BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030078
         (183 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
          Length = 198

 Score =  210 bits (534), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 147/206 (71%), Gaps = 31/206 (15%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVDHVA-----------------LAEVEKEKRESFIKAWEESEKTKAENKAQKKL 97
           SKAL VV+  A                 LA V  EKR S IKAWEESEK+KAENKAQKK+
Sbjct: 53  SKALVVVETKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKV 112

Query: 98  SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 157
           SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGE
Sbjct: 113 SAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGE 172

Query: 158 DVLKAEEIAAKYRATGTTPKKLLGCF 183
           D+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 173 DLLKAEELAAKYRATGTAPKKILGIF 198


>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
           GN=At3g61260 PE=1 SV=1
          Length = 212

 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 126/167 (75%), Gaps = 20/167 (11%)

Query: 35  DVAEEKAVTQLHDQEKPVDDSKALAVVD------------------HVALAEVEKEKRES 76
           DVAEEK   Q    E+  DDSKAL VV+                   V LA++ KEKR S
Sbjct: 48  DVAEEK--IQNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASLDRDVKLADLSKEKRLS 105

Query: 77  FIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNK 136
           F++AWEESEK+KAENKA+KK++ V AWENSKKA++EA+LKKIEEQLE+KKAEYAE+MKNK
Sbjct: 106 FVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNK 165

Query: 137 VALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183
           VA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct: 166 VAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212


>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
          Length = 190

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 144/202 (71%), Gaps = 31/202 (15%)

Query: 1   MAEEQ-VKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ   KV+ E+PA  APA    PAP       +VA+EK    +H+   P  +SKALA
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPAPV------EVADEK----IHNP--PPVESKALA 48

Query: 60  VVD------------------HVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVA 101
           VV+                   V LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V 
Sbjct: 49  VVEKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVH 108

Query: 102 AWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLK 161
           AWENSKKA++EA+L+KIEE+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LK
Sbjct: 109 AWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLK 168

Query: 162 AEEIAAKYRATGTTPKKLLGCF 183
           AEE+ AKYRATG  PK   GCF
Sbjct: 169 AEEMGAKYRATGVVPKATCGCF 190


>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2
          Length = 698

 Score = 30.8 bits (68), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 13  TPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALAVVDHVALAE-VEK 71
            P +P  + A +PA +PA PN    ++++    H +   +  S+ + V   V + E V +
Sbjct: 85  VPKSPDASSAFSPA-SPATPNGTKGKDESQ---HTESMVLQSSRGIKVEGCVRMYELVHR 140

Query: 72  EKRESFIKAWEESEKTKAE---NKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAE 128
            K    ++ W+E ++ K +     A ++L     W+  K+      L+++ E+  R+   
Sbjct: 141 MKGTEGLRLWQEEQERKVQALSEMASEQLKRFDEWKELKQHKEFQDLREVMEKSSREALG 200

Query: 129 YAEKMK 134
           + EK+K
Sbjct: 201 HQEKLK 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.119    0.313 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,458,579
Number of Sequences: 539616
Number of extensions: 2635508
Number of successful extensions: 32618
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 2081
Number of HSP's that attempted gapping in prelim test: 24818
Number of HSP's gapped (non-prelim): 7392
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)