Query 030078
Match_columns 183
No_of_seqs 128 out of 218
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 1.1E-37 2.3E-42 241.0 15.2 108 71-178 2-109 (111)
2 PF03766 Remorin_N: Remorin, N 98.0 1.4E-06 3E-11 61.1 0.4 29 33-62 4-32 (57)
3 PF03763 Remorin_C: Remorin, C 96.6 0.072 1.6E-06 41.5 11.7 81 70-150 23-103 (111)
4 KOG4661 Hsp27-ERE-TATA-binding 62.3 61 0.0013 32.8 9.3 85 68-152 608-705 (940)
5 PRK09174 F0F1 ATP synthase sub 55.6 1.3E+02 0.0028 25.5 12.4 46 109-154 101-146 (204)
6 cd03404 Band_7_HflK Band_7_Hfl 40.1 2.3E+02 0.0049 23.9 8.6 50 122-171 192-241 (266)
7 TIGR01933 hflK HflK protein. H 31.1 3.2E+02 0.007 23.0 9.6 49 122-170 165-213 (261)
8 COG5269 ZUO1 Ribosome-associat 30.0 4.5E+02 0.0097 24.5 8.9 61 88-148 233-293 (379)
9 PF11559 ADIP: Afadin- and alp 29.8 1.9E+02 0.004 22.7 5.9 11 95-105 84-94 (151)
10 PF07352 Phage_Mu_Gam: Bacteri 27.6 2.3E+02 0.0049 22.4 6.0 38 84-121 17-54 (149)
11 PF10376 Mei5: Double-strand r 27.2 4.1E+02 0.009 23.0 10.1 59 97-156 130-188 (221)
12 KOG3654 Uncharacterized CH dom 26.5 2.1E+02 0.0045 28.7 6.5 43 103-156 397-441 (708)
13 PF11554 DUF3232: Protein of u 25.9 3.9E+02 0.0085 22.3 7.5 58 87-147 51-108 (152)
14 PRK14474 F0F1 ATP synthase sub 25.0 4.6E+02 0.0099 22.7 10.1 13 78-90 42-54 (250)
15 PRK13455 F0F1 ATP synthase sub 23.9 3.9E+02 0.0085 21.6 10.3 14 114-127 80-93 (184)
16 PF12856 Apc9: Anaphase-promot 21.6 69 0.0015 24.8 1.9 22 73-94 44-65 (100)
17 PF13645 YkuD_2: L,D-transpept 20.5 64 0.0014 27.2 1.7 15 168-183 139-153 (176)
18 PRK14471 F0F1 ATP synthase sub 20.4 4.4E+02 0.0095 20.8 10.1 9 79-87 46-54 (164)
19 PRK08475 F0F1 ATP synthase sub 20.4 4.6E+02 0.01 21.1 10.1 17 120-136 99-115 (167)
20 PRK13453 F0F1 ATP synthase sub 20.2 4.7E+02 0.01 21.1 10.1 22 132-153 111-132 (173)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=1.1e-37 Score=240.97 Aligned_cols=108 Identities=56% Similarity=0.790 Sum_probs=105.6
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 71 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAM 150 (183)
Q Consensus 71 ~ekr~S~a~AWEeaEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA~ 150 (183)
.+.+++++++||+++++|+++||++++++|++|||+|+++|+++|+++|++||++|+.++|+|+|+|+.||++|+++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhcCCCCCC
Q 030078 151 VEARRGEDVLKAEEIAAKYRATGTTPKK 178 (183)
Q Consensus 151 aeakr~ee~~Ka~EkA~k~R~TGk~P~s 178 (183)
++++|+++++++.++|++||+||++|++
T Consensus 82 aea~r~~~~~k~~ekA~~~R~tG~~P~~ 109 (111)
T PF03763_consen 82 AEARRGEEIAKAEEKAAKIRATGKVPSK 109 (111)
T ss_pred HHHHHhhHHHhHHHHHHHHHhCCCCCcc
Confidence 9999999999999999999999999987
No 2
>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=98.01 E-value=1.4e-06 Score=61.14 Aligned_cols=29 Identities=55% Similarity=0.628 Sum_probs=25.7
Q ss_pred CCchhhhhhccCCCCCCCCCCccchhhhhh
Q 030078 33 NNDVAEEKAVTQLHDQEKPVDDSKALAVVD 62 (183)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~skal~~~~ 62 (183)
++|++++++++|||. ++..||||||++|+
T Consensus 4 ~~dva~ek~~~PpP~-~~k~ddSKAl~vVe 32 (57)
T PF03766_consen 4 AKDVAEEKSVIPPPA-EEKPDDSKALVVVE 32 (57)
T ss_pred chhhccccCCCCCCC-CCCCCccceEEEee
Confidence 589999999998886 67889999999986
No 3
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.56 E-value=0.072 Score=41.50 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=63.1
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 70 EKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRA 149 (183)
Q Consensus 70 ~~ekr~S~a~AWEeaEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA 149 (183)
..++.++.|.+||...++|+....++.+.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+.+..+..+|.-.|.
