTSCEEEEECGGGH-------HHHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHHhC--CCceeeec-CCceEEEEECHHHH-------HHHHHHHHHcCCCeeEEEEEE
Confidence 4456776 99998853 56666665544443 899999999999877665554
No 59
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=57.47 E-value=6.3 Score=28.40 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=25.9
Q ss_pred ceEEEEEEecCCCccc---HHHHHHhh-ccCCCceeeEEEEe
Q 030077 97 KLTMYFQADGAMNETA---IPAVTQAL-QGTEGISDLKVQVI 134 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~C---i~~VtkAL-E~ieGVsdVkV~Le 134 (183)
.+.+.+..--..|... ...|+++| .+++||.+|+|.+.
T Consensus 45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 3444444444445432 45788999 99999999999873
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=56.99 E-value=34 Score=22.48 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=48.3
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccc
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f 175 (183)
+.|-|...+..-..|++.++....|.++++-.. .|.|-|+|..... +....+.+.+.-|+=..|.+.|
T Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~------A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 5 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLES------SASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHH------HHHHHHHHTTCEETTEECEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHH------HHHHHHHhCCCeECCeEEEEEE
Confidence 556788888888999999999998999988665 5889999976655 2444444444333334455554
Q ss_pred cC
Q 030077 176 DD 177 (183)
Q Consensus 176 ~d 177 (183)
..
T Consensus 79 a~ 80 (96)
T 2x1f_A 79 SS 80 (96)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 61
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=56.75 E-value=60 Score=24.38 Aligned_cols=63 Identities=10% Similarity=0.278 Sum_probs=44.0
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEecc-------EEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVIEG-------IATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG-------~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
+.+-=..-+.-+.-+.++|.+++||..|.+++.+= +.++|-+ .. .-+.|+++|++.|=-++.+
T Consensus 9 LDVlKP~h~P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~-~i------dfd~I~~~IE~~Gg~IHSI 78 (96)
T 2x3d_A 9 LDVLKPIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGT-SL------NFDDIRKMLEEEGCAIHSI 78 (96)
T ss_dssp EEEEEESSSSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEES-SC------CHHHHHHHHHHTTCEEEEE
T ss_pred EEcccCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CC------CHHHHHHHHHHcCCeEEee
Confidence 33333345667888999999999999999888541 2222222 22 3589999999999877655
No 62
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.38 E-value=36 Score=21.70 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=54.3
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLS 174 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~ 174 (183)
.+.|.|...+.....|++.++....|.++++-.. .|.|-|++..... +....+.+.+.-++...|..+
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~------a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 7 GLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA------AQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHH------HHHHHHHHHHHTCCEESCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHH------HHHHHHHhcCCeEeeEEEeec
Confidence 4567788888889999999999999999998776 5789999988776 466667777777776666554
Q ss_pred c
Q 030077 175 F 175 (183)
Q Consensus 175 f 175 (183)
+
T Consensus 81 ~ 81 (85)
T 1x4e_A 81 G 81 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.25 E-value=41 Score=22.25 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=50.6
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
.+.|-+..-+.--..|++.++....|.++.+.-..|.|-|+|..... +....+.+.+.=|.=..|.+.|.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~------a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTL------AEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHH------HHHHHHHHTTCCBTTBCCEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHH------HHHHHHHhCCCEeCCceEEEEEc
Confidence 35677888788888999999999999999998888999999977665 34444444444343344444443
No 64
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.99 E-value=11 Score=28.50 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=48.6
Q ss_pred EEEEecCCCc-ccHHHHHHhhccCCCceeeEEEEeccEEEEEeccc-eeeecccchHHHHHHHHhcCceeE
Q 030077 101 YFQADGAMNE-TAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQ-TTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 101 ~FKaEGM~Ce-~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkq-ttvqatgvas~LvEaIe~aGFkVq 169 (183)
.++|.|-.-+ .+...|+.++.....|..|++......+.|++..+ -. |...++++.+-|..+.
T Consensus 20 il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~------A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKE------ALGKAKDANNGNLQLR 84 (121)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHH------HHHHHHHTTTSCBCTT
T ss_pred EEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHH------HHHHHHHhhcCCcEEe
Confidence 4788888888 88999999999999999999999999999999873 33 3444444444454443
No 65
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=55.75 E-value=19 Score=30.37 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccc
Q 030077 116 VTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 116 VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f 175 (183)
+.-|||+ |+.||. -++|...|-.++.-- ..++++++++||++..-.+.|
T Consensus 155 le~alea--GAeDv~--~e~~~~~v~t~p~~~-------~~V~~aL~~~g~~~~~aei~~ 203 (240)
T 1mw7_A 155 EFALIDY--GLEELE--EVEDKIIIRGDYNSF-------KLLNEGFESLKLPILKASLQR 203 (240)
T ss_dssp HHHHGGG--TEEEEE--EETTEEEEEEEGGGH-------HHHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHHHC--CCceee--cCCceEEEEECHHHH-------HHHHHHHHHcCCCeeeeeeEe
Confidence 3446664 899886 356776665555444 899999999999887666655
No 66
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=55.45 E-value=25 Score=23.68 Aligned_cols=45 Identities=2% Similarity=0.038 Sum_probs=37.6
Q ss_pred EEEEecCCC-cccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 101 YFQADGAMN-ETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~C-e~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
.+.|.|... +.--..|++.++....|.++.+ ..|.|-|+|.....
T Consensus 24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~ 69 (97)
T 2xnq_A 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQS 69 (97)
T ss_dssp EEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHH
Confidence 456778886 8888999999999988988877 58999999977555
No 67
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=55.35 E-value=4.9 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=45.1
Q ss_pred HHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHh-cCceeEeeecccc
Q 030077 113 IPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQG-SGFKLQTLNLSFD 176 (183)
Q Consensus 113 i~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~-aGFkVq~l~l~f~ 176 (183)
-.-++++|+++ |-++|+=.+..|-+.|+-+.+.. ..+..|.++|++ .||++.-+-++-+
T Consensus 24 MadLr~~l~~l-Gf~~V~TyI~SGNvvF~s~~~~~----~l~~~ie~~l~~~fg~~v~v~vrs~~ 83 (183)
T 2hiy_A 24 MAELRQELTNL-GLEKVESYINSGNIFFTSIDSKA----QLVEKLETFFAVHYPFIQSFSLLSLE 83 (183)
T ss_dssp HHHHHHHHHHH-TCEEEEEETTTTEEEEEECSCHH----HHHHHHHHHHHHHCTTCCCCEEEEHH
T ss_pred HHHHHHHHHHc-CCccceEEEecCCEEEecCCCHH----HHHHHHHHHHHHhcCCCCCEEEecHH
Confidence 35688999998 99999999999999998765211 146777788855 8998776655543
No 68
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=53.00 E-value=38 Score=22.37 Aligned_cols=49 Identities=10% Similarity=-0.017 Sum_probs=42.3
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
...+.|-|..-+.-...|++.++....|.++++.-..|.|-|+|.....
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQ 75 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHH
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHH
Confidence 3567788988888899999999999889999998888999999976655
No 69
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.27 E-value=37 Score=22.95 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=51.3
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
..+.|-|..-+.-...|++.++....|.++++....|.|-|+|..... +....+.+.+.-|.=..|.+.|.
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~------a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHES------AAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHH------HHHHHHHHTTCEETTEECEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHH------HHHHHHHcCCCEECCcEEEEEec
Confidence 356778888888899999999999999999998889999999987665 24444444443333344444443
No 70
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=52.20 E-value=40 Score=22.29 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=50.5
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-ccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
.+.|-|..-+.....|.+.++....|.++++-.. .|.|-|++..... +....+.+.+.-|.=..|...+.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~------a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD------AEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHH------HHHHHHHHHHSCSSSCCCEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHH------HHHHHHHHCCCeECCcEEEEEEc
Confidence 3556777777888899999999989999988775 8999999987666 35555555555554444444443
No 71
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=52.17 E-value=55 Score=22.54 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=48.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
..+.|-|..-+.-...|++.++....|.++++. .|.|-|+|..... +....+.+.+.-|.=..|...|.
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~------A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAES------AAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHH------HHHHHHHHTTCEETTEECEEESC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHH------HHHHHHHcCCCEECCeEEEEEEe
Confidence 456688888888889999999999999988887 8999999977655 24444444443343344444443
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=51.20 E-value=32 Score=23.71 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=40.8
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
-.+.|-|...+.-...|++.++....|.++.+-.. .|.|-|+|.....
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 76 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 76 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH
Confidence 45778899888889999999999999998888766 7899999976655
No 73
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=50.13 E-value=14 Score=31.46 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccc
Q 030077 117 TQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 117 tkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f 175 (183)
.-|||+ |+.||..+ ++|...|-.++.-- ..++++++++||++..-.+.|
T Consensus 155 e~alea--GAeDv~~~-e~~~~~v~t~p~~~-------~~V~~aL~~~g~~~~~aei~~ 203 (249)
T 1kon_A 155 EAALEA--GAEDVVTY-DDGAIDVYTAWEEM-------GKVRDALEAAGLKADSAEVSM 203 (249)
T ss_dssp HHHHHH--TCSEEEEC-TTSCEEEEEEGGGH-------HHHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHhC--CCceeeec-CCceEEEEECHHHH-------HHHHHHHHHcCCCeeeeeeEE
Confidence 446664 88877542 46666665544443 899999999999877666554
No 74
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=48.16 E-value=66 Score=22.32 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=45.6
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEec------cEEEEEeccceeeecccchHHHHHHHHhcCc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIE------GIATVELKKQTTVQATGVAANLVEIIQGSGF 166 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee------G~AtVe~dkqttvqatgvas~LvEaIe~aGF 166 (183)
.+.|.|..-+.-...|.+.++....|.++.+-... |.|-|++..... |....+.+.+.-|
T Consensus 91 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~------A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE------AQEAISALNNVIP 156 (168)
T ss_dssp EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH------HHHHHHHHTTCCC
T ss_pred CEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH------HHHHHHHhcCCEe
Confidence 46778888888899999999999999999998765 789999977555 3444444544433
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=47.62 E-value=58 Score=21.53 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=40.4
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-----ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
..+.|-|..-+.--..|.+.++....|.++.+-.. .|.|-|+|.....
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 68 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTE 68 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHH
Confidence 34667888888888999999999988999999876 6899999977655
No 76
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=46.83 E-value=21 Score=30.35 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccc
Q 030077 116 VTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 116 VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f 175 (183)
+.-|||+ |+.||. -++|...|-.++.-- ..++++++++||++..-.+.|
T Consensus 153 le~alea--GAeDv~--~e~~~~~v~t~p~~~-------~~V~~aL~~~g~~~~~aei~~ 201 (249)
T 1lfp_A 153 LEKAIEV--GAEDVQ--PGEEVHIIYTVPEEL-------YEVKENLEKLGVPIEKAQITW 201 (249)
T ss_dssp HHHHHHH--TCSEEE--CCSSEEEEEECGGGH-------HHHHHHHHTTTCCCSEEEEEE
T ss_pred HHHHHhc--CCceee--cCCceEEEEECHHHH-------HHHHHHHHHcCCCeeeeeeEE
Confidence 3446664 888776 346666665544433 899999999999887666554
No 77
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.97 E-value=58 Score=21.06 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=39.4
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
...+.|-+...+.--..|++.++....|.++++. .|.|-|+|.....
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~ 54 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTA 54 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHH
Confidence 3456778998888999999999999888887776 8999999976555
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.88 E-value=60 Score=22.16 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=41.9
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe----ccEEEEEecccee
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI----EGIATVELKKQTT 147 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le----eG~AtVe~dkqtt 147 (183)
-.-.+.|.|..-+.-...|++.++....|.++++-.. .|.|-|+|.....
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~ 81 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 81 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHH
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHH
Confidence 3445778899999999999999999999999988766 6899999977655
No 79
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=45.33 E-value=44 Score=24.99 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.5
Q ss_pred ceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 97 KLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
.-.+.|-+..-..+.+...+.+..++++ . .|.+.++.|.|...-.--..-.|+++.+-+++.+.|..+.-.
T Consensus 59 ~~~isf~V~~~d~~~a~~~L~~~~~~~~-~---~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 59 RQQMAFTVKKDFAQEALEALEPVLAEIG-G---EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHC-C---EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred ceEEEEEEehHHHHHHHHHHHHHHHHhC-C---cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 3567788877555556666666555564 3 677788999988877554455699999999999999887544
No 80
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=45.02 E-value=1.3e+02 Score=24.62 Aligned_cols=75 Identities=8% Similarity=0.052 Sum_probs=45.9
Q ss_pred CCceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe--ccEEEEEeccceeeecccchHHHHHHHHhcCceeEeee
Q 030077 95 SDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI--EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 95 ~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le--eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~ 172 (183)
.+...|+|.++|. +..+..|++.|.++..|-.|..--. +..+.=|+ --.-+.+++....|.+.++-..-++++.+
T Consensus 68 ~gisRitIvV~g~--e~~ieqL~kQL~KLidVikV~dl~~~~~~~v~REl-~LiKV~~~~~r~ei~~i~~~fra~ivDv~ 144 (193)
T 2fgc_A 68 PGLSRLVIMVKGD--DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREM-ALIKVRFDEDKQEIFQLVEIFRGKIIDVS 144 (193)
T ss_dssp TTEEEEEEEEEEC--TTHHHHHHHHHTTSTTEEEEEECCSSGGGEEEEEE-EEEEEECSSCHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEEEEECC--HHHHHHHHHHhcCcCceEEEEEecCCCCccceeEE-EEEEEeCCcCHHHHHHHHHHcCCEEEEEc
Confidence 3457888999987 8999999999999988876664322 12221111 11112333335666666666666666554
No 81
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=44.91 E-value=31 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=33.7
Q ss_pred CCCCceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe
Q 030077 93 SPSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI 134 (183)
Q Consensus 93 ~~~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le 134 (183)
+---+|.+.+-++. =++-...++.++++++||+.++|.-.
T Consensus 46 fGlk~L~i~~vveD--~~~~td~lee~i~~~e~Vqsvdv~~~ 85 (89)
T 1gh8_A 46 FGLVALNVMVVVGD--AEGGTEAAEESLSGIEGVSNIEVTDV 85 (89)
T ss_dssp SSCEEEEEEEEESS--SCGGGGHHHHHHTTSCSSEEEEEEEE
T ss_pred cceeeEEEEEEEEc--CCcChHHHHHHHhccCCccEEEEEEE
Confidence 66778889999977 35778999999999999999998643
No 82
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=44.38 E-value=61 Score=20.82 Aligned_cols=70 Identities=7% Similarity=0.143 Sum_probs=48.9
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEE----eccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQV----IEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~L----eeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
.+.|.|..-+.....|++.++....|.++++.. ..|.|-|+|..... +....+.+.+.-|+=..|.+.+.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~------a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEV------AERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHH------HHHHHHHHTTCCBTTBCCCCEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHH------HHHHHHHhCCCEECCcEEEEEEc
Confidence 466788888888999999999998899999886 35789999976555 24444444444444344444443
No 83
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=44.06 E-value=72 Score=21.57 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=39.4
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEec------cEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIE------GIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee------G~AtVe~dkqtt 147 (183)
.+.|.+..-+..-..|++.++....|.++++-... |.|-|+|.....
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 79 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 79 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHH
Confidence 46678888888899999999999999999998765 689999976555
No 84
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=43.83 E-value=49 Score=23.00 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=39.6
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEec-----cEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIE-----GIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee-----G~AtVe~dkqtt 147 (183)
.+.|-|..-+.....|.+.++....|.++.+-... |.|-|+|.....
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~ 60 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHH
Confidence 45577888888899999999999999999988865 899999976554
No 85
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=43.71 E-value=10 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=16.0
Q ss_pred cCCCcccHHHHHHhhccC
Q 030077 106 GAMNETAIPAVTQALQGT 123 (183)
Q Consensus 106 GM~Ce~Ci~~VtkALE~i 123 (183)
||.|..|.+.|++.|++.
T Consensus 35 Gt~CG~C~~~i~~il~~~ 52 (73)
T 4e6k_G 35 GTQCGKCASLAKQVVRET 52 (73)
T ss_dssp TSSSCTTHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 788999999999999864
No 86
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.19 E-value=76 Score=21.44 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=51.2
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHh-cCceeE-------e
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQG-SGFKLQ-------T 170 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~-aGFkVq-------~ 170 (183)
...+.|-+..-+.....|++.++....|.+++|-.. |.|-|+|..... ..+||+. -|+.+. .
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~---------a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKED---------MTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHH---------HHHHHHHSSSEEEECTTSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHH---------HHHHHHHHCcCCccCCcCcceE
Confidence 345678888888889999999999988999988766 999999976544 5666664 466553 4
Q ss_pred eeccccC
Q 030077 171 LNLSFDD 177 (183)
Q Consensus 171 l~l~f~d 177 (183)
|.+.+..