T Consensus 23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~ 102 (111)
T PF03763_consen 23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRA 102 (111)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence 34556899999999999999999999998764322222234445566677889999999999999999999999888775
Q ss_pred H
Q 030078 150 M 150 (183)
Q Consensus 150 ~ 150 (183)
.
T Consensus 103 t 103 (111)
T PF03763_consen 103 T 103 (111)
T ss_pred C
Confidence 3
No 4
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=62.31 E-value=61 Score=32.84 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=50.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Q 030078 68 EVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEE-------------QLERKKAEYAEKMK 134 (183)
Q Consensus 68 rv~~ekr~S~a~AWEeaEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~-------------kLEkkRA~a~EKm~ 134 (183)
-+.+++|.-.-..-+-.+...+..+-.+++..-.+||...+...++++-+||- .||++|.+.++.-.
T Consensus 608 ~~sfdk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr 687 (940)
T KOG4661|consen 608 ERSFDKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERR 687 (940)
T ss_pred hhhHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444333444445777888888888888899999988888777766652 23444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030078 135 NKVALVHKEAEEKRAMVE 152 (183)
Q Consensus 135 NKiA~a~kkAEekRA~ae 152 (183)
..-.+||+.-++-|-+-+
T Consensus 688 ~eqeRihreReelRrqqe 705 (940)
T KOG4661|consen 688 DEQERIHREREELRRQQE 705 (940)
T ss_pred chhhhhhhhHHHHhhccc
Confidence 444555555555544433
No 5
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.60 E-value=1.3e+02 Score=25.50 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 109 ASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEAR 154 (183)
Q Consensus 109 AKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeak 154 (183)
..++..+..+|.+|..-|.++.+-+.+-...++...+..+..+++.
T Consensus 101 ~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~e 146 (204)
T PRK09174 101 QEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEAS 146 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444444444444444433
No 6
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=40.13 E-value=2.3e+02 Score=23.93 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 030078 122 LERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRA 171 (183)
Q Consensus 122 LEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~Ka~EkA~k~R~ 171 (183)
.++.++++...-...+..++..|+..+..+++.+.....+++-.+..|+.
T Consensus 192 ~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~ 241 (266)
T cd03404 192 RERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFES 241 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444333334567788888888999999999888888877777653
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=31.05 E-value=3.2e+02 Score=22.99 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 030078 122 LERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYR 170 (183)
Q Consensus 122 LEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~Ka~EkA~k~R 170 (183)
.++.++++...-...+..+...|+..+..+++.+..+..+++-.|..++
T Consensus 165 ~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~ 213 (261)
T TIGR01933 165 EERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFT 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3556666644444555667777777777777777777777655555544
No 8
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=4.5e+02 Score=24.52 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 88 KAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKR 148 (183)
Q Consensus 88 K~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekR 148 (183)
|...--.+++.+|..||-.--+.+++.+...-..-++.|++..-.-.--+..+.++|-|--
T Consensus 233 K~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~ 293 (379)
T COG5269 233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVM 293 (379)
T ss_pred hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHH
Confidence 4444455778889999988777666555443222235555555555555555555555543
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.81 E-value=1.9e+02 Score=22.67 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=4.2
Q ss_pred HhHHhHHHHHH
Q 030078 95 KKLSAVAAWEN 105 (183)
Q Consensus 95 keeakI~aWEn 105 (183)
..+..+..+++
T Consensus 84 ~~ere~~~~~~ 94 (151)
T PF11559_consen 84 ELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 10
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=27.56 E-value=2.3e+02 Score=22.42 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHH
Q 030078 84 SEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQ 121 (183)
Q Consensus 84 aEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~k 121 (183)
.+...+.+.++.+.+.|..|-..+.+.....+..++.-
T Consensus 17 ~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 17 REIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777766666666666555443
No 11
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=27.22 E-value=4.1e+02 Score=22.99 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=47.7
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030078 97 LSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG 156 (183)
Q Consensus 97 eakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ 156 (183)
+-.++.|+. .+++.+.+++..+..|.+....-+.+++|.+..++..-..||...+..-.