T Consensus 85 i~V~~a~ 91 (108)
T 1x4c_A 85 IRVKVDG 91 (108)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 5555543
No 87
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=41.99 E-value=61 Score=23.68 Aligned_cols=60 Identities=8% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHhhccCCCceeeEEEEecc--EEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccccCc
Q 030077 114 PAVTQALQGTEGISDLKVQVIEG--IATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFDDE 178 (183)
Q Consensus 114 ~~VtkALE~ieGVsdVkV~LeeG--~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~d~ 178 (183)
..+..+|.++|||+=-.++++.+ +..+++...-- ..-+.+++.+.+ ||.|+-=+++=+++
T Consensus 15 ~~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF----~~~E~lr~~l~~-gf~Ve~Gs~~~~~d 76 (95)
T 2w7v_A 15 AALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDF----QPFEQARVKLAE-KFNVEQGQLNRSDN 76 (95)
T ss_dssp GGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSS----HHHHHHHHHHHT-TEEEEECCCEEC-C
T ss_pred HHHHHHhccCCCceEEEEeecCCCCeEEEEEecCCH----HHHHHHHHHhhc-CcEEehhhhccCCC
Confidence 35677888999999888888666 44444333221 135789999976 99999877765544
No 88
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=41.70 E-value=35 Score=24.89 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=32.5
Q ss_pred CCCCceEEEEEEecCCCcc-cHHHHHHhhccCCCceeeEEEE
Q 030077 93 SPSDKLTMYFQADGAMNET-AIPAVTQALQGTEGISDLKVQV 133 (183)
Q Consensus 93 ~~~~~ltM~FKaEGM~Ce~-Ci~~VtkALE~ieGVsdVkV~L 133 (183)
+---.|.+.+-++. =++ -...++.++++++||+.++|.-
T Consensus 48 fGlk~L~i~~vveD--~~~~~tD~lee~i~~~e~VqSvdV~~ 87 (91)
T 2yy3_A 48 FGLVALKFYVLGRD--EEGYSFDEVAEKFEEVENVESAEVET 87 (91)
T ss_dssp TSCEEEEEEEEECS--STTCCHHHHHHHHHHSTTEEEEEEEE
T ss_pred cceeeEEEEEEEEC--CCccccHHHHHHHhcCCCceEEEEEE
Confidence 66678888888887 235 6899999999999999999864
No 89
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.12 E-value=75 Score=20.96 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=40.4
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe----ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI----EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le----eG~AtVe~dkqtt 147 (183)
-.+.|-|...+.--..|++.++....|.++++... .|.|-|+|.....
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 67 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHH
Confidence 45667888888889999999999999999988776 6799999976555
No 90
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=40.58 E-value=17 Score=31.10 Aligned_cols=43 Identities=21% Similarity=0.093 Sum_probs=38.1
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEe
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVEL 142 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~ 142 (183)
+++.++|..|.+-+.+|++++..+.-=..++|.+..|.+-+-.
T Consensus 322 ~~~~~~g~~~~~p~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~ 364 (373)
T 1okg_A 322 MTLKVDGAPCERPDAEVQSAATHLHAGEAATVYFKSGRVVTIE 364 (373)
T ss_dssp CCEEETTEEESSCCHHHHHHHTTCBTTCEEEEEETTSCEEEEE
T ss_pred eeeeccCcccCCcHHHHHHHHHhcCCCCcEEEEEccCcEEEEE
Confidence 6799999999999999999999998889999999998765433
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.40 E-value=70 Score=20.96 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=39.9
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
.+.|.+..-+.-...|++.++....|.++++.-..|.|-|+|.....
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~ 65 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDA 65 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHH
Confidence 45677888888889999999999999999888778899999977655
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=40.31 E-value=77 Score=20.83 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=40.1
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCcee--------eEEEEe------ccEEEEEecccee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISD--------LKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsd--------VkV~Le------eG~AtVe~dkqtt 147 (183)
...+.|-|..-+.-...|++.++....|.+ +++-.. .|.|-|+|.....
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~ 75 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 75 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHH
Confidence 345678898888899999999999988998 888765 4789999976555
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.64 E-value=84 Score=21.05 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=39.6
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-----ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
.+.|.+..-+.....|++.++...-|.++++-.. .|.|-|+|.....
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~ 68 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIE 68 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHH
Confidence 4667888888889999999999988999998875 6789999976555
No 94
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.63 E-value=80 Score=20.83 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=48.2
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe----ccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeeccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI----EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le----eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f 175 (183)
.+.|-|..-+.....|.+.++....|.++++... .|.|-|+|..... +....+.+.+.=|.=..|.+.|
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~------A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE------ATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHH------HHHHHHHHTTCBSSSSBCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHH------HHHHHHHhCCCEeCCcEEEEEE
Confidence 3567788888889999999999998999998854 7889999976555 2444444444333333444444
No 95
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=39.52 E-value=85 Score=21.10 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=48.0
Q ss_pred EEEEecCCCc-ccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecccc
Q 030077 101 YFQADGAMNE-TAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 101 ~FKaEGM~Ce-~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
.+.|-+..-+ .--..|++.++....|.++.+ ..|.|-|+|..... +....+.+.+.=|.=..|.+.+.
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~------A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERH------ARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHH------HHHHHHHHTTCEETTEECCEEES
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHH------HHHHHHHcCCCEECCeEEEEEEC
Confidence 5668888887 788999999999998999888 78999999977666 24444444443333344444443
No 96
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=39.50 E-value=4.1 Score=39.05 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=30.3
Q ss_pred EEEEEEecCCCcccHH-HHHHhhccCCCceeeEEEE
Q 030077 99 TMYFQADGAMNETAIP-AVTQALQGTEGISDLKVQV 133 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~-~VtkALE~ieGVsdVkV~L 133 (183)
.+.|.++||.|++|.. +|..||.+. ||..+.++.
T Consensus 22 ~~~~~~dG~~~~~~~g~tv~~aL~~~-Gv~~~~~s~ 56 (965)
T 2gag_A 22 ALSLTVDGAKLSAFRGDTVASALLAN-GVRRAGNSL 56 (965)
T ss_dssp EEEEEETTEEEEEEETCBHHHHHHHT-TCCBCSCCT
T ss_pred eEEEEECCEEEEecCCCHHHHHHHHc-CCeEeecCC
Confidence 5679999999999999 999999998 998877763
No 97
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=39.21 E-value=1e+02 Score=22.00 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=49.2
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeecc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNLS 174 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l~ 174 (183)
.+.|.|..-+.-...|.+.++....|.++.+... .|.|-|+|..... +....+.+.+.-|.=..|.+.
T Consensus 116 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~------a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 116 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV------TDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH------HHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH------HHHHHHHcCCCEECCEEEEEE
Confidence 3557788878888999999999999999999877 5789999987666 344444444433333344444
Q ss_pred cc
Q 030077 175 FD 176 (183)
Q Consensus 175 f~ 176 (183)
|.
T Consensus 190 ~a 191 (198)
T 2yh0_A 190 RA 191 (198)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 98
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=39.05 E-value=87 Score=21.08 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=39.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
..+.|-|...+.....|++.++....|.++++-.. .|.|-|+|.....
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 69 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 69 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 34667788888899999999999999999999876 4789999976554
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=38.96 E-value=1e+02 Score=22.43 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=40.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
-.+.|.|...+..-..|.+.++....|.+|.+... .|.|-|+|.....
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 126 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 126 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHH
Confidence 34678899999999999999999999999999876 5899999976554
No 100
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=36.75 E-value=83 Score=25.21 Aligned_cols=45 Identities=9% Similarity=0.168 Sum_probs=35.2
Q ss_pred ccHHHHHHhhccCCCceeeEEEEecc---------------EEEEEeccceeeecccchHHHHHH
Q 030077 111 TAIPAVTQALQGTEGISDLKVQVIEG---------------IATVELKKQTTVQATGVAANLVEI 160 (183)
Q Consensus 111 ~Ci~~VtkALE~ieGVsdVkV~LeeG---------------~AtVe~dkqttvqatgvas~LvEa 160 (183)
||-=-++..++.++||.++.|=...| .+.|.+|+..+ +-+.|.+.
T Consensus 10 GCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~i-----sy~~LL~~ 69 (168)
T 4gwb_A 10 GCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERI-----SYRRILEL 69 (168)
T ss_dssp SCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTC-----CHHHHHHH
T ss_pred cCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCC-----CHHHHHHH
Confidence 45555677889999999999999988 67888988877 45666554
No 101
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=36.70 E-value=91 Score=20.62 Aligned_cols=48 Identities=8% Similarity=0.033 Sum_probs=39.7
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-----ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
-.+.|.+..-+..-..|++.++...-|.++++-.. .|.|-|+|.....
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 82 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 82 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHH
Confidence 45677888888889999999999988998888865 7889999975544
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.50 E-value=89 Score=20.47 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=39.3
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
.+.|.|..-+..-..|++.++....|.++++-.. .|.|-|+|.....
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 62 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHH
Confidence 3667788888888999999999999999999876 5889999976555
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.17 E-value=1.1e+02 Score=21.19 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=50.2
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeE--eeeccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ--TLNLSF 175 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq--~l~l~f 175 (183)
.+.|-+...+.--..|++..+.-..|.++.+--..|.|-|++..... |....+.+..-|+.+. .|.+.|
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~------A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEA------AITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHH------HHHHHHHHHHSCCEETTEECEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHH------HHHHHHHhccCCceECCcEEEEEE
Confidence 45667888888888999999999999999887778999999987666 3444444444565443 444444
No 104
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.12 E-value=1.1e+02 Score=21.22 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcC--ceeEeeecccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSG--FKLQTLNLSFD 176 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aG--FkVq~l~l~f~ 176 (183)
.+.|-+...+.--..|++..+.-..|.+|.+.-..|.|-|++..... |....+.+.+.+ ++=..|.+.|-
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~------A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDS------AKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHH------HHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHH------HHHHHHHhccCCceECCEEEEEEEc
Confidence 45677888888889999999999999999887778999999987666 345555555555 32234444443
No 105
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=34.95 E-value=91 Score=20.08 Aligned_cols=47 Identities=4% Similarity=-0.021 Sum_probs=39.4
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-----ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
.+.|-|..-+.-...|++.++....|.++++-.. .|.|-|+|.....
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 69 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence 4567788888888999999999999999988775 5789999977655
No 106
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=34.80 E-value=59 Score=23.61 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCCCceEEEEEEecCCCcccHHHHHHhhccCCC-ceeeEEE
Q 030077 93 SPSDKLTMYFQADGAMNETAIPAVTQALQGTEG-ISDLKVQ 132 (183)
Q Consensus 93 ~~~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieG-VsdVkV~ 132 (183)
+---+|.+.+-++. =.+-...+..++++++| |+.++|-
T Consensus 48 fGikkL~i~~vveD--d~v~tD~lee~i~~~ed~VqSvdI~ 86 (91)
T 1b64_A 48 YGIKKLQIQCVVED--DKVGTDMLEEQITAFEDYVQSMDVA 86 (91)
T ss_dssp SSCEEEEEEEEECT--TSSCHHHHHHHHTTCTTTEEEEEES
T ss_pred eeEEEEEEEEEEEC--CccChHHHHHHHHhccCceeEEEEE
Confidence 66778899999987 35789999999999999 9999874
No 107
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.73 E-value=80 Score=22.73 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=39.4
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
.+.|-+..-+.--..|++..+.-..|.+|.|--..|.|-|+++....
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~ 64 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEA 64 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHH
Confidence 45566777777778899999999999999998888999999977555
No 108
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=34.60 E-value=87 Score=19.75 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=39.7
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
..+.|.|..-+.....|++.++....|.++++-.. .|.|-|++.....
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 60 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 60 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHH
Confidence 34667888888889999999999999999999775 4789999966544
No 109
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=34.37 E-value=59 Score=23.79 Aligned_cols=40 Identities=10% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCCCceEEEEEEecCCCcccHHHHHHhhccCCC-ceeeEEEEe
Q 030077 93 SPSDKLTMYFQADGAMNETAIPAVTQALQGTEG-ISDLKVQVI 134 (183)
Q Consensus 93 ~~~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieG-VsdVkV~Le 134 (183)
+---.|.+.+-++. =.+-...+..++++++| |+.++|--.
T Consensus 51 fGlkkL~i~~vveD--d~~~tD~lee~i~~~ed~VqSvdI~~~ 91 (94)
T 1f60_B 51 FGIKKLQINCVVED--DKVSLDDLQQSIEEDEDHVQSTDIAAM 91 (94)
T ss_dssp TTEEEEEEEEEEET--TTCCHHHHHHHHHTCTTTEEEEEEEEE
T ss_pred eeeEEEEEEEEEEC--CccChHHHHHHHHhccCceeEEEEEEE
Confidence 56678888888987 35788999999999999 999998643
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.33 E-value=64 Score=21.08 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=38.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCce-eeEEEEec------cEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGIS-DLKVQVIE------GIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVs-dVkV~Lee------G~AtVe~dkqtt 147 (183)
..+.|-|..-+.-...|++.++....|. ++++-... |.|-|++.....
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~ 64 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLAT 64 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHH
Confidence 3467788888888899999999998898 99987664 789999976544
No 111
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=33.90 E-value=1e+02 Score=20.78 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=46.8
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEeccceeeecccchHHHHHHHHh-cCceeE
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTTVQATGVAANLVEIIQG-SGFKLQ 169 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqttvqatgvas~LvEaIe~-aGFkVq 169 (183)
...+.|.|..-+..-..|++.++....|.++++-.. .|.|-|+|..... ..++|+. -|+.+.
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~---------A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDS---------AQVAIKAMNGFQVG 108 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHH---------HHHHHHHCCCCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHH---------HHHHHHHcCCCEEC
Confidence 345778899888899999999999988999988655 5789999976554 4556654 355543
No 112
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=32.81 E-value=1.2e+02 Score=20.78 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=39.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
..+.|.|..-+.-...|.+.++....|.++.+-.. .|.|-|++.....
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred ceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 45777888888888999999999999999999766 5689999976555
No 113
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=32.56 E-value=86 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHhhccCCCceeeEEEEe
Q 030077 114 PAVTQALQGTEGISDLKVQVI 134 (183)
Q Consensus 114 ~~VtkALE~ieGVsdVkV~Le 134 (183)
.-+.+.|+.++||.+++|.|.
T Consensus 93 gELartI~~i~~V~~ARVhl~ 113 (171)
T 1yj7_A 93 QDIERLLSKIPGVIDCSVSLN 113 (171)
T ss_dssp HHHHHHHTTSTTEEEEEEEEE
T ss_pred HHHHHHHHcCCCeeEEEEEEE
Confidence 347788899999999999985
No 114
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=32.27 E-value=1.1e+02 Score=20.18 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=39.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
-.+.|-|..-+.-...|.+.++....|.++.+-.. .|.|-|+|.....
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 77 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 77 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHH
Confidence 34667898888889999999999999999998765 5789999976555
No 115
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.17 E-value=1.1e+02 Score=20.07 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=38.1
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEec-----cEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVIE-----GIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee-----G~AtVe~dkqtt 147 (183)
+.|-|..-+.-...|++.++....|.++.+-... |.|-|+|.....
T Consensus 20 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 70 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQ 70 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHH
Confidence 5677888888888999999999889999987754 889999976555
No 116
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=32.01 E-value=39 Score=32.56 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=43.9
Q ss_pred eEEEEEEecCC--Ccc------cHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhc
Q 030077 98 LTMYFQADGAM--NET------AIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGS 164 (183)
Q Consensus 98 ltM~FKaEGM~--Ce~------Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~a 164 (183)
-.|.+.+.|-. =+. ....|++.|+.+|||.+|+++=.+.+..|++|++.-.+.-=+.+.|.++|+.+
T Consensus 136 ~~~~~~l~g~~~~~~~~~L~~~a~~~i~~~L~~i~gv~~v~~~g~~~~i~i~id~~kl~~~Gls~~~v~~~l~~~ 210 (1052)
T 2v50_A 136 FLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTPGDVSSAIQAQ 210 (1052)
T ss_dssp EEEEEEEEESSTTSCHHHHHHHHHHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHTTTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHhc
Confidence 35667777653 221 34679999999999999998743455667777753211111457788888765
No 117
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=31.83 E-value=96 Score=19.44 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
.+.|.|..-+.--..|++.++....|.++.+-.. .|.|-|++.....
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 61 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 61 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHH
Confidence 3567788888888999999999998999888553 6789999976555
No 118
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=31.77 E-value=1e+02 Score=21.49 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHhhccC------------CCceeeEEEEeccEEEEEeccceeeecccc----hHHHHHHHHh-cCceeEeeecccc
Q 030077 114 PAVTQALQGT------------EGISDLKVQVIEGIATVELKKQTTVQATGV----AANLVEIIQG-SGFKLQTLNLSFD 176 (183)
Q Consensus 114 ~~VtkALE~i------------eGVsdVkV~LeeG~AtVe~dkqttvqatgv----as~LvEaIe~-aGFkVq~l~l~f~ 176 (183)
..|.++|..+ .-|.+|+| ++|.+.|.+.-... +..- ...+++++.. .|.+-+.+++.++
T Consensus 9 ~~V~~aL~~V~DPel~~~iv~lG~V~~v~v--~~~~V~v~l~lt~~--~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~~ 84 (103)
T 3cq1_A 9 AQAWALLEAVYDPELGLDVVNLGLIYDLVV--EPPRAYVRMTLTTP--GCPLHDSLGEAVRQALSRLPGVEEVEVEVTFE 84 (103)
T ss_dssp HHHHHHHTTCBCTTTCSBTTTTTCEEEEEE--ETTEEEEEECCSSS--SCCSSCHHHHHHHHHHHTSTTCCEEEEEECCS
T ss_pred HHHHHHHhCCCCCCCCcCchhcCceEEEEE--ECCEEEEEEEECCC--CCcHHHHHHHHHHHHHHhCCCceeEEEEEecC
Confidence 3566666653 33666554 57888888876443 1222 3455666666 4888778887765
No 119
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=31.68 E-value=72 Score=20.59 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=31.1
Q ss_pred eeeEEEEecc-EEEEEeccceeeecccchHHHHHHHHh----cCceeEeeecccc
Q 030077 127 SDLKVQVIEG-IATVELKKQTTVQATGVAANLVEIIQG----SGFKLQTLNLSFD 176 (183)
Q Consensus 127 sdVkV~LeeG-~AtVe~dkqttvqatgvas~LvEaIe~----aGFkVq~l~l~f~ 176 (183)
=.|.|....| .-.+++++..++ ..|++.|+. .|+......|-|.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV------~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETV------KVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBH------HHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred EEEEEEECCCCEEEEEECCCCCH------HHHHHHHHhhccccCCCHHHeEEEEC
Confidence 3455555434 457888887775 999999999 6887777776664
No 120
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.56 E-value=1.1e+02 Score=19.62 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=37.7
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.|.|...+.....|++.++....|.++.+-.. .|.|-|+|.....