T Consensus 130 ~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~ 188 (221)
T PF10376_consen 130 ELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALY 188 (221)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 445677766 66788899999999999999888899999999999999999877665443
No 12
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=26.47 E-value=2.1e+02 Score=28.70 Aligned_cols=43 Identities=33% Similarity=0.464 Sum_probs=23.1
Q ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030078 103 WENSKKASLEAKLKK--IEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG 156 (183)
Q Consensus 103 WEn~qKAKAEA~mrK--~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ 156 (183)
.|..|+-.-|+++|| +|.+.|.+|-+ ++++|+|-|+-.|..++
T Consensus 397 lekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~keee~a 441 (708)
T KOG3654|consen 397 LEKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEEEVA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhhhhh
Confidence 344555555555554 45556666654 45566666655554433
No 13
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=25.94 E-value=3.9e+02 Score=22.30 Aligned_cols=58 Identities=10% Similarity=0.228 Sum_probs=48.3
Q ss_pred hHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 87 TKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEK 147 (183)
Q Consensus 87 aK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEek 147 (183)
..+-.+--+++..|+.|-+..-. .++|-+-++|++-|..+++-+-+.+..++|.++-.
T Consensus 51 ~~Y~~~V~~mE~~l~t~rfrleg---eeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~ 108 (152)
T PF11554_consen 51 KEYVLIVYRMEDQLQTWRFRLEG---EEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKE 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCTS-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56677778899999999987654 56788889999999999999999999998887643
No 14
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.95 E-value=4.6e+02 Score=22.73 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=6.6
Q ss_pred HHHHHHHHHhHHH
Q 030078 78 IKAWEESEKTKAE 90 (183)
Q Consensus 78 a~AWEeaEkaK~~ 90 (183)
....++++..+..
T Consensus 42 ~~~l~~Ae~~~~e 54 (250)
T PRK14474 42 ANRWQDAEQRQQE 54 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 3446666554443
No 15
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=23.90 E-value=3.9e+02 Score=21.62 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 030078 114 KLKKIEEQLERKKA 127 (183)
Q Consensus 114 ~mrK~E~kLEkkRA 127 (183)
.+...+.+|..-|.
T Consensus 80 ~l~e~e~~L~~A~~ 93 (184)
T PRK13455 80 LLASYERKQREVQE 93 (184)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 16
>PF12856 Apc9: Anaphase-promoting complex subunit 9; InterPro: IPR024274 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=21.63 E-value=69 Score=24.78 Aligned_cols=22 Identities=41% Similarity=0.380 Sum_probs=16.5
Q ss_pred HHHhhHHHHHHHHHhHHHHHHH
Q 030078 73 KRESFIKAWEESEKTKAENKAQ 94 (183)
Q Consensus 73 kr~S~a~AWEeaEkaK~~~R~~ 94 (183)
-++|+|.+|+.+|++-.+-=|+
T Consensus 44 l~eSkI~~~l~sEra~h~liFh 65 (100)
T PF12856_consen 44 LRESKIKAWLSSERAAHCLIFH 65 (100)
T ss_pred HHHHHHHHHHHHHHHhcceecc
Confidence 4679999999999875544344
No 17
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=20.52 E-value=64 Score=27.20 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=12.3
Q ss_pred HHhhcCCCCCCCCCCC
Q 030078 168 KYRATGTTPKKLLGCF 183 (183)
Q Consensus 168 k~R~TGk~P~s~~gCF 183 (183)
.+...|++++| .|||
T Consensus 139 ~i~~~grlGrS-~GCp 153 (176)
T PF13645_consen 139 FIKKYGRLGRS-WGCP 153 (176)
T ss_pred HHHhcCCCccc-CCCC
Confidence 56788999888 6998
No 18
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.43 E-value=4.4e+02 Score=20.84 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 030078 79 KAWEESEKT 87 (183)
Q Consensus 79 ~AWEeaEka 87 (183)
...++++..
T Consensus 46 ~~l~~A~~~ 54 (164)
T PRK14471 46 NALASAEEA 54 (164)
T ss_pred HHHHHHHHH
Confidence 334444433
No 19
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.41 E-value=4.6e+02 Score=21.14 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030078 120 EQLERKKAEYAEKMKNK 136 (183)
Q Consensus 120 ~kLEkkRA~a~EKm~NK 136 (183)
...++.+..++++.++.
T Consensus 99 ~eAe~~~~~ii~~A~~e 115 (167)
T PRK08475 99 KEAYILTQKIEKQTKDD 115 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444443333
No 20
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.16 E-value=4.7e+02 Score=21.09 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030078 132 KMKNKVALVHKEAEEKRAMVEA 153 (183)
Q Consensus 132 Km~NKiA~a~kkAEekRA~aea 153 (183)
.....+..++...+..+..+..
T Consensus 111 ea~~~~~~A~~~I~~ek~~a~~ 132 (173)
T PRK13453 111 RANGMIETAQSEINSQKERAIA 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
Done!