T Consensus 18 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 69 (95)
T 2cqc_A 18 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 69 (95)
T ss_dssp EEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHH
Confidence 556788888888999999999988999998654 4689999976555
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=30.56 E-value=1e+02 Score=20.40 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=36.7
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
.+.|-+...+.--..|++.++....|.++++ ..|.|-|+|.....
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~--~~~~afV~f~~~~~ 57 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQFGKLERVKK--LKDYAFIHFDERDG 57 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHSCEEEEEE--CSSCEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--ECCEEEEEeCCHHH
Confidence 3667788888888999999999988887665 58899999976555
No 122
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=1e+02 Score=19.72 Aligned_cols=46 Identities=4% Similarity=0.017 Sum_probs=37.9
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.|.|...+..-..|++.++....|.++++-.. .|.|-|+|.....
T Consensus 19 l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 70 (94)
T 2e5h_A 19 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 70 (94)
T ss_dssp EEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHH
Confidence 557788888889999999999988999888654 4689999976554
No 123
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.45 E-value=1.2e+02 Score=22.22 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=50.1
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCcee--Eeeeccc
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKL--QTLNLSF 175 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV--q~l~l~f 175 (183)
.+.|-+..-+.--..|++..+.-..|.+|.+--..|.|-|+++.... |...++.+.+.|+.+ ..|.+.|
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~------A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEA------ANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHH------HHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHH------HHHHHHHhccCCceECCeEEEEEE
Confidence 35566777777788999999999999999998888999999987666 344555555445443 2444444
No 124
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=30.37 E-value=29 Score=23.85 Aligned_cols=16 Identities=13% Similarity=0.511 Sum_probs=14.6
Q ss_pred hHHHHHHHHhcCceeE
Q 030077 154 AANLVEIIQGSGFKLQ 169 (183)
Q Consensus 154 as~LvEaIe~aGFkVq 169 (183)
++.|.+.++++||+|.
T Consensus 63 ~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 63 MDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEee
Confidence 5889999999999986
No 125
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=30.09 E-value=1.1e+02 Score=20.83 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=46.6
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
.+.|-|..-+.--..|.+.++....|.++++-.. .|.|-|+|... +...+||+..|+.+.
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~---------~~A~~Ai~~~~~~l~ 92 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ---------AGVDKVLAQSRHELD 92 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSH---------HHHHHHHHSSCEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCH---------HHHHHHHHHCCCcCC
Confidence 3567788878888899999999999999988664 47899999654 456778887776543
No 126
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=29.96 E-value=68 Score=20.80 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=46.5
Q ss_pred EEEEecCCCcccHHHHH----HhhccCCCceeeEEE---EeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeeec
Q 030077 101 YFQADGAMNETAIPAVT----QALQGTEGISDLKVQ---VIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLNL 173 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~Vt----kALE~ieGVsdVkV~---LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~l 173 (183)
.+.|.|...+.-...|+ +.++....|.++.+. -..|.|-|+|..... +....+.+.+.-|.=..|.+
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~------A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS------ATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHH------HHHHHHHHTTCEETTEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHH------HHHHHHHhCCCEECCcEEEE
Confidence 45677888888888888 899999889988775 235889999976655 24444444443333344444
Q ss_pred ccc
Q 030077 174 SFD 176 (183)
Q Consensus 174 ~f~ 176 (183)
.|.
T Consensus 84 ~~a 86 (97)
T 1nu4_A 84 QYA 86 (97)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 127
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=29.28 E-value=1.1e+02 Score=19.24 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=38.3
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEE-------eccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQV-------IEGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~L-------eeG~AtVe~dkqtt 147 (183)
.+.|-|...+.--..|.+.++....|.++++-. ..|.|-|++.....
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 466778888888889999999999899888844 56889999976655
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.22 E-value=1.2e+02 Score=20.00 Aligned_cols=60 Identities=5% Similarity=0.053 Sum_probs=45.5
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-------ccEEEEEeccceeeecccchHHHHHHHHhc--Ccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-------EGIATVELKKQTTVQATGVAANLVEIIQGS--GFKL 168 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-------eG~AtVe~dkqttvqatgvas~LvEaIe~a--GFkV 168 (183)
-.+.|-|..-+.--..|++.++....|.++.+-.. .|.|-|+|..... ...||+.. |+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~---------a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD---------AKKAFNALCHSTHL 84 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHH---------HHHHHHHHHTCCBS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHH---------HHHHHHHhccCCeE
Confidence 34667788888888899999999999999998776 6899999976544 45566554 5543
No 129
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=28.91 E-value=46 Score=26.79 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=42.0
Q ss_pred ceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEeee
Q 030077 97 KLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 97 ~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l~ 172 (183)
..|++.. ---|.+|+.+|-++|.+-+||+.|-+-... ...+.+.. ..-.+.++++|-+|.-+.
T Consensus 84 g~TlYvT--lePC~~Ca~aIi~al~~~~gI~rVV~~~~d----~~~~~p~~-------~~g~~~L~~aGI~V~~~~ 146 (190)
T 2nyt_A 84 NVTWYVS--SSPCAACADRIIKTLSKTKNLRLLILVGRL----FMWEEPEI-------QAALKKLKEAGCKLRIMK 146 (190)
T ss_pred CeEEEEE--cChHHHHHHHHHHhhhhcCCccEEEEEeec----CCcCChHH-------HHHHHHHHHCCCEEEEec
Confidence 4555554 447999999999999999999887653210 00111111 355678899999988654
No 130
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=28.82 E-value=1.3e+02 Score=20.00 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=39.5
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
-.+.|.|..-+.--..|.+.++....|.++.+-.. .|.|-|+|.....
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 80 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 80 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHH
Confidence 45667888888888999999999999999888655 4889999976555
No 131
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=28.80 E-value=1.4e+02 Score=20.34 Aligned_cols=48 Identities=6% Similarity=0.077 Sum_probs=40.3
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
..+.|-|..-+.-...|++.++....|.++++-.. .|.|-|+|.....
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 80 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC 80 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 45678898888889999999999999999998765 4789999976655
No 132
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=28.64 E-value=1.4e+02 Score=21.13 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=37.8
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.|-|...+.-...|++.++....|.++++-.. .|.|-|+|.....
T Consensus 49 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~ 100 (129)
T 2kxn_B 49 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 100 (129)
T ss_dssp BCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH
Confidence 456788888888999999999988999988643 5789999976655
No 133
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=28.56 E-value=1e+02 Score=25.39 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=35.9
Q ss_pred cCCCcccHHHHHHhhccCCCceeeEEEEeccE-------------------EEEEeccceeeecccchHHHHHH
Q 030077 106 GAMNETAIPAVTQALQGTEGISDLKVQVIEGI-------------------ATVELKKQTTVQATGVAANLVEI 160 (183)
Q Consensus 106 GM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~-------------------AtVe~dkqttvqatgvas~LvEa 160 (183)
|+-|=-|+ +..+..++||.++.|=+..|. +.|.||+..+ +-+.|.+.
T Consensus 49 agGCFWg~---E~~F~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~TGHaEaV~V~yDp~~i-----sy~~LL~~ 114 (199)
T 1fvg_A 49 GMGCFWGA---ERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHI-----SFEELLKV 114 (199)
T ss_dssp EESSHHHH---HHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTS-----CHHHHHHH
T ss_pred ecCCeeee---HHHHhhCCCeEEEEeeccCCCCCCCChhheecCCCCCeEEEEEEECCCcC-----CHHHHHHH
Confidence 66666665 556788899999999999886 7889988876 45555554
No 134
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=28.12 E-value=42 Score=24.74 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.1
Q ss_pred chHHHHHHHHhcCceeEeeeccc
Q 030077 153 VAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 153 vas~LvEaIe~aGFkVq~l~l~f 175 (183)
.++.+++.++++||++..+...+
T Consensus 206 t~~~~~~ll~~aGF~v~~~~~~~ 228 (239)
T 3bxo_A 206 HQAEYEAAFTAAGLRVEYLEGGP 228 (239)
T ss_dssp CHHHHHHHHHHTTEEEEEESSTT
T ss_pred CHHHHHHHHHHCCCEEEEeEcCC
Confidence 46999999999999998876543
No 135
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.07 E-value=1.1e+02 Score=20.43 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=38.6
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCce--------eeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGIS--------DLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVs--------dVkV~Le------eG~AtVe~dkqtt 147 (183)
-.+.|-|..-+.-...|++.++...-|. ++++-.. .|.|-|+|.....
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~ 77 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 77 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHH
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHH
Confidence 3467788888888899999999998887 6777765 5789999976555
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=27.91 E-value=1.4e+02 Score=21.30 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=38.3
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
.+.|.|..-+.-...|++.++....|.+|++-.. .|.|-|+|.....
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 93 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 93 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH
Confidence 4667788888888999999999999999998654 4789999976554
No 137
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.67 E-value=1.3e+02 Score=19.56 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=39.1
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEec------cEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIE------GIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee------G~AtVe~dkqtt 147 (183)
-.+.|.|..-+.-...|.+.++....|.++++-... |.|-|+|.....
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 62 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEH 62 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHH
Confidence 346677888888889999999999889888886654 889999976554
No 138
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=27.61 E-value=1.5e+02 Score=20.46 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=37.6
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe-----ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
+.|.|..-+.--..|++.++....|.++.+-.. .|.|-|++.....
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~ 148 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAM 148 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHH
Confidence 567777777777889999999999999999776 6779999977655
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.37 E-value=1.3e+02 Score=20.69 Aligned_cols=49 Identities=10% Similarity=0.012 Sum_probs=41.8
Q ss_pred EEEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 99 TMYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 99 tM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
...+.|.+...+.--..|++.++....|.++.+.-..|.|-|+|.....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~ 58 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHH
Confidence 3457788888888888999999999999998887788999999987665
No 140
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.14 E-value=1.4e+02 Score=19.38 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=36.7
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe---------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI---------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le---------eG~AtVe~dkqtt 147 (183)
+.|-|..-+.--..|++.++....|.++.+... .|.|-|+|.....
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~ 62 (98)
T 2cpf_A 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQ 62 (98)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHH
Confidence 556777777788899999999988999998753 4689999976544
No 141
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.83 E-value=1.1e+02 Score=19.99 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=37.8
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.|-|..-+.....|++.++....|.++.+-.. .|.|-|+|.....
T Consensus 15 l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 66 (102)
T 2cqb_A 15 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 66 (102)
T ss_dssp EEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHH
T ss_pred EEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHH
Confidence 557788888888999999999999999888543 6789999976555
No 142
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.74 E-value=1.2e+02 Score=19.88 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=38.2
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEec------cEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIE------GIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee------G~AtVe~dkqtt 147 (183)
.+.|.|..-+.-...|++.++....|.++.+-... |.|-|+|.....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 69 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 69 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHH
Confidence 46677888888899999999999999998886643 689999966544
No 143
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=25.73 E-value=1.5e+02 Score=22.78 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=39.1
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEec-cEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVIE-GIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Lee-G~AtVe~dkqtt 147 (183)
.+.|.+..-+.-...|++.++....|.++++.-.. |.+-|+|.....
T Consensus 209 ~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~ 256 (282)
T 3pgw_A 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQ 256 (282)
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHH
Confidence 46677777777788999999999999999998766 899999977655
No 144
>2joe_A Hypothetical lipoprotein YEHR; six antiparallel beta strands, alpha + beta sandwich, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: d.371.1.1
Probab=25.69 E-value=1.4e+02 Score=22.92 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=35.1
Q ss_pred HHHHHhhccCCCceeeEEEEeccEEEEEecccee------------eeccc-------chHHHHHHHHhcCceeEee
Q 030077 114 PAVTQALQGTEGISDLKVQVIEGIATVELKKQTT------------VQATG-------VAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 114 ~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt------------vqatg-------vas~LvEaIe~aGFkVq~l 171 (183)
..+.+...+|+||+ .++.+.++.+...++=+-. +...| +....++.+.+.||+=+-|
T Consensus 57 ~~~~~~yk~ikGvt-~kieykD~k~ietv~IDy~k~D~~~lk~~~g~~~~~~~~~k~iS~k~t~k~Lk~~Gfke~~~ 132 (139)
T 2joe_A 57 EPLSAKYKNIAGVE-EKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVKL 132 (139)
T ss_dssp HHHHTTTTTSSSCE-EEEEECSSEEEEEEEEETTSCCHHHHTTTTCCTTCHHHHHHCCBHHHHHHHHHHTTCCEEET
T ss_pred HHHHHHhCCCCCeE-EEEEEeCCEEEEEEEEeccccCHHHHhhccCccccCCCccCccCHHHHHHHHHHCCCeeecc
Confidence 34445556677777 6788888887655432211 11223 4557788888899875543
No 145
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=25.52 E-value=1.1e+02 Score=20.94 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=39.1
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
-.+.|.|..-+.-...|++.++....|.++++-.. .|.|-|+|.....
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 117 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 117 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHH
Confidence 45667888888888999999999999999888554 6889999976554
No 146
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.45 E-value=1.5e+02 Score=19.68 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=38.9
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEe---ccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVI---EGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le---eG~AtVe~dkqtt 147 (183)
-.+.|-+..-+.-...|++.++....|.++++... .|.|-|+|.....
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~ 73 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD 73 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHH
Confidence 35667888888888999999999999999988654 3589999976555
No 147
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=24.77 E-value=1.2e+02 Score=26.15 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=35.7
Q ss_pred cCCCcccHHHHHHhhccCCCceeeEEEEeccE-------------------EEEEeccceeeecccchHHHHHH
Q 030077 106 GAMNETAIPAVTQALQGTEGISDLKVQVIEGI-------------------ATVELKKQTTVQATGVAANLVEI 160 (183)
Q Consensus 106 GM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~-------------------AtVe~dkqttvqatgvas~LvEa 160 (183)
|+-|=-|+ ++..+.++||.++.|=+..|. +.|.||+..+ +-+.|.+.
T Consensus 100 AgGCFWgv---E~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~I-----Sy~~LL~~ 165 (261)
T 2j89_A 100 GAGCFWGV---ELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKEC-----SFDTLIDV 165 (261)
T ss_dssp EESSHHHH---HHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTS-----CHHHHHHH
T ss_pred ecCCeeee---HHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcC-----CHHHHHHH
Confidence 66666665 566788899999999999886 7888888876 45555544
No 148
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.71 E-value=1.3e+02 Score=19.58 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
.+.|.+...+.....|.+.++....|.++++-.. .|.|-|+|.....
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 66 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 66 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHH
Confidence 3567788888889999999999999999888663 4689999976555
No 149
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=24.35 E-value=61 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=19.5
Q ss_pred chHHHHHHHHhcCceeEeeecccc
Q 030077 153 VAANLVEIIQGSGFKLQTLNLSFD 176 (183)
Q Consensus 153 vas~LvEaIe~aGFkVq~l~l~f~ 176 (183)
..+.+++.++++||++..+--.|+
T Consensus 202 ~~~~l~~~l~~aGf~~~~~~~~~~ 225 (243)
T 3d2l_A 202 PPEQYITWLREAGFRVCAVTGDFK 225 (243)
T ss_dssp CHHHHHHHHHHTTEEEEEEEETTS
T ss_pred CHHHHHHHHHHCCCeEEEEecCcc
Confidence 578999999999999888754443
No 150
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=24.35 E-value=46 Score=25.34 Aligned_cols=23 Identities=4% Similarity=0.067 Sum_probs=19.0
Q ss_pred chHHHHHHHHhcCceeEeeeccc
Q 030077 153 VAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 153 vas~LvEaIe~aGFkVq~l~l~f 175 (183)
..+.+++.++++||+++.+.-.+
T Consensus 216 t~~el~~ll~~aGF~v~~~~~~~ 238 (263)
T 3pfg_A 216 TREQYERAFTAAGLSVEFMPGGP 238 (263)
T ss_dssp CHHHHHHHHHHTTEEEEEESSTT
T ss_pred cHHHHHHHHHHCCCEEEEeeCCC
Confidence 36999999999999999874433
No 151
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.32 E-value=1.5e+02 Score=19.61 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=38.3
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEE------eccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQV------IEGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~L------eeG~AtVe~dkqtt 147 (183)
.+.|-|..-+.--..|.+.++....|.++++-. ..|.|-|+|.....
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 69 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 69 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHH
Confidence 456778888888899999999998899888864 36789999976555
No 152
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.32 E-value=1.3e+02 Score=19.29 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=37.9
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceee-EEEEe------ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDL-KVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdV-kV~Le------eG~AtVe~dkqtt 147 (183)
.+.|.|...+.--..|.+.++...-|.++ ++-.. .|.|-|+|.....
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~ 60 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDA 60 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHH
Confidence 35567888888889999999999889998 88765 5899999976554
No 153
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=24.29 E-value=61 Score=23.78 Aligned_cols=23 Identities=0% Similarity=0.076 Sum_probs=19.5
Q ss_pred chHHHHHHHHhcCceeEeeeccc
Q 030077 153 VAANLVEIIQGSGFKLQTLNLSF 175 (183)
Q Consensus 153 vas~LvEaIe~aGFkVq~l~l~f 175 (183)
..+.+++.++++||++...--.|
T Consensus 204 ~~~~l~~ll~~aGf~~~~~~~~~ 226 (246)
T 1y8c_A 204 KEEDIEKYLKHGQLNILDKVDCY 226 (246)
T ss_dssp CHHHHHHHHHHTTEEEEEEEESS
T ss_pred CHHHHHHHHHHCCCeEEEEEccc
Confidence 57999999999999998876544
No 154
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=24.19 E-value=46 Score=26.17 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.0
Q ss_pred HHHHhhccCCCceeeEEEEe
Q 030077 115 AVTQALQGTEGISDLKVQVI 134 (183)
Q Consensus 115 ~VtkALE~ieGVsdVkV~Le 134 (183)
-+.+.|+.++||.+++|.|.
T Consensus 92 ELartI~~i~gV~~ArVhl~ 111 (170)
T 2y9j_Y 92 RLEQSLQTMEGVLSARVHIS 111 (170)
T ss_dssp HHHHHHTTSTTEEEEEEEEE
T ss_pred HHHHHHHcCCCeeEEEEEEE
Confidence 46778889999999999874
No 155
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=24.06 E-value=57 Score=21.87 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=30.9
Q ss_pred eeEEEEeccEEEEE-eccceeeecccchHHHHHHHHh-cCce--eEeeeccc
Q 030077 128 DLKVQVIEGIATVE-LKKQTTVQATGVAANLVEIIQG-SGFK--LQTLNLSF 175 (183)
Q Consensus 128 dVkV~LeeG~AtVe-~dkqttvqatgvas~LvEaIe~-aGFk--Vq~l~l~f 175 (183)
.+.|....|.-.++ +++..++ ..|++.|+. .|+- -+.|-++|
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv------~~Lk~~I~~~~gi~~~~qrL~~~~ 47 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRL------RELQGQIAAITGIAPGSQRILVGY 47 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBH------HHHHHHHHHHTCCCTTTCCCEESS
T ss_pred EEEEEcCCCCEEeeecCCCCCH------HHHHHHHHHHhCCCccceEEEeCC
Confidence 36788889988888 8887775 999999984 5763 45555554
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=23.67 E-value=2.1e+02 Score=20.65 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=37.8
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.|.|..-+.-...|++.++....|.+++|-.. .|.|-|+|.....
T Consensus 128 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 128 IYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred EEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 456677767778899999999999999999876 6889999976555
No 157
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=23.66 E-value=1.4e+02 Score=24.36 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=34.7
Q ss_pred cCCCcccHHHHHHhhccCCCceeeEEEEeccE-------------------EEEEeccceeeecccchHHHHHH
Q 030077 106 GAMNETAIPAVTQALQGTEGISDLKVQVIEGI-------------------ATVELKKQTTVQATGVAANLVEI 160 (183)
Q Consensus 106 GM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~-------------------AtVe~dkqttvqatgvas~LvEa 160 (183)
|+-|=-| ++..+..++||.++.|=+..|. +.|.+|+..+ +-..|.+.
T Consensus 8 agGCFWg---~E~~F~~~~GV~~t~vGYagG~~~nPtY~~Vc~g~tGHaEaV~V~yDp~~i-----sy~~LL~~ 73 (193)
T 3bqh_A 8 AGGCFWG---LEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKL-----SLDDILQY 73 (193)
T ss_dssp EESCHHH---HHHHHHTSTTEEEEEEEEESCSSSSCCHHHHHHSCCCCEEEEEEEEETTTC-----CHHHHHHH
T ss_pred ecCCeee---hHHHHhcCCCEEEEEEeccCCcCCCCChheeecCCCCCeEEEEEEECCCcC-----CHHHHHHH
Confidence 5555555 5666889999999999999885 6788888776 45555543
No 158
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=23.45 E-value=1.8e+02 Score=24.02 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=34.9
Q ss_pred cCCCcccHHHHHHhhccCCCceeeEEEEeccE---------------EEEEeccceeeecccchHHHHHH
Q 030077 106 GAMNETAIPAVTQALQGTEGISDLKVQVIEGI---------------ATVELKKQTTVQATGVAANLVEI 160 (183)
Q Consensus 106 GM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~---------------AtVe~dkqttvqatgvas~LvEa 160 (183)
|+-|=-| ++..+..++||.++.|=+..|. +.|.||+..+ +-+.|.+.
T Consensus 31 agGCFWg---~E~~F~~l~GV~~t~vGYaGG~~~nPtYe~~G~HaEaV~V~yDp~~i-----Sy~~LL~~ 92 (203)
T 1nwa_A 31 AGGCFWG---LQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVT-----DYRTLLEF 92 (203)
T ss_dssp EESCHHH---HHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTC-----CHHHHHHH
T ss_pred ecCCeee---eHHHHhcCCCeEEEEeeecCCCCCCCChhhcCCceEEEEEEECCCcC-----CHHHHHHH
Confidence 5555555 5666888999999999998873 6788888776 45555554
No 159
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=23.24 E-value=52 Score=23.98 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=17.1
Q ss_pred chHHHHHHHHhcCceeEeee
Q 030077 153 VAANLVEIIQGSGFKLQTLN 172 (183)
Q Consensus 153 vas~LvEaIe~aGFkVq~l~ 172 (183)
..+.+++.++++||++..+.
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEE
Confidence 46899999999999987663
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=22.94 E-value=1.7e+02 Score=19.19 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=48.6
Q ss_pred eEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEE-----eccEEEEEeccceeeecccchHHHHHHHHhcCceeE
Q 030077 98 LTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQV-----IEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQ 169 (183)
Q Consensus 98 ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~L-----eeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq 169 (183)
-...+.|-|..-+.--..|.+.++....|.++++-. ..|.|-|+|..... ..+||+ .|+.+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~---------a~~Ai~-~~~~~~ 74 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD---------VQKIVE-SQINFH 74 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC---------HHHHTT-CCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH---------HHHHHh-CCCeEC
Confidence 345688889988889999999999999999998877 45899999987666 356666 555443
No 161
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.48 E-value=1.6e+02 Score=18.85 Aligned_cols=47 Identities=4% Similarity=-0.000 Sum_probs=38.5
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
.+.|.+..-+.....|++.++....|.++++-.. .|.|-|+|.....
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 59 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 59 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHH
Confidence 3556788888888999999999999999998765 4689999976555
No 162
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=22.39 E-value=72 Score=22.48 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=28.9
Q ss_pred eEEEEeccEEEEEec-cceeeecccchHHHHHHHH-hcCceeEeeecc
Q 030077 129 LKVQVIEGIATVELK-KQTTVQATGVAANLVEIIQ-GSGFKLQTLNLS 174 (183)
Q Consensus 129 VkV~LeeG~AtVe~d-kqttvqatgvas~LvEaIe-~aGFkVq~l~l~ 174 (183)
+.|.-.+|.-+|+++ +..++ ..|++.|+ ..|.-+....|.
T Consensus 10 irvrs~~G~~~v~v~~~~~Tv------~~LK~kI~~~~gip~~~QrL~ 51 (107)
T 1wf9_A 10 LRVRSRDGLERVSVDGPHITV------SQLKTLIQDQLQIPIHNQTLS 51 (107)
T ss_dssp EEEECSSCEEEEEECCTTSBH------HHHHHHHHHHSCCCTTTCCCB
T ss_pred EEEECCCCCEEEEECCCCCcH------HHHHHHHHHHhCcCcccCEEE
Confidence 666667888889988 77775 89999998 568654444443
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=22.34 E-value=2e+02 Score=19.94 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=38.2
Q ss_pred EEEecCCCcccHHHHHHhhccCCCceeeEEEEe------ccEEEEEecccee
Q 030077 102 FQADGAMNETAIPAVTQALQGTEGISDLKVQVI------EGIATVELKKQTT 147 (183)
Q Consensus 102 FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le------eG~AtVe~dkqtt 147 (183)
+.|.|..-+.--..|.+.++....|.++.+... .|.|-|++.....
T Consensus 97 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred EEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 456777777778899999999999999999877 4789999977665
No 164
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=22.29 E-value=1.2e+02 Score=29.10 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=38.5
Q ss_pred HHHHhhccCCCceeeEEEEe-ccEEEEEeccceeeecccchHHHHHHHHhcCcee
Q 030077 115 AVTQALQGTEGISDLKVQVI-EGIATVELKKQTTVQATGVAANLVEIIQGSGFKL 168 (183)
Q Consensus 115 ~VtkALE~ieGVsdVkV~Le-eG~AtVe~dkqttvqatgvas~LvEaIe~aGFkV 168 (183)
.++..|+.+|||.+|++.-. ..+..|++|++.-.+.-=+.+.|.++|+...+.+
T Consensus 170 ~~~~~l~~~pgv~~V~~~g~~~~~i~i~id~~kl~~~gls~~~v~~~l~~~~~~~ 224 (1054)
T 3ne5_A 170 FLKYELKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEA 224 (1054)
T ss_dssp THHHHHTTSTTEEEEEEEESCCEEEEEEECHHHHHHTTCCHHHHHHHHHTSSCCE
T ss_pred HHHHHHhcCCCeEEEEEeCCCcEEEEEEECHHHHHHcCCCHHHHHHHHHHhcCcC
Confidence 37779999999999998643 2467788887554322225688999999875543
No 165
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=22.02 E-value=49 Score=31.76 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=37.4
Q ss_pred cHHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHh
Q 030077 112 AIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQG 163 (183)
Q Consensus 112 Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~ 163 (183)
....|++.|+.+|||.+|++.-.+.+..|++|++.-.+.-=+.+.|.++|+.
T Consensus 158 a~~~i~~~l~~i~gv~~v~~~g~~~~i~i~~d~~~l~~~glt~~~v~~~l~~ 209 (1057)
T 4dx5_A 158 VAANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKA 209 (1057)
T ss_dssp HHHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 3468999999999999999854445777888875532111146788888886
No 166
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.88 E-value=1.7e+02 Score=19.07 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=38.6
Q ss_pred EEEEecCCCcccHHHHHHhhcc-CCCceeeEEEEe-----ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQG-TEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~-ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
.+.|-|..-+.--..|++.++. ...|.++++-.. .|.|-|+|.....
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~ 63 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELE 63 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH
Confidence 4567788888888999999999 877999998764 7889999976555
No 167
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=21.33 E-value=60 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.1
Q ss_pred chHHHHHHHHhcCceeEeeec
Q 030077 153 VAANLVEIIQGSGFKLQTLNL 173 (183)
Q Consensus 153 vas~LvEaIe~aGFkVq~l~l 173 (183)
..+.+++.++++||++..+.-
T Consensus 188 ~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 188 TLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CHHHHHHHHHHTTEEEEEEEC
T ss_pred cHHHHHHHHHHcCCeEEEEec
Confidence 469999999999999987654
No 168
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.21 E-value=1.3e+02 Score=20.26 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=41.4
Q ss_pred CCCceEEEEEEecCCCcccHHHHHHhhccCCCceeeEEEE------eccEEEEEecccee
Q 030077 94 PSDKLTMYFQADGAMNETAIPAVTQALQGTEGISDLKVQV------IEGIATVELKKQTT 147 (183)
Q Consensus 94 ~~~~ltM~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~L------eeG~AtVe~dkqtt 147 (183)
+.+.-.-.+.|-|..-+.-...|++.++....|.++++-. ..|.|-|+|.....
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 79 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS 79 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGG
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHH
Confidence 3333344567888888888899999999999899988854 34789999976655
No 169
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=21.11 E-value=1.7e+02 Score=24.28 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=35.2
Q ss_pred cCCCcccHHHHHHhhccCCCceeeEEEEeccE-------------------EEEEeccceeeecccchHHHHHH
Q 030077 106 GAMNETAIPAVTQALQGTEGISDLKVQVIEGI-------------------ATVELKKQTTVQATGVAANLVEI 160 (183)
Q Consensus 106 GM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~-------------------AtVe~dkqttvqatgvas~LvEa 160 (183)
||-|=-|+ ++.+..++||.++.|=+..|. +.|.||+..+ +-+.|.+.
T Consensus 48 agGCFWg~---E~~F~~l~GV~~t~vGYaGG~~~nPtY~~VcsG~TGHaEaV~V~yDp~~i-----sy~~LL~~ 113 (211)
T 1ff3_A 48 AMGXFWGV---ERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVI-----SYEQLLQV 113 (211)
T ss_dssp ECSSHHHH---HHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTS-----CHHHHHHH
T ss_pred ecCCeEEe---hhhHhcCCCeEEEEeeecCCCCCCCChhhccCCCCCceEEEEEEECCCcC-----CHHHHHHH
Confidence 66666665 556788899999999998774 7888888876 45555544
No 170
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=20.93 E-value=1.1e+02 Score=26.61 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=37.4
Q ss_pred HHHHHHhhccCCCceeeEEEEeccEEEEEeccceeeecccchHHHHHHHHhcCceeEee
Q 030077 113 IPAVTQALQGTEGISDLKVQVIEGIATVELKKQTTVQATGVAANLVEIIQGSGFKLQTL 171 (183)
Q Consensus 113 i~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqttvqatgvas~LvEaIe~aGFkVq~l 171 (183)
|-.+=-||.++ ||-|+-|.++..+ .++ .-|++...+++|+++|..-|.-
T Consensus 76 VEHllAAL~g~-gIDN~~Ievdg~E--------vPI-mDGSA~~fv~~i~~aGi~eq~a 124 (299)
T 3uhm_A 76 VEHLLSAMAGL-GIDNAYVELSASE--------VPI-MDGSAGPFVFLIQSAGLQEQEA 124 (299)
T ss_dssp CHHHHHHHHHT-TCCCEEEEESSSB--------CBC-TTSSSHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHhC-CCceEEEEEcCCC--------CCc-cCCchHHHHHHHHHcCCeecCC
Confidence 44566778887 9999998886643 222 5799999999999999876554
No 171
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=20.74 E-value=1.8e+02 Score=21.87 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=35.1
Q ss_pred eeecCCCCceEEEEEEecCCCcc-cHHHHHHhhccCCCceeeEEEEeccEEEEEe
Q 030077 89 AVPVSPSDKLTMYFQADGAMNET-AIPAVTQALQGTEGISDLKVQVIEGIATVEL 142 (183)
Q Consensus 89 ~~~~~~~~~ltM~FKaEGM~Ce~-Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~ 142 (183)
+.|-+..|..++.|+|.|.-=.- --+-+.+.=..+ |++----|+.+|.+.+++
T Consensus 25 ~~p~~~~di~t~~frV~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~ 78 (121)
T 2lxf_A 25 SMPSSSEDVTTLCYRVTGKVQGVFFRKYTKKEADAL-SLVGYVTNNEDGSVSGVV 78 (121)
T ss_dssp CCCCCSTTEEEEEEEEEECTTCCCCHHHHHHHHHHH-TCEEEEEECTTSCEEEEE
T ss_pred CCCCCccCEEEEEEEEEEeeCCcCchHHHHHHHHHc-CCEEEEEECCCCCEEEEE
Confidence 45556667778889999987653 334444433333 778777788899777554
No 172
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=1.8e+02 Score=18.68 Aligned_cols=46 Identities=4% Similarity=0.076 Sum_probs=37.6
Q ss_pred EEEEEecCCCcccHHHHHHhhccCCCceeeEEEEeccEEEEEecccee
Q 030077 100 MYFQADGAMNETAIPAVTQALQGTEGISDLKVQVIEGIATVELKKQTT 147 (183)
Q Consensus 100 M~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~LeeG~AtVe~dkqtt 147 (183)
..+.|-|...+.-...|++.++....|.++++. .+.|-|+|.....
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~ 56 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAED 56 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHH
Confidence 456778988889999999999999888777654 7899999976555
No 173
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.24 E-value=2e+02 Score=19.15 Aligned_cols=47 Identities=4% Similarity=0.019 Sum_probs=39.4
Q ss_pred EEEEecCCCcccHHHHHHhhccCCCceeeEEEEe-----ccEEEEEecccee
Q 030077 101 YFQADGAMNETAIPAVTQALQGTEGISDLKVQVI-----EGIATVELKKQTT 147 (183)
Q Consensus 101 ~FKaEGM~Ce~Ci~~VtkALE~ieGVsdVkV~Le-----eG~AtVe~dkqtt 147 (183)
.+.|-|..-+.....|.+.++....|.++++-.. .|.|-|+|.....
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~ 78 (114)
T 1x5o_A 27 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK 78 (114)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHH
Confidence 4667888888889999999999988999998765 5789999976655
Done